Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008527.1 Hibiscus syriacus cultivar Beakdansim tig00111402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9057482
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 32 of 37
Found at i:7755611 original size:42 final size:41
Alignment explanation
Indices: 7755408--7755611 Score: 259
Period size: 42 Copynumber: 4.9 Consensus size: 41
7755398 TGCGATTTTG
*
7755408 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAACTTGGAAT-AATCGCAACGCGAACTTC
* *
7755450 GACTATCGCAACGAACTTGGAATAAATCGCAACGCAAACTTG
1 GACTATCGCAACGAACTTGGAAT-AATCGCAACGCGAACTTC
*
7755492 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGAACTTGGAAT-AATCGCAACGCGAACTTC
* *
7755534 GACTATCGTAACGAATTTGGAA-AATCGCAACGCGAACTTC
1 GACTATCGCAACGAACTTGGAATAATCGCAACGCGAACTTC
* * * *
7755574 GATTATCACAATGCGAACTTGGACT-ATCGCAATGCGAA
1 GACTATCGCAA--CGAACTTGGAATAATCGCAACGCGAA
7755612 TATGTAAATC
Statistics
Matches: 146, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
40 26 0.18
42 120 0.82
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.22
Consensus pattern (41 bp):
GACTATCGCAACGAACTTGGAATAATCGCAACGCGAACTTC
Found at i:7756558 original size:106 final size:106
Alignment explanation
Indices: 7756373--7756954 Score: 799
Period size: 106 Copynumber: 5.4 Consensus size: 106
7756363 GACGAATGAG
* * * * * *
7756373 CTTCCCAGTTTCAGAGCCAATTTCAACTTTATAGCGAATGATAATGGACTCAAGATAACACAAGT
1 CTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGC
7756438 TCAACTTCACAACGAAGGGGCGACTGGTTGTCAACAAACAA
66 TCAACTTCACAACGAAGGGGCGACTGGTTGTCAACAAACAA
*
7756479 CTTCCCAGTCTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGC
1 CTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGC
7756544 TCAACTTCACAACGAAGGGGCGACTGGTTGTCAACAAACAA
66 TCAACTTCACAACGAAGGGGCGACTGGTTGTCAACAAACAA
* * *
7756585 ATTCCCAATTTCATAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGC
1 CTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGC
7756650 TCAACTTCACAACGAAGGGGCGACTGGTTGTCAACAAACAA
66 TCAACTTCACAACGAAGGGGCGACTGGTTGTCAACAAACAA
* ** * * * *
7756691 CTTCTCAGTTTCAGAATCAATTTCAACTTCACAACGAATGATATTGGACTCAA-AAAAGAACAAG
1 CTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAA-CACAAG
* ** *
7756755 CTCAACTTCACAGCGAAGGGGCGGTTGATTGTCAACAAACAA
65 CTCAACTTCACAACGAAGGGGCGACTGGTTGTCAACAAACAA
* * * *
7756797 CTTCTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTAGACTCGAGACAACA
1 CTTC-CCAG--T--TTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACA
* ** **
7756862 CAAGCTCAACTTCACATCGAAGGGGCGGTTGACTGTCAACAAA-AA
61 CAAGCTCAACTTCACAACGAAGGGGCGACTGGTTGTCAACAAACAA
* *
7756907 CTTTCCCAGTTCCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
1 C-TTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
7756955 CCTCGGAACA
Statistics
Matches: 429, Mismatches: 39, Indels: 16
0.89 0.08 0.03
Matches are distributed among these distances:
105 3 0.01
106 327 0.76
107 4 0.01
108 1 0.00
109 1 0.00
110 6 0.01
111 84 0.20
112 3 0.01
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (106 bp):
CTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGC
TCAACTTCACAACGAAGGGGCGACTGGTTGTCAACAAACAA
Found at i:7758583 original size:2 final size:2
Alignment explanation
Indices: 7758576--7758605 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7758566 TTAAAGTTAT
7758576 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7758606 ACTATTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7758743 original size:129 final size:133
Alignment explanation
Indices: 7758477--7758728 Score: 458
Period size: 129 Copynumber: 1.9 Consensus size: 133
7758467 ATTATATACA
7758477 TATTTTTATTTATTTCTTTTTGTTAATTCGTATTATTAAATATATATATATTAATTATTTTTATT
1 TATTTTTATTTATTTCTTTTTGTTAATTCGTATTATT-AATATATATATATTAATTATTTTTATT
7758542 TTAATATTTTTTTATTTACCTTGTTTAAAGTTATTATATATATATATATATATATATATATATAA
65 TTAATATTTTTTTATTTACCTTGTTTAAAGTTATTATATATATATATATATATATATATATATAA
7758607 CTAT
130 CTAT
7758611 TATTTTTATTTATTTCTTTTTGTTAATTCGTATTATT-A-A-ATATATATTAATTATTTTTATTT
1 TATTTTTATTTATTTCTTTTTGTTAATTCGTATTATTAATATATATATATTAATTATTTTTATTT
*
7758673 TAATA-TTTTTTATTTACCTTGTTTAAAGTTATTATATATATATATATATATTTATA
66 TAATATTTTTTTATTTACCTTGTTTAAAGTTATTATATATATATATATATATATATA
7758729 ACTATTATTA
Statistics
Matches: 117, Mismatches: 1, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
129 50 0.43
130 28 0.24
131 1 0.01
132 1 0.01
134 37 0.32
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.61
Consensus pattern (133 bp):
TATTTTTATTTATTTCTTTTTGTTAATTCGTATTATTAATATATATATATTAATTATTTTTATTT
TAATATTTTTTTATTTACCTTGTTTAAAGTTATTATATATATATATATATATATATATATATAAC
TAT
Found at i:7758854 original size:19 final size:20
Alignment explanation
Indices: 7758826--7758868 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
7758816 TATTCTTTTT
*
7758826 TATTTATTTTATTTTATTTC
1 TATTTATTTTATTTTATTAC
*
7758846 TATTT-TTTTCTTTTATTAC
1 TATTTATTTTATTTTATTAC
7758865 TATT
1 TATT
7758869 AACATATGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (20 bp):
TATTTATTTTATTTTATTAC
Found at i:7759376 original size:3 final size:3
Alignment explanation
Indices: 7759358--7759389 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
7759348 CATTTATTTA
7759358 TAT TA- TAT TA- TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7759390 TTACTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.15
3 23 0.85
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:7759723 original size:10 final size:9
Alignment explanation
Indices: 7759673--7759725 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
7759663 TTTTTCATCA
7759673 TTTATTTA-
1 TTTATTTAT
7759681 TTTATTTAT
1 TTTATTTAT
**
7759690 TCCATTATAT
1 TTTATT-TAT
*
7759700 TTTCTTTAT
1 TTTATTTAT
7759709 TTTATTTACT
1 TTTATTTA-T
7759719 TTTATTT
1 TTTATTT
7759726 TTTCCTATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
8 8 0.22
9 14 0.39
10 14 0.39
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (9 bp):
TTTATTTAT
Found at i:7760778 original size:31 final size:31
Alignment explanation
Indices: 7760728--7760830 Score: 107
Period size: 31 Copynumber: 3.3 Consensus size: 31
7760718 AGCTTAATTT
* * *
7760728 TTAATTTTATCATTGAATTTTATATAAAATA
1 TTAATTTAATCTTTGAATTTTAGATAAAATA
* * * *
7760759 CTAATTTAATCTTTTAATTTTAGATATACTA
1 TTAATTTAATCTTTGAATTTTAGATAAAATA
* * * *
7760790 TTAATTTGACCTTTGAACTTTAGATAAATTA
1 TTAATTTAATCTTTGAATTTTAGATAAAATA
7760821 TTAATTTAAT
1 TTAATTTAAT
7760831 TCATGAATAT
Statistics
Matches: 56, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
31 56 1.00
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.50
Consensus pattern (31 bp):
TTAATTTAATCTTTGAATTTTAGATAAAATA
Found at i:7768268 original size:2 final size:2
Alignment explanation
Indices: 7768261--7768327 Score: 134
Period size: 2 Copynumber: 33.5 Consensus size: 2
7768251 CAATAAAAAT
7768261 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7768303 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7768328 GGGTCGAGTG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 65 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7768865 original size:20 final size:20
Alignment explanation
Indices: 7768840--7768972 Score: 230
Period size: 20 Copynumber: 6.7 Consensus size: 20
7768830 TAATACAAAA
7768840 TCGCAACGCGATACTGAATT
1 TCGCAACGCGATACTGAATT
7768860 TCGCAACGCGATACTGAATT
1 TCGCAACGCGATACTGAATT
7768880 TCGCAACGCGATACTGAATT
1 TCGCAACGCGATACTGAATT
7768900 TCGCAACGCGATACTGAATT
1 TCGCAACGCGATACTGAATT
*
7768920 TCGCAACGCGATACTTAATT
1 TCGCAACGCGATACTGAATT
* *
7768940 TCGCAACGCAATACTGACTT
1 TCGCAACGCGATACTGAATT
*
7768960 TCGCAACGAGATA
1 TCGCAACGCGATA
7768973 ATACATAATC
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 107 1.00
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.25
Consensus pattern (20 bp):
TCGCAACGCGATACTGAATT
Found at i:7769188 original size:22 final size:22
Alignment explanation
Indices: 7769160--7769203 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7769150 ACTCTCTCAC
7769160 CCATCTCCGACGAAATCCGTCT
1 CCATCTCCGACGAAATCCGTCT
*
7769182 CCATCTCCGGCGAAATCCGTCT
1 CCATCTCCGACGAAATCCGTCT
7769204 ATCTCCATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.41, G:0.16, T:0.23
Consensus pattern (22 bp):
CCATCTCCGACGAAATCCGTCT
Found at i:7769715 original size:25 final size:24
Alignment explanation
Indices: 7769661--7769715 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
7769651 TGTTTATTAT
* *
7769661 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
7769685 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
7769711 TGTTT
1 TGTTT
7769716 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:7770865 original size:18 final size:18
Alignment explanation
Indices: 7770844--7770891 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
7770834 TCTACTTCGG
7770844 GAGCCATCACCTCACCCA
1 GAGCCATCACCTCACCCA
*
7770862 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
7770880 GAGCCATCACCT
1 GAGCCATCACCT
7770892 GATCGACCCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.27, C:0.46, G:0.12, T:0.15
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:7771480 original size:19 final size:20
Alignment explanation
Indices: 7771426--7771492 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
7771416 TAGTTTACTT
* *
7771426 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
7771446 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
7771466 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
7771485 TCGCAACG
1 TCGCAACG
7771493 AAAAAATCGC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:7771519 original size:19 final size:19
Alignment explanation
Indices: 7771465--7771547 Score: 122
Period size: 19 Copynumber: 4.6 Consensus size: 19
7771455 GGAAATGGCT
7771465 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
7771484 ATCGCAA--CG-AA--AAA
1 ATCGCAATGCGAAATGAAA
7771498 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
7771517 ATCGCAACGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
7771536 ATCGCAATGCGA
1 ATCGCAATGCGA
7771548 TTTGTGTTTC
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
14 10 0.18
16 4 0.07
17 4 0.07
19 39 0.68
ACGTcount: A:0.47, C:0.19, G:0.20, T:0.13
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:7771616 original size:19 final size:19
Alignment explanation
Indices: 7771556--7771619 Score: 57
Period size: 19 Copynumber: 3.6 Consensus size: 19
7771546 GATTTGTGTT
* *
7771556 TCGCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTCATC
* *
7771575 TTGCATTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATC
7771591 TCG--TTGCGATTTTCATC
1 TCGCATTGCGATTTTCATC
7771608 TCGCATTGCGAT
1 TCGCATTGCGAT
7771620 AGCCATTTCT
Statistics
Matches: 35, Mismatches: 5, Indels: 10
0.70 0.10 0.20
Matches are distributed among these distances:
14 6 0.17
15 3 0.09
16 3 0.09
17 4 0.11
18 3 0.09
19 16 0.46
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.45
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATC
Found at i:7771638 original size:20 final size:20
Alignment explanation
Indices: 7771613--7771655 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
7771603 TCATCTCGCA
*
7771613 TTGCGATAGCCATTTCTGCG
1 TTGCGATAGCCATTTCCGCG
*
7771633 TTGCGATAGTCATTTCCGCG
1 TTGCGATAGCCATTTCCGCG
7771653 TTG
1 TTG
7771656 ATTTAGTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.14, C:0.23, G:0.26, T:0.37
Consensus pattern (20 bp):
TTGCGATAGCCATTTCCGCG
Found at i:7772078 original size:21 final size:20
Alignment explanation
Indices: 7772052--7772120 Score: 66
Period size: 21 Copynumber: 3.4 Consensus size: 20
7772042 CTGTCATCCC
7772052 TCAAGAGTCCCCTCCAATCGT
1 TCAAGAGTCCCCTCC-ATCGT
* * **
7772073 TCAAGAGGCCCCTATCATCCC
1 TCAAGAGTCCCCT-CCATCGT
* *
7772094 TCAAGAGTCCCCCCCACCGT
1 TCAAGAGTCCCCTCCATCGT
7772114 TCAAGAG
1 TCAAGAG
7772121 GCCACTGTCA
Statistics
Matches: 37, Mismatches: 10, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
20 10 0.27
21 26 0.70
22 1 0.03
ACGTcount: A:0.25, C:0.41, G:0.16, T:0.19
Consensus pattern (20 bp):
TCAAGAGTCCCCTCCATCGT
Found at i:7772132 original size:41 final size:42
Alignment explanation
Indices: 7772042--7772132 Score: 139
Period size: 41 Copynumber: 2.2 Consensus size: 42
7772032 CCCGACTCAC
* *
7772042 CTGTCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCC
1 CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
* *
7772084 CTATCATCCCTCAAGAGTCCCC-CCCACCGTTCAAGAGGCCA
1 CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
7772125 CTGTCATC
1 CTGTCATC
7772133 GTTGAAGAGG
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
41 23 0.52
42 21 0.48
ACGTcount: A:0.22, C:0.42, G:0.15, T:0.21
Consensus pattern (42 bp):
CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
Found at i:7773575 original size:14 final size:14
Alignment explanation
Indices: 7773541--7773579 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
7773531 TTGATTGTTT
7773541 AATTGATTTGTAAA
1 AATTGATTTGTAAA
*
7773555 AAATGATTTGTAAA
1 AATTGATTTGTAAA
**
7773569 TGTTGATTTGT
1 AATTGATTTGT
7773580 TTAATTGATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:7774848 original size:3 final size:3
Alignment explanation
Indices: 7774840--7774884 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
7774830 CGGGGATTTT
* * *
7774840 TTC TTC TTC TTT TTC TTC TTC TTT TTC TTC TTC TTT TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
7774885 AAGATTATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (3 bp):
TTC
Found at i:7774854 original size:12 final size:12
Alignment explanation
Indices: 7774837--7774884 Score: 96
Period size: 12 Copynumber: 4.0 Consensus size: 12
7774827 CTTCGGGGAT
7774837 TTTTTCTTCTTC
1 TTTTTCTTCTTC
7774849 TTTTTCTTCTTC
1 TTTTTCTTCTTC
7774861 TTTTTCTTCTTC
1 TTTTTCTTCTTC
7774873 TTTTTCTTCTTC
1 TTTTTCTTCTTC
7774885 AAGATTATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTTTCTTCTTC
Found at i:7775885 original size:20 final size:20
Alignment explanation
Indices: 7775860--7775926 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
7775850 GTATTATCTG
*
7775860 GTTGCGATAGTCAGAATCGC
1 GTTGCGAAAGTCAGAATCGC
7775880 GTTGCGAAAGTCAGAATCGC
1 GTTGCGAAAGTCAGAATCGC
*
7775900 GTTGCGAAAGTTAGAATCGC
1 GTTGCGAAAGTCAGAATCGC
7775920 GTTGCGA
1 GTTGCGA
7775927 TTTTCCCAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (20 bp):
GTTGCGAAAGTCAGAATCGC
Found at i:7775962 original size:20 final size:21
Alignment explanation
Indices: 7775937--7775988 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
7775927 TTTTCCCAAT
*
7775937 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
*
7775957 TCGCAATGCGAATTTAGAAAA
1 TCGCAATGCGAATTAAGAAAA
7775978 TCGCAATGCGA
1 TCGCAATGCGA
7775989 TACTGACTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 12 0.41
21 17 0.59
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:7776054 original size:20 final size:20
Alignment explanation
Indices: 7775978--7776045 Score: 118
Period size: 20 Copynumber: 3.4 Consensus size: 20
7775968 ATTTAGAAAA
* *
7775978 TCGCAATGCGATACTGACTA
1 TCGCAACGCGATACTGACTT
7775998 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
7776018 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
7776038 TCGCAACG
1 TCGCAACG
7776046 AGATTCTGAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (20 bp):
TCGCAACGCGATACTGACTT
Found at i:7776062 original size:40 final size:40
Alignment explanation
Indices: 7775973--7776063 Score: 119
Period size: 40 Copynumber: 2.3 Consensus size: 40
7775963 TGCGAATTTA
* *
7775973 GAAAATCGCAATGCGATACTGACTATCGCAACGCGATACT
1 GAAAATCGCAACGCGATACTGACTATCGCAACGAGATACT
*** * *
7776013 GACTTTCGCAACGCGATACTGACTTTCGCAACGAGATTCT
1 GAAAATCGCAACGCGATACTGACTATCGCAACGAGATACT
7776053 GAAAATCGCAA
1 GAAAATCGCAA
7776064 TCATCTTCAA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (40 bp):
GAAAATCGCAACGCGATACTGACTATCGCAACGAGATACT
Found at i:7776302 original size:20 final size:20
Alignment explanation
Indices: 7776277--7776352 Score: 116
Period size: 20 Copynumber: 3.8 Consensus size: 20
7776267 CAACGGGGAA
*
7776277 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGGCT
*
7776297 ATCGCAACACGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
7776317 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
* *
7776337 ACCGCAACGAGAAAAT
1 ATCGCAACGCGAAAAT
7776353 CGCAATGCGA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.41, C:0.25, G:0.21, T:0.13
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGGCT
Found at i:7776414 original size:19 final size:19
Alignment explanation
Indices: 7776390--7776434 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
7776380 GATTGTATCG
7776390 TTGCGATAGCCATTTCGCA
1 TTGCGATAGCCATTTCGCA
*** *
7776409 TTGCGATTTTCATTTCGCG
1 TTGCGATAGCCATTTCGCA
7776428 TTGCGAT
1 TTGCGAT
7776435 TCTCTCGTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (19 bp):
TTGCGATAGCCATTTCGCA
Found at i:7778070 original size:44 final size:43
Alignment explanation
Indices: 7777999--7778116 Score: 130
Period size: 44 Copynumber: 2.7 Consensus size: 43
7777989 GGGCTCTGGA
* ** *
7777999 ATGGTGGGAGGGACCTCTTCAACGATGACAGTGGCCTCTTGAACG
1 ATGG-GGGAGGGA-CTCTTGAGGGATGACAGGGGCCTCTTGAACG
* *
7778044 GTGGGGGGAGGGACTCTTGAGGGATGATAGGGGCCTCTTGAACG
1 AT-GGGGGAGGGACTCTTGAGGGATGACAGGGGCCTCTTGAACG
* *
7778088 ATTGGAG-GGGACTCTTGAGGGATGACAGG
1 ATGGGGGAGGGACTCTTGAGGGATGACAGG
7778117 TGAGTAGGGC
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
42 21 0.34
43 3 0.05
44 27 0.44
45 9 0.15
46 2 0.03
ACGTcount: A:0.21, C:0.16, G:0.42, T:0.21
Consensus pattern (43 bp):
ATGGGGGAGGGACTCTTGAGGGATGACAGGGGCCTCTTGAACG
Found at i:7778083 original size:21 final size:21
Alignment explanation
Indices: 7778053--7778112 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
7778043 GGTGGGGGGA
*
7778053 GGGACTCTTGAGGGATGATAG
1 GGGACTCTTGAGGGATGAGAG
* **
7778074 GGGCCTCTTGAACGATTG-GAG
1 GGGACTCTTGAGGGA-TGAGAG
7778095 GGGACTCTTGAGGGATGA
1 GGGACTCTTGAGGGATGA
7778113 CAGGTGAGTA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
20 2 0.07
21 26 0.87
22 2 0.07
ACGTcount: A:0.22, C:0.13, G:0.42, T:0.23
Consensus pattern (21 bp):
GGGACTCTTGAGGGATGAGAG
Found at i:7778503 original size:20 final size:20
Alignment explanation
Indices: 7778480--7778552 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
7778470 AAACTTACTT
* *
7778480 TCGCAAAGCGAAAATGACTA
1 TCGCAACGCGAAAATGGCTA
*
7778500 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGAAAATGGCTA
7778520 TCGCAACGCGAAAATGGCTA
1 TCGCAACGCGAAAATGGCTA
*
7778540 TCGCAATGCGAAA
1 TCGCAACGCGAAA
7778553 TGAAAATCGC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGAAAATGGCTA
Found at i:7778504 original size:40 final size:40
Alignment explanation
Indices: 7778460--7778545 Score: 102
Period size: 40 Copynumber: 2.1 Consensus size: 40
7778450 TAGTTTACTT
* *
7778460 TCGCAACAC-GAAACTTACTTTCGCAAAGCGAAAATGACTA
1 TCGCAACACGGAAA-TGACTATCGCAAAGCGAAAATGACTA
* * * *
7778500 TCGCAACGCGGAAATGGCTATCGCAACGCGAAAATGGCTA
1 TCGCAACACGGAAATGACTATCGCAAAGCGAAAATGACTA
7778540 TCGCAA
1 TCGCAA
7778546 TGCGAAATGA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 35 0.90
41 4 0.10
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.17
Consensus pattern (40 bp):
TCGCAACACGGAAATGACTATCGCAAAGCGAAAATGACTA
Found at i:7778561 original size:19 final size:19
Alignment explanation
Indices: 7778539--7778597 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
7778529 GAAAATGGCT
7778539 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
7778558 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
7778572 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
7778591 ATCGCAA
1 ATCGCAA
7778598 CGACAAAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 10 0.30
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 17 0.52
ACGTcount: A:0.47, C:0.20, G:0.19, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:7778574 original size:14 final size:14
Alignment explanation
Indices: 7778555--7778613 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
7778545 ATGCGAAATG
7778555 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
7778569 AAAATCGCAATGCGAAATG
1 AAAATCGCAA--CG--A-C
7778588 AAAATCGCAACGAC
1 AAAATCGCAACGAC
7778602 AAAATCGCAACG
1 AAAATCGCAACG
7778614 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 22 0.58
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 10 0.26
ACGTcount: A:0.49, C:0.24, G:0.17, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:7778629 original size:33 final size:33
Alignment explanation
Indices: 7778539--7778618 Score: 151
Period size: 33 Copynumber: 2.4 Consensus size: 33
7778529 GAAAATGGCT
7778539 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
7778572 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
7778605 ATCGCAACGCGAAA
1 ATCGCAATGCGAAA
7778619 CACAAATCGC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:7778647 original size:19 final size:19
Alignment explanation
Indices: 7778625--7778688 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
7778615 GAAACACAAA
7778625 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
7778644 TCGCATTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
*
7778660 TCG--TTGTGATTTTCATT
1 TCGCATTGCGATTTTCATT
7778677 TCGCATTGCGAT
1 TCGCATTGCGAT
7778689 AGCCATTTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
14 5 0.14
15 3 0.08
16 4 0.11
17 4 0.11
18 3 0.08
19 17 0.47
ACGTcount: A:0.14, C:0.19, G:0.20, T:0.47
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:7778707 original size:20 final size:19
Alignment explanation
Indices: 7778673--7778727 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
7778663 TTGTGATTTT
*
7778673 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
7778692 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
7778712 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
7778728 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:7779297 original size:18 final size:18
Alignment explanation
Indices: 7779276--7779315 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
7779266 TCAGGTAATG
*
7779276 GCTCTGGGTGAGGTGATA
1 GCTCTGGGTAAGGTGATA
*
7779294 GCTCTGGGTAAGGTGATG
1 GCTCTGGGTAAGGTGATA
7779312 GCTC
1 GCTC
7779316 CTGAAGTGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.42, T:0.28
Consensus pattern (18 bp):
GCTCTGGGTAAGGTGATA
Found at i:7780683 original size:20 final size:20
Alignment explanation
Indices: 7780635--7780693 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
7780625 AATAGTTTCT
* *
7780635 GAAAATGAAAATCGCAACAC
1 GAAAATGACAATCGCAACGC
7780655 GAAAATGACAATCGCAACGC
1 GAAAATGACAATCGCAACGC
** *
7780675 GAATTTGACTATCGCAACG
1 GAAAATGACAATCGCAACG
7780694 AGAGAATAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.44, C:0.22, G:0.19, T:0.15
Consensus pattern (20 bp):
GAAAATGACAATCGCAACGC
Found at i:7780984 original size:22 final size:22
Alignment explanation
Indices: 7780957--7781000 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7780947 GATGGAGATA
7780957 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
7780979 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
7781001 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:7781306 original size:41 final size:40
Alignment explanation
Indices: 7781205--7781324 Score: 150
Period size: 41 Copynumber: 3.0 Consensus size: 40
7781195 TGCAAAAGTC
* * * **
7781205 AGTATTGCATTGCGAAAGTCAGTATTGCGTTGCGAAATTA
1 AGTATCGCGTTGCGAAAGTCAGTATCGCGTTGCGATTTTA
*
7781245 AGTATCGCGTTGCGAAAGTCAGTATCGCGTTGCGATTTTGT
1 AGTATCGCGTTGCGAAAGTCAGTATCGCGTTGCGATTTT-A
* * *
7781286 ATTATCGCGTTGCGATAGTCAGTATCACGTTGCGATTTT
1 AGTATCGCGTTGCGAAAGTCAGTATCGCGTTGCGATTTT
7781325 CCAAATTCGC
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 34 0.49
41 36 0.51
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (40 bp):
AGTATCGCGTTGCGAAAGTCAGTATCGCGTTGCGATTTTA
Found at i:7781321 original size:20 final size:20
Alignment explanation
Indices: 7781187--7781320 Score: 135
Period size: 20 Copynumber: 6.7 Consensus size: 20
7781177 GATTATGTAT
* *
7781187 TATCTCGTTGCAAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
* *
7781207 TATTGCATTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
* * *
7781227 TATTGCGTTGCGAAATTAAG
1 TATCGCGTTGCGAAAGTCAG
7781247 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
** *
7781267 TATCGCGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--AAGTCAG
*
7781288 TATCGCGTTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
7781308 TATCACGTTGCGA
1 TATCGCGTTGCGA
7781321 TTTTCCAAAT
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
19 3 0.03
20 76 0.80
21 14 0.15
22 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:7781340 original size:41 final size:41
Alignment explanation
Indices: 7781214--7781342 Score: 127
Period size: 41 Copynumber: 3.2 Consensus size: 41
7781204 CAGTATTGCA
* ** ** *
7781214 TTGCGAAAGTCAGTATTGCGTTGCGAAATT-AAGTATCGCG
1 TTGCGATAGTCAGTATCACGTTGCGATTTTCAAATATCGCG
* * ** *
7781254 TTGCGAAAGTCAGTATCGCGTTGCGATTTTGTATTATCGCG
1 TTGCGATAGTCAGTATCACGTTGCGATTTTCAAATATCGCG
*
7781295 TTGCGATAGTCAGTATCACGTTGCGATTTTCCAAAT-TCGCA
1 TTGCGATAGTCAGTATCACGTTGCGATTTT-CAAATATCGCG
7781336 TTGCGAT
1 TTGCGAT
7781343 TTACTTATTC
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
40 27 0.36
41 47 0.62
42 2 0.03
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (41 bp):
TTGCGATAGTCAGTATCACGTTGCGATTTTCAAATATCGCG
Found at i:7781341 original size:21 final size:20
Alignment explanation
Indices: 7781315--7781361 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
7781305 CAGTATCACG
*
7781315 TTGCGATTTTCCAAATTCGCA
1 TTGCGA-TTTACAAATTCGCA
**
7781336 TTGCGATTTACTTATTCGCA
1 TTGCGATTTACAAATTCGCA
7781356 TTGCGA
1 TTGCGA
7781362 ATTGGGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.40
Consensus pattern (20 bp):
TTGCGATTTACAAATTCGCA
Found at i:7781403 original size:21 final size:22
Alignment explanation
Indices: 7781351--7781403 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
7781341 ATTTACTTAT
7781351 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
7781372 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
7781393 TCGCATTGCGA
1 TCGCATTGCGA
7781404 TAGTCATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:7782353 original size:2 final size:2
Alignment explanation
Indices: 7782346--7782413 Score: 136
Period size: 2 Copynumber: 34.0 Consensus size: 2
7782336 TCATGTCTCT
7782346 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7782388 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7782414 ATTTTGTATG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 66 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7783541 original size:24 final size:24
Alignment explanation
Indices: 7783506--7783560 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 24
7783496 TAGTGAACTG
*
7783506 CCGGAACCGCTG-AATCAGAAAAAA
1 CCGG-ACCGCTGAAACCAGAAAAAA
7783530 CCGGACCGGCTGAAAACCAGAAAAAA
1 CCGGACC-GCTG-AAACCAGAAAAAA
7783556 CCGGA
1 CCGGA
7783561 AAAAACAGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 3 0.11
24 8 0.30
26 16 0.59
ACGTcount: A:0.44, C:0.27, G:0.24, T:0.05
Consensus pattern (24 bp):
CCGGACCGCTGAAACCAGAAAAAA
Found at i:7790136 original size:24 final size:24
Alignment explanation
Indices: 7790104--7790154 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
7790094 TGAACTGAAC
*
7790104 GTTCAGCGAATCGTGCAGCGGAAA
1 GTTCAGCGAATCGTGCAGCAGAAA
7790128 GTTCAGCGAATCGTGCAGCAGAAA
1 GTTCAGCGAATCGTGCAGCAGAAA
7790152 GTT
1 GTT
7790155 TGTTTATGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.29, C:0.20, G:0.31, T:0.20
Consensus pattern (24 bp):
GTTCAGCGAATCGTGCAGCAGAAA
Found at i:7790304 original size:14 final size:14
Alignment explanation
Indices: 7790285--7790370 Score: 82
Period size: 14 Copynumber: 6.7 Consensus size: 14
7790275 TATATATTCG
7790285 TTTATGTTCGTTCA
1 TTTATGTTCGTTCA
7790299 TTTA---T-GTTCA
1 TTTATGTTCGTTCA
*
7790309 TTTATG-TCTTTTCA
1 TTTATGTTC-GTTCA
7790323 TTTATGTTCGTTCA
1 TTTATGTTCGTTCA
7790337 TTTA--TT--TTCA
1 TTTATGTTCGTTCA
*
7790347 GTTATGTTCGTTCA
1 TTTATGTTCGTTCA
7790361 TTTATGTTCG
1 TTTATGTTCG
7790371 AACACAGGGC
Statistics
Matches: 59, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
10 16 0.27
11 1 0.02
12 5 0.08
14 35 0.59
15 2 0.03
ACGTcount: A:0.15, C:0.13, G:0.13, T:0.59
Consensus pattern (14 bp):
TTTATGTTCGTTCA
Found at i:7790322 original size:24 final size:24
Alignment explanation
Indices: 7790295--7790361 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
7790285 TTTATGTTCG
* *
7790295 TTCATTTATGTTCATTTATGTCTT
1 TTCATTTATGTTCATTCATGTATT
* *
7790319 TTCATTTATGTTCGTTCATTTATT
1 TTCATTTATGTTCATTCATGTATT
* *
7790343 TTCAGTTATGTTCGTTCAT
1 TTCATTTATGTTCATTCAT
7790362 TTATGTTCGA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.16, C:0.13, G:0.10, T:0.60
Consensus pattern (24 bp):
TTCATTTATGTTCATTCATGTATT
Found at i:7790327 original size:38 final size:38
Alignment explanation
Indices: 7790285--7790370 Score: 129
Period size: 38 Copynumber: 2.3 Consensus size: 38
7790275 TATATATTCG
* *
7790285 TTTATGTTCGTTCATTTATGTTCATTTATG-TCTTTTCA
1 TTTATGTTCGTTCATTTATGTTCAGTTATGTTC-GTTCA
*
7790323 TTTATGTTCGTTCATTTATTTTCAGTTATGTTCGTTCA
1 TTTATGTTCGTTCATTTATGTTCAGTTATGTTCGTTCA
7790361 TTTATGTTCG
1 TTTATGTTCG
7790371 AACACAGGGC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
38 42 0.95
39 2 0.05
ACGTcount: A:0.15, C:0.13, G:0.13, T:0.59
Consensus pattern (38 bp):
TTTATGTTCGTTCATTTATGTTCAGTTATGTTCGTTCA
Found at i:7790362 original size:24 final size:24
Alignment explanation
Indices: 7790317--7790365 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
7790307 CATTTATGTC
*
7790317 TTTTCATTTATGTTCGTTCATTTA
1 TTTTCAGTTATGTTCGTTCATTTA
7790341 TTTTCAGTTATGTTCGTTCATTTA
1 TTTTCAGTTATGTTCGTTCATTTA
7790365 T
1 T
7790366 GTTCGAACAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.16, C:0.12, G:0.10, T:0.61
Consensus pattern (24 bp):
TTTTCAGTTATGTTCGTTCATTTA
Found at i:7790648 original size:10 final size:10
Alignment explanation
Indices: 7790633--7790727 Score: 91
Period size: 10 Copynumber: 9.1 Consensus size: 10
7790623 GTGTTTTTGT
7790633 TGTTCGTTTA
1 TGTTCGTTTA
*
7790643 TGTTCGTTCGTT
1 TGTTCGTT--TA
7790655 TGTATTCGTTTA
1 TG--TTCGTTTA
*
7790667 CGTTCGTTTA
1 TGTTCGTTTA
*
7790677 TGTTCGTTTG
1 TGTTCGTTTA
**
7790687 CATTCGTTTA
1 TGTTCGTTTA
*
7790697 TGTTCGTTTG
1 TGTTCGTTTA
*
7790707 CGTTCGTTTA
1 TGTTCGTTTA
7790717 TGTTCGTTTA
1 TGTTCGTTTA
7790727 T
1 T
7790728 CATTTAAATG
Statistics
Matches: 67, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
10 56 0.84
12 5 0.07
14 6 0.09
ACGTcount: A:0.08, C:0.14, G:0.21, T:0.57
Consensus pattern (10 bp):
TGTTCGTTTA
Found at i:7790651 original size:14 final size:14
Alignment explanation
Indices: 7790625--7790684 Score: 50
Period size: 14 Copynumber: 3.9 Consensus size: 14
7790615 TTGTTTTTGT
*
7790625 GTTTTTGTT-GTTC
1 GTTTATGTTCGTTC
7790638 GTTTATGTTCGTTC
1 GTTTATGTTCGTTC
7790652 GTTTGTATTCGTTTACGTTC
1 G-TT-TA-T-G-TT-CGTTC
7790672 GTTTATGTTCGTT
1 GTTTATGTTCGTT
7790685 TGCATTCGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 13
0.74 0.02 0.25
Matches are distributed among these distances:
13 8 0.21
14 9 0.23
15 4 0.10
16 3 0.08
17 2 0.05
18 3 0.08
19 4 0.10
20 6 0.15
ACGTcount: A:0.07, C:0.12, G:0.22, T:0.60
Consensus pattern (14 bp):
GTTTATGTTCGTTC
Found at i:7790672 original size:20 final size:20
Alignment explanation
Indices: 7790647--7790726 Score: 115
Period size: 20 Copynumber: 4.0 Consensus size: 20
7790637 CGTTTATGTT
* *
7790647 CGTTCGTTTGTATTCGTTTA
1 CGTTCGTTTATGTTCGTTTA
*
7790667 CGTTCGTTTATGTTCGTTTG
1 CGTTCGTTTATGTTCGTTTA
* *
7790687 CATTCGTTTATGTTCGTTTG
1 CGTTCGTTTATGTTCGTTTA
7790707 CGTTCGTTTATGTTCGTTTA
1 CGTTCGTTTATGTTCGTTTA
7790727 TCATTTAAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.09, C:0.15, G:0.21, T:0.55
Consensus pattern (20 bp):
CGTTCGTTTATGTTCGTTTA
Found at i:7790727 original size:30 final size:30
Alignment explanation
Indices: 7790647--7790727 Score: 108
Period size: 30 Copynumber: 2.7 Consensus size: 30
7790637 CGTTTATGTT
*
7790647 CGTTCGTTTGTATTCGTTTACGTTCGTTTA
1 CGTTCGTTTGTATTCGTTTATGTTCGTTTA
* * *
7790677 TGTTCGTTTGCATTCGTTTATGTTCGTTTG
1 CGTTCGTTTGTATTCGTTTATGTTCGTTTA
* *
7790707 CGTTCGTTTATGTTCGTTTAT
1 CGTTCGTTTGTATTCGTTTAT
7790728 CATTTAAATG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.09, C:0.15, G:0.21, T:0.56
Consensus pattern (30 bp):
CGTTCGTTTGTATTCGTTTATGTTCGTTTA
Found at i:7791081 original size:27 final size:27
Alignment explanation
Indices: 7791050--7791116 Score: 125
Period size: 27 Copynumber: 2.5 Consensus size: 27
7791040 AAAATGTAAT
*
7791050 AAGTAAAATTATACTATTCAAAAAAAG
1 AAGTAAAATTATACTATTAAAAAAAAG
7791077 AAGTAAAATTATACTATTAAAAAAAAG
1 AAGTAAAATTATACTATTAAAAAAAAG
7791104 AAGTAAAATTATA
1 AAGTAAAATTATA
7791117 AAAGCGTTCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.27
Consensus pattern (27 bp):
AAGTAAAATTATACTATTAAAAAAAAG
Found at i:7805266 original size:4 final size:4
Alignment explanation
Indices: 7805257--7805288 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
7805247 AACAAAAATA
7805257 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7805289 CCTTAGATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:7808660 original size:21 final size:20
Alignment explanation
Indices: 7808622--7808664 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
7808612 GTTTTATTTG
*
7808622 TTTCCTCTATTACATTAGATC
1 TTTCCTCTATAACATTAG-TC
* *
7808643 TTTCCTTTATAACTTTAGTC
1 TTTCCTCTATAACATTAGTC
7808663 TT
1 TT
7808665 GCTAGTCAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.53
Consensus pattern (20 bp):
TTTCCTCTATAACATTAGTC
Found at i:7814536 original size:19 final size:20
Alignment explanation
Indices: 7814500--7814544 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
7814490 ATGGGGAAAA
*
7814500 AAAT-TTAAAATAATTTTTT
1 AAATATTAAAATAATTTTTC
*
7814519 AAATATTAAAATTA-TTTTC
1 AAATATTAAAATAATTTTTC
7814538 AAATATT
1 AAATATT
7814545 TTTCTTAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
AAATATTAAAATAATTTTTC
Found at i:7814556 original size:13 final size:13
Alignment explanation
Indices: 7814538--7814578 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
7814528 AATTATTTTC
7814538 AAATATTTTTCTT
1 AAATATTTTTCTT
*
7814551 AAATATTTTTTTT
1 AAATATTTTTCTT
*
7814564 ATAT-TTTTTCTT
1 AAATATTTTTCTT
7814576 AAA
1 AAA
7814579 AGTTTATAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
12 9 0.38
13 15 0.62
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (13 bp):
AAATATTTTTCTT
Found at i:7814561 original size:25 final size:25
Alignment explanation
Indices: 7814524--7814579 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
7814514 TTTTTAAATA
7814524 TTAAAATTATTTTCAAATA-TTTTTC
1 TTAAAATTATTTT-AAATATTTTTTC
**
7814549 TTAAATATT-TTTTTTATATTTTTTC
1 TTAAA-ATTATTTTAAATATTTTTTC
7814574 TTAAAA
1 TTAAAA
7814580 GTTTATAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 20 0.74
26 3 0.11
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (25 bp):
TTAAAATTATTTTAAATATTTTTTC
Found at i:7821562 original size:28 final size:30
Alignment explanation
Indices: 7821530--7821599 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
7821520 TGTCTTTATG
* * *
7821530 AAATTTTAAATT-TTTTA-TTTAAATAAAA
1 AAATTTAAAATTATATTATTTTAAAGAAAA
7821558 AAATTTAAAATTATATTATTTTAAAGAAAA
1 AAATTTAAAATTATATTATTTTAAAGAAAA
* *
7821588 AAACTCAAAATT
1 AAATTTAAAATT
7821600 TTATAAAACT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 11 0.31
29 4 0.11
30 20 0.57
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.41
Consensus pattern (30 bp):
AAATTTAAAATTATATTATTTTAAAGAAAA
Found at i:7822225 original size:57 final size:57
Alignment explanation
Indices: 7822156--7822270 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
7822146 AAATTTAGAC
* *
7822156 ATCGCTTTGAGAAAAAATGTATAGTTTGAACACTGACTTTTATATTAAGCCAAAAAA
1 ATCGCTTTGAGAAAAAATGTATAATTTGAACACCGACTTTTATATTAAGCCAAAAAA
7822213 ATCGCTTTGAGAAAAAATGTATAATTTGAACACCGACTTTTATATTAAGCCAAAAAA
1 ATCGCTTTGAGAAAAAATGTATAATTTGAACACCGACTTTTATATTAAGCCAAAAAA
7822270 A
1 A
7822271 ATCAACAAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.30
Consensus pattern (57 bp):
ATCGCTTTGAGAAAAAATGTATAATTTGAACACCGACTTTTATATTAAGCCAAAAAA
Found at i:7827654 original size:15 final size:15
Alignment explanation
Indices: 7827634--7827677 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
7827624 TTTTTCAAAG
7827634 TTTGGTAAATGTTTC
1 TTTGGTAAATGTTTC
*
7827649 TTTGGTAAATGTTTT
1 TTTGGTAAATGTTTC
**
7827664 TTTGAAAAATGTTT
1 TTTGGTAAATGTTT
7827678 TTCAAAGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.25, C:0.02, G:0.18, T:0.55
Consensus pattern (15 bp):
TTTGGTAAATGTTTC
Found at i:7828147 original size:16 final size:16
Alignment explanation
Indices: 7828126--7828159 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7828116 TTACTATTCA
*
7828126 CGTGAATAGTGAATTT
1 CGTGAATAGTGAAATT
7828142 CGTGAATAGTGAAATT
1 CGTGAATAGTGAAATT
7828158 CG
1 CG
7828160 GTCGGCGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.09, G:0.26, T:0.32
Consensus pattern (16 bp):
CGTGAATAGTGAAATT
Found at i:7835252 original size:37 final size:37
Alignment explanation
Indices: 7835179--7835253 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 37
7835169 GTTGTAAAAT
* *
7835179 ATTTATATATTTTCTTTAAAAAATTTAAATTCATAAA
1 ATTTATATATTTTCTTTAAAAAATTAAAAATCATAAA
* *
7835216 ATTTATATAATTTTTTTTTAAAAATTAAAAAT-ATAAA
1 ATTTATAT-ATTTTCTTTAAAAAATTAAAAATCATAAA
7835253 A
1 A
7835254 ATGTTTAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 14 0.42
38 19 0.58
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (37 bp):
ATTTATATATTTTCTTTAAAAAATTAAAAATCATAAA
Found at i:7841816 original size:82 final size:82
Alignment explanation
Indices: 7841680--7841847 Score: 239
Period size: 86 Copynumber: 2.0 Consensus size: 82
7841670 GTCACGTTAA
* *
7841680 ATAAAACTAACGGGAAGTAATGTTGCGTGGGTAAACTATGAAAGAAAGAAAT-GAAGAAGAAGAA
1 ATAAAACTAACGGGAAGTAACGTTGCGTGGATAAACTATGAAAGAAAGAAATAGAAGAAGAAGAA
7841744 CAAAAAAGAGCGTGGAG
66 CAAAAAAGAGCGTGGAG
* * *
7841761 ATAAAACTAACGGGATGTAACGTTGGGGTGGATAAACTATGAAAGAAATAAATGAAAGAAGAAGA
1 ATAAAACTAACGGGAAGTAACGTT-GCGTGGATAAACTATGAAAGAAAGAAAT---AGAAGAAGA
*
7841826 AGAACAAAAAAGAGTGTGGAG
62 AGAACAAAAAAGAGCGTGGAG
7841847 A
1 A
7841848 GGGAGGGGGA
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
81 22 0.29
82 25 0.33
86 29 0.38
ACGTcount: A:0.50, C:0.07, G:0.28, T:0.15
Consensus pattern (82 bp):
ATAAAACTAACGGGAAGTAACGTTGCGTGGATAAACTATGAAAGAAAGAAATAGAAGAAGAAGAA
CAAAAAAGAGCGTGGAG
Found at i:7843446 original size:27 final size:27
Alignment explanation
Indices: 7843396--7843473 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
7843386 TGGCTAAGAC
* * *
7843396 ATAAAATAAAATAATACAAGAAAACAAA
1 ATAAAAT-AAATAAAATAATAAAACAAA
*
7843424 TTAAAATAAATAAAATAATAAAACAAA
1 ATAAAATAAATAAAATAATAAAACAAA
**
7843451 ACGAAAT-AATAAAATAAATAAAA
1 ATAAAATAAATAAAAT-AATAAAA
7843474 ATAAAAGAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 8 0.19
27 28 0.67
28 6 0.14
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.18
Consensus pattern (27 bp):
ATAAAATAAATAAAATAATAAAACAAA
Found at i:7843475 original size:18 final size:18
Alignment explanation
Indices: 7843425--7843477 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 18
7843415 GAAAACAAAT
7843425 TAAAATAAAT-AAAATAA
1 TAAAATAAATAAAAATAA
* *
7843442 TAAAACAAA-ACGAAATAA
1 TAAAATAAATA-AAAATAA
7843460 TAAAATAAATAAAAATAA
1 TAAAATAAATAAAAATAA
7843478 AAGAAGGGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 8 0.28
18 20 0.69
19 1 0.03
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.19
Consensus pattern (18 bp):
TAAAATAAATAAAAATAA
Found at i:7843541 original size:2 final size:2
Alignment explanation
Indices: 7843534--7843575 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
7843524 TTAGAACAAA
7843534 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7843576 TGTTGAACTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7843676 original size:31 final size:31
Alignment explanation
Indices: 7843609--7843668 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
7843599 CAATTTAAGG
*
7843609 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAATGGTATTTGGACTTGAATTGAATTTA
7843640 CAAAAT-GTATTTGGACTT-AATTGAATTTA
1 CAAAATGGTATTTGGACTTGAATTGAATTTA
7843669 TTCAAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 11 0.39
31 6 0.21
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.42
Consensus pattern (31 bp):
CAAAATGGTATTTGGACTTGAATTGAATTTA
Found at i:7843868 original size:21 final size:21
Alignment explanation
Indices: 7843842--7843883 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7843832 ATTTGAATAT
*
7843842 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
7843863 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
7843884 CCTATTTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:7844205 original size:34 final size:32
Alignment explanation
Indices: 7844166--7844236 Score: 97
Period size: 34 Copynumber: 2.2 Consensus size: 32
7844156 TTTTGTAAAG
*
7844166 GGGAAAGGTTCTAGCTAATCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTAATCCCG-G-AAAAACTA
* *
7844200 GGGAAAGGTTCTAGTTTATCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTAATCCCGGAAAAACTA
7844232 GGGAA
1 GGGAA
7844237 TTTGTAAGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 12 0.35
33 1 0.03
34 21 0.62
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTAATCCCGGAAAAACTA
Found at i:7845105 original size:19 final size:20
Alignment explanation
Indices: 7845081--7845128 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
7845071 AACGATTTTC
*
7845081 TTTTGAAAACAAAAAT-AGA
1 TTTTGAAAACAAAAATGAAA
* *
7845100 TTTTGAAAGCCAAAATGAAA
1 TTTTGAAAACAAAAATGAAA
7845120 TTTTGAAAA
1 TTTTGAAAA
7845129 AGGATTTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.29
Consensus pattern (20 bp):
TTTTGAAAACAAAAATGAAA
Found at i:7846415 original size:31 final size:31
Alignment explanation
Indices: 7846348--7846407 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
7846338 CAATTTAAGG
*
7846348 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAATGGTATTTGGACTTGAATTGAATTTA
7846379 CAAAAT-GTATTTGGACTT-AATTGAATTTA
1 CAAAATGGTATTTGGACTTGAATTGAATTTA
7846408 TTCAAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 11 0.39
31 6 0.21
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.42
Consensus pattern (31 bp):
CAAAATGGTATTTGGACTTGAATTGAATTTA
Found at i:7846650 original size:21 final size:21
Alignment explanation
Indices: 7846624--7846665 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7846614 ATTTGAATAT
*
7846624 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
7846645 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
7846666 CCCATTTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:7846727 original size:21 final size:21
Alignment explanation
Indices: 7846694--7846733 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
7846684 TTTTTACAGA
*
7846694 AAAATCATTCCCAAACGGCTCC
1 AAAATCA-TCCCCAACGGCTCC
7846716 AAAA-CATCCCCAACGGCT
1 AAAATCATCCCCAACGGCT
7846734 AGATATGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 2 0.12
22 4 0.24
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.15
Consensus pattern (21 bp):
AAAATCATCCCCAACGGCTCC
Found at i:7846987 original size:34 final size:32
Alignment explanation
Indices: 7846948--7847018 Score: 88
Period size: 34 Copynumber: 2.2 Consensus size: 32
7846938 TTTTGTAAAG
*
7846948 GGGAAAGGTTCTAGCTAATCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTAATCCCG-G-AAAAACTA
* * *
7846982 GGGAAATGTTCTAGTTTATCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTAATCCCGGAAAAACTA
7847014 GGGAA
1 GGGAA
7847019 TTTGTAAGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 12 0.36
33 1 0.03
34 20 0.61
ACGTcount: A:0.34, C:0.15, G:0.27, T:0.24
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTAATCCCGGAAAAACTA
Found at i:7849455 original size:53 final size:53
Alignment explanation
Indices: 7849387--7849517 Score: 226
Period size: 53 Copynumber: 2.5 Consensus size: 53
7849377 TGGGAATTGG
* *
7849387 ATATCCTTCGTCGTGAAGTTGAAATCCAAGTAAGTTGAATTGCTCCGAGTCCA
1 ATATCCTCCGCCGTGAAGTTGAAATCCAAGTAAGTTGAATTGCTCCGAGTCCA
*
7849440 ATATCCTCCGCCGTGAAGTTGAAATCCAAGTAAGTTGTATTGCTCCGAGTCCA
1 ATATCCTCCGCCGTGAAGTTGAAATCCAAGTAAGTTGAATTGCTCCGAGTCCA
*
7849493 ATATCCTCTGCCGTGAAGTTGAAAT
1 ATATCCTCCGCCGTGAAGTTGAAAT
7849518 TGGTTATGGA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 74 1.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (53 bp):
ATATCCTCCGCCGTGAAGTTGAAATCCAAGTAAGTTGAATTGCTCCGAGTCCA
Found at i:7849741 original size:106 final size:106
Alignment explanation
Indices: 7849486--7849747 Score: 355
Period size: 106 Copynumber: 2.5 Consensus size: 106
7849476 GTATTGCTCC
* * * * * *
7849486 GAGTCCAATATCC-TCTGCCGTGAAGTTGAAATTGGTTATGGAACTGAGAAATTGTTTGTTGACA
1 GAGTCCAATATCCTTC-GCTGTGAAGTTGAAATTGGCTATGAAATTGGGAAATTATTTGTTGACA
*
7849550 GTCAGCCGCCCCTTCGCCGTGAAGTTGAGCTTGTGCTGTCTT
65 GTCAGCCGCCCCTTCGCCGTGAAATTGAGCTTGTGCTGTCTT
*
7849592 GAGTCCAATATCCTTCGCTGTGAAGTTGAATTTGGCTATGAAATTGGGAAATTATTTGTTGACAG
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTATGAAATTGGGAAATTATTTGTTGACAG
* * * * *
7849657 TTAGTCGCCCCTTTGCTGTGAAATTGAGCTTGTGTTGTCTT
66 TCAGCCGCCCCTTCGCCGTGAAATTGAGCTTGTGCTGTCTT
* * * *
7849698 GAGTCCTATATCTTTCGCTGTGAAGTTGAAATTGACTATGAAATTAGGAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTATGAAATTGGGAA
7849748 GCCCATTCGT
Statistics
Matches: 137, Mismatches: 18, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
106 135 0.99
107 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTATGAAATTGGGAAATTATTTGTTGACAG
TCAGCCGCCCCTTCGCCGTGAAATTGAGCTTGTGCTGTCTT
Found at i:7850832 original size:14 final size:14
Alignment explanation
Indices: 7850813--7850839 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7850803 TATTTTTATT
7850813 TTCTTTTTCTTTTG
1 TTCTTTTTCTTTTG
7850827 TTCTTTTTCTTTT
1 TTCTTTTTCTTTT
7850840 TTTTTCAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.15, G:0.04, T:0.81
Consensus pattern (14 bp):
TTCTTTTTCTTTTG
Found at i:7861052 original size:27 final size:27
Alignment explanation
Indices: 7861002--7861079 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
7860992 TGGCTAAGAC
* * *
7861002 ATAAAATAAAATAATACAAGAAAACAAA
1 ATAAAAT-AAATAAAATAATAAAACAAA
*
7861030 TTAAAATAAATAAAATAATAAAACAAA
1 ATAAAATAAATAAAATAATAAAACAAA
**
7861057 ACGAAAT-AATAAAATGAATAAAA
1 ATAAAATAAATAAAAT-AATAAAA
7861080 ATAAAACAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 8 0.19
27 28 0.67
28 6 0.14
ACGTcount: A:0.73, C:0.05, G:0.04, T:0.18
Consensus pattern (27 bp):
ATAAAATAAATAAAATAATAAAACAAA
Found at i:7861081 original size:18 final size:18
Alignment explanation
Indices: 7861031--7861083 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
7861021 GAAAACAAAT
7861031 TAAAATAAAT-AAAATAA
1 TAAAATAAATAAAAATAA
* *
7861048 TAAAACAAA-ACGAAATAA
1 TAAAATAAATA-AAAATAA
*
7861066 TAAAATGAATAAAAATAA
1 TAAAATAAATAAAAATAA
7861084 AACAAAACAA
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
17 8 0.29
18 19 0.68
19 1 0.04
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.19
Consensus pattern (18 bp):
TAAAATAAATAAAAATAA
Found at i:7861088 original size:33 final size:35
Alignment explanation
Indices: 7861005--7861096 Score: 113
Period size: 33 Copynumber: 2.8 Consensus size: 35
7860995 CTAAGACATA
* *
7861005 AAATAAAATAATACAAGAAAAC-AAAT--TAAAAT
1 AAATAAAATAATAAAACAAAACAAAATAATAAAAT
*
7861037 AAATAAAATAATAAAACAAAACGAAATAATAAAAT
1 AAATAAAATAATAAAACAAAACAAAATAATAAAAT
*
7861072 GAAT-AAA-AATAAAACAAAACAAAAT
1 AAATAAAATAATAAAACAAAACAAAAT
7861097 GAAGGGAAGA
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
32 20 0.38
33 21 0.40
34 3 0.06
35 9 0.17
ACGTcount: A:0.74, C:0.07, G:0.03, T:0.16
Consensus pattern (35 bp):
AAATAAAATAATAAAACAAAACAAAATAATAAAAT
Found at i:7861163 original size:2 final size:2
Alignment explanation
Indices: 7861151--7861189 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
7861141 TTAGAACAAA
* *
7861151 AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7861190 AAAACGTGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7862795 original size:23 final size:23
Alignment explanation
Indices: 7862763--7862818 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
7862753 TTTAAAAATA
*
7862763 ATAATAATATTTATACAATATAT
1 ATAATTATATTTATACAATATAT
* *
7862786 ATAATTATATATATATAATATAT
1 ATAATTATATTTATACAATATAT
7862809 A-AA-TATATTT
1 ATAATTATATTT
7862819 CGGTCGTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 6 0.21
22 2 0.07
23 21 0.72
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
ATAATTATATTTATACAATATAT
Found at i:7863370 original size:51 final size:51
Alignment explanation
Indices: 7863294--7863747 Score: 384
Period size: 51 Copynumber: 8.9 Consensus size: 51
7863284 TAAAACCACG
* ** * ** * *
7863294 TGTTTAATTAATATTATATTGACAAATATTTTAGATG-ATTCGTTTGGTACA
1 TGTTTAATTAGTATTGGATTGACAAATACTTTAGA-GAATTCACTTAGCACA
* * * *
7863345 TGTTTAATTAGTATTGGATTGACAAATATTTTATAGGATTCACTTAGCACG
1 TGTTTAATTAGTATTGGATTGACAAATACTTTAGAGAATTCACTTAGCACA
* * *
7863396 TGTTTAATTAATATT-GATTGACAAATACTTTGGAGAATTCACATAGCACA
1 TGTTTAATTAGTATTGGATTGACAAATACTTTAGAGAATTCACTTAGCACA
* * * * *
7863446 TGTTTAATCAGTATTGGATTGATAAATATTTTGGAGAATTCACTTAGCACG
1 TGTTTAATTAGTATTGGATTGACAAATACTTTAGAGAATTCACTTAGCACA
* * *
7863497 TGTTTAATTAGTATTAGATTGACAAATACTTTAAAGAATTCACTTAACACA
1 TGTTTAATTAGTATTGGATTGACAAATACTTTAGAGAATTCACTTAGCACA
* * * * * * *
7863548 TTTTTAGTTAGTATTGGGTTGACAATTA-TTTCGAAGGATTCACTTAGCACG
1 TGTTTAATTAGTATTGGATTGACAAATACTTTAG-AGAATTCACTTAGCACA
* * * *
7863599 TGTTTAATCAGTATTGGATTGACAAATACTTTAAAGGATTCACTTAACACA
1 TGTTTAATTAGTATTGGATTGACAAATACTTTAGAGAATTCACTTAGCACA
* ** * * * * * * *
7863650 TCTTTAGCTAGTATTGGGTTGATAAATACTCT-GAAAGATTTACTTAACACG
1 TGTTTAATTAGTATTGGATTGACAAATACTTTAGAGA-ATTCACTTAGCACA
**
7863701 TGTTT-ATTAACATTTGG-TTGACAAATACTTT-GA-ATGATTCACTTAGC
1 TGTTTAATTAGTA-TTGGATTGACAAATACTTTAGAGA--ATTCACTTAGC
7863748 GGTTTACAAG
Statistics
Matches: 326, Mismatches: 70, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
49 1 0.00
50 74 0.23
51 248 0.76
52 3 0.01
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (51 bp):
TGTTTAATTAGTATTGGATTGACAAATACTTTAGAGAATTCACTTAGCACA
Found at i:7863578 original size:102 final size:101
Alignment explanation
Indices: 7863290--7863745 Score: 459
Period size: 102 Copynumber: 4.5 Consensus size: 101
7863280 TAAATAAAAC
* * * ** ***
7863290 CACGTGTTTAATTAATATTATATTGACAAATATTTTAGATGATTCGTTTGGTACATGTTTAATTA
1 CACGTGTTTAATTAATATTAGATTGACAAATACTTTA-AAGATTCACTTAACACATGTTTAATTA
** *
7863355 GTATTGGATTGACAAATATTTTATAGGATTCACTTAG
65 GTATTGGATTGACAAATATTTTGGAGAATTCACTTAG
** * * *
7863392 CACGTGTTTAATTAATATT-GATTGACAAATACTTTGGAGAATTCACATAGCACATGTTTAATCA
1 CACGTGTTTAATTAATATTAGATTGACAAATACTTTAAAG-ATTCACTTAACACATGTTTAATTA
*
7863456 GTATTGGATTGATAAATATTTTGGAGAATTCACTTAG
65 GTATTGGATTGACAAATATTTTGGAGAATTCACTTAG
* * *
7863493 CACGTGTTTAATTAGTATTAGATTGACAAATACTTTAAAGAATTCACTTAACACATTTTTAGTTA
1 CACGTGTTTAATTAATATTAGATTGACAAATACTTTAAAG-ATTCACTTAACACATGTTTAATTA
* * * * *
7863558 GTATTGGGTTGACAATTATTTCGAAGGATTCACTTAG
65 GTATTGGATTGACAAATATTTTGGAGAATTCACTTAG
* * * * **
7863595 CACGTGTTTAATCAGTATTGGATTGACAAATACTTTAAAGGATTCACTTAACACATCTTTAGCTA
1 CACGTGTTTAATTAATATTAGATTGACAAATACTTTAAA-GATTCACTTAACACATGTTTAATTA
* * * * * * *
7863660 GTATTGGGTTGATAAATACTCT-GAAAGATTTACTTAA
65 GTATTGGATTGACAAATATTTTGGAGA-ATTCACTTAG
* * * *
7863697 CACGTGTTT-ATTAACATTTGGTTGACAAATACTTTGAATGATTCACTTA
1 CACGTGTTTAATTAATATTAGATTGACAAATACTTT-AAAGATTCACTTA
7863746 GCGGTTTACA
Statistics
Matches: 300, Mismatches: 49, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
100 1 0.00
101 115 0.38
102 183 0.61
103 1 0.00
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.39
Consensus pattern (101 bp):
CACGTGTTTAATTAATATTAGATTGACAAATACTTTAAAGATTCACTTAACACATGTTTAATTAG
TATTGGATTGACAAATATTTTGGAGAATTCACTTAG
Found at i:7867710 original size:4 final size:4
Alignment explanation
Indices: 7867701--7867744 Score: 61
Period size: 4 Copynumber: 11.0 Consensus size: 4
7867691 TCTGGTTTTG
* * *
7867701 ATAT ATAT ATAT ATAT ATAT ATAT ATAT TTAT ATTT ATGT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
7867745 GTATGTATGT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (4 bp):
ATAT
Found at i:7867716 original size:10 final size:10
Alignment explanation
Indices: 7867701--7867744 Score: 61
Period size: 10 Copynumber: 4.4 Consensus size: 10
7867691 TCTGGTTTTG
7867701 ATATATATAT
1 ATATATATAT
7867711 ATATATATAT
1 ATATATATAT
*
7867721 ATATATATTT
1 ATATATATAT
* *
7867731 ATATTTATGT
1 ATATATATAT
7867741 ATAT
1 ATAT
7867745 GTATGTATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (10 bp):
ATATATATAT
Found at i:7867748 original size:6 final size:6
Alignment explanation
Indices: 7867701--7867744 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
7867691 TCTGGTTTTG
* * *
7867701 ATATAT ATATAT ATATAT ATATAT ATATTT ATATTT ATGTAT AT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT AT
7867745 GTATGTATGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (6 bp):
ATATAT
Found at i:7867749 original size:10 final size:10
Alignment explanation
Indices: 7867701--7867752 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
7867691 TCTGGTTTTG
*
7867701 ATATATATAT
1 ATATATATGT
*
7867711 ATATATATAT
1 ATATATATGT
*
7867721 ATATATATTT
1 ATATATATGT
*
7867731 ATATTTATGT
1 ATATATATGT
*
7867741 ATATGTATGT
1 ATATATATGT
7867751 AT
1 AT
7867753 GTATGTATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 38 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (10 bp):
ATATATATGT
Found at i:7868709 original size:2 final size:2
Alignment explanation
Indices: 7868702--7868743 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
7868692 ACAATTAGTG
7868702 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7868744 GACAAATGAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7875821 original size:14 final size:14
Alignment explanation
Indices: 7875804--7875837 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7875794 ACATATAATT
*
7875804 TTTAATTATATTAA
1 TTTAATTATATAAA
*
7875818 TTTAAATATATAAA
1 TTTAATTATATAAA
7875832 TTTAAT
1 TTTAAT
7875838 GATAGATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TTTAATTATATAAA
Found at i:7877340 original size:59 final size:59
Alignment explanation
Indices: 7877273--7877436 Score: 215
Period size: 59 Copynumber: 2.8 Consensus size: 59
7877263 ATTAAGAAAT
* * *
7877273 ATTCTGAACAGATATTATTTTATAATCACCCCAAACTATTCAAAAAAA-ATTAATAAAAA
1 ATTCTGAACAGATAATATCTTATAATCA-TCCAAACTATTCAAAAAAACATTAATAAAAA
* *
7877332 ATTCTGAACAGATAATATCTTATAATCATTCCAAACTATT-AAAAAAACTTTGATAAAAA
1 ATTCTGAACAGATAATATCTTATAATCA-TCCAAACTATTCAAAAAAACATTAATAAAAA
* * * *
7877391 ATTCTTAACATATAATATCTTATAATCATCCAAATTATTCTAAAAA
1 ATTCTGAACAGATAATATCTTATAATCATCCAAACTATTCAAAAAA
7877437 GAAAAAACTT
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
58 17 0.18
59 76 0.82
ACGTcount: A:0.49, C:0.15, G:0.03, T:0.34
Consensus pattern (59 bp):
ATTCTGAACAGATAATATCTTATAATCATCCAAACTATTCAAAAAAACATTAATAAAAA
Found at i:7880088 original size:34 final size:32
Alignment explanation
Indices: 7880049--7880122 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 32
7880039 ATGAAATTAT
7880049 AAAATTT-TAAAAATA-TAAAATTAAATTATTAATA
1 AAAATTTATAAAAA-AGT-AAATTAAATTA-T-ATA
*
7880083 AAAATTTATAAAAAAGTTAATTAAATTATATA
1 AAAATTTATAAAAAAGTAAATTAAATTATATA
7880115 AAAATTTA
1 AAAATTTA
7880123 AATTTTTTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
32 11 0.30
33 1 0.03
34 18 0.49
35 7 0.19
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (32 bp):
AAAATTTATAAAAAAGTAAATTAAATTATATA
Found at i:7893367 original size:2 final size:2
Alignment explanation
Indices: 7893360--7893401 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
7893350 TGTCTGTATG
7893360 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7893402 CGGATATACC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7894255 original size:20 final size:23
Alignment explanation
Indices: 7894219--7894278 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
7894209 GGACACAAAC
* *
7894219 ATTATTATAATAAAATA-AAAT-
1 ATTATTTTAAAAAAATACAAATA
7894240 ATT-TTTTAAAAAAATACAAATA
1 ATTATTTTAAAAAAATACAAATA
*
7894262 ATTATTTTAAAATAATA
1 ATTATTTTAAAAAAATA
7894279 TCGTGGCGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 11 0.33
21 7 0.21
22 3 0.09
23 12 0.36
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
ATTATTTTAAAAAAATACAAATA
Found at i:7896452 original size:251 final size:247
Alignment explanation
Indices: 7896077--7896569 Score: 853
Period size: 251 Copynumber: 2.0 Consensus size: 247
7896067 GATGGAAATC
*
7896077 ATATATCGCGACATTTTGCTATACGGTAACATTTTAACGTTTTAATATATTTAAATATTAGTATA
1 ATATATCACGACATTTTGCTATACGGTAACATTTTAACGTTTTAATATATTTAAATATTAGTATA
7896142 ATTTATTTATTTAATGCATGATTATTAGTTTAAAATTAATGTTTGTAATTATTTAATTTTAGGAG
66 ATTTATTTATTTAATGCATGATTATTAGTTTAAAATTAATGTTTGTAATTATTTAATTTTAGGAG
* *
7896207 AGGGGCCATGTATTATATCCTTTGATTAGAAATTTTAAGTTAGTGATACATAGTCGTGTCTTGCC
131 AGAGACCATGTATTATATCCTTTGATTAGAAATTTTAAGTTAGTGATACATAGTCGTGTCTTGCC
7896272 GTATTTAATAGAGGCTGAATTCAGTCACAT-GTATATATGAGGGTCGGAATT
196 GTATTTAATAGAGGCTGAATTCAGTCACATAGTATATATGAGGGTCGGAATT
7896323 ATATATCACGACATTTTGCTAATACGGTAACATTTTAACGTTTTAATATAATTTAAATTATTAGT
1 ATATATCACGACATTTTGCT-ATACGGTAACATTTTAACGTTTTAATAT-ATTTAAA-TATTAGT
*
7896388 AATAATTTATTTATTTAATGTATGATTATTAGTTTAAAAATTAATGTTTGTAATTATTTAATTTT
63 -ATAATTTATTTATTTAATGCATGATTATTAGTTT-AAAATTAATGTTTGTAATTATTTAATTTT
* *
7896453 AGGAGAGAGACCATGTATTATATCCTTTTATTAGGAATTTTAAGTTAGTGATACATAGTCGTGTC
126 AGGAGAGAGACCATGTATTATATCCTTTGATTAGAAATTTTAAGTTAGTGATACATAGTCGTGTC
* *
7896518 TTGCCGTATTTAGTAGAGGCTGGATTCAGTCACATAGGTATATATGAGGGTC
191 TTGCCGTATTTAATAGAGGCTGAATTCAGTCACATA-GTATATATGAGGGTC
7896570 ACTGTAAGAT
Statistics
Matches: 232, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
246 19 0.08
247 28 0.12
248 7 0.03
249 7 0.03
250 33 0.14
251 123 0.53
253 15 0.06
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.42
Consensus pattern (247 bp):
ATATATCACGACATTTTGCTATACGGTAACATTTTAACGTTTTAATATATTTAAATATTAGTATA
ATTTATTTATTTAATGCATGATTATTAGTTTAAAATTAATGTTTGTAATTATTTAATTTTAGGAG
AGAGACCATGTATTATATCCTTTGATTAGAAATTTTAAGTTAGTGATACATAGTCGTGTCTTGCC
GTATTTAATAGAGGCTGAATTCAGTCACATAGTATATATGAGGGTCGGAATT
Found at i:7898576 original size:34 final size:33
Alignment explanation
Indices: 7898509--7898596 Score: 106
Period size: 33 Copynumber: 2.6 Consensus size: 33
7898499 TAATACTTTT
**
7898509 TTTATTTCATTAATTTTGTTGGATTTATTTTAA
1 TTTATTTTGTTAATTTTGTTGGATTTATTTTAA
*
7898542 TTTATTTTGTTAAATTTGTTGGACTTT-TTGTTAA
1 TTTATTTTGTTAATTTTGTTGGA-TTTATT-TTAA
*
7898576 TGTATTTTGGTTAATTTTGTT
1 TTTATTTT-GTTAATTTTGTT
7898597 TATTACCATT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
33 22 0.47
34 14 0.30
35 11 0.23
ACGTcount: A:0.20, C:0.02, G:0.14, T:0.64
Consensus pattern (33 bp):
TTTATTTTGTTAATTTTGTTGGATTTATTTTAA
Found at i:7910052 original size:12 final size:11
Alignment explanation
Indices: 7910028--7910062 Score: 54
Period size: 12 Copynumber: 3.2 Consensus size: 11
7910018 ATTATAACTA
7910028 ATATTAAAT-T
1 ATATTAAATAT
7910038 ATATTAAATAAT
1 ATATTAAAT-AT
7910050 ATATTAAATAT
1 ATATTAAATAT
7910061 AT
1 AT
7910063 TTATGTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 9 0.39
11 4 0.17
12 10 0.43
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
ATATTAAATAT
Found at i:7913342 original size:126 final size:127
Alignment explanation
Indices: 7913012--7913373 Score: 562
Period size: 123 Copynumber: 2.9 Consensus size: 127
7913002 ATAATCGAGT
7913012 ACTATTCACATGAAGGCGCGTTCCCGGGGCGCGCCTTCCATTATTTCGTCAGAGAATAT-TTATC
1 ACTATTCACATGAAGGCGCGTTCCCGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATC
7913076 ATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCA-TACCTATTATTTC
66 ATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
* *** * *
7913137 TC-A-TGGGATGAA-GCGCGTTCCCGGGGGCACGCCATCCATTATTTCGTCAGAGAATATG-TAT
1 ACTATTCACATGAAGGCGCGTTCCC-GGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTAT
* *
7913198 CATTGCCCTATTATGTCACTCATGTCCCTTGGGGACACTAGATATATCAGTTCCTATTATTTC
65 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
*
7913261 ACTATTCACATGAAGGCGCGTTCCCGGGGCGCGCCTTCCATTATTTCATCAGAGAATATGTTATC
1 ACTATTCACATGAAGGCGCGTTCCCGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATC
*
7913326 A-TGCCCTATTATGTCACTCATGTCCCTCGGGAACACT--ATATATCAGTA
66 ATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTA
7913374 AATCAGGTAA
Statistics
Matches: 212, Mismatches: 18, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
122 10 0.05
123 89 0.42
124 24 0.11
125 2 0.01
126 72 0.34
127 15 0.07
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (127 bp):
ACTATTCACATGAAGGCGCGTTCCCGGGGCGCGCCTTCCATTATTTCGTCAGAGAATATGTTATC
ATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
Found at i:7913821 original size:33 final size:34
Alignment explanation
Indices: 7913760--7913859 Score: 139
Period size: 33 Copynumber: 3.0 Consensus size: 34
7913750 AAATTTACTG
*
7913760 TTAAATTTCGAATACTATAATTTATATTTTAAAT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
* * * *
7913794 TTAAATTT-GAATAATATTATTTTTATTTTTATT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
*
7913827 TTAAATTTCGAATAATATAATTTGTATTTTAAA
1 TTAAATTTCGAATAATATAATTTATATTTTAAA
7913860 AACATTTATC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
33 28 0.50
34 28 0.50
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (34 bp):
TTAAATTTCGAATAATATAATTTATATTTTAAAT
Found at i:7914405 original size:21 final size:21
Alignment explanation
Indices: 7914381--7914440 Score: 104
Period size: 20 Copynumber: 2.9 Consensus size: 21
7914371 ATAAAACCCT
7914381 GCGGGCTAGGCATGTAACCTG
1 GCGGGCTAGGCATGTAACCTG
7914402 GCGGGCTAGGCATGT-ACCTG
1 GCGGGCTAGGCATGTAACCTG
*
7914422 GCGGGCTAGGAATGTAACC
1 GCGGGCTAGGCATGTAACC
7914441 CTGCGGCTCG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
20 19 0.51
21 18 0.49
ACGTcount: A:0.20, C:0.23, G:0.38, T:0.18
Consensus pattern (21 bp):
GCGGGCTAGGCATGTAACCTG
Found at i:7914448 original size:20 final size:21
Alignment explanation
Indices: 7914375--7914465 Score: 100
Period size: 20 Copynumber: 4.4 Consensus size: 21
7914365 TATGGTATAA
*
7914375 AACCCTGCGGGCTAGGCATGT
1 AACCCTGCGGGCTAGGAATGT
*
7914396 AA-CCTGGCGGGCTAGGCATGT
1 AACCCT-GCGGGCTAGGAATGT
7914417 -A-CCTGGCGGGCTAGGAATGT
1 AACCCT-GCGGGCTAGGAATGT
*
7914437 AACCCTGC-GGCTCGGAATGT
1 AACCCTGCGGGCTAGGAATGT
*
7914457 AACCATGCG
1 AACCCTGCG
7914466 AGATGTCATA
Statistics
Matches: 63, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
20 40 0.63
21 20 0.32
22 3 0.05
ACGTcount: A:0.21, C:0.26, G:0.34, T:0.19
Consensus pattern (21 bp):
AACCCTGCGGGCTAGGAATGT
Found at i:7916297 original size:30 final size:32
Alignment explanation
Indices: 7916233--7916310 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 32
7916223 ATAATAATTC
*
7916233 TAAATAAATAATAATTATATAAATATTATTTTAA
1 TAAA-AAATAATAATTACATAAATATTA-TTTAA
*
7916267 TAAAAAATAATATTTACATAAATA-TA-TTAA
1 TAAAAAATAATAATTACATAAATATTATTTAA
7916297 TATAAAAATAATAA
1 TA-AAAAATAATAA
7916311 CTATTTAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
30 6 0.15
31 10 0.25
32 2 0.05
33 18 0.45
34 4 0.10
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.38
Consensus pattern (32 bp):
TAAAAAATAATAATTACATAAATATTATTTAA
Found at i:7927143 original size:3 final size:3
Alignment explanation
Indices: 7927135--7927164 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
7927125 CGATGCTTTT
*
7927135 TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7927165 AATACTTGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7929736 original size:20 final size:20
Alignment explanation
Indices: 7929711--7929882 Score: 213
Period size: 20 Copynumber: 8.6 Consensus size: 20
7929701 GATTTTCAAG
* ** *
7929711 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
*
7929731 AATCGCAACGCG-AACACGTA
1 AATCGCAACGCGTATC-CGTA
*
7929751 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
7929771 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
7929791 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
7929811 TATCGCAACGCGTATCTGTA
1 AATCGCAACGCGTATCCGTA
* *
7929831 AATCGCAACG-ATAATCAGTA
1 AATCGCAACGCGT-ATCCGTA
7929851 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
7929871 AATCGCAACGCG
1 AATCGCAACGCG
7929883 ATTTTTAAAG
Statistics
Matches: 132, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
19 2 0.02
20 127 0.96
21 3 0.02
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:7930301 original size:33 final size:33
Alignment explanation
Indices: 7930262--7930332 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
7930252 TTCACTTAGA
7930262 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
7930295 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
7930328 TTTCA
1 TTTCA
7930333 AGTTAGTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.11, C:0.24, G:0.17, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:7930437 original size:21 final size:21
Alignment explanation
Indices: 7930411--7930487 Score: 102
Period size: 21 Copynumber: 3.7 Consensus size: 21
7930401 TGCAGAAGAG
7930411 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGATAAATGAAAA
* **
7930432 TCGCAACGTGA-AAATGACTA
1 TCGCAACGAGATAAATGAAAA
*
7930452 TCTGCAACGAGAAAAATGAAAA
1 TC-GCAACGAGATAAATGAAAA
7930474 TCGCAACGAGATAA
1 TCGCAACGAGATAA
7930488 TCGCAACGCG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
20 9 0.19
21 29 0.62
22 9 0.19
ACGTcount: A:0.48, C:0.17, G:0.19, T:0.16
Consensus pattern (21 bp):
TCGCAACGAGATAAATGAAAA
Found at i:7930491 original size:14 final size:14
Alignment explanation
Indices: 7930469--7930533 Score: 58
Period size: 14 Copynumber: 4.3 Consensus size: 14
7930459 CGAGAAAAAT
7930469 GAAAATCGCAACGA
1 GAAAATCGCAACGA
*
7930483 GATAATCGCAACGCGAAA
1 GAAAATCGCAA--CG--A
7930501 TGAAAATCGCAACGA
1 -GAAAATCGCAACGA
* *
7930516 GAGAATCGCAACGC
1 GAAAATCGCAACGA
7930530 GAAA
1 GAAA
7930534 CCAAAATCGC
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
14 25 0.61
15 1 0.02
16 2 0.05
17 2 0.05
18 1 0.02
19 10 0.24
ACGTcount: A:0.46, C:0.22, G:0.23, T:0.09
Consensus pattern (14 bp):
GAAAATCGCAACGA
Found at i:7930503 original size:33 final size:33
Alignment explanation
Indices: 7930465--7930544 Score: 133
Period size: 33 Copynumber: 2.4 Consensus size: 33
7930455 GCAACGAGAA
*
7930465 AAATGAAAATCGCAACGAGATAATCGCAACGCG
1 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
7930498 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
1 AAATGAAAATCGCAACGAGAGAATCGCAACGCG
**
7930531 AAACCAAAATCGCA
1 AAATGAAAATCGCA
7930545 TTGCGATTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.47, C:0.23, G:0.20, T:0.10
Consensus pattern (33 bp):
AAATGAAAATCGCAACGAGAGAATCGCAACGCG
Found at i:7930562 original size:19 final size:19
Alignment explanation
Indices: 7930540--7930667 Score: 78
Period size: 19 Copynumber: 7.1 Consensus size: 19
7930530 GAAACCAAAA
*
7930540 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
7930559 TCGCGTTACGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
7930573 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
7930592 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
7930606 TCTCGTTGCGATTTTCATTT
1 TCGCGTTGCGATTTTCA-TT
* ***
7930626 CTCTCGTTGCGACAGTCATT
1 -TCGCGTTGCGATTTTCATT
*
7930646 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
7930666 TC
1 TC
7930668 AACCAAAAGA
Statistics
Matches: 85, Mismatches: 12, Indels: 24
0.70 0.10 0.20
Matches are distributed among these distances:
14 19 0.22
16 6 0.07
17 6 0.07
19 21 0.25
20 19 0.22
21 14 0.16
ACGTcount: A:0.12, C:0.25, G:0.18, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:7930584 original size:14 final size:14
Alignment explanation
Indices: 7930562--7930618 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
7930552 TTTCATTTCG
*
7930562 CGTTACGATTCTCT
1 CGTTGCGATTCTCT
*
7930576 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
7930595 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
7930609 CGTTGCGATT
1 CGTTGCGATT
7930619 TTCATTTCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 19 0.54
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.11, C:0.25, G:0.21, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:7930587 original size:33 final size:33
Alignment explanation
Indices: 7930545--7930667 Score: 156
Period size: 33 Copynumber: 3.5 Consensus size: 33
7930535 CAAAATCGCA
7930545 TTGCGATTTTCATTTCGCGTTACGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTACGATTCTCTCG
*
7930578 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTACGATTCTCTCG
*
7930611 TTGCGATTTTCATTTCTCTCGTTGCGACAGTCATTCTCTCG
1 TTGCGATTTTCA-TT-TCGCGTT---AC-G--ATTCTCTCG
7930652 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
7930668 AACCAAAAGA
Statistics
Matches: 79, Mismatches: 3, Indels: 10
0.86 0.03 0.11
Matches are distributed among these distances:
33 44 0.56
34 2 0.03
35 6 0.08
38 1 0.01
39 3 0.04
40 2 0.03
41 21 0.27
ACGTcount: A:0.11, C:0.24, G:0.18, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTACGATTCTCTCG
Found at i:7930629 original size:21 final size:21
Alignment explanation
Indices: 7930603--7930667 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
7930593 CGCGTTGCGA
7930603 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
7930624 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
7930644 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
7930665 TTC
1 TTC
7930668 AACCAAAAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.11, C:0.26, G:0.15, T:0.48
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:7932696 original size:93 final size:93
Alignment explanation
Indices: 7932346--7932660 Score: 605
Period size: 93 Copynumber: 3.4 Consensus size: 93
7932336 TAGATTGCTT
* *
7932346 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTC
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
7932411 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
7932439 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
7932504 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
7932532 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
7932597 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
7932625 AGTAAA-TTGTTCGGTTGCTGCCAATTCTGCTAAACT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
7932661 AATACCCTGA
Statistics
Matches: 220, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
92 30 0.14
93 190 0.86
ACGTcount: A:0.22, C:0.14, G:0.19, T:0.45
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:7932795 original size:14 final size:14
Alignment explanation
Indices: 7932776--7932832 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
7932766 CGAAACTTAA
7932776 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
7932790 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
*
7932809 AATCGCAACGACAG
1 AATCGCAACGAGAG
7932823 AATCGCAACG
1 AATCGCAACG
7932833 CGAAACCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 19 0.54
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.44, C:0.25, G:0.23, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:7932814 original size:19 final size:18
Alignment explanation
Indices: 7932790--7932881 Score: 65
Period size: 19 Copynumber: 5.4 Consensus size: 18
7932780 GCAACGAGAG
7932790 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAA-GAA
*
7932809 AATCGCAA--CGACAG--
1 AATCGCAACGCGAAAGAA
*
7932823 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAA-GAA
*
7932842 AATCGCAA--CG--ACAA
1 AATCGCAACGCGAAAGAA
*
7932856 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAA-GAA
7932875 AATCGCA
1 AATCGCA
7932882 TTGCGATTTT
Statistics
Matches: 60, Mismatches: 3, Indels: 20
0.72 0.04 0.24
Matches are distributed among these distances:
14 19 0.32
15 1 0.02
16 7 0.12
17 6 0.10
18 1 0.02
19 26 0.43
ACGTcount: A:0.47, C:0.28, G:0.17, T:0.08
Consensus pattern (18 bp):
AATCGCAACGCGAAAGAA
Done.