Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008527.1 Hibiscus syriacus cultivar Beakdansim tig00111402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9057482
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 31 of 37
Found at i:7544778 original size:16 final size:16
Alignment explanation
Indices: 7544757--7544800 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
7544747 GAATAATAAG
7544757 CATGTGGGGTAGATAT
1 CATGTGGGGTAGATAT
*
7544773 CATGTGGGATAGATAT
1 CATGTGGGGTAGATAT
*
7544789 CATGTAGGGTAG
1 CATGTGGGGTAG
7544801 GACTTTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.27, C:0.07, G:0.36, T:0.30
Consensus pattern (16 bp):
CATGTGGGGTAGATAT
Found at i:7546761 original size:12 final size:11
Alignment explanation
Indices: 7546746--7546792 Score: 58
Period size: 11 Copynumber: 4.1 Consensus size: 11
7546736 AATAAAAATA
7546746 AAAATAAAAAAG
1 AAAA-AAAAAAG
*
7546758 AAAAAACAAAG
1 AAAAAAAAAAG
7546769 AAAAAAACAAAG
1 AAAAAAA-AAAG
*
7546781 AAAAAAACAAG
1 AAAAAAAAAAG
7546792 A
1 A
7546793 CGTATATGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
11 16 0.52
12 15 0.48
ACGTcount: A:0.83, C:0.06, G:0.09, T:0.02
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:7546792 original size:11 final size:12
Alignment explanation
Indices: 7546754--7546790 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
7546744 TAAAAATAAA
7546754 AAAG-AAAAAAC
1 AAAGAAAAAAAC
7546765 AAAGAAAAAAAC
1 AAAGAAAAAAAC
7546777 AAAGAAAAAAAC
1 AAAGAAAAAAAC
7546789 AA
1 AA
7546791 GACGTATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 4 0.16
12 21 0.84
ACGTcount: A:0.84, C:0.08, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAGAAAAAAAC
Found at i:7548790 original size:642 final size:643
Alignment explanation
Indices: 7547547--7548833 Score: 2191
Period size: 642 Copynumber: 2.0 Consensus size: 643
7547537 TAGCTATAAT
* *
7547547 TTATTGAAGGATTAACAATTTAATTAATTCTTTGATGTCCAATGAACTCTAGTTTTATGATTCGT
1 TTATTAAAGGATTAACAATGTAATTAATTCTTTGATGTCCAATGAACTCTAGTTTTATGATTCGT
* *
7547612 CTCATTTATAAAACCGAGAAATGGGCAATATTTTCAAGACTTTTTGATCAAACATTTTTCAAAAC
66 CTCAATTATAAAACCGAGAAAGGGGCAATATTTTCAAGACTTTTTGATCAAACATTTTTCAAAAC
* *
7547677 TCTTTTAATTGATGTTTTCAGATCTTGAAAAAAGAATAAGAAAAACACTTTTTAAACAAGACAAT
131 TCTTCTAATTGATGTTTTCAGATCTTGAAAAAAGAAGAAGAAAAACACTTTTTAAACAAGACAAT
* *
7547742 CTCTCTAGAGTGGATCTTGGTATTAGACATGTGGTTCTCAGACGCAAAGATCATGCTTAAAATCA
196 CTCTCTAGAGTGGATATTGGTATTAGACATGTGATTCTCAGACGCAAAGATCATGCTTAAAATCA
* *
7547807 GTGCCGAAGCAATAGAGAGCATCTTTGAAGATTCAACCTTAAATGTTAGGGCATCTTTTGAGGTT
261 GTGCCGAAGCAATAGAGAGCATCTTTGAAGATTCAACATCAAATGTTAGGGCATCTTTTGAGGTT
*
7547872 CAACATCGAATATCGGGGCATATTTAGGAATTCAATATCATGGTGCGGATTATCAGATCTTCTTG
326 CAACATCGAATATCGAGGCATATTTAGGAATTCAATATCATGGTGCGGATTATCAGATCTTCTTG
* *
7547937 AGGTATTTCCTCCACATGCAGGAACAAGCAGACAAAGAATGAGGCTCCATTTAAGAAGAACTAAT
391 AGGTATTTCCTCCACATGCAGGAACAAGAAGACAAAGAATGAGACTCCATTTAAGAAGAACTAAT
* *
7548002 TCATGTTGCATGCATCATAGACATACCTAAGAGCATCATATTTATCTTGTTTAGCATACATGATT
456 TCATGTTGCATACATCATAGACATACCTAAGAGCATCATATTTATCATGTTTAGCATACATGATT
*
7548067 TTATTACAGCTTTTAGAGTCCAGTTTCAACTTAAAGATGAATGATACTCAATTCAAAAGCACATT
521 TTATTACAGCTTTTAGAGTCCAGTTTCAACTTAAAGATGAAAGATACTCAATTCAAAAGCACATT
*
7548132 CAGAAATTTATGGTGGTTTCTCAACTTCACAGCGAAGGGGCGACTGTCAACAAACAAC
586 CAGAAATTTATGGTGGTTGCTCAACTTCACAGCGAAGGGGCGACTGTCAACAAACAAC
* *
7548190 TTATTAAAGGATT-ACAGTGTAATTAATTCTTTTATGTCCAATGAACTCTAGTTTTATGATTCGT
1 TTATTAAAGGATTAACAATGTAATTAATTCTTTGATGTCCAATGAACTCTAGTTTTATGATTCGT
* *
7548254 CTCAATTATGAAACCGATAAAGGGGCAATATTTTCAAGACTTTTTGATCAAACATTTTTCAAAAC
66 CTCAATTATAAAACCGAGAAAGGGGCAATATTTTCAAGACTTTTTGATCAAACATTTTTCAAAAC
*
7548319 TCTTCTAATTGATGTTTTCATATCTTGAAAAAAGAAGAAGAAAAACACTTTTTAAACAAGACAAT
131 TCTTCTAATTGATGTTTTCAGATCTTGAAAAAAGAAGAAGAAAAACACTTTTTAAACAAGACAAT
* * * * * *
7548384 CTCTCTATAGTGGATATTGGTATTTGACATGTGATTCTCAGACGTAAAGCTCATGTTTAAAATCC
196 CTCTCTAGAGTGGATATTGGTATTAGACATGTGATTCTCAGACGCAAAGATCATGCTTAAAATCA
* * *
7548449 GTGCTGAAGCAATAGA-AGGTATCTTTGAAGATTCAACATCAAATGTTGGGGCATCTTTTGAGGT
261 GTGCCGAAGCAATAGAGA-GCATCTTTGAAGATTCAACATCAAATGTTAGGGCATCTTTTGAGGT
* * *
7548513 TCAACATCGAATATCGAGGTATATTTGGGAATTCAATATCCTGGTGCGGATTATCAGATCTTCTT
325 TCAACATCGAATATCGAGGCATATTTAGGAATTCAATATCATGGTGCGGATTATCAGATCTTCTT
* *
7548578 GAGGTCTTTCCTCCACATGCAGGAACAAGAAGACAAAGAATGAGACTTCATTTAAGAAGAACTAA
390 GAGGTATTTCCTCCACATGCAGGAACAAGAAGACAAAGAATGAGACTCCATTTAAGAAGAACTAA
*
7548643 TTCATGTTGCATACATCTTAGACATACCTAAGAGCATCATATTTATCATGTTTAGCATACATGAT
455 TTCATGTTGCATACATCATAGACATACCTAAGAGCATCATATTTATCATGTTTAGCATACATGAT
*
7548708 TTTATTGCAGCTTTTAGAGTCCAGTTTCAACTTAAAGATGAAAGATACTCAATTCAAAAGCACAT
520 TTTATTACAGCTTTTAGAGTCCAGTTTCAACTTAAAGATGAAAGATACTCAATTCAAAAGCACAT
* *
7548773 TTAGAAATTTATGGTGGTTGCTCAACTTCACAGCGAAGGGGCGATTGTCAACAAACAAC
585 TCAGAAATTTATGGTGGTTGCTCAACTTCACAGCGAAGGGGCGACTGTCAACAAACAAC
7548832 TT
1 TT
7548834 TTCAGTTTCA
Statistics
Matches: 603, Mismatches: 40, Indels: 3
0.93 0.06 0.00
Matches are distributed among these distances:
641 1 0.00
642 590 0.98
643 12 0.02
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (643 bp):
TTATTAAAGGATTAACAATGTAATTAATTCTTTGATGTCCAATGAACTCTAGTTTTATGATTCGT
CTCAATTATAAAACCGAGAAAGGGGCAATATTTTCAAGACTTTTTGATCAAACATTTTTCAAAAC
TCTTCTAATTGATGTTTTCAGATCTTGAAAAAAGAAGAAGAAAAACACTTTTTAAACAAGACAAT
CTCTCTAGAGTGGATATTGGTATTAGACATGTGATTCTCAGACGCAAAGATCATGCTTAAAATCA
GTGCCGAAGCAATAGAGAGCATCTTTGAAGATTCAACATCAAATGTTAGGGCATCTTTTGAGGTT
CAACATCGAATATCGAGGCATATTTAGGAATTCAATATCATGGTGCGGATTATCAGATCTTCTTG
AGGTATTTCCTCCACATGCAGGAACAAGAAGACAAAGAATGAGACTCCATTTAAGAAGAACTAAT
TCATGTTGCATACATCATAGACATACCTAAGAGCATCATATTTATCATGTTTAGCATACATGATT
TTATTACAGCTTTTAGAGTCCAGTTTCAACTTAAAGATGAAAGATACTCAATTCAAAAGCACATT
CAGAAATTTATGGTGGTTGCTCAACTTCACAGCGAAGGGGCGACTGTCAACAAACAAC
Found at i:7548993 original size:110 final size:108
Alignment explanation
Indices: 7548792--7549121 Score: 450
Period size: 110 Copynumber: 3.0 Consensus size: 108
7548782 TATGGTGGTT
7548792 GCTCAACTTCACAGCGAAGGGGCGAT---TGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCA
1 GCTCAACTTCACAGCGAAGGGGCGATAACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCA
* *
7548854 ATTTGAACTTTACAGCGAAAGATATTGGACTCGAGACAACACAA
66 ATTTCAACTTCACAGCGAAA-ATATTGGACTCGAGACAACACAA
* *
7548898 GCTCAACTTCACAGTGAAGGGGCGATAGACTATCAACAAACAACTTTTCAGTTTCATTCAGAGTC
1 GCTCAACTTCACAGCGAAGGGGCGATA-ACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
* * *
7548963 AATTTCAACTTCACAGTGAATAATACTGGACTCGAGATAACACAA
65 AATTTCAACTTCACAGCGAA-AATATTGGACTCGAGACAACACAA
* ** * *
7549008 GCTCAACTTCACGGCGAAGGGGCGACTAACTGTCAACAAACAACTTCCCAGTTTCATTTAAGAGC
1 GCTCAACTTCACAGCGAAGGGGCGA-TAACTGTCAACAAACAACTTTTCAGTTTCA-TTCAGAGT
* * *
7549073 CAATTTCAACTTCACGGCGAAGGATATTGGACTCGAAACAACACAA
64 CAATTTCAACTTCACAGCGAA-AATATTGGACTCGAGACAACACAA
7549119 GCT
1 GCT
7549122 TGGATTTCAA
Statistics
Matches: 196, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
106 25 0.13
110 120 0.61
111 51 0.26
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (108 bp):
GCTCAACTTCACAGCGAAGGGGCGATAACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCA
ATTTCAACTTCACAGCGAAAATATTGGACTCGAGACAACACAA
Found at i:7549291 original size:125 final size:124
Alignment explanation
Indices: 7549121--7549345 Score: 351
Period size: 125 Copynumber: 1.8 Consensus size: 124
7549111 CAACACAAGC
* * * * *
7549121 TTGGATTTCAACTTCACGACGAATGAAATTCAAGTCAAGGTTCAACTTCACGACGAAAGGGTCAT
1 TTGGATTTCAACTTCACGACGAAAGAAATCCAAGTCAAGGCTCAACTTCACAACGAAAGGGCCAT
*
7549186 CCACGGTTTTCAATTTCACGACGAAGGGAATCGTACACACATGTAGCATTCATCTTTAGA
66 CCACGG-TTTCAACTTCACGACGAAGGGAATCGTACACACATGTAGCATTCATCTTTAGA
* * *
7549246 TTGGATTTCAACTTCACGACGAAAGATATCCAATTCAAGGCTCAACTTCACAACGAATGGGCCAT
1 TTGGATTTCAACTTCACGACGAAAGAAATCCAAGTCAAGGCTCAACTTCACAACGAAAGGGCCAT
*
7549311 CCACGGTTTCAACTTCACGATGAAGGGAATCGTAC
66 CCACGGTTTCAACTTCACGACGAAGGGAATCGTAC
7549346 CCACCAGCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
124 27 0.30
125 63 0.70
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (124 bp):
TTGGATTTCAACTTCACGACGAAAGAAATCCAAGTCAAGGCTCAACTTCACAACGAAAGGGCCAT
CCACGGTTTCAACTTCACGACGAAGGGAATCGTACACACATGTAGCATTCATCTTTAGA
Found at i:7549510 original size:36 final size:36
Alignment explanation
Indices: 7549448--7549741 Score: 259
Period size: 36 Copynumber: 8.4 Consensus size: 36
7549438 AATTTACTCA
* *
7549448 AAACAAAGTTTTATCTCTCTTGAGACAGTTTCTCTTG
1 AAACAAA-TTTTGTCTCTCTTGAGACAGTTTCCCTTG
* *
7549485 AAACAAATTTTGTCTCTCTTTAGACAGTTTCCCTTT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
*
7549521 AAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
* *
7549557 AAACAAA--TTATCTCTCTTTAGACAGTTTCCCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
**** *
7549591 AAACAAATTTTGTCTCAAGAGAGACAGTTTCCCTCG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
* * * *
7549627 AAACAAA------ATCT-TTGA-ATATGTTTTACATT-
1 AAACAAATTTTGTCTCTCTTGAGACA-G-TTTCCCTTG
* * * **
7549656 AAACAAATTTCGTCTCCCTTGAGACCGTTTCTTTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
* * *
7549692 GAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTG
1 AAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
7549729 AAACAAATTTTGT
1 AAACAAATTTTGT
7549742 TTTTGTCTCA
Statistics
Matches: 203, Mismatches: 40, Indels: 29
0.75 0.15 0.11
Matches are distributed among these distances:
28 2 0.01
29 10 0.05
30 7 0.03
34 31 0.15
35 7 0.03
36 108 0.53
37 38 0.19
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (36 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
Found at i:7549555 original size:15 final size:15
Alignment explanation
Indices: 7549535--7549591 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
7549525 AAATTTTGTC
7549535 TCCCTTGAGACAGTT
1 TCCCTTGAGACAGTT
* *
7549550 TCCCTTGAAACAAATT
1 TCCCTTGAGAC-AGTT
*
7549566 ATCTCTCTTTAGACAGTT
1 -TC-C-CTTGAGACAGTT
7549584 TCCCTTGA
1 TCCCTTGA
7549592 AACAAATTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
15 14 0.44
16 4 0.12
17 4 0.12
18 4 0.12
19 6 0.19
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.37
Consensus pattern (15 bp):
TCCCTTGAGACAGTT
Found at i:7549599 original size:70 final size:70
Alignment explanation
Indices: 7549448--7549741 Score: 260
Period size: 70 Copynumber: 4.2 Consensus size: 70
7549438 AATTTACTCA
* * * * *
7549448 AAACAAAGTTTTATCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTTAGACAGT
1 AAACAAA-TTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAA--TTATCTCTCTTGAGACAGT
*
7549513 TTCCCTTT
63 TTCCCTTG
*
7549521 AAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTATCTCTCTTTAGACAGTTTC
1 AAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTATCTCTCTTGAGACAGTTTC
7549586 CCTTG
66 CCTTG
**** * *
7549591 AAACAAATTTTGTCTCAAGAGAGACAGTTTCCCTCGAAACAAA--A--TCT-TTGA-ATATGTTT
1 AAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTATCTCTCTTGAGACA-G-TT
* *
7549650 TACATT-
64 TCCCTTG
* * ** * * *
7549656 AAACAAATTTCGTCTCCCTTGAGACCGTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGT
1 AAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAAC-AA--ATTATCTCTCTTGAGACAGT
*
7549721 TTCTCTTG
63 TTCCCTTG
7549729 AAACAAATTTTGT
1 AAACAAATTTTGT
7549742 TTTTGTCTCA
Statistics
Matches: 178, Mismatches: 31, Indels: 24
0.76 0.13 0.10
Matches are distributed among these distances:
64 2 0.01
65 34 0.19
66 11 0.06
68 1 0.01
70 63 0.35
72 41 0.23
73 24 0.13
74 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (70 bp):
AAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTATCTCTCTTGAGACAGTTTC
CCTTG
Found at i:7550044 original size:84 final size:84
Alignment explanation
Indices: 7549896--7550064 Score: 239
Period size: 84 Copynumber: 2.0 Consensus size: 84
7549886 GAAACACCAA
** *
7549896 ACCTTCGAGTTCGGTTACACTCAGCTCAAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAG
1 ACCTTCGAGTTCGACTACACTCAGCTCAAAGGCACATCATTTGCAACATAACTCAAGGCAAGAAG
*
7549961 GGCTATTTGCCAACCAAAG
66 GGCTATCTGCCAACCAAAG
* * * * * * *
7549980 ACCTTCGAGTTCGACTACGCTCAGCTCTAAGGCATATCATTTGCAGCATAACTTAAGTCGAGAAG
1 ACCTTCGAGTTCGACTACACTCAGCTCAAAGGCACATCATTTGCAACATAACTCAAGGCAAGAAG
7550045 GGCTATCTGCCAACCAAAG
66 GGCTATCTGCCAACCAAAG
7550064 A
1 A
7550065 TCTGACGAGT
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
84 74 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.22
Consensus pattern (84 bp):
ACCTTCGAGTTCGACTACACTCAGCTCAAAGGCACATCATTTGCAACATAACTCAAGGCAAGAAG
GGCTATCTGCCAACCAAAG
Found at i:7550333 original size:22 final size:19
Alignment explanation
Indices: 7550306--7550346 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
7550296 GTTTAAAAAA
* *
7550306 TATTATTTATT-TATTTAT
1 TATTATTTATTATTTTTTT
7550324 TATTATTTATTATTTTTTT
1 TATTATTTATTATTTTTTT
7550343 TATT
1 TATT
7550347 TTGTCCCGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (19 bp):
TATTATTTATTATTTTTTT
Found at i:7552404 original size:26 final size:26
Alignment explanation
Indices: 7552348--7552404 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
7552338 TGAAATAATT
* * *
7552348 TATAATTGTTATGATTTTTTTTGTTA
1 TATAATTGTTATGATTTCTTTAGGTA
*
7552374 CATAATTGTTATGA-TTCTTTAGAGTA
1 TATAATTGTTATGATTTCTTTAG-GTA
7552400 TATAA
1 TATAA
7552405 AGATGACCGA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.30, C:0.04, G:0.12, T:0.54
Consensus pattern (26 bp):
TATAATTGTTATGATTTCTTTAGGTA
Found at i:7558255 original size:25 final size:24
Alignment explanation
Indices: 7558227--7558306 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 24
7558217 ATTTTTTAAC
7558227 ATTTTATAAATATTTTTAAATTTTG
1 ATTTTAT-AATATTTTTAAATTTTG
* * *
7558252 ATTTTTTAATA-ATTTATCATTTTG
1 ATTTTATAATATTTTTA-AATTTTG
* * *
7558276 TAATTTCTAATATTTTTATATTTT-
1 -ATTTTATAATATTTTTAAATTTTG
7558300 ATTTTAT
1 ATTTTAT
7558307 TTTTATTTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
23 9 0.21
24 10 0.23
25 20 0.47
26 4 0.09
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (24 bp):
ATTTTATAATATTTTTAAATTTTG
Found at i:7561605 original size:36 final size:37
Alignment explanation
Indices: 7561524--7561605 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
7561514 GTAATCAACT
* *
7561524 TTGAAAAATTGGTTTTCAAAGTTTGGTAAATGTTTCT
1 TTGAAAAATAGGTTTTCAAAGTTTGGTAAATGTTTCG
* * *
7561561 TTAAAAAATAGTTTTTCAAAGTTTGGTAGATGTTT-G
1 TTGAAAAATAGGTTTTCAAAGTTTGGTAAATGTTTCG
7561597 TTGAAAAAT
1 TTGAAAAAT
7561606 GATAATGGGA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
36 8 0.21
37 31 0.79
ACGTcount: A:0.34, C:0.04, G:0.18, T:0.44
Consensus pattern (37 bp):
TTGAAAAATAGGTTTTCAAAGTTTGGTAAATGTTTCG
Found at i:7562034 original size:16 final size:17
Alignment explanation
Indices: 7562013--7562044 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7562003 TTACTATTCA
7562013 CGTGAATAGT-AAATTT
1 CGTGAATAGTGAAATTT
7562029 CGTGAATAGTGAAATT
1 CGTGAATAGTGAAATT
7562045 CGGTCGGCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.34
Consensus pattern (17 bp):
CGTGAATAGTGAAATTT
Found at i:7566159 original size:36 final size:38
Alignment explanation
Indices: 7566106--7566179 Score: 116
Period size: 37 Copynumber: 2.0 Consensus size: 38
7566096 TGGTAACCAA
*
7566106 CTTTGAAAAAAT-GGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAAATAGTTTTTCAAAGTTTGGTAAATGTTT
*
7566143 CTTTG-AAAAATAGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAAATAGTTTTTCAAAGTTTGGTAAATGTTT
7566180 GTCGAAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 6 0.18
37 28 0.82
ACGTcount: A:0.31, C:0.05, G:0.19, T:0.45
Consensus pattern (38 bp):
CTTTGAAAAAATAGTTTTTCAAAGTTTGGTAAATGTTT
Found at i:7566187 original size:36 final size:36
Alignment explanation
Indices: 7566112--7566190 Score: 106
Period size: 37 Copynumber: 2.2 Consensus size: 36
7566102 CCAACTTTGA
* *
7566112 AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
1 AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCGTCG
* *
7566148 AAAAATAGTTTTTCAAAGTTTGGTAGATGTTT-GTCG
1 AAAAAT-GGTTTTCAAAGTTTGGTAAATGTTTCGTCG
7566184 AAAAATG
1 AAAAATG
7566191 ATAATAGGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 1 0.03
36 14 0.37
37 23 0.61
ACGTcount: A:0.34, C:0.05, G:0.20, T:0.41
Consensus pattern (36 bp):
AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCGTCG
Found at i:7566545 original size:45 final size:45
Alignment explanation
Indices: 7566481--7566571 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
7566471 CATTCTCACT
*
7566481 AATCTGGTTATAGGGAAATTACTTG-TACTTGGTTTATTTCCCAAC
1 AATCTGGTAATAGGGAAATTACTTGTTA-TTGGTTTATTTCCCAAC
7566526 AATCTGGTAATAGGGAAATTACTTGTTATTGGTTTATTTCCCAAC
1 AATCTGGTAATAGGGAAATTACTTGTTATTGGTTTATTTCCCAAC
7566571 A
1 A
7566572 GATATGTATA
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
45 42 0.95
46 2 0.05
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.40
Consensus pattern (45 bp):
AATCTGGTAATAGGGAAATTACTTGTTATTGGTTTATTTCCCAAC
Found at i:7577274 original size:2 final size:2
Alignment explanation
Indices: 7577269--7577306 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
7577259 TTAAAAAAAT
7577269 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7577307 AACAAGTGGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7577596 original size:15 final size:15
Alignment explanation
Indices: 7577576--7577671 Score: 176
Period size: 15 Copynumber: 6.5 Consensus size: 15
7577566 TAATAAGGTT
7577576 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
7577591 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
7577606 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
7577621 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
7577636 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
7577651 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
7577665 ATTTATT
1 ATTTATT
7577672 AGTATGGATT
Statistics
Matches: 79, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
14 12 0.15
15 67 0.85
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:7577690 original size:22 final size:22
Alignment explanation
Indices: 7577674--7577716 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7577664 AATTTATTAG
7577674 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
*
7577696 TATTGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
7577717 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:7577692 original size:32 final size:32
Alignment explanation
Indices: 7577651--7577940 Score: 228
Period size: 32 Copynumber: 9.4 Consensus size: 32
7577641 TTTTAAAATA
7577651 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
7577683 ATTTATTTT--A-AA---A-TA-T-T-GATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
7577705 ATTTATTTTAAATAATTTATTAGTATCGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
7577737 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
7577759 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
* * *
7577791 ATTTATTTTAAAATATAGATTGATTTATTATTGTAGTTG
1 ATTTATTTT--AA-ATA-ATTTA-TTAGTA-TGGA-TTG
** * * *
7577830 TATAGATTGATT-TATTATTGTAGTT-GTATAGATTG
1 -ATTTATT--TTAAATAATT-TA-TTAGTATGGATTG
7577865 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
7577897 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
7577929 ATTTATTTTAAA
1 ATTTATTTTAAA
7577941 ATATGGATTG
Statistics
Matches: 206, Mismatches: 19, Indels: 66
0.71 0.07 0.23
Matches are distributed among these distances:
22 27 0.13
23 5 0.02
24 2 0.01
25 5 0.02
26 4 0.02
28 4 0.02
29 5 0.02
30 2 0.01
31 7 0.03
32 93 0.45
33 5 0.02
34 7 0.03
35 6 0.03
36 6 0.03
37 10 0.05
38 8 0.04
39 3 0.01
40 5 0.02
42 2 0.01
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.53
Consensus pattern (32 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTG
Found at i:7577717 original size:54 final size:54
Alignment explanation
Indices: 7577651--7578257 Score: 507
Period size: 54 Copynumber: 11.1 Consensus size: 54
7577641 TTTTAAAATA
*
7577651 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATTGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
7577705 ATTTATTTTAAATAATTTATTAGTATCGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
7577759 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* * * * * *** *
7577813 ATTTATTATT--GTAGTTGTA-TAG-ATTGATTTA-TTATTGTAGTTGTATAGATTG
1 ATTTATT-TTAAATAATT-TATTAGTATGGATTGATTTATTTTA-AAATATGGATTG
*
7577865 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-AAATA---ATTT
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* * * * * ***
7577915 A-TTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATTATTCTAGTTGTATGGATTG
1 ATTTA-TTTTAAATAATTTA--TT--AGTATGGATTGATTTA-T-TT-TA-AAATATGGATTG
* *
7577977 ATTTATTTTAAATAATTTATTAGTATGGATTTATTTGTTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
7578031 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* * * * * *
7578085 ATTTATTATT--GTAGTTGTA-T-GTATTGATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATT-TTAAATAATT-TATTAGTATGGATTGA-TTT--AT--TTTA-AAATATGGATTG
* * * * *
7578143 ATTTATTTT-AA-AA--TA-TAG-ATTGATTTATTTTAAATAATTTATTAGTATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGA-TTT--AT--TTTA-AAATATGGATTG
* *
7578197 ATTTATTTTAAATCATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
7578251 ATTTATT
1 ATTTATT
7578258 ATTGTAGTTG
Statistics
Matches: 455, Mismatches: 60, Indels: 76
0.77 0.10 0.13
Matches are distributed among these distances:
49 3 0.01
50 14 0.03
51 9 0.02
52 36 0.08
53 24 0.05
54 267 0.59
55 22 0.05
56 5 0.01
57 11 0.02
58 31 0.07
59 7 0.02
60 9 0.02
62 14 0.03
63 3 0.01
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (54 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
Found at i:7577833 original size:26 final size:26
Alignment explanation
Indices: 7577804--7577871 Score: 136
Period size: 26 Copynumber: 2.6 Consensus size: 26
7577794 TATTTTAAAA
7577804 TATAGATTGATTTATTATTGTAGTTG
1 TATAGATTGATTTATTATTGTAGTTG
7577830 TATAGATTGATTTATTATTGTAGTTG
1 TATAGATTGATTTATTATTGTAGTTG
7577856 TATAGATTGATTTATT
1 TATAGATTGATTTATT
7577872 TTAAATAATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.28, C:0.00, G:0.18, T:0.54
Consensus pattern (26 bp):
TATAGATTGATTTATTATTGTAGTTG
Found at i:7577902 original size:18 final size:18
Alignment explanation
Indices: 7577879--7577935 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
7577869 ATTTTAAATA
*
7577879 ATTTATTAGTATGGATTG
1 ATTTATTAGTATGAATTG
* *
7577897 ATTTATT--T-T-AAATA
1 ATTTATTAGTATGAATTG
7577911 ATTTATTAGTATGAATTG
1 ATTTATTAGTATGAATTG
7577929 ATTTATT
1 ATTTATT
7577936 TTAAAATATG
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
14 9 0.30
15 1 0.03
16 2 0.07
17 1 0.03
18 17 0.57
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.54
Consensus pattern (18 bp):
ATTTATTAGTATGAATTG
Found at i:7578018 original size:32 final size:32
Alignment explanation
Indices: 7577967--7578074 Score: 128
Period size: 32 Copynumber: 3.7 Consensus size: 32
7577957 TATTCTAGTT
7577967 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* *
7577999 GTATGGATTTATTT-GTTT---TAA---A--A
1 GTATGGATTGATTTATTTTAAATAATTTATTA
7578022 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
7578053 GTATGGATTGATTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
7578075 ATATAGATTG
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
22 12 0.19
23 4 0.06
25 1 0.02
26 3 0.05
28 3 0.05
29 1 0.02
31 4 0.06
32 34 0.55
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATTTATTA
Found at i:7578028 original size:22 final size:22
Alignment explanation
Indices: 7578000--7578042 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7577990 AATTTATTAG
* *
7578000 TATGGATTTATTTGTTTTAAAA
1 TATGGATTGATTTATTTTAAAA
7578022 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
7578043 TAATTTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:7578078 original size:134 final size:134
Alignment explanation
Indices: 7577700--7578208 Score: 774
Period size: 134 Copynumber: 3.8 Consensus size: 134
7577690 TTAAAATATT
*
7577700 GATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
7577765 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTATTATTGTAGTTG
66 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTATTATTGTAGTTG
*
7577830 TATA
131 TATG
* * * * * *
7577834 GATTGATTTATTATT--GTAGTTGTA-TAG-ATTGATTTATTTTAAATAATTTATTAGTATGGAT
1 GATTGATTTATT-TTAAATAATT-TATTAGTATGGATTGA-TTT--AT--TTTA-AAATATGGAT
* *
7577895 TGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATTAT
58 TGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTATTAT
*
7577960 TCTAGTTGTATG
123 TGTAGTTGTATG
* *
7577972 GATTGATTTATTTTAAATAATTTATTAGTATGGATTTATTTGTTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
7578037 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTATTATTGTAGTTG
66 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTATTATTGTAGTTG
7578102 TATG
131 TATG
* *
7578106 TATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
*
7578171 TTTAAATAATTTATTAGTATAGATTGATTTATTTTAAA
66 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
7578209 TCATTTATTT
Statistics
Matches: 339, Mismatches: 24, Indels: 24
0.88 0.06 0.06
Matches are distributed among these distances:
132 7 0.02
133 10 0.03
134 194 0.57
135 8 0.02
137 7 0.02
138 95 0.28
139 10 0.03
140 8 0.02
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (134 bp):
GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTATTATTGTAGTTG
TATG
Found at i:7578088 original size:80 final size:81
Alignment explanation
Indices: 7577678--7578338 Score: 617
Period size: 80 Copynumber: 8.1 Consensus size: 81
7577668 TATTAGTATG
* * * * *
7577678 GATTGATTTATTTTA-AAATATTGATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTA
1 GATTTATTTATTTTAGTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA
*
7577742 TTTTAAAATATGGATT
66 TTTTAAAATATAGATT
* * *
7577758 GATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-AA-AA--TA-TAG-ATTGATTT
1 GATTTA-TTT--AT--TTTAGTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTG
* ***
7577817 A-TTATTGTAGTTGTATAGATT
61 ATTTATTTTA-AAATATAGATT
* * *
7577838 GATTTA-TTATTGTAGTTGTATAGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA
1 GATTTATTTATTTTAGTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA
7577902 TTTTAAATAATTTATTAG-TAT
66 TTTT-AA-AA--TA-TAGAT-T
* * * *
7577923 GAATTGATTTATTTTA-AAATATGGATTGATTTA--TT--AT--TCTAGTT-GTATGGATTGATT
1 G-ATTTATTTATTTTAGTAGTATGGATTGATTTATTTTAAATAATTTA-TTAGTATGGATTGATT
*
7577980 TATTTTAAATAATTTATTAGTATG
64 TATTTT-AA-AA--TA-TAG-ATT
* * *
7578004 GATTTATTTGTTTTA-AAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA
1 GATTTATTTATTTTAGTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA
7578068 TTTTAAAATATAGATT
66 TTTTAAAATATAGATT
* * *
7578084 GATTTA-TTATTGTAGTTGTATGTATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA
1 GATTTATTTATTTTAGTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA
7578148 TTTTAAAATATAGATT
66 TTTTAAAATATAGATT
* * * *
7578164 GATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAATCATTTATTTGTATGGATTG
1 GATTTA-TTT--AT--TTTAGTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTG
*
7578229 ATTTATTTTAAAATATGGATT
61 ATTTATTTTAAAATATAGATT
* * * *
7578250 GATTTA-TTATTGTAGTTGTATAGATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTA
1 GATTTATTTATTTTAGTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA
*
7578314 TTTTAAAATATGGATT
66 TTTTAAAATATAGATT
7578330 GATTTATTT
1 GATTTATTT
7578339 TAAATAATTT
Statistics
Matches: 488, Mismatches: 53, Indels: 79
0.79 0.09 0.13
Matches are distributed among these distances:
74 22 0.05
75 2 0.00
76 4 0.01
78 4 0.01
79 16 0.03
80 242 0.50
81 20 0.04
82 14 0.03
83 2 0.00
84 15 0.03
85 15 0.03
86 125 0.26
87 7 0.01
ACGTcount: A:0.33, C:0.01, G:0.13, T:0.53
Consensus pattern (81 bp):
GATTTATTTATTTTAGTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA
TTTTAAAATATAGATT
Found at i:7578143 original size:32 final size:32
Alignment explanation
Indices: 7578101--7578240 Score: 174
Period size: 32 Copynumber: 4.7 Consensus size: 32
7578091 TATTGTAGTT
*
7578101 GTATGTATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
7578133 GTATGGATTGATTTATTTT--A-AA---A-TA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
7578158 -TA--GATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* * *
7578187 GTATAGATTGATTTATTTTAAATCATTTATTT
1 GTATGGATTGATTTATTTTAAATAATTTATTA
7578219 GTATGGATTGATTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
7578241 ATATGGATTG
Statistics
Matches: 94, Mismatches: 4, Indels: 20
0.80 0.03 0.17
Matches are distributed among these distances:
22 14 0.15
24 3 0.03
25 4 0.04
26 1 0.01
28 1 0.01
29 4 0.04
30 3 0.03
32 64 0.68
ACGTcount: A:0.34, C:0.01, G:0.11, T:0.54
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATTTATTA
Found at i:7578217 original size:166 final size:166
Alignment explanation
Indices: 7577700--7578352 Score: 610
Period size: 166 Copynumber: 4.0 Consensus size: 166
7577690 TTAAAATATT
* *
7577700 GATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTA-
* * * *
7577765 TTTAAATAATTTA-TTAGTATGGATTGATTTATTTT-AA-AA--TA-TAG-ATTGATTTA-TTAT
65 -TT--AT--TGTAGTT-GTATAGATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTAT
* *** *
7577822 TGTAGTTGTATAGATTGATTTA--TT--AT--TGTAGTT-GTATA
124 TTTA-AAATATAGATTGATTTATTTTAAATAATTTA-TTAGTATA
** *
7577860 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-AAATAATTTATTAGTATG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAAT-ATAGATT-G-ATT
* * * * * *
7577924 AATTGATT-TA-TTTTA-AAATATGGATTGA-TTT--ATTATTCTAGTT-GTATGGATTGATTTA
63 TATT-ATTGTAGTTGTATAGAT-T-GATTTATTTTAAATAATT-TA-TTAGTATCGATTGATTTA
* * * * *
7577982 TTTTAAATAATTTATTAGTATGGATTTA-TTT--GT--TTTA-AAATATG
123 TTTT-AA-AA--TA-TAG-ATTGATTTATTTTAAATAATTTATTAGTATA
7578026 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTAT
*
7578091 TATTGTAGTTGTAT-GTATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
66 TATTGTAGTTGTATAG-ATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTATTTTAAA
7578155 ATATAGATTGATTTATTTTAAATAATTTATTAGTATA
130 ATATAGATTGATTTATTTTAAATAATTTATTAGTATA
* * *
7578192 GATTGATTTATTTTAAATCATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTAT
7578257 TATTGTAGTTGTATAGATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTATTTTAAAA
66 TATTGTAGTTGTATAGATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTATTTTAAAA
*
7578322 TATGGATTGATTTATTTTAAATAATTTATTA
131 TATAGATTGATTTATTTTAAATAATTTATTA
7578353 TTGTAGTTGT
Statistics
Matches: 415, Mismatches: 41, Indels: 68
0.79 0.08 0.13
Matches are distributed among these distances:
154 3 0.01
155 7 0.02
156 9 0.02
157 1 0.00
158 2 0.00
159 7 0.02
160 68 0.16
161 13 0.03
162 6 0.01
163 4 0.01
164 16 0.04
165 20 0.05
166 243 0.59
167 16 0.04
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.53
Consensus pattern (166 bp):
GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTAT
TATTGTAGTTGTATAGATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTATTTTAAAA
TATAGATTGATTTATTTTAAATAATTTATTAGTATA
Found at i:7578339 original size:54 final size:54
Alignment explanation
Indices: 7577892--7578352 Score: 264
Period size: 54 Copynumber: 8.5 Consensus size: 54
7577882 TATTAGTATG
* *
7577892 GATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATA
*
7577946 GATTGATTTA--TT--AT--TCTAGTT-GTATGGATTGATTTATTTTAAATAATTTATTA
1 GATTGATTTATTTTAAATAATTTA-TTAGTATGGATTGATTTATTTT-AA-AA--TA-TA
* * * *
7577999 GTATGGATTTA-TTT--GT--TTTA-AAATATGGATTGATTTATTTTAAATAATTTATTA
1 G-ATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-AA-AA--TA-TA
* * * * * * ** *
7578053 GTATGGATTGA-TTT--AT--TTTA-AAATATAGATTGATTTATTATTGTAGTTGTA
1 G-ATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATT-TT-AAAATATA
7578104 TGTATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATA
1 -G-ATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATA
* *
7578160 GATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAATCATTTA
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA--ATATA
* ** * ** * * * ***
7578216 -TTTGTATGGA-TTGATTTATTTTA-AAATATGGATTGATTTATTATTGTAGTTGTATA
1 GATTG-ATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-T-TT-TA-AAATATA
* *
7578272 GATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTATTTTAAAATATG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATA
7578326 GATTGATTTATTTTAAATAATTTATTA
1 GATTGATTTATTTTAAATAATTTATTA
7578353 TTGTAGTTGT
Statistics
Matches: 325, Mismatches: 55, Indels: 54
0.75 0.13 0.12
Matches are distributed among these distances:
48 21 0.06
49 4 0.01
50 4 0.01
51 2 0.01
52 14 0.04
53 5 0.02
54 176 0.54
55 27 0.08
56 21 0.06
57 21 0.06
58 30 0.09
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.53
Consensus pattern (54 bp):
GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATA
Found at i:7578402 original size:31 final size:31
Alignment explanation
Indices: 7578367--7578425 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
7578357 AGTTGTATGG
* *
7578367 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATCTCAGTATTGCAAAACTAAA
7578398 ATTATTTAAATCTCAGTATTGCAAAACT
1 ATTATTTAAATCTCAGTATTGCAAAACT
7578426 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATCTCAGTATTGCAAAACTAAA
Found at i:7579135 original size:20 final size:21
Alignment explanation
Indices: 7579095--7579141 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
7579085 TACTGAAAAC
*
7579095 ATTATTATTTCTATCAATTTT
1 ATTATTATTTCTATAAATTTT
*
7579116 ATTATT-TTTTTATAAATTTT
1 ATTATTATTTCTATAAATTTT
7579136 ATTATT
1 ATTATT
7579142 GTTATGCACT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (21 bp):
ATTATTATTTCTATAAATTTT
Found at i:7580895 original size:29 final size:29
Alignment explanation
Indices: 7580853--7580911 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
7580843 ATTTTCACCT
7580853 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
7580882 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
7580911 A
1 A
7580912 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:7585577 original size:29 final size:29
Alignment explanation
Indices: 7585535--7585593 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
7585525 ATTTTCACCT
7585535 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
7585564 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
7585593 A
1 A
7585594 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:7589893 original size:2 final size:2
Alignment explanation
Indices: 7589886--7589921 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
7589876 GGAAATTTCA
7589886 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7589922 GTGGTAGATC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7597297 original size:28 final size:28
Alignment explanation
Indices: 7597266--7597323 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
7597256 CCAGAACCCC
*
7597266 ATAACCTCTAAACCTTAAACTCTAAACT
1 ATAACCTCTAAACCTTAAACCCTAAACT
* *
7597294 ATAACCTTTAAACTTTAAACCCTAAACT
1 ATAACCTCTAAACCTTAAACCCTAAACT
7597322 AT
1 AT
7597324 GATATCTAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.31
Consensus pattern (28 bp):
ATAACCTCTAAACCTTAAACCCTAAACT
Found at i:7601517 original size:237 final size:237
Alignment explanation
Indices: 7601102--7601573 Score: 935
Period size: 237 Copynumber: 2.0 Consensus size: 237
7601092 ACCTTTCCAG
7601102 CAATCAATCAACATAAAATAATCAATTTCTTCTCCTCTCTACAAAATTCTCATCGACTAGGTATA
1 CAATCAATCAACATAAAATAATCAATTTCTTCTCCTCTCTACAAAATTCTCATCGACTAGGTATA
7601167 AACTAAAATGAAGAACCCTAAATACCCGATAAACCCCAAATTTTACGAACCGGGATAAGGGAAAT
66 AACTAAAATGAAGAACCCTAAATACCCGATAAACCCCAAATTTTACGAACCGGGATAAGGGAAAT
7601232 AAAGAAGTAGTTACCTCTCAGCCCTAGAATAACGCTTCTCTTGCTCAGACAACTGAATCGGTACA
131 AAAGAAGTAGTTACCTCTCAGCCCTAGAATAACGCTTCTCTTGCTCAGACAACTGAATCGGTACA
7601297 CCAAACCGCTCAGCTCGGAGAATCTTCTTCAGGATATCGTAA
196 CCAAACCGCTCAGCTCGGAGAATCTTCTTCAGGATATCGTAA
*
7601339 CAATCAATCAACATAAAATAATCAATTTCTTCTCTTCTCTACAAAATTCTCATCGACTAGGTATA
1 CAATCAATCAACATAAAATAATCAATTTCTTCTCCTCTCTACAAAATTCTCATCGACTAGGTATA
7601404 AACTAAAATGAAGAACCCTAAATACCCGATAAACCCCAAATTTTACGAACCGGGATAAGGGAAAT
66 AACTAAAATGAAGAACCCTAAATACCCGATAAACCCCAAATTTTACGAACCGGGATAAGGGAAAT
7601469 AAAGAAGTAGTTACCTCTCAGCCCTAGAATAACGCTTCTCTTGCTCAGACAACTGAATCGGTACA
131 AAAGAAGTAGTTACCTCTCAGCCCTAGAATAACGCTTCTCTTGCTCAGACAACTGAATCGGTACA
7601534 CCAAACCGCTCAGCTCGGAGAATCTTCTTCAGGATATCGT
196 CCAAACCGCTCAGCTCGGAGAATCTTCTTCAGGATATCGT
7601574 TAACGGGGCA
Statistics
Matches: 234, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
237 234 1.00
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.25
Consensus pattern (237 bp):
CAATCAATCAACATAAAATAATCAATTTCTTCTCCTCTCTACAAAATTCTCATCGACTAGGTATA
AACTAAAATGAAGAACCCTAAATACCCGATAAACCCCAAATTTTACGAACCGGGATAAGGGAAAT
AAAGAAGTAGTTACCTCTCAGCCCTAGAATAACGCTTCTCTTGCTCAGACAACTGAATCGGTACA
CCAAACCGCTCAGCTCGGAGAATCTTCTTCAGGATATCGTAA
Found at i:7602822 original size:15 final size:16
Alignment explanation
Indices: 7602796--7602834 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
7602786 TTTGTAAAAA
7602796 AAATTATAAATTTTAT
1 AAATTATAAATTTTAT
*
7602812 AAATT-TAAATTTTTT
1 AAATTATAAATTTTAT
*
7602827 AAAATATA
1 AAATTATA
7602835 TATATAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AAATTATAAATTTTAT
Found at i:7603546 original size:22 final size:24
Alignment explanation
Indices: 7603495--7603554 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 24
7603485 AATATACTTG
** *
7603495 TATGACACGTTTTTCTTATGTCTT
1 TATGACATATTTTTCTTATGTATT
*
7603519 TATGACAT-TTTTTCTTCTGTATT
1 TATGACATATTTTTCTTATGTATT
7603542 T-TGACATATTTTT
1 TATGACATATTTTT
7603555 TTGGTTGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 6 0.19
23 19 0.59
24 7 0.22
ACGTcount: A:0.18, C:0.13, G:0.10, T:0.58
Consensus pattern (24 bp):
TATGACATATTTTTCTTATGTATT
Found at i:7617745 original size:11 final size:11
Alignment explanation
Indices: 7617724--7617753 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7617714 ATTTGTTCAA
7617724 ATAAT-TAAAT
1 ATAATATAAAT
7617734 ATAATATAAAT
1 ATAATATAAAT
7617745 ATAATATAA
1 ATAATATAA
7617754 TAAAAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.26
11 14 0.74
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
ATAATATAAAT
Found at i:7618661 original size:22 final size:22
Alignment explanation
Indices: 7618633--7618677 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
7618623 AGGCATCTCT
7618633 GGCATAAAAGAACATTTAAAGA
1 GGCATAAAAGAACATTTAAAGA
7618655 GGCATAAAAGAACATTTAAAGA
1 GGCATAAAAGAACATTTAAAGA
7618677 G
1 G
7618678 TATGTGAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.53, C:0.09, G:0.20, T:0.18
Consensus pattern (22 bp):
GGCATAAAAGAACATTTAAAGA
Found at i:7618884 original size:49 final size:49
Alignment explanation
Indices: 7618812--7618908 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 49
7618802 TGATTGAAAG
*
7618812 ATCGTTGTTATTCTTAGAGGTTATGATTCGAGCACCAA-CAACTGCAAAA
1 ATCGTTGTTATTCTTAGAGGTTATGATTCGAGCA-CAAGCAACTACAAAA
*
7618861 ATCGTTGTTATTCTTAGAGGTTATTATTCGAGCACAAGCAACTACAAA
1 ATCGTTGTTATTCTTAGAGGTTATGATTCGAGCACAAGCAACTACAAA
7618909 TGCAAAAGTG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
48 3 0.07
49 42 0.93
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Consensus pattern (49 bp):
ATCGTTGTTATTCTTAGAGGTTATGATTCGAGCACAAGCAACTACAAAA
Found at i:7627091 original size:2 final size:2
Alignment explanation
Indices: 7627084--7627115 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7627074 ATATGAAGAA
7627084 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7627116 CTTGTATGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7635873 original size:25 final size:25
Alignment explanation
Indices: 7635845--7635892 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
7635835 GCTTCATTAT
*
7635845 TGAAACTTGGTATTTCATAAATGAA
1 TGAAACTCGGTATTTCATAAATGAA
*
7635870 TGAATCTCGGTATTTCATAAATG
1 TGAAACTCGGTATTTCATAAATG
7635893 GAGAAAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (25 bp):
TGAAACTCGGTATTTCATAAATGAA
Found at i:7636323 original size:29 final size:29
Alignment explanation
Indices: 7636290--7636348 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
7636280 CAAAAATTAA
7636290 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
7636319 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
7636348 T
1 T
7636349 AGGTGAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.49
Consensus pattern (29 bp):
TTTGATGTCATTGCTTACATCAATTTAGT
Found at i:7640996 original size:29 final size:28
Alignment explanation
Indices: 7640970--7641036 Score: 82
Period size: 29 Copynumber: 2.4 Consensus size: 28
7640960 TGTTTACACC
7640970 TAAATTAAG-TTGATGTCATTGCTTACA
1 TAAATTAAGTTTGATGTCATTGCTTACA
* *
7640997 TCAATTTAGTTTTGATGTCATTGCTTACA
1 TAAATTAAG-TTTGATGTCATTGCTTACA
* *
7641026 TCAATTTAGTT
1 TAAATTAAGTT
7641037 AGGTGAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 7 0.19
28 2 0.06
29 27 0.75
ACGTcount: A:0.28, C:0.12, G:0.13, T:0.46
Consensus pattern (28 bp):
TAAATTAAGTTTGATGTCATTGCTTACA
Found at i:7653362 original size:2 final size:2
Alignment explanation
Indices: 7653355--7653381 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7653345 TAATAATTTA
7653355 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7653382 AAGTTTCAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7656207 original size:64 final size:64
Alignment explanation
Indices: 7656128--7656258 Score: 262
Period size: 64 Copynumber: 2.0 Consensus size: 64
7656118 GACTGCGGAA
7656128 GCATCATATCTGTAATGGTGCTGATTATGCTGTTTACATAAACACAGATGAAGAGTACACGATG
1 GCATCATATCTGTAATGGTGCTGATTATGCTGTTTACATAAACACAGATGAAGAGTACACGATG
7656192 GCATCATATCTGTAATGGTGCTGATTATGCTGTTTACATAAACACAGATGAAGAGTACACGATG
1 GCATCATATCTGTAATGGTGCTGATTATGCTGTTTACATAAACACAGATGAAGAGTACACGATG
7656256 GCA
1 GCA
7656259 GTGACTCCGG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (64 bp):
GCATCATATCTGTAATGGTGCTGATTATGCTGTTTACATAAACACAGATGAAGAGTACACGATG
Found at i:7658674 original size:17 final size:18
Alignment explanation
Indices: 7658638--7658678 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7658628 ATATTATGTA
*
7658638 TTTAATTTATTTAAGCAT
1 TTTACTTTATTTAAGCAT
*
7658656 TTTACTTTATTTAA-TAT
1 TTTACTTTATTTAAGCAT
7658673 TTTACT
1 TTTACT
7658679 AATATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTACTTTATTTAAGCAT
Found at i:7659504 original size:18 final size:18
Alignment explanation
Indices: 7659477--7659515 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
7659467 AGCCACTGCA
*
7659477 GCCATTTATGATGCCGCT
1 GCCATATATGATGCCGCT
7659495 GCCATATATGATGCCGCT
1 GCCATATATGATGCCGCT
7659513 GCC
1 GCC
7659516 TTTCCATTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.18, C:0.31, G:0.23, T:0.28
Consensus pattern (18 bp):
GCCATATATGATGCCGCT
Found at i:7660079 original size:26 final size:24
Alignment explanation
Indices: 7660008--7660079 Score: 62
Period size: 26 Copynumber: 3.0 Consensus size: 24
7659998 TTATATTTGT
7660008 ATTTACTTTATTTTGTTAAATTGTA
1 ATTTACTTTATTTTGTTAAATT-TA
*
7660033 ATTT--TTTATTATT-TCT-CATTTA
1 ATTTACTTTATT-TTGT-TAAATTTA
7660055 ATACTTACTTTATTTTGTTAAATTT
1 AT--TTACTTTATTTTGTTAAATTT
7660080 GTTAGACTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 15
0.69 0.04 0.28
Matches are distributed among these distances:
22 4 0.11
23 10 0.27
24 5 0.14
25 7 0.19
26 11 0.30
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.62
Consensus pattern (24 bp):
ATTTACTTTATTTTGTTAAATTTA
Found at i:7660147 original size:35 final size:33
Alignment explanation
Indices: 7660108--7660192 Score: 91
Period size: 35 Copynumber: 2.5 Consensus size: 33
7660098 GTATTTCAGT
7660108 TAATTTTGTT-TATTACCATTTAATATCAGTTATTG
1 TAATTTTGTTATATTACCATTTAAT-TC--TTATTG
*
7660143 TAATTTGGTTATCATTTACCATTTAATTCTTATTG
1 TAATTTTGTTAT-A-TTACCATTTAATTCTTATTG
* *
7660178 TAAGTTTGTTGTATT
1 TAATTTTGTTATATT
7660193 TAAAATTATA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
33 2 0.05
34 1 0.02
35 24 0.56
36 1 0.02
37 3 0.07
38 12 0.28
ACGTcount: A:0.26, C:0.08, G:0.11, T:0.55
Consensus pattern (33 bp):
TAATTTTGTTATATTACCATTTAATTCTTATTG
Found at i:7663402 original size:15 final size:15
Alignment explanation
Indices: 7663382--7663410 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7663372 ACCGCAAAAC
7663382 TATTTTGACGTATGT
1 TATTTTGACGTATGT
7663397 TATTTTGACGTATG
1 TATTTTGACGTATG
7663411 CTCATGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.52
Consensus pattern (15 bp):
TATTTTGACGTATGT
Found at i:7667071 original size:28 final size:28
Alignment explanation
Indices: 7667039--7667093 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
7667029 AAATTGGGAG
*
7667039 ATTC-TATAATCTCAAGTACCATTACTGT
1 ATTCTTATAATCTCAA-TACCATCACTGT
* *
7667067 ATTCTTATTATGTCAATACCATCACTG
1 ATTCTTATAATCTCAATACCATCACTG
7667094 CCGCTAGCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 14 0.61
29 9 0.39
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (28 bp):
ATTCTTATAATCTCAATACCATCACTGT
Found at i:7668350 original size:2 final size:2
Alignment explanation
Indices: 7668343--7668390 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
7668333 CATCAAAATT
7668343 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7668385 TA TA TA
1 TA TA TA
7668391 ATCAAGAAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7676146 original size:12 final size:12
Alignment explanation
Indices: 7676119--7676181 Score: 56
Period size: 12 Copynumber: 5.1 Consensus size: 12
7676109 TTATTGACAC
7676119 ATTTAA-AATAT
1 ATTTAATAATAT
*
7676130 ATTTATTAATAT
1 ATTTAATAATAT
*
7676142 TTTTAATAATAT
1 ATTTAATAATAT
*
7676154 AATATAATAATATT
1 -ATTTAATAATA-T
*
7676168 ATTACAATAATAT
1 ATT-TAATAATAT
7676181 A
1 A
7676182 CTCAATTATA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
11 5 0.12
12 15 0.37
13 13 0.32
14 8 0.20
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTTAATAATAT
Found at i:7676377 original size:23 final size:25
Alignment explanation
Indices: 7676333--7676383 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
7676323 GTATTTAATA
*
7676333 TTAATATAATAGTCTAATAATAT-T
1 TTAATATAAAAGTCTAATAATATAT
7676357 TTAATA-AAAAGTCATAA-AATATAT
1 TTAATATAAAAGTC-TAATAATATAT
7676381 TTA
1 TTA
7676384 TTAATAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (25 bp):
TTAATATAAAAGTCTAATAATATAT
Found at i:7676459 original size:16 final size:16
Alignment explanation
Indices: 7676405--7676459 Score: 56
Period size: 16 Copynumber: 3.1 Consensus size: 16
7676395 AAAAATATAA
7676405 TATAATATTTTTATTT
1 TATAATATTTTTATTT
*
7676421 TAATAGATATTTAATATAATT
1 T-ATA-ATATTT--T-TATTT
7676442 TATAATATTTTTATTT
1 TATAATATTTTTATTT
7676458 TA
1 TA
7676460 AAAGAATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
16 7 0.22
17 4 0.12
18 6 0.19
19 6 0.19
20 4 0.12
21 5 0.16
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
TATAATATTTTTATTT
Found at i:7679869 original size:14 final size:16
Alignment explanation
Indices: 7679844--7679878 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
7679834 TCCACCAACA
7679844 TCATCATAACCTA-CC
1 TCATCATAACCTATCC
7679859 TCATC-TAACCTATCC
1 TCATCATAACCTATCC
7679874 TCATC
1 TCATC
7679879 CTCCCTCCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.29, C:0.40, G:0.00, T:0.31
Consensus pattern (16 bp):
TCATCATAACCTATCC
Found at i:7682372 original size:229 final size:227
Alignment explanation
Indices: 7681972--7682414 Score: 780
Period size: 229 Copynumber: 1.9 Consensus size: 227
7681962 TATCTATCCA
* *
7681972 TTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGTTAATAT
1 TTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGTTAATAT
* *
7682037 TGTTAAATTTAAAATCTAAATAATATTTTATAAAATATTAAAACAATCAAATAATTTTTTGTGTA
66 TGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTTTGTGTA
7682102 AATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACAT
131 AATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACAT
7682167 AAATTACATAACTTTCAAAAAAGTATATATCAT
196 AAATTACATAACTTT-AAAAAAGTATATATCAT
*
7682200 TTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTATTATATTTGGTTAATA
1 TTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATTATTATATTTAGTTAATA
*
7682265 TTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAAT-ATAATTTTGTG
65 TTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAT-ATTTTGTG
* *
7682329 TAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAATTGAAAC
129 TAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAAC
7682394 ATAAATTACATAACTTTAAAA
194 ATAAATTACATAACTTTAAAA
7682415 GCAGTTTTAA
Statistics
Matches: 205, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
228 37 0.18
229 168 0.82
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (227 bp):
TTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGTTAATAT
TGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTTTGTGTA
AATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACAT
AAATTACATAACTTTAAAAAAGTATATATCAT
Found at i:7682503 original size:20 final size:19
Alignment explanation
Indices: 7682480--7682525 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
7682470 CGATATACCA
7682480 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
7682500 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
7682520 GGTAAA
1 GGTAAA
7682526 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:7682670 original size:20 final size:19
Alignment explanation
Indices: 7682647--7682693 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
7682637 CGATATAACA
7682647 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
7682667 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
7682687 GGTAAAA
1 GGTAAAA
7682694 TGATACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:7682695 original size:17 final size:18
Alignment explanation
Indices: 7682651--7682698 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 18
7682641 ATAACAGGTA
7682651 AAAATATGATAAAACCGGT
1 AAAA-ATGATAAAACCGGT
7682670 AACAAAATGATAAAACCGGT
1 -A-AAAATGATAAAACCGGT
7682690 -AAAATGATA
1 AAAAATGATA
7682699 CCGGATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 9 0.33
20 15 0.56
21 3 0.11
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.19
Consensus pattern (18 bp):
AAAAATGATAAAACCGGT
Found at i:7684972 original size:21 final size:21
Alignment explanation
Indices: 7684925--7684989 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
7684915 AAGACAATCA
* *
7684925 AGAGTCGAAGAGAAACTTGATC
1 AGAGTCGAAGAGAAACTCGA-G
*
7684947 A-AGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
* *
7684967 AGAGTCGAAGATACACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
7684988 AG
1 AG
7684990 GAATAAGGGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTCGAG
Found at i:7685065 original size:33 final size:33
Alignment explanation
Indices: 7685023--7685088 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
7685013 AAATAGATGG
*
7685023 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
7685056 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
7685089 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:7686907 original size:19 final size:19
Alignment explanation
Indices: 7686883--7686928 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
7686873 GTCGAGTTAT
7686883 TTTTGTATAAGATTTATAA
1 TTTTGTATAAGATTTATAA
* *
7686902 TTTTGTATACGATTTATAT
1 TTTTGTATAAGATTTATAA
7686921 TTTTGTAT
1 TTTTGTAT
7686929 GTGAATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.28, C:0.02, G:0.11, T:0.59
Consensus pattern (19 bp):
TTTTGTATAAGATTTATAA
Found at i:7688146 original size:198 final size:199
Alignment explanation
Indices: 7687047--7688616 Score: 3063
Period size: 199 Copynumber: 7.9 Consensus size: 199
7687037 CAATATGGCC
* *
7687047 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAATCATCGAAC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAAC
7687112 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
*
7687177 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCTAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAA
7687242 TGGAA
195 TGGAA
7687247 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7687312 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7687377 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
7687442 GGAA
196 GGAA
7687446 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7687511 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7687576 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
7687641 GGAA
196 GGAA
7687645 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
7687710 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGATACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7687775 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
7687840 GGAA
196 GGAA
7687844 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7687909 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7687974 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
7688039 GG-A
196 GGAA
7688042 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7688107 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7688172 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
7688237 GG-A
196 GGAA
*
7688240 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACT
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7688305 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7688370 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
7688435 GGAA
196 GGAA
*
7688439 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCCAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
7688504 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
7688569 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACT
7688617 AATTTAAATA
Statistics
Matches: 1361, Mismatches: 8, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
198 395 0.29
199 932 0.68
200 34 0.02
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.31
Consensus pattern (199 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
GGAA
Found at i:7690098 original size:3 final size:3
Alignment explanation
Indices: 7690090--7690164 Score: 69
Period size: 3 Copynumber: 25.0 Consensus size: 3
7690080 TGAAGCTGAC
* * * ** * *
7690090 GAT GAT GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA GAT GAT GAC GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
7690138 GAT GAT GAT GAT GAT GAA AAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT
7690165 CCAAACAAGT
Statistics
Matches: 55, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.36, C:0.05, G:0.33, T:0.25
Consensus pattern (3 bp):
GAT
Found at i:7691704 original size:183 final size:183
Alignment explanation
Indices: 7691364--7692241 Score: 1580
Period size: 183 Copynumber: 4.8 Consensus size: 183
7691354 CAAAGTTTTC
* ** * *
7691364 ACACTTTTTAATATTGTGTATGTACTTTATGTCCAGAATGAAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
* *
7691429 AAAAAAGTGTCG--ATTGAAAAAACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAA
66 AAAAAAGTGTCGACATT---TACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAA
*
7691492 TATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
128 TATAACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
7691548 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
*
7691613 AAAAAAGTGTCGACATTTACACATCGGAACCCATATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
*
7691678 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
7691731 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
*
7691796 AAAAAAGTGTCGACATTTACACATCGGAACCCATATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
*
7691861 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
131 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
7691914 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
7691979 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
*
7692044 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
131 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
7692097 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
7692162 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
7692227 AACCGGTATAAAAAT
131 AACCGGTATAAAAAT
7692242 GTGTCGATAC
Statistics
Matches: 680, Mismatches: 12, Indels: 5
0.98 0.02 0.01
Matches are distributed among these distances:
183 605 0.89
184 72 0.11
186 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.33
Consensus pattern (183 bp):
ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
Found at i:7692273 original size:22 final size:23
Alignment explanation
Indices: 7692237--7692279 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
7692227 AACCGGTATA
*
7692237 AAAATGTGTCGATACCTTTTTAT
1 AAAATGTGTCCATACCTTTTTAT
*
7692260 AAAA-GTGTCCATACTTTTTT
1 AAAATGTGTCCATACCTTTTT
7692280 CACTGTGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (23 bp):
AAAATGTGTCCATACCTTTTTAT
Found at i:7695179 original size:23 final size:23
Alignment explanation
Indices: 7695148--7695211 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
7695138 ATAGGTAAAC
*
7695148 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
7695171 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
7695194 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
7695212 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:7695218 original size:23 final size:23
Alignment explanation
Indices: 7695148--7695220 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7695138 ATAGGTAAAC
* **
7695148 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
7695171 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
7695194 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
7695217 ATAT
1 ATAT
7695221 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:7695610 original size:23 final size:23
Alignment explanation
Indices: 7695579--7695642 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
7695569 ATAGGTAAAC
*
7695579 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
7695602 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
7695625 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
7695643 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:7695649 original size:23 final size:23
Alignment explanation
Indices: 7695579--7695651 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7695569 ATAGGTAAAC
* **
7695579 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
7695602 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
7695625 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
7695648 ATAT
1 ATAT
7695652 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:7695852 original size:431 final size:431
Alignment explanation
Indices: 7695049--7697609 Score: 4930
Period size: 431 Copynumber: 5.9 Consensus size: 431
7695039 AATTCGCAGT
7695049 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
7695114 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
7695179 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
* *
7695244 AAAAGTGTCCATACTTTTTTCATTGTGGAAAACATTAATTTAAGGTTATCCTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
* *
7695309 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTCTTACGTTACGATATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
*
7695374 ATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
* *
7695439 AATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAA
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
7695480 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
7695545 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
7695610 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
*
7695675 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCCTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
* *
7695740 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTCTTACGTTACGATATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
*
7695805 ATTAAATTAAAAATTCTAAATATTATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
* *
7695870 AATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAA
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
7695911 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
7695976 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
* *
7696041 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGATTATATTGTAAGGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
7696106 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
7696171 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
*
7696236 ATTAAATTAAAAATTCTAAATAATGTTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
7696301 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
7696342 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
7696407 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
7696472 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
7696537 AAAAGTGTCCATAC-TTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
7696601 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
7696666 ATTAAATTAAAAATTCTAAATAATA-TTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
7696730 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
*
7696771 ACACTGTTAAAAAAATTGAAACATAAATTATATAAGTTTT-AAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
7696835 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
7696900 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
7696965 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
7697030 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
7697095 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
7697160 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
391 AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
7697201 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
1 ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
7697266 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
66 AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
7697331 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
131 TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
7697396 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
196 AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
7697461 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
261 AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
* *
7697526 ATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCA
326 ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
7697591 AATGAAATTATTAAATCAA
391 AATGAAATTATTAAATCAA
7697610 ATAATTTAAA
Statistics
Matches: 2110, Mismatches: 17, Indels: 6
0.99 0.01 0.00
Matches are distributed among these distances:
428 168 0.08
429 259 0.12
430 258 0.12
431 1425 0.68
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.39
Consensus pattern (431 bp):
ACACTGTTAAAAAAATTGAAACATAAATTACATAAGTTTTAAAAAAAGTATCGATCCTTTTTATA
AAAAGTATGGACACTTTCAATATAATAGGTAAACATATGATGTAATAGGTAGCCCTTATATAATG
TAATAGGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT
AAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTT
AAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATT
ATTAAATTAAAAATTCTAAATAATATTTTATAAAATATAAAAACAATCAAATAATTTTTTGTGCA
AATGAAATTATTAAATCAATATTGTAGGTGGAAAACATGAA
Found at i:7696041 original size:23 final size:23
Alignment explanation
Indices: 7696010--7696073 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
7696000 ATAGGTAAAC
*
7696010 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
7696033 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
7696056 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
7696074 TGATTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:7696080 original size:23 final size:23
Alignment explanation
Indices: 7696010--7696082 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7696000 ATAGGTAAAC
* ***
7696010 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGATT
*
7696033 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GATT
7696056 ATATAATGTAATAGGTAGTGATT
1 ATATAATGTAATAGGTAGTGATT
7696079 ATAT
1 ATAT
7696083 TGTAAGGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGATT
Found at i:7696472 original size:23 final size:23
Alignment explanation
Indices: 7696441--7696504 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
7696431 ATAGGTAAAC
*
7696441 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
7696464 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
7696487 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
7696505 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:7696511 original size:23 final size:23
Alignment explanation
Indices: 7696441--7696513 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7696431 ATAGGTAAAC
* **
7696441 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
7696464 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
7696487 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
7696510 ATAT
1 ATAT
7696514 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:7696900 original size:23 final size:23
Alignment explanation
Indices: 7696869--7696932 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
7696859 ATAGGTAAAC
*
7696869 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
7696892 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
7696915 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
7696933 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:7696939 original size:23 final size:23
Alignment explanation
Indices: 7696869--7696941 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7696859 ATAGGTAAAC
* **
7696869 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
7696892 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
7696915 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
7696938 ATAT
1 ATAT
7696942 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:7697331 original size:23 final size:23
Alignment explanation
Indices: 7697300--7697363 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
7697290 ATAGGTAAAC
*
7697300 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
7697323 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
7697346 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
7697364 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:7697370 original size:23 final size:23
Alignment explanation
Indices: 7697300--7697372 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7697290 ATAGGTAAAC
* **
7697300 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
7697323 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
7697346 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
7697369 ATAT
1 ATAT
7697373 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:7697674 original size:25 final size:25
Alignment explanation
Indices: 7697641--7697691 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
7697631 ACAACAAATC
*
7697641 AATTAAACATTGTTGTGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
*
7697666 AATTGAACATTGTTATGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
7697691 A
1 A
7697692 TTTGGATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (25 bp):
AATTAAACATTGTTATGGGTACATT
Found at i:7697961 original size:18 final size:18
Alignment explanation
Indices: 7697940--7697976 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7697930 GTAATTGGAG
7697940 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
7697958 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
7697976 T
1 T
7697977 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:7697984 original size:24 final size:24
Alignment explanation
Indices: 7697932--7697978 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
7697922 TTTCATATGT
* *
7697932 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
7697956 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
7697979 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:7698279 original size:39 final size:39
Alignment explanation
Indices: 7698236--7698361 Score: 225
Period size: 39 Copynumber: 3.2 Consensus size: 39
7698226 TCCGATGCTC
* *
7698236 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
7698275 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
*
7698314 ATCAAAATCCAAATCTCATATGATGCCAAACAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
7698353 ATCAAAATC
1 ATCAAAATC
7698362 TACAACTTGA
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 84 1.00
ACGTcount: A:0.49, C:0.21, G:0.13, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
Found at i:7698796 original size:23 final size:23
Alignment explanation
Indices: 7698765--7698828 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
7698755 ATAGGTAAAC
*
7698765 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
7698788 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
7698811 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
7698829 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:7698835 original size:23 final size:23
Alignment explanation
Indices: 7698765--7698837 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7698755 ATAGGTAAAC
* **
7698765 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
7698788 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
7698811 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
7698834 ATAT
1 ATAT
7698838 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:7700574 original size:74 final size:74
Alignment explanation
Indices: 7700487--7700629 Score: 243
Period size: 74 Copynumber: 1.9 Consensus size: 74
7700477 AAGCTGTATA
* *
7700487 TATTTTACTGTTTACATTATTATTAACGTTTAAACAAA-TCGGTAGTTAGTTTAACGTAATAGGT
1 TATTTTACCGTTTACATTATTATTAACGTTTAAACAAACT-GGTAGTTAATTTAACGTAATAGGT
7700551 AGCGTCATTT
65 AGCGTCATTT
*
7700561 TATTTTACCGTTTACATTATTATTAACTTTTAAACAAACTGGTAGTTAATTTAACGTAATAGGTA
1 TATTTTACCGTTTACATTATTATTAACGTTTAAACAAACTGGTAGTTAATTTAACGTAATAGGTA
7700626 GCGT
66 GCGT
7700630 TTATTTAACG
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
74 64 0.98
75 1 0.02
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (74 bp):
TATTTTACCGTTTACATTATTATTAACGTTTAAACAAACTGGTAGTTAATTTAACGTAATAGGTA
GCGTCATTT
Found at i:7700636 original size:23 final size:23
Alignment explanation
Indices: 7700609--7700674 Score: 87
Period size: 23 Copynumber: 2.9 Consensus size: 23
7700599 CTGGTAGTTA
7700609 ATTTAACGTAATAGGTAGCGTTT
1 ATTTAACGTAATAGGTAGCGTTT
* **
7700632 ATTTAACGTAATATGTATAGTTT
1 ATTTAACGTAATAGGTAGCGTTT
* *
7700655 ATTTAACATAATAGATAGCG
1 ATTTAACGTAATAGGTAGCG
7700675 CCTATTTTAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (23 bp):
ATTTAACGTAATAGGTAGCGTTT
Found at i:7700754 original size:71 final size:73
Alignment explanation
Indices: 7700677--7700866 Score: 240
Period size: 71 Copynumber: 2.6 Consensus size: 73
7700667 AGATAGCGCC
** *
7700677 TATTTTATTTTATCGTTTACATTATTTCTAACCTTTAAACAAACCGGTAACTAGTTAAATGTAAT
1 TATTTTATTTTATCGTTTACATTATTAGTAACCTTTAAACAAACCGGTAACTAGTTAAACGTAAT
7700742 A-GCA-CA
66 AGGCAGCA
* * * * *
7700748 TATTTTATTTTATCGTTGACATTATTAGTAACCTTTAAACAAATCGGTAAGTATTTTAACGTAAT
1 TATTTTATTTTATCGTTTACATTATTAGTAACCTTTAAACAAACCGGTAACTAGTTAAACGTAAT
* *
7700813 AGGTAGTGCC
66 AGGCA--GCA
* *
7700823 TATTTTATTTTACCGTTTACATTATTAGTAACCTTCAAACAAAC
1 TATTTTATTTTATCGTTTACATTATTAGTAACCTTTAAACAAAC
7700867 TGATAGATAT
Statistics
Matches: 101, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
71 58 0.57
72 2 0.02
75 41 0.41
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.42
Consensus pattern (73 bp):
TATTTTATTTTATCGTTTACATTATTAGTAACCTTTAAACAAACCGGTAACTAGTTAAACGTAAT
AGGCAGCA
Found at i:7700878 original size:75 final size:75
Alignment explanation
Indices: 7700748--7700889 Score: 207
Period size: 75 Copynumber: 1.9 Consensus size: 75
7700738 TAATAGCACA
* * *
7700748 TATTTTATTTTATCGTTGACATTATTAGTAACCTTTAAACAAATCGGTAAGTATTTTAACGTAAT
1 TATTTTATTTTACCGTTGACATTATTAGTAACCTTCAAACAAATCGATAAGTATTTTAACGTAAT
7700813 AGGTAGTGCC
66 AGGTAGTGCC
* *
7700823 TATTTTATTTTACCGTTTACATTATTAGTAACCTTCAAACAAA-CTGAT-AGATATTTTAATGTA
1 TATTTTATTTTACCGTTGACATTATTAGTAACCTTCAAACAAATC-GATAAG-TATTTTAACGTA
7700886 ATAG
64 ATAG
7700890 ATAATATTTT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
74 3 0.05
75 57 0.95
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (75 bp):
TATTTTATTTTACCGTTGACATTATTAGTAACCTTCAAACAAATCGATAAGTATTTTAACGTAAT
AGGTAGTGCC
Found at i:7700954 original size:66 final size:66
Alignment explanation
Indices: 7700828--7700954 Score: 182
Period size: 66 Copynumber: 1.9 Consensus size: 66
7700818 GTGCCTATTT
* **
7700828 TATTTTACCGTTTACATTATTAGTAACCTTCAAACAAACTGATAGATATTTTAATGTAATAGATA
1 TATTTTACCGTTTACATTATTAGTAACCTTCAAACAAACTGATAGATAGTTTAACATAATAGATA
7700893 A
66 A
* * * * *
7700894 TATTTTATCTTTTACATTATTAGTAACCTTCAAATAAACTGGTAGGTAGTTTAACATAATA
1 TATTTTACCGTTTACATTATTAGTAACCTTCAAACAAACTGATAGATAGTTTAACATAATA
7700955 TGTATCACTT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
66 53 1.00
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (66 bp):
TATTTTACCGTTTACATTATTAGTAACCTTCAAACAAACTGATAGATAGTTTAACATAATAGATA
A
Found at i:7701443 original size:2 final size:2
Alignment explanation
Indices: 7701436--7701487 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
7701426 TATTGCTACT
7701436 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
7701478 TA TA TG TA TA
1 TA TA TA TA TA
7701488 GATACCTACC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7724069 original size:15 final size:16
Alignment explanation
Indices: 7724031--7724083 Score: 56
Period size: 15 Copynumber: 3.2 Consensus size: 16
7724021 CATGTATTTG
7724031 TAATATGTAA-AAAATA
1 TAATAT-TAATAAAATA
*
7724047 TTATATTAATAAAA-A
1 TAATATTAATAAAATA
7724062 TAATATTAATAATAATTA
1 TAATATTAATAA-AA-TA
7724080 TAAT
1 TAAT
7724084 GACATATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
15 15 0.48
16 11 0.35
18 5 0.16
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (16 bp):
TAATATTAATAAAATA
Found at i:7724399 original size:49 final size:48
Alignment explanation
Indices: 7724340--7724441 Score: 141
Period size: 49 Copynumber: 2.1 Consensus size: 48
7724330 ATGGAATATA
* * * * * *
7724340 AATATCAAATCTTGAAGGAGAGGGATATGTTTCGCTTCTTTCTGAAGGG
1 AATATAAAATCTCGAAGAAGAGAGACATGTTTCGCTT-ATTCTGAAGGG
7724389 AATATAAAATCTCGAAGAAGAGAGACATGTTTCGCTTATTCTGAAGGG
1 AATATAAAATCTCGAAGAAGAGAGACATGTTTCGCTTATTCTGAAGGG
7724437 AATAT
1 AATAT
7724442 CAGATATGGG
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
48 15 0.32
49 32 0.68
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (48 bp):
AATATAAAATCTCGAAGAAGAGAGACATGTTTCGCTTATTCTGAAGGG
Found at i:7724581 original size:113 final size:114
Alignment explanation
Indices: 7724380--7724630 Score: 400
Period size: 113 Copynumber: 2.2 Consensus size: 114
7724370 TTCGCTTCTT
* * * *
7724380 TCTGAAGGGAATATAAAATC-TCGAAGAAGAGAGACATGTTTCGCTTATTCTGAAGGGAATATCA
1 TCTGAAGGGAATATCAAATCTTGGAAGAAGAGAGACATGTTCCGCTTACTCTGAAGGGAATATCA
*
7724444 GATATGGGGAAGTTGATCTATTCAATCGGGGAAGACTTGTTCCACTTAC
66 GATATGAGGAAGTTGATCTATTCAATCGGGGAAGACTTGTTCCACTTAC
7724493 TCTGAAGGGAATATCAAATCTTGGAA-AAGAGAGACATGTTCCGCTTACTCTGAAGGGAATATCA
1 TCTGAAGGGAATATCAAATCTTGGAAGAAGAGAGACATGTTCCGCTTACTCTGAAGGGAATATCA
* * *
7724557 TATCTGAGGAAGTTGAGTCT-TTCAATCGGGGCAGACTTGTTCCACTTAC
66 GATATGAGGAAGTTGA-TCTATTCAATCGGGGAAGACTTGTTCCACTTAC
7724606 TCTGAAGGGAATATCAAATCTTGGA
1 TCTGAAGGGAATATCAAATCTTGGA
7724631 TTTGCTTCAC
Statistics
Matches: 128, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
113 121 0.95
114 7 0.05
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (114 bp):
TCTGAAGGGAATATCAAATCTTGGAAGAAGAGAGACATGTTCCGCTTACTCTGAAGGGAATATCA
GATATGAGGAAGTTGATCTATTCAATCGGGGAAGACTTGTTCCACTTAC
Found at i:7724671 original size:37 final size:37
Alignment explanation
Indices: 7724629--7724738 Score: 166
Period size: 37 Copynumber: 3.0 Consensus size: 37
7724619 TCAAATCTTG
** *
7724629 GATTTGCTTCACTACTCTTTCATGAAGGCTTAAGGTT
1 GATTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATT
7724666 GATTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATT
1 GATTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATT
* * *
7724703 GATTTACTTTATTACTCTTTGGTGAAGGCTTAAGAT
1 GATTTGCTTCACTACTCTTTGGTGAAGGCTTAAGAT
7724739 GGCCCGGATG
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (37 bp):
GATTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATT
Found at i:7732395 original size:15 final size:15
Alignment explanation
Indices: 7732377--7732405 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7732367 TAAAAAAATT
7732377 ATATTAATAATAATA
1 ATATTAATAATAATA
7732392 ATATTAATAATAAT
1 ATATTAATAATAAT
7732406 TATAATGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATATTAATAATAATA
Found at i:7734112 original size:28 final size:27
Alignment explanation
Indices: 7734048--7734114 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 27
7734038 ATAATTTTAC
*
7734048 TTTTTTAAAAATAAATAAACTTTTAAT
1 TTTTTTAAAAATAAATAAACTTTTAAA
**
7734075 TTATTTTAAAAATAAATTATTCTTTTAAA
1 TT-TTTTAAAAATAAA-TAAACTTTTAAA
*
7734104 TTTTATAAAAA
1 TTTTTTAAAAA
7734115 AATAATTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.06
28 21 0.62
29 11 0.32
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (27 bp):
TTTTTTAAAAATAAATAAACTTTTAAA
Found at i:7739673 original size:33 final size:33
Alignment explanation
Indices: 7739633--7739709 Score: 145
Period size: 33 Copynumber: 2.3 Consensus size: 33
7739623 CAACATTCAA
7739633 CAACAAGCAAAGCGGCTTATTAGTTTAGAACTT
1 CAACAAGCAAAGCGGCTTATTAGTTTAGAACTT
7739666 CAACAAGCAAAGCGGCTTATTAGTTTAGAACTT
1 CAACAAGCAAAGCGGCTTATTAGTTTAGAACTT
*
7739699 CAACAACCAAA
1 CAACAAGCAAA
7739710 CCGAGTTTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (33 bp):
CAACAAGCAAAGCGGCTTATTAGTTTAGAACTT
Found at i:7740368 original size:17 final size:17
Alignment explanation
Indices: 7740348--7740382 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
7740338 ATTTTAGCCA
7740348 CAAAACAACTTTAATCC
1 CAAAACAACTTTAATCC
7740365 CAAAACAACTTTAATCC
1 CAAAACAACTTTAATCC
7740382 C
1 C
7740383 CCCAATTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (17 bp):
CAAAACAACTTTAATCC
Found at i:7740703 original size:12 final size:12
Alignment explanation
Indices: 7740669--7740712 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
7740659 ATGTATATTC
7740669 TTTTT-TATTTAT
1 TTTTTCTATTT-T
*
7740681 TTTATTTTATTTT
1 TTT-TTCTATTTT
7740694 TTTTTCTATTTT
1 TTTTTCTATTTT
7740706 TTTTTCT
1 TTTTTCT
7740713 TTTATTACTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 18 0.62
13 6 0.21
14 5 0.17
ACGTcount: A:0.11, C:0.05, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTCTATTTT
Found at i:7740703 original size:22 final size:21
Alignment explanation
Indices: 7740669--7740718 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
7740659 ATGTATATTC
7740669 TTTTTTATTTATTTTATTTTA
1 TTTTTTATTTATTTTATTTTA
*
7740690 TTTTTTTTTCTATTTT-TTTT-
1 TTTTTTATT-TATTTTATTTTA
*
7740710 TCTTTTATT
1 TTTTTTATT
7740719 ACTATTAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 7 0.28
21 12 0.48
22 6 0.24
ACGTcount: A:0.12, C:0.04, G:0.00, T:0.84
Consensus pattern (21 bp):
TTTTTTATTTATTTTATTTTA
Found at i:7740705 original size:17 final size:17
Alignment explanation
Indices: 7740683--7740715 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7740673 TTATTTATTT
7740683 TATTTTATTTTT-TTTTC
1 TATTTT-TTTTTCTTTTC
7740700 TATTTTTTTTTCTTTT
1 TATTTTTTTTTCTTTT
7740716 ATTACTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.85
Consensus pattern (17 bp):
TATTTTTTTTTCTTTTC
Found at i:7740764 original size:12 final size:14
Alignment explanation
Indices: 7740733--7740773 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
7740723 TTAACATATG
*
7740733 TATATATATATATA
1 TATATATATTTATA
7740747 TATATATATTTA-A
1 TATATATATTTATA
*
7740760 T-TATATTTTTATA
1 TATATATATTTATA
7740773 T
1 T
7740774 TTATTTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 9 0.38
13 4 0.17
14 11 0.46
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATATATATTTATA
Found at i:7741153 original size:18 final size:19
Alignment explanation
Indices: 7741116--7741160 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
7741106 TTTTTATTTC
7741116 TTTTTTAGTTTTTCATCATT
1 TTTTTTAGTTTTTCA-CATT
*
7741136 TTTTTTATTTTTTC-CATT
1 TTTTTTAGTTTTTCACATT
7741154 TTATTTT
1 TT-TTTT
7741161 CTTTATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 6 0.26
19 4 0.17
20 13 0.57
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.76
Consensus pattern (19 bp):
TTTTTTAGTTTTTCACATT
Found at i:7741178 original size:14 final size:15
Alignment explanation
Indices: 7741151--7741183 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
7741141 TATTTTTTCC
*
7741151 ATTTTATTTTC-TTT
1 ATTTTATTTACTTTT
7741165 ATTTTATTTACTTTT
1 ATTTTATTTACTTTT
7741180 ATTT
1 ATTT
7741184 CTTTTTTCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (15 bp):
ATTTTATTTACTTTT
Found at i:7745870 original size:17 final size:19
Alignment explanation
Indices: 7745845--7745883 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
7745835 ATATCTATAT
7745845 TATTAATATTT-TGTTCTA
1 TATTAATATTTATGTTCTA
7745863 TATT-ATATTTAATGTTCTA
1 TATTAATATTT-ATGTTCTA
7745882 TA
1 TA
7745884 AGTTGTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 4 0.21
19 9 0.47
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (19 bp):
TATTAATATTTATGTTCTA
Found at i:7753669 original size:15 final size:15
Alignment explanation
Indices: 7753649--7753684 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
7753639 TCGAAGAAAT
* *
7753649 GAAAAAGAAAAAAGG
1 GAAAAACAAAAAAGA
7753664 GAAAAACAAAAAAGA
1 GAAAAACAAAAAAGA
7753679 GAAAAA
1 GAAAAA
7753685 ACGTTTAGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (15 bp):
GAAAAACAAAAAAGA
Found at i:7754460 original size:21 final size:21
Alignment explanation
Indices: 7754434--7754502 Score: 120
Period size: 21 Copynumber: 3.3 Consensus size: 21
7754424 GTTTCCAGAT
* *
7754434 TCGCAACGCGAACTTCGACTA
1 TCGCAACACGAACTTGGACTA
7754455 TCGCAACACGAACTTGGACTA
1 TCGCAACACGAACTTGGACTA
7754476 TCGCAACACGAACTTGGACTA
1 TCGCAACACGAACTTGGACTA
7754497 TCGCAA
1 TCGCAA
7754503 TGCGATTTAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.19
Consensus pattern (21 bp):
TCGCAACACGAACTTGGACTA
Found at i:7754526 original size:20 final size:20
Alignment explanation
Indices: 7754497--7754551 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
7754487 ACTTGGACTA
*
7754497 TCGCAATGCGATTTACATA-T
1 TCGCATTGCGATTTACA-AGT
*
7754517 TCGCATTGCGATAGTACAAGT
1 TCGCATTGCGAT-TTACAAGT
7754538 TCGCATTGCGATTT
1 TCGCATTGCGATTT
7754552 TCCAAATTCG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 13 0.43
21 17 0.57
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (20 bp):
TCGCATTGCGATTTACAAGT
Found at i:7754540 original size:21 final size:19
Alignment explanation
Indices: 7754516--7754671 Score: 84
Period size: 21 Copynumber: 7.6 Consensus size: 19
7754506 GATTTACATA
7754516 TTCGCATTGCGATAGTACAAG
1 TTCGC-TTGCGATAGT-CAAG
** *
7754537 TTCGCATTGCGATTTTCCAAA
1 TTCGC-TTGCGATAGT-CAAG
7754558 TTCG-TTGCGATAGTCGAAG
1 TTCGCTTGCGATAGTC-AAG
* * *
7754577 TTTGCGTTGCGATTTATTCCAAA
1 TTCGC-TTGCGA--TAGT-CAAG
7754600 TTCG-TTGCGATAGTCGAAG
1 TTCGCTTGCGATAGTC-AAG
** *
7754619 TTCGCGTTGCGATTTTCCAAA
1 TTCGC-TTGCGATAGT-CAAG
7754640 TTCG-TTGCGATAGTCGAAG
1 TTCGCTTGCGATAGTC-AAG
7754659 TTCGCGTTGCGAT
1 TTCGC-TTGCGAT
7754672 TTATTCCAAA
Statistics
Matches: 103, Mismatches: 19, Indels: 26
0.70 0.13 0.18
Matches are distributed among these distances:
18 3 0.03
19 36 0.35
21 54 0.52
22 1 0.01
23 8 0.08
24 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.35
Consensus pattern (19 bp):
TTCGCTTGCGATAGTCAAG
Found at i:7754578 original size:40 final size:42
Alignment explanation
Indices: 7754522--7754696 Score: 279
Period size: 40 Copynumber: 4.3 Consensus size: 42
7754512 CATATTCGCA
*
7754522 TTGCGATAGTAC-AAGTTCGCATTGCGA-TT-TTCCAAATTCG
1 TTGCGATAGT-CGAAGTTCGCGTTGCGATTTATTCCAAATTCG
*
7754562 TTGCGATAGTCGAAGTTTGCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
7754604 TTGCGATAGTCGAAGTTCGCGTTGCGA-TT-TTCCAAATTCG
1 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
*
7754644 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTTG
1 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
7754686 TTGCGATAGTC
1 TTGCGATAGTC
7754697 CAAAATTGCA
Statistics
Matches: 126, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
39 1 0.01
40 61 0.48
41 6 0.05
42 58 0.46
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (42 bp):
TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
Found at i:7754620 original size:82 final size:81
Alignment explanation
Indices: 7754522--7754696 Score: 305
Period size: 82 Copynumber: 2.1 Consensus size: 81
7754512 CATATTCGCA
*
7754522 TTGCGATAGTACAAGTTCGCATTGCGATTTTCCAAATTCGTTGCGATAGTCGAAGTTTGCGTTGC
1 TTGCGATAGT-CAAGTTCGCATTGCGATTTTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGC
7754587 GATTTATTCCAAATTCG
65 GATTTATTCCAAATTCG
*
7754604 TTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGC
1 TTGCGATAGTC-AAGTTCGCATTGCGATTTTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGC
*
7754669 GATTTATTCCAAATTTG
65 GATTTATTCCAAATTCG
7754686 TTGCGATAGTC
1 TTGCGATAGTC
7754697 CAAAATTGCA
Statistics
Matches: 89, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
81 1 0.01
82 88 0.99
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (81 bp):
TTGCGATAGTCAAGTTCGCATTGCGATTTTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCG
ATTTATTCCAAATTCG
Found at i:7755470 original size:42 final size:42
Alignment explanation
Indices: 7755408--7755580 Score: 287
Period size: 42 Copynumber: 4.2 Consensus size: 42
7755398 TGCGATTTTG
7755408 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* * *
7755450 GACTATCGCAACGAACTTGGAATAAATCGCAACGCAAACTTG
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
7755492 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
*
7755534 GACTATCGTAACGAATTTGG-A-AAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
*
7755574 GATTATC
1 GACTATC
7755581 ACAATGCGAA
Statistics
Matches: 123, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 25 0.20
41 1 0.01
42 97 0.79
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.22
Consensus pattern (42 bp):
GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
Found at i:7755541 original size:21 final size:21
Alignment explanation
Indices: 7755405--7755611 Score: 151
Period size: 21 Copynumber: 10.0 Consensus size: 21
7755395 CGTTGCGATT
*
7755405 TTGGACTATCGCAA--CGAAT
1 TTGGACTATCGCAACGCGAAC
*
7755424 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAACGCGAAC
*
7755447 TTCGACTATCGCAA--CGAAC
1 TTGGACTATCGCAACGCGAAC
* *
7755466 TTGGAATAAATCGCAACGCAAAC
1 TTGGACT--ATCGCAACGCGAAC
*
7755489 TTGGACTATCGCAA--CGAAT
1 TTGGACTATCGCAACGCGAAC
*
7755508 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAACGCGAAC
* * *
7755531 TTCGACTATCGTAA--CGAAT
1 TTGGACTATCGCAACGCGAAC
**
7755550 TTGGAAAATCGCAACGCGAAC
1 TTGGACTATCGCAACGCGAAC
* * * *
7755571 TTCGATTATCACAATGCGAAC
1 TTGGACTATCGCAACGCGAAC
*
7755592 TTGGACTATCGCAATGCGAA
1 TTGGACTATCGCAACGCGAA
7755612 TATGTAAATC
Statistics
Matches: 145, Mismatches: 29, Indels: 26
0.73 0.14 0.13
Matches are distributed among these distances:
19 39 0.27
21 78 0.54
23 28 0.19
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (21 bp):
TTGGACTATCGCAACGCGAAC
Done.