Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008527.1 Hibiscus syriacus cultivar Beakdansim tig00111402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9057482
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 33 of 37
Found at i:7932816 original size:33 final size:33
Alignment explanation
Indices: 7932758--7932881 Score: 185
Period size: 33 Copynumber: 3.7 Consensus size: 33
7932748 TAGTTTACTT
* * *
7932758 TCGCAACACGAAACTTAAAATCGCAACGAGAGAA
1 TCGCAACGCGAAAC-CAAAATCGCAACGACAGAA
**
7932792 TCGCAACGCGAAATGAAAATCGCAACGACAGAA
1 TCGCAACGCGAAACCAAAATCGCAACGACAGAA
*
7932825 TCGCAACGCGAAACCAAAATCGCAACGACAAAA
1 TCGCAACGCGAAACCAAAATCGCAACGACAGAA
7932858 TCGCAACGCGAAACCAAAATCGCA
1 TCGCAACGCGAAACCAAAATCGCA
7932882 TTGCGATTTT
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
33 71 0.86
34 12 0.14
ACGTcount: A:0.46, C:0.27, G:0.18, T:0.09
Consensus pattern (33 bp):
TCGCAACGCGAAACCAAAATCGCAACGACAGAA
Found at i:7932858 original size:14 final size:14
Alignment explanation
Indices: 7932807--7932865 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
7932797 ACGCGAAATG
7932807 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
7932821 AGAATCGCAACGCGAAACC
1 AAAATCGCAA--CG--A-C
7932840 AAAATCGCAACGAC
1 AAAATCGCAACGAC
7932854 AAAATCGCAACG
1 AAAATCGCAACG
7932866 CGAAACCAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 22 0.58
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 10 0.26
ACGTcount: A:0.47, C:0.29, G:0.17, T:0.07
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:7932899 original size:19 final size:19
Alignment explanation
Indices: 7932877--7933029 Score: 121
Period size: 19 Copynumber: 8.6 Consensus size: 19
7932867 GAAACCAAAA
*
7932877 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
7932896 TCGCGTTGTGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
7932910 TCTCGTTGCGA-TTTCATT
1 TCGCGTTGCGATTTTCATT
* *
7932928 TCGCATTGCGA--TTC-TA
1 TCGCGTTGCGATTTTCATT
7932944 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
7932961 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
* *
7932980 TCTCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTCATT
*
7932999 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
7933019 TCGTGTTGCGA
1 TCGCGTTGCGA
7933030 AAGTAAACTA
Statistics
Matches: 105, Mismatches: 19, Indels: 19
0.73 0.13 0.13
Matches are distributed among these distances:
14 16 0.15
15 3 0.03
16 5 0.05
17 8 0.08
18 9 0.09
19 52 0.50
20 12 0.11
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:7932986 original size:38 final size:33
Alignment explanation
Indices: 7932882--7933011 Score: 163
Period size: 32 Copynumber: 3.8 Consensus size: 33
7932872 CAAAATCGCA
*
7932882 TTGCGATTTTCATTTCGCGTTGTGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
7932915 TTGCGA-TTTCATTTCGCATTGCGATTCTATCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
*
7932947 TTGCGATTTTCATTTCGCGTTGCGATTTTGGTTTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGA---T--TCTCTCG
*
7932985 TTGCGATTCTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
7933012 TTAAGTTTCG
Statistics
Matches: 84, Mismatches: 7, Indels: 12
0.82 0.07 0.12
Matches are distributed among these distances:
32 29 0.35
33 24 0.29
35 1 0.01
36 1 0.01
38 29 0.35
ACGTcount: A:0.11, C:0.21, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:7934971 original size:14 final size:14
Alignment explanation
Indices: 7934952--7934987 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
7934942 ATTGTTTAAT
7934952 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
7934966 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
7934980 TGATTTGT
1 TGATTTGT
7934988 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:7935102 original size:19 final size:19
Alignment explanation
Indices: 7935078--7935165 Score: 123
Period size: 19 Copynumber: 4.8 Consensus size: 19
7935068 GCATTATGTT
7935078 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAATGC
7935097 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAATGC
*
7935114 G--A-GAGAATCGCAATGC
1 GAAATGAAAATCGCAATGC
7935130 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAATGC
7935149 GGAAATGAAAATCGCAA
1 -GAAATGAAAATCGCAA
7935166 CGAGAGAATC
Statistics
Matches: 61, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
14 10 0.16
15 1 0.02
16 2 0.03
17 2 0.03
18 1 0.02
19 29 0.48
20 16 0.26
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.14
Consensus pattern (19 bp):
GAAATGAAAATCGCAATGC
Found at i:7935197 original size:53 final size:53
Alignment explanation
Indices: 7935078--7935184 Score: 207
Period size: 53 Copynumber: 2.0 Consensus size: 53
7935068 GCATTATGTT
7935078 GAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGC
1 GAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGC
7935130 GAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGC
1 GAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGC
7935183 GA
1 GA
7935185 TTTTCATTTC
Statistics
Matches: 54, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 19 0.35
53 35 0.65
ACGTcount: A:0.46, C:0.17, G:0.24, T:0.13
Consensus pattern (53 bp):
GAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGC
Found at i:7935261 original size:72 final size:67
Alignment explanation
Indices: 7935198--7935468 Score: 280
Period size: 72 Copynumber: 3.9 Consensus size: 67
7935188 TCATTTCGCA
7935198 TTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTC
1 TTGCGATTTTCATTT-CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTC
7935262 ATTTCG
65 --TT-G
* * * * *
7935268 CATTGCGATTCTCTCGTTGCG-ATTTTC-ATT-TCGCATTGCGATTTTCATTTCCGCATTGCGAT
1 --TTGCGATT-T-TCATTTCGCA-TTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGAT
*
7935330 TCTCTTG
61 TTTCTTG
*
7935337 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGA--TTC-TCTCG--TTGCGATTTTCATTTCCGCATTGCGAT
7935402 TTTCTTG
61 TTTCTTG
* * * **
7935409 TTGGGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTGTAATTTCCGTGTTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGAT
7935469 AGTCAAATGC
Statistics
Matches: 168, Mismatches: 19, Indels: 29
0.78 0.09 0.13
Matches are distributed among these distances:
65 9 0.05
66 3 0.02
67 31 0.18
68 2 0.01
69 5 0.03
70 7 0.04
71 18 0.11
72 83 0.49
73 6 0.04
74 4 0.02
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.46
Consensus pattern (67 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCT
TG
Found at i:7935300 original size:105 final size:109
Alignment explanation
Indices: 7935180--7935449 Score: 425
Period size: 105 Copynumber: 2.6 Consensus size: 109
7935170 AGAATCGCAA
7935180 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
7935245 TTCGCATTGCGATTTTCATTTCGCATTGCGA-TTC-TCT-CG-T
66 TTCGCATTGCGATTTTCATTTCGCATTGCGATTTCATCTCCGAT
*
7935285 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTTGTTGCGATTTTCAT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
*
7935350 TTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCAT
66 TTCGCATTGCGATTTTCATTTCGCATTGCGA-TTTCATCTCCG-AT
*
7935396 TGCGATTTTC--TT-G--TTGGGATTTTCATTT-CGCATTGCGATTCTCTCGTTGCGATT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATT
7935450 GTAATTTCCG
Statistics
Matches: 155, Mismatches: 4, Indels: 12
0.91 0.02 0.07
Matches are distributed among these distances:
105 120 0.77
106 14 0.09
107 3 0.02
108 3 0.02
109 4 0.03
111 11 0.07
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.47
Consensus pattern (109 bp):
TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
TTCGCATTGCGATTTTCATTTCGCATTGCGATTTCATCTCCGAT
Found at i:7935464 original size:53 final size:52
Alignment explanation
Indices: 7935180--7935449 Score: 406
Period size: 53 Copynumber: 5.1 Consensus size: 52
7935170 AGAATCGCAA
7935180 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTT-CGCATTGCGATTCTCTCGT
7935233 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
*
7935285 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTTGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTT-CGCATTGCGATTCTCTCGT
*
7935338 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCAT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TTC-TCT-CG--T
*
7935396 TGCGATTTTC--TT-G--TTGGGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
7935443 TGCGATT
1 TGCGATT
7935450 GTAATTTCCG
Statistics
Matches: 205, Mismatches: 5, Indels: 20
0.89 0.02 0.09
Matches are distributed among these distances:
47 8 0.04
49 2 0.01
50 2 0.01
51 3 0.01
52 62 0.30
53 108 0.53
54 3 0.01
55 3 0.01
56 3 0.01
58 11 0.05
ACGTcount: A:0.13, C:0.22, G:0.18, T:0.47
Consensus pattern (52 bp):
TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
Found at i:7937744 original size:12 final size:12
Alignment explanation
Indices: 7937727--7937751 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7937717 TCTTCGGGGA
7937727 CTTTTTCTTCTT
1 CTTTTTCTTCTT
7937739 CTTTTTCTTCTT
1 CTTTTTCTTCTT
7937751 C
1 C
7937752 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:7937960 original size:24 final size:24
Alignment explanation
Indices: 7937926--7937972 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7937916 CTGAAACATC
7937926 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
7937950 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
7937973 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:7938691 original size:20 final size:20
Alignment explanation
Indices: 7938663--7938891 Score: 244
Period size: 20 Copynumber: 11.4 Consensus size: 20
7938653 AAATTTCAGT
* * *
7938663 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
7938683 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
* *
7938703 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
* **
7938723 GTTGCGATTTACTGATTATC
1 GTTGCGATTTACGGATTCGC
*
7938743 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
7938763 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
7938783 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
7938803 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATTCGC
*
7938823 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
7938843 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCGC
* **
7938863 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCGC
7938883 GTTGCGATT
1 GTTGCGATT
7938892 CTGTAAAATC
Statistics
Matches: 184, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
20 183 0.99
21 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.37
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCGC
Found at i:7938909 original size:21 final size:20
Alignment explanation
Indices: 7938885--7938955 Score: 54
Period size: 21 Copynumber: 3.4 Consensus size: 20
7938875 ATATTCGCGT
7938885 TGCGATTCTGTAAAATCGCAA
1 TGCGATT-TGTAAAATCGCAA
** *
7938906 TGCGAATTTGTACTATCGCAT
1 TGCG-ATTTGTAAAATCGCAA
**
7938927 TGCGA-TTGTCAAGAATCGCGT
1 TGCGATTTGT-AA-AATCGCAA
7938948 TGCGATTT
1 TGCGATTT
7938956 TGGAAACTGG
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
19 4 0.10
20 2 0.05
21 29 0.73
22 5 0.12
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (20 bp):
TGCGATTTGTAAAATCGCAA
Found at i:7952070 original size:4 final size:4
Alignment explanation
Indices: 7952063--7952089 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
7952053 TATATATATA
7952063 TATT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TATT TATT TAT
7952090 ACAAAGAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:7956873 original size:59 final size:59
Alignment explanation
Indices: 7956765--7956876 Score: 163
Period size: 60 Copynumber: 1.9 Consensus size: 59
7956755 CTTTGAATCA
* *
7956765 TATTCAAAATTGGCCCTTAACTTCTAAATATTTCAATTTCATCCTTAAACTATGACCTT
1 TATTCAAAATTGGCCCTTAACGTCTAAACATTTCAATTTCATCCTTAAACTATGACCTT
* * *
7956824 TATTCTAAATTGGTCTTTAAACGTCTAAACATTTCAATTTCATCC-TAAACTAT
1 TATTCAAAATTGGCCCTT-AACGTCTAAACATTTCAATTTCATCCTTAAACTAT
7956877 CGGTAGATGA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
59 23 0.49
60 24 0.51
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.41
Consensus pattern (59 bp):
TATTCAAAATTGGCCCTTAACGTCTAAACATTTCAATTTCATCCTTAAACTATGACCTT
Found at i:7961506 original size:35 final size:35
Alignment explanation
Indices: 7961397--7961535 Score: 145
Period size: 35 Copynumber: 3.9 Consensus size: 35
7961387 AAATATATAT
* * *
7961397 TTTTATTAATGATTACTAAACCCAATATCTACACC
1 TTTTATTAATAAATACTAAACCTAATATCTACACC
* * * ** *
7961432 TTTTATTAATAAATAGTAGTAA-ATCATGCCTACAAC
1 TTTTATTAATAAATACTA--AACCTAATATCTACACC
* * *
7961468 TTTTATTAGTAAAGACTATACCTAATATCTACACC
1 TTTTATTAATAAATACTAAACCTAATATCTACACC
7961503 TTTTATTAATAAATACTAAACCTAATATCTACA
1 TTTTATTAATAAATACTAAACCTAATATCTACA
7961536 AAAAAAGTTA
Statistics
Matches: 80, Mismatches: 21, Indels: 6
0.75 0.20 0.06
Matches are distributed among these distances:
34 1 0.01
35 54 0.68
36 23 0.29
37 2 0.03
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.37
Consensus pattern (35 bp):
TTTTATTAATAAATACTAAACCTAATATCTACACC
Found at i:7963312 original size:9 final size:9
Alignment explanation
Indices: 7963283--7963331 Score: 53
Period size: 9 Copynumber: 5.1 Consensus size: 9
7963273 AATAATATAG
7963283 AAATATAAA
1 AAATATAAA
*
7963292 AACTATTAAAA
1 AAATA-T-AAA
7963303 AAATATAAA
1 AAATATAAA
*
7963312 AACTATAAAA
1 AAATAT-AAA
7963322 AAATATAAA
1 AAATATAAA
7963331 A
1 A
7963332 TGATATTTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 16 0.48
10 10 0.30
11 7 0.21
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (9 bp):
AAATATAAA
Found at i:7963320 original size:19 final size:20
Alignment explanation
Indices: 7963283--7963331 Score: 91
Period size: 19 Copynumber: 2.5 Consensus size: 20
7963273 AATAATATAG
7963283 AAATATAAAAACTATTAAAA
1 AAATATAAAAACTATTAAAA
7963303 AAATATAAAAACTA-TAAAA
1 AAATATAAAAACTATTAAAA
7963322 AAATATAAAA
1 AAATATAAAA
7963332 TGATATTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (20 bp):
AAATATAAAAACTATTAAAA
Found at i:7963323 original size:10 final size:10
Alignment explanation
Indices: 7963283--7963331 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
7963273 AATAATATAG
7963283 AAATAT-AAA
1 AAATATAAAA
*
7963292 AACTATTAAAA
1 AAATA-TAAAA
7963303 AAATAT-AAA
1 AAATATAAAA
*
7963312 AACTATAAAA
1 AAATATAAAA
7963322 AAATATAAAA
1 AAATATAAAA
7963332 TGATATTTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
9 12 0.36
10 14 0.42
11 7 0.21
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (10 bp):
AAATATAAAA
Found at i:7970517 original size:25 final size:25
Alignment explanation
Indices: 7970481--7970528 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
7970471 ATCGTATAAC
*
7970481 ATGGGCATTATTCTTAT-ATTTCAT
1 ATGGGCATTATTCATATCATTTCAT
*
7970505 ATGGTCATGTATTCATATCATTTC
1 ATGGGCAT-TATTCATATCATTTC
7970529 TCTTGTGATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 8 0.40
26 5 0.25
ACGTcount: A:0.25, C:0.15, G:0.12, T:0.48
Consensus pattern (25 bp):
ATGGGCATTATTCATATCATTTCAT
Found at i:7971025 original size:63 final size:65
Alignment explanation
Indices: 7970958--7971119 Score: 190
Period size: 63 Copynumber: 2.6 Consensus size: 65
7970948 ATCCCTTGAC
* *
7970958 GGGTGCATCGATGCACTATC-TATGCATCGATACA-TAAATCCTATTCGATGTTTGCA-TTTAAG
1 GGGTGCATCGATGCACTATCATGTGCATCGATACACT-AATCCTATTCGATGTTTGCATTTTAAA
7971020 G
65 G
* * ** **
7971021 GGGTGCATCGATGCACTA-CTTGTGCATCGATACACTGATGGTATTCGATGTTTTTATTTTAAAG
1 GGGTGCATCGATGCACTATCATGTGCATCGATACACTAATCCTATTCGATGTTTGCATTTTAAAG
* *
7971085 GAGTGCATCGATGCACT-TCATGTGCATCAATACAC
1 GGGTGCATCGATGCACTATCATGTGCATCGATACAC
7971120 CTTGAACAAT
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
62 1 0.01
63 46 0.54
64 38 0.45
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (65 bp):
GGGTGCATCGATGCACTATCATGTGCATCGATACACTAATCCTATTCGATGTTTGCATTTTAAAG
Found at i:7975554 original size:18 final size:18
Alignment explanation
Indices: 7975531--7975575 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
7975521 TTTGGATCTT
7975531 AGATTCTTCGTTGTTTGC
1 AGATTCTTCGTTGTTTGC
7975549 AGATTCTTCGTTGTTTGC
1 AGATTCTTCGTTGTTTGC
7975567 AGATTCTTC
1 AGATTCTTC
7975576 AAATATTGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.13, C:0.18, G:0.20, T:0.49
Consensus pattern (18 bp):
AGATTCTTCGTTGTTTGC
Found at i:7979897 original size:64 final size:65
Alignment explanation
Indices: 7979743--7979904 Score: 190
Period size: 64 Copynumber: 2.5 Consensus size: 65
7979733 TTGTTGAAGG
*
7979743 TGCATCGATGCATAAGGAGTGCATCGATGCA-CTCATTTAAATTAATGAACATCGAATGCCATTA
1 TGCATCGATGCATAAGGAGTGCATCGATGCACCTCATTTAAAATAA-GAACATCGAATGCCATTA
7979807 A
65 A
* * *
7979808 TGCATCGATGCATAAGGAGTACATCGATGCACCTGA-TTAAAATACA-AACATCGAATAG-GATT
1 TGCATCGATGCATAAGGAGTGCATCGATGCACCTCATTTAAAATA-AGAACATCGAAT-GCCATT
*
7979870 TA
64 AA
* *
7979872 TGCACCGATGCAT-GGGTAGTGCATCGATGCACC
1 TGCATCGATGCATAAGG-AGTGCATCGATGCACC
7979905 CATCAAGGGA
Statistics
Matches: 85, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
63 2 0.02
64 41 0.48
65 38 0.45
66 4 0.05
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (65 bp):
TGCATCGATGCATAAGGAGTGCATCGATGCACCTCATTTAAAATAAGAACATCGAATGCCATTAA
Found at i:7980511 original size:18 final size:18
Alignment explanation
Indices: 7980461--7980520 Score: 75
Period size: 18 Copynumber: 3.1 Consensus size: 18
7980451 AGTCCTTCAA
7980461 GACATAGTGGTCCTTCGG
1 GACATAGTGGTCCTTCGG
7980479 GACGTATCCAGTGGTCCTTCGG
1 GAC--AT--AGTGGTCCTTCGG
*
7980501 GACATAGTGGTCATTCGG
1 GACATAGTGGTCCTTCGG
7980519 GA
1 GA
7980521 TAAATACTGA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
18 17 0.46
20 4 0.11
22 16 0.43
ACGTcount: A:0.18, C:0.22, G:0.33, T:0.27
Consensus pattern (18 bp):
GACATAGTGGTCCTTCGG
Found at i:7982423 original size:20 final size:20
Alignment explanation
Indices: 7982331--7982426 Score: 120
Period size: 20 Copynumber: 4.8 Consensus size: 20
7982321 ATATTAGTCG
** *
7982331 TTGCGATAGTCAAATTCGTA
1 TTGCGATAGTCATTTTCGCA
* **
7982351 TCGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
7982371 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
7982391 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
*
7982411 TTACGATAGTCATTTT
1 TTGCGATAGTCATTTT
7982427 TGCGTTGCAA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 69 1.00
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.38
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:7983012 original size:21 final size:21
Alignment explanation
Indices: 7982921--7983025 Score: 86
Period size: 21 Copynumber: 5.0 Consensus size: 21
7982911 GACTCACCTG
* *
7982921 TCATCATTCAAGAGGCCTCCCC
1 TCATCGTTCAAGAGGCC-CCTC
*
7982943 T-ATCGTTCAAGAGGCCCCTA
1 TCATCGTTCAAGAGGCCCCTC
** *
7982963 TCATCCCTCAAGAGTCCCCTC
1 TCATCGTTCAAGAGGCCCCTC
* * * *
7982984 CCACCGTTCAAGAGGCCACTG
1 TCATCGTTCAAGAGGCCCCTC
* *
7983005 TCATCGTTGAAGAGGTCCCTC
1 TCATCGTTCAAGAGGCCCCTC
7983026 CCAACATTCT
Statistics
Matches: 62, Mismatches: 20, Indels: 3
0.73 0.24 0.04
Matches are distributed among these distances:
20 3 0.05
21 58 0.94
22 1 0.02
ACGTcount: A:0.22, C:0.37, G:0.18, T:0.23
Consensus pattern (21 bp):
TCATCGTTCAAGAGGCCCCTC
Found at i:7983018 original size:42 final size:42
Alignment explanation
Indices: 7982946--7983028 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
7982936 CCTCCCCTAT
*
7982946 CGTTCAAGAGGCCCCTATCATCCCTCAAGA-GTCCCCTCCCAC
1 CGTTCAAGAGGCCACTATCATCCCTCAAGAGGT-CCCTCCCAC
* ** *
7982988 CGTTCAAGAGGCCACTGTCATCGTTGAAGAGGTCCCTCCCA
1 CGTTCAAGAGGCCACTATCATCCCTCAAGAGGTCCCTCCCA
7983029 ACATTCTAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 33 0.94
43 2 0.06
ACGTcount: A:0.22, C:0.39, G:0.19, T:0.20
Consensus pattern (42 bp):
CGTTCAAGAGGCCACTATCATCCCTCAAGAGGTCCCTCCCAC
Found at i:7983577 original size:13 final size:13
Alignment explanation
Indices: 7983559--7983590 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
7983549 TTCACTTGAA
7983559 GAATCAACGACAT
1 GAATCAACGACAT
7983572 GAATCAACGACAT
1 GAATCAACGACAT
7983585 GAATCA
1 GAATCA
7983591 TATGTGTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.47, C:0.22, G:0.16, T:0.16
Consensus pattern (13 bp):
GAATCAACGACAT
Found at i:7984440 original size:14 final size:14
Alignment explanation
Indices: 7984421--7984456 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
7984411 ATTGTTTAAT
7984421 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
7984435 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
7984449 TGATTTGT
1 TGATTTGT
7984457 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:7984612 original size:33 final size:33
Alignment explanation
Indices: 7984562--7984657 Score: 111
Period size: 33 Copynumber: 2.8 Consensus size: 33
7984552 AAAACAGACT
* * *
7984562 ATCGCAACGCGGAAATGACTATGGCAACGAGAGA
1 ATCGCAATGC-GAAATGACAATCGCAACGAGAGA
* *
7984596 ATCGCAATGTGAAATGAGAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGACAATCGCAACGAGAGA
* *
7984629 ATCGCAATGCGAAAATAAAAATCGCAACG
1 ATCGCAATGCG-AAATGACAATCGCAACG
7984658 CGAAACTAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
33 30 0.57
34 23 0.43
ACGTcount: A:0.43, C:0.19, G:0.25, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGACAATCGCAACGAGAGA
Found at i:7984653 original size:20 final size:20
Alignment explanation
Indices: 7984628--7984667 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7984618 GCAACGAGAG
*
7984628 AATCGCAATGCGAAAATAAA
1 AATCGCAACGCGAAAATAAA
*
7984648 AATCGCAACGCGAAACTAAA
1 AATCGCAACGCGAAAATAAA
7984668 TTCGTGTTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.20, G:0.15, T:0.12
Consensus pattern (20 bp):
AATCGCAACGCGAAAATAAA
Found at i:7984780 original size:53 final size:53
Alignment explanation
Indices: 7984668--7984786 Score: 168
Period size: 52 Copynumber: 2.2 Consensus size: 53
7984658 CGAAACTAAA
* **
7984668 TTCGTGTTGCGATTTTCATTTTCGAATTGTGATTCACTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCATTTTCGAATTGTGATTCACTCGTTGCGATAGTCAT
* * *
7984721 TTCGCGTTGCGATTTTCA-TTTCGCATTGTGATTCTCTCGTTGTGATAGTCAT
1 TTCGCGTTGCGATTTTCATTTTCGAATTGTGATTCACTCGTTGCGATAGTCAT
7984773 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
7984787 AGTCAATTCC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
52 31 0.53
53 28 0.47
ACGTcount: A:0.13, C:0.19, G:0.21, T:0.46
Consensus pattern (53 bp):
TTCGCGTTGCGATTTTCATTTTCGAATTGTGATTCACTCGTTGCGATAGTCAT
Found at i:7984787 original size:20 final size:20
Alignment explanation
Indices: 7984758--7984846 Score: 135
Period size: 20 Copynumber: 4.5 Consensus size: 20
7984748 GTGATTCTCT
*
7984758 CGTTGTGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
*
7984778 CGTTGCGATAGTCAATTCCG
1 CGTTGCGATAGTCATTTCCG
7984798 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
*
7984818 TGTTGCGATAGTCATATT-CG
1 CGTTGCGATAGTCAT-TTCCG
7984838 CGTTGCGAT
1 CGTTGCGAT
7984847 TTCCACGTTG
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.17, C:0.21, G:0.26, T:0.36
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:7987297 original size:24 final size:24
Alignment explanation
Indices: 7987270--7987323 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
7987260 CTGAAAAATC
*
7987270 ATCAAAATCTGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
7987294 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
7987318 ATCAAA
1 ATCAAA
7987324 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:7987337 original size:24 final size:24
Alignment explanation
Indices: 7987286--7987337 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
7987276 ATCTGAGTAT
** *
7987286 TGACCAAGATCAAAGTCCGGGTAT
1 TGACCAAGATCAAAGTCCGAATAC
* *
7987310 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTCCGAATAC
7987334 TGAC
1 TGAC
7987338 TAGTACTCAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (24 bp):
TGACCAAGATCAAAGTCCGAATAC
Found at i:7988190 original size:20 final size:20
Alignment explanation
Indices: 7988165--7988271 Score: 142
Period size: 20 Copynumber: 5.3 Consensus size: 20
7988155 AAATTCAGTA
7988165 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCTCG
*
7988185 TTGCGATAGTCATAATCTCG
1 TTGCGATAGTCAGAATCTCG
*
7988205 TTGCGATAGTCATAATCTCG
1 TTGCGATAGTCAGAATCTCG
* * *
7988225 TTGCGATAATCAGATTCGCG
1 TTGCGATAGTCAGAATCTCG
* * *
7988245 TTGCGATAATCAGATTCGCG
1 TTGCGATAGTCAGAATCTCG
7988265 TTGCGAT
1 TTGCGAT
7988272 TTACGTATTC
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 82 1.00
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCTCG
Found at i:7989145 original size:92 final size:91
Alignment explanation
Indices: 7989033--7989204 Score: 229
Period size: 92 Copynumber: 1.9 Consensus size: 91
7989023 GGTTGAATTA
** * *
7989033 ATTGATTATTTGTTTTTTTGAATGTAAACTCTGATTTTCTAATAAATATTTAAAAAT-AGCTGTT
1 ATTGATTATTTGGCTTTTTGAATGTAAACTCTGAGTTTC-AATAAATATTT-AAAATCAGCTGAT
*
7989097 GTTTACTGATTGGAATAGTATAGGTTCC
64 GTTTACTGATTAGAATAGTATAGGTTCC
* * * *
7989125 ATTGATTATTTGGCTTTTTGATTGTAAATTCTGAGTTTCAATTAATGTTTAAAATCAGCTGATGT
1 ATTGATTATTTGGCTTTTTGAATGTAAACTCTGAGTTTCAATAAATATTTAAAATCAGCTGATGT
*
7989190 TTGCTGATTAGAATA
66 TTACTGATTAGAATA
7989205 TTATTGTTCT
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
90 5 0.07
91 30 0.43
92 34 0.49
ACGTcount: A:0.30, C:0.08, G:0.16, T:0.47
Consensus pattern (91 bp):
ATTGATTATTTGGCTTTTTGAATGTAAACTCTGAGTTTCAATAAATATTTAAAATCAGCTGATGT
TTACTGATTAGAATAGTATAGGTTCC
Found at i:7990970 original size:13 final size:13
Alignment explanation
Indices: 7990935--7990971 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
7990925 AAAGAACTTT
7990935 TCCAACTGCACCC
1 TCCAACTGCACCC
**
7990948 TCCAGTTGCACCC
1 TCCAACTGCACCC
7990961 TCCAACTGCAC
1 TCCAACTGCAC
7990972 TAGGATTTGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.22, C:0.49, G:0.11, T:0.19
Consensus pattern (13 bp):
TCCAACTGCACCC
Found at i:7996230 original size:23 final size:23
Alignment explanation
Indices: 7996166--7996230 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
7996156 CTTATATGAT
* *
7996166 ACTTCGGTTCATTTCTACGCGGC
1 ACTTAGGTGCATTTCTACGCGGC
* *
7996189 AC-TACGGTGCAATTCTACGTGGC
1 ACTTA-GGTGCATTTCTACGCGGC
*
7996212 ACTTAGGTGCATTTATACG
1 ACTTAGGTGCATTTCTACG
7996231 AGCTGTGGTG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
22 1 0.03
23 31 0.91
24 2 0.06
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (23 bp):
ACTTAGGTGCATTTCTACGCGGC
Found at i:8005613 original size:21 final size:21
Alignment explanation
Indices: 8005588--8005633 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8005578 TTTAAAAGAA
*
8005588 TTTAGTAATTTA-ATTTTTATT
1 TTTAGTAATTTATATTTGT-TT
*
8005609 TTTAGTATTTTATATTTGTTT
1 TTTAGTAATTTATATTTGTTT
8005630 TTTA
1 TTTA
8005634 ATATTTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.70
Consensus pattern (21 bp):
TTTAGTAATTTATATTTGTTT
Found at i:8005630 original size:20 final size:21
Alignment explanation
Indices: 8005588--8005631 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
8005578 TTTAAAAGAA
*
8005588 TTTAGTAATTTAATTTTTATT
1 TTTAGTAATTTAATATTTATT
* *
8005609 TTTAGT-ATTTTATATTTGTT
1 TTTAGTAATTTAATATTTATT
8005629 TTT
1 TTT
8005632 TAATATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (21 bp):
TTTAGTAATTTAATATTTATT
Found at i:8005641 original size:22 final size:21
Alignment explanation
Indices: 8005607--8005647 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
8005597 TTAATTTTTA
* *
8005607 TTTTTAGTATTTTATATTTGT
1 TTTTTAATATTTTAAATTTGT
8005628 TTTTTAATATTTTTAAATTT
1 TTTTTAATA-TTTTAAATTT
8005648 TAAATATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (21 bp):
TTTTTAATATTTTAAATTTGT
Found at i:8011438 original size:2 final size:2
Alignment explanation
Indices: 8011385--8011418 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8011375 TTAACTTTAG
8011385 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8011419 GAAATCCCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8026051 original size:13 final size:13
Alignment explanation
Indices: 8026033--8026059 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8026023 CCCGACCCGA
8026033 ACCCGACCCGTTG
1 ACCCGACCCGTTG
8026046 ACCCGACCCGTTG
1 ACCCGACCCGTTG
8026059 A
1 A
8026060 TCGTTGACCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.44, G:0.22, T:0.15
Consensus pattern (13 bp):
ACCCGACCCGTTG
Found at i:8026448 original size:38 final size:38
Alignment explanation
Indices: 8026396--8026472 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
8026386 GTTTTTCGCA
* *
8026396 AATAAGCTCTGTTTCTGATATAATTTATGTTAATATGT
1 AATAAGCTCCGTTTCTAATATAATTTATGTTAATATGT
*
8026434 AATAAGCTCCGTTTCTAATATAATTTATGTTGATATGT
1 AATAAGCTCCGTTTCTAATATAATTTATGTTAATATGT
8026472 A
1 A
8026473 TCTGAGGAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.32, C:0.09, G:0.13, T:0.45
Consensus pattern (38 bp):
AATAAGCTCCGTTTCTAATATAATTTATGTTAATATGT
Found at i:8028551 original size:24 final size:24
Alignment explanation
Indices: 8028522--8028599 Score: 88
Period size: 24 Copynumber: 3.2 Consensus size: 24
8028512 AATTATTTTA
8028522 TCTGATTTCTGACTTGAATTATGT
1 TCTGATTTCTGACTTGAATTATGT
* *
8028546 TCTGA-TACATGACCTGAATTATGT
1 TCTGATTTC-TGACTTGAATTATGT
* *
8028570 TCTGATTTCTGA-TCTGGATTCTGT
1 TCTGATTTCTGACT-TGAATTATGT
8028594 TCTGAT
1 TCTGAT
8028600 ATATGTTCTG
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
23 2 0.04
24 41 0.91
25 2 0.04
ACGTcount: A:0.21, C:0.15, G:0.18, T:0.46
Consensus pattern (24 bp):
TCTGATTTCTGACTTGAATTATGT
Found at i:8028574 original size:12 final size:12
Alignment explanation
Indices: 8028536--8028628 Score: 55
Period size: 12 Copynumber: 7.8 Consensus size: 12
8028526 ATTTCTGACT
8028536 TGAATTATGTTC
1 TGAATTATGTTC
* **
8028548 TG-ATACATGACC
1 TGAAT-TATGTTC
8028560 TGAATTATGTTC
1 TGAATTATGTTC
* * *
8028572 TGATTTCTGATC
1 TGAATTATGTTC
* *
8028584 TGGATTCTGTTC
1 TGAATTATGTTC
8028596 TG-ATATATGTTC
1 TGAAT-TATGTTC
* *
8028608 TGAATTCTGTTT
1 TGAATTATGTTC
*
8028620 TGATTTATG
1 TGAATTATG
8028629 ATATCTCCGT
Statistics
Matches: 60, Mismatches: 17, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
11 4 0.07
12 52 0.87
13 4 0.07
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.48
Consensus pattern (12 bp):
TGAATTATGTTC
Found at i:8028575 original size:48 final size:48
Alignment explanation
Indices: 8028522--8028630 Score: 130
Period size: 48 Copynumber: 2.3 Consensus size: 48
8028512 AATTATTTTA
8028522 TCTGATTTCTGA-CTTGAATTATGTTCTGATACATGACCTGAATTATGT
1 TCTGATTTCTGATC-TGAATTATGTTCTGATACATGACCTGAATTATGT
* * * ** *
8028570 TCTGATTTCTGATCTGGATTCTGTTCTGATATATGTTCTGAATTCTGT
1 TCTGATTTCTGATCTGAATTATGTTCTGATACATGACCTGAATTATGT
* *
8028618 TTTGATTTATGAT
1 TCTGATTTCTGAT
8028631 ATCTCCGTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
48 51 0.98
49 1 0.02
ACGTcount: A:0.21, C:0.13, G:0.17, T:0.49
Consensus pattern (48 bp):
TCTGATTTCTGATCTGAATTATGTTCTGATACATGACCTGAATTATGT
Found at i:8028609 original size:24 final size:24
Alignment explanation
Indices: 8028536--8028630 Score: 100
Period size: 24 Copynumber: 4.0 Consensus size: 24
8028526 ATTTCTGACT
* * *
8028536 TGAATTATGTTCTGATACATGACC
1 TGAATTCTGTTCTGATATATGATC
* * *
8028560 TGAATTATGTTCTGATTTCTGATC
1 TGAATTCTGTTCTGATATATGATC
* *
8028584 TGGATTCTGTTCTGATATATGTTC
1 TGAATTCTGTTCTGATATATGATC
* *
8028608 TGAATTCTGTTTTGATTTATGAT
1 TGAATTCTGTTCTGATATATGAT
8028631 ATCTCCGTTT
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 58 1.00
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.48
Consensus pattern (24 bp):
TGAATTCTGTTCTGATATATGATC
Found at i:8031453 original size:25 final size:26
Alignment explanation
Indices: 8031407--8031488 Score: 91
Period size: 25 Copynumber: 3.3 Consensus size: 26
8031397 TCGTAGATAT
*
8031407 ATTTGCA-TTCG-GAGTGCCTCGTAG
1 ATTTGCACTTCGAAAGTGCCTCGTAG
*
8031431 ATTTGCACTT-GAAAGTGCGTCGTAG
1 ATTTGCACTTCGAAAGTGCCTCGTAG
* * *
8031456 AATTGCA-TTCGAAAATGCCTCGTGG
1 ATTTGCACTTCGAAAGTGCCTCGTAG
8031481 ATTTGCAC
1 ATTTGCAC
8031489 CATAGATGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
24 10 0.21
25 37 0.79
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.32
Consensus pattern (26 bp):
ATTTGCACTTCGAAAGTGCCTCGTAG
Found at i:8034545 original size:206 final size:205
Alignment explanation
Indices: 8034175--8034583 Score: 561
Period size: 206 Copynumber: 2.0 Consensus size: 205
8034165 ATATCAGTCG
* * * *
8034175 TTGTCAGTGATGGTTGTATTGGCAGCTACTAATTTATAATAATGCTTTCAGGTTTTTTAGGAGGA
1 TTGTCAGTGATGGTTGTATTAGCAGCTAATAACTTAGAATAATGCTTTCAGGTTTTTTAGGAGGA
*
8034240 ATACTTTAGCTGTGACGTTAGCTTTTCTTAACGATAGTTGACTGAAACGACGACAATGAAAGTAA
66 ATA-TTTAGCTGTGACGTTAGCTTTTATTAACGATAGTTGACTGAAACGACGACAATGAAAGTAA
* **
8034305 ATTAAAATTTTAGTGATTGTATTATATATTTTAAAAATTTAGTGATCGAAATATAAACACTCTAA
130 ATTAAAAGTTTAGTGATTGTATTATATATTTTAAAAATCCAGTGATCGAAATATAAACACTCTAA
8034370 AAGTTCAATCA
195 AAGTTCAATCA
* * *
8034381 TTGTCGGTGATGGTTGTATTAGCATCTAATAACTTAGAATAA-GACTTTCGGGTTTTTTTAGGAG
1 TTGTCAGTGATGGTTGTATTAGCAGCTAATAACTTAGAATAATG-CTTTCAGG-TTTTTTAGGA-
* * * ** * *
8034445 GGAAT-TTTAGTTGTGACGTTAGTTTTTATTAACGATAGTTGACTGGAGTGATGATAATGAAAGT
63 GGAATATTTAGCTGTGACGTTAGCTTTTATTAACGATAGTTGACTGAAACGACGACAATGAAAGT
* * * * *
8034509 AAATTAAAAGTTTATTGATTGTATTGTATGTTTTAAAAATCCAGTGGTCGAAATATAAATACTCT
128 AAATTAAAAGTTTAGTGATTGTATTATATATTTTAAAAATCCAGTGATCGAAATATAAACACTCT
8034574 AAAAGTTCAA
193 AAAAGTTCAA
8034584 AGACCATTTA
Statistics
Matches: 177, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
205 1 0.01
206 161 0.91
207 10 0.06
208 5 0.03
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.38
Consensus pattern (205 bp):
TTGTCAGTGATGGTTGTATTAGCAGCTAATAACTTAGAATAATGCTTTCAGGTTTTTTAGGAGGA
ATATTTAGCTGTGACGTTAGCTTTTATTAACGATAGTTGACTGAAACGACGACAATGAAAGTAAA
TTAAAAGTTTAGTGATTGTATTATATATTTTAAAAATCCAGTGATCGAAATATAAACACTCTAAA
AGTTCAATCA
Found at i:8045361 original size:2 final size:2
Alignment explanation
Indices: 8045354--8045402 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
8045344 AAGGCGAATG
8045354 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8045396 AT AT AT A
1 AT AT AT A
8045403 CAAACGAGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8059410 original size:23 final size:23
Alignment explanation
Indices: 8059383--8059440 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
8059373 ACTTGTACCT
*
8059383 CTGAATGATTCAGTAAAACAGTG
1 CTGAATGATTCAGCAAAACAGTG
*
8059406 TTGAATGATTCAGCAAAACAGTG
1 CTGAATGATTCAGCAAAACAGTG
8059429 CTGAATGATTCA
1 CTGAATGATTCA
8059441 ACACAGAAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (23 bp):
CTGAATGATTCAGCAAAACAGTG
Found at i:8059467 original size:27 final size:27
Alignment explanation
Indices: 8059429--8059492 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
8059419 CAAAACAGTG
8059429 CTGAATGATTCAACACAGAAGTACATT
1 CTGAATGATTCAACACAGAAGTACATT
8059456 CTGAATGATTCAACACAGAAGTACATT
1 CTGAATGATTCAACACAGAAGTACATT
*
8059483 TTGAATGATT
1 CTGAATGATT
8059493 AAGAACCATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (27 bp):
CTGAATGATTCAACACAGAAGTACATT
Found at i:8059590 original size:16 final size:16
Alignment explanation
Indices: 8059547--8059591 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
8059537 ACAGAGACTC
**
8059547 TGAATCATTCAATATT
1 TGAATCATTCAGCATT
8059563 TGAATCATTCAGCATT
1 TGAATCATTCAGCATT
8059579 TGAATCATTCAGC
1 TGAATCATTCAGC
8059592 GTTTAATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (16 bp):
TGAATCATTCAGCATT
Found at i:8068368 original size:22 final size:23
Alignment explanation
Indices: 8068337--8068383 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
8068327 TAATCGCGAG
8068337 TTTAGAAGATACGA-TTCTGGGC
1 TTTAGAAGATACGATTTCTGGGC
* * *
8068359 TTTAGCAGATATGATTTTTGGGC
1 TTTAGAAGATACGATTTCTGGGC
8068382 TT
1 TT
8068384 GTTTAGGGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.23, C:0.11, G:0.26, T:0.40
Consensus pattern (23 bp):
TTTAGAAGATACGATTTCTGGGC
Found at i:8071916 original size:27 final size:27
Alignment explanation
Indices: 8071886--8071975 Score: 74
Period size: 27 Copynumber: 3.1 Consensus size: 27
8071876 TAGAGATGAT
8071886 GTTAAAGCTATTTAACTGGTACAAAAG
1 GTTAAAGCTATTTAACTGGTACAAAAG
* * *
8071913 GTTAAACCTACTTTAACTATGAGTATTGAGAAG
1 GTTAAAGCTA-TTTAAC--TG-GTA--CAAAAG
**
8071946 AAT-AAGCTATTTAACTGGTACAAAAG
1 GTTAAAGCTATTTAACTGGTACAAAAG
8071972 GTTA
1 GTTA
8071976 CTCCAGTAAC
Statistics
Matches: 46, Mismatches: 10, Indels: 14
0.66 0.14 0.20
Matches are distributed among these distances:
26 5 0.11
27 9 0.20
28 9 0.20
29 2 0.04
30 2 0.04
31 9 0.20
32 5 0.11
33 5 0.11
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (27 bp):
GTTAAAGCTATTTAACTGGTACAAAAG
Found at i:8072584 original size:2 final size:2
Alignment explanation
Indices: 8072577--8072601 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8072567 TCTTTTTATT
8072577 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8072602 GATCGACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8074649 original size:22 final size:21
Alignment explanation
Indices: 8074606--8074651 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
8074596 TTTAGTGTTG
8074606 AAATTTACAATTTATCCAAAT
1 AAATTTACAATTTATCCAAAT
*
8074627 AAATATTACACATTTA-CCGAAT
1 AAAT-TTACA-ATTTATCCAAAT
8074649 AAA
1 AAA
8074652 ACTCAACTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 4 0.18
22 13 0.59
23 5 0.23
ACGTcount: A:0.50, C:0.15, G:0.02, T:0.33
Consensus pattern (21 bp):
AAATTTACAATTTATCCAAAT
Found at i:8077008 original size:29 final size:30
Alignment explanation
Indices: 8076975--8077033 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
8076965 GATATGATTT
*
8076975 TGAAATAAA-TGAAAGTTTAGGTACTAAAA
1 TGAAATAAACTGAAAGTTTAAGTACTAAAA
*
8077004 TGAAATAAAGCTGATAGTTTAAGTACTAAA
1 TGAAATAAA-CTGAAAGTTTAAGTACTAAA
8077034 CGTGTAGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 9 0.35
31 17 0.65
ACGTcount: A:0.49, C:0.05, G:0.17, T:0.29
Consensus pattern (30 bp):
TGAAATAAACTGAAAGTTTAAGTACTAAAA
Found at i:8083320 original size:2 final size:2
Alignment explanation
Indices: 8083313--8083341 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8083303 TTTTATGTTT
8083313 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8083342 TTTTGGGTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8085343 original size:21 final size:21
Alignment explanation
Indices: 8085304--8085343 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8085294 ATACAATTTT
**
8085304 TGTTTATAATATTTTTTATTA
1 TGTTTATAATATTAATTATTA
8085325 TGTTTATAATATTAATTAT
1 TGTTTATAATATTAATTAT
8085344 AATTCAAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (21 bp):
TGTTTATAATATTAATTATTA
Found at i:8097012 original size:2 final size:2
Alignment explanation
Indices: 8097005--8097035 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8096995 TTCATACGTG
8097005 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8097036 TGGAGTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8104328 original size:14 final size:14
Alignment explanation
Indices: 8104295--8104334 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
8104285 ATTTGGGCCT
*
8104295 TTTTAAATA-TATA
1 TTTTAAATATTTTA
*
8104308 ATTTAAATATTTTA
1 TTTTAAATATTTTA
8104322 TTTTAAATATTTT
1 TTTTAAATATTTT
8104335 TAAAATTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
13 8 0.35
14 15 0.65
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTAAATATTTTA
Found at i:8111664 original size:21 final size:23
Alignment explanation
Indices: 8111622--8111666 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8111612 TATGCCTTTA
8111622 TGATACGTGTTTCTCTGTTTTTG
1 TGATACGTGTTTCTCTGTTTTTG
*
8111645 TGATACGTTTTTCGTCT-TTTTT
1 TGATACGTGTTTC-TCTGTTTTT
8111667 CTTGTTCATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.09, C:0.13, G:0.18, T:0.60
Consensus pattern (23 bp):
TGATACGTGTTTCTCTGTTTTTG
Found at i:8120523 original size:28 final size:27
Alignment explanation
Indices: 8120481--8120540 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 27
8120471 AAGTATTTAA
* *
8120481 TTTTTGGGTGTAATTAGATACCTATTTT
1 TTTTTGGGTGCAATTAGAT-CATATTTT
* *
8120509 TTTTTTGGTGCAATTAGATCATGTTTT
1 TTTTTGGGTGCAATTAGATCATATTTT
8120536 TTTTT
1 TTTTT
8120541 AAATAACACA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 11 0.39
28 17 0.61
ACGTcount: A:0.18, C:0.07, G:0.17, T:0.58
Consensus pattern (27 bp):
TTTTTGGGTGCAATTAGATCATATTTT
Found at i:8127010 original size:144 final size:144
Alignment explanation
Indices: 8126750--8127040 Score: 546
Period size: 144 Copynumber: 2.0 Consensus size: 144
8126740 AATGTCTTGG
* *
8126750 TATTTCTGGCGCAGAAAAAGGTAAAAAGATATTTTCACAACTTGACAGCTGTCTGTCAAGCACGT
1 TATTTCTGGCGCAGAAAAAGGTAAAAAGATATTTTCACAACTTGACAACTGTCTATCAAGCACGT
8126815 GTTGTTGTTGCTAACCGCCTGAATGGGTCCAATGCCACCTATAGAGTAAAACTTCAGGCATAAGA
66 GTTGTTGTTGCTAACCGCCTGAATGGGTCCAATGCCACCTATAGAGTAAAACTTCAGGCATAAGA
8126880 AATACATTTGGAGA
131 AATACATTTGGAGA
*
8126894 TATTTCTGGCGCAGAAAAAGGTAAAAAGATATTTTCACAAGTTGACAACTGTCTATCAAGCACGT
1 TATTTCTGGCGCAGAAAAAGGTAAAAAGATATTTTCACAACTTGACAACTGTCTATCAAGCACGT
*
8126959 GTTGTTGTTGCTAACCGCCTGAATGGGTCCAATGCCACCTATGGAGTAAAACTTCAGGCATAAGA
66 GTTGTTGTTGCTAACCGCCTGAATGGGTCCAATGCCACCTATAGAGTAAAACTTCAGGCATAAGA
8127024 AATACATTTGGAGA
131 AATACATTTGGAGA
8127038 TAT
1 TAT
8127041 GATGGGTATT
Statistics
Matches: 143, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
144 143 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (144 bp):
TATTTCTGGCGCAGAAAAAGGTAAAAAGATATTTTCACAACTTGACAACTGTCTATCAAGCACGT
GTTGTTGTTGCTAACCGCCTGAATGGGTCCAATGCCACCTATAGAGTAAAACTTCAGGCATAAGA
AATACATTTGGAGA
Found at i:8129297 original size:16 final size:16
Alignment explanation
Indices: 8129276--8129309 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
8129266 TTACTATTCA
*
8129276 CGTGAATAGTGAATTT
1 CGTGAATAGTGAAATT
8129292 CGTGAATAGTGAAATT
1 CGTGAATAGTGAAATT
8129308 CG
1 CG
8129310 GTCGGCGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.09, G:0.26, T:0.32
Consensus pattern (16 bp):
CGTGAATAGTGAAATT
Found at i:8130077 original size:15 final size:16
Alignment explanation
Indices: 8130059--8130091 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8130049 GTGGCAGATC
8130059 AAAATCCAG-ACGGGA
1 AAAATCCAGAACGGGA
*
8130074 AAAATCTAGAACGGGA
1 AAAATCCAGAACGGGA
8130090 AA
1 AA
8130092 GAAAGATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.52, C:0.15, G:0.24, T:0.09
Consensus pattern (16 bp):
AAAATCCAGAACGGGA
Found at i:8137403 original size:3 final size:3
Alignment explanation
Indices: 8137390--8137420 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
8137380 TTAGAAAGTA
8137390 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8137421 ATAAACCGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:8137739 original size:68 final size:68
Alignment explanation
Indices: 8137627--8137764 Score: 240
Period size: 68 Copynumber: 2.0 Consensus size: 68
8137617 AAGAAATAAC
8137627 GAGGGGCGGATGGTAGTCACCTGAAACAATTTAAACTGTAATTTGGTGAAATGCACTAATATCAC
1 GAGGGGCGGATGGTAGTCACCTGAAACAATTTAAACTGTAATTTGGTGAAATGCACTAATATCAC
8137692 ACA
66 ACA
* * * *
8137695 GAGGGGCTGATGGTAGTCGCCTGAAACAATTTAAATTGTGATTTGGTGAAATGCACTAATATCAC
1 GAGGGGCGGATGGTAGTCACCTGAAACAATTTAAACTGTAATTTGGTGAAATGCACTAATATCAC
8137760 ACA
66 ACA
8137763 GA
1 GA
8137765 TTCGAGTGCG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (68 bp):
GAGGGGCGGATGGTAGTCACCTGAAACAATTTAAACTGTAATTTGGTGAAATGCACTAATATCAC
ACA
Found at i:8139472 original size:12 final size:12
Alignment explanation
Indices: 8139455--8139479 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8139445 CAGATTCGTG
8139455 TTGGATAGATTT
1 TTGGATAGATTT
8139467 TTGGATAGATTT
1 TTGGATAGATTT
8139479 T
1 T
8139480 CCATCTGTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (12 bp):
TTGGATAGATTT
Found at i:8143785 original size:60 final size:61
Alignment explanation
Indices: 8143714--8143827 Score: 160
Period size: 60 Copynumber: 1.9 Consensus size: 61
8143704 AATTGCAACA
** * *
8143714 TATCCCCAAACTATGACTCTTATTAC-AAGTTGGT-CCCTAAACTTTTAAACATTTTAATTT
1 TATCCCCAAACTATGACTCCCATT-CTAAATTGGTCCCCCAAACTTTTAAACATTTTAATTT
*
8143774 TATCCCTAAACTATGACTCCCATTCTAAATTGGTCCCCCAAACTTTTAAACATT
1 TATCCCCAAACTATGACTCCCATTCTAAATTGGTCCCCCAAACTTTTAAACATT
8143828 CCAAATTCAC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
59 1 0.02
60 28 0.60
61 18 0.38
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (61 bp):
TATCCCCAAACTATGACTCCCATTCTAAATTGGTCCCCCAAACTTTTAAACATTTTAATTT
Found at i:8143850 original size:61 final size:61
Alignment explanation
Indices: 8143743--8143892 Score: 153
Period size: 61 Copynumber: 2.5 Consensus size: 61
8143733 TTATTACAAG
* ** * *
8143743 TTGGT-CCCTAAACTTTTAAACATTTTAATTTTATCCCTAAACTATG-ACTCCCATTCTAAA
1 TTGGTCCCCCAAACTTTTAAACATTCCAAATTCATCCCTAAACTATGAAC-CCCATTCTAAA
* **
8143803 TTGGTCCCCCAAACTTTTAAACATTCCAAATTCA-CCCTCAAATTATGAACCTTATTCTAAA
1 TTGGTCCCCCAAACTTTTAAACATTCCAAATTCATCCCT-AAACTATGAACCCCATTCTAAA
** **
8143864 TTAATCCCCCAAACTTTTGTACATTCCAA
1 TTGGTCCCCCAAACTTTTAAACATTCCAA
8143893 TAATATCCCC
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
60 9 0.12
61 64 0.85
62 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.36
Consensus pattern (61 bp):
TTGGTCCCCCAAACTTTTAAACATTCCAAATTCATCCCTAAACTATGAACCCCATTCTAAA
Found at i:8147669 original size:38 final size:38
Alignment explanation
Indices: 8147595--8147674 Score: 144
Period size: 38 Copynumber: 2.1 Consensus size: 38
8147585 TATTATAAAG
*
8147595 TATTTTTATTTTGATTGAGTCATTCTTATATCATATTA
1 TATTTTTATTTTGATTGAGCCATTCTTATATCATATTA
8147633 TATTTTTATTTTGATTGAGCCATTCTTATATCATATTA
1 TATTTTTATTTTGATTGAGCCATTCTTATATCATATTA
8147671 -ATTT
1 TATTT
8147675 ATTGATCTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
37 4 0.10
38 37 0.90
ACGTcount: A:0.26, C:0.09, G:0.07, T:0.57
Consensus pattern (38 bp):
TATTTTTATTTTGATTGAGCCATTCTTATATCATATTA
Found at i:8151883 original size:22 final size:22
Alignment explanation
Indices: 8151855--8151914 Score: 93
Period size: 22 Copynumber: 2.7 Consensus size: 22
8151845 AGGGTACGAA
*
8151855 GTCCTTCGGGACATATACAGAG
1 GTCCTTCGGGACAAATACAGAG
*
8151877 GTCCTTCGGGACAAATACATAG
1 GTCCTTCGGGACAAATACAGAG
*
8151899 GTCATTCGGGACAAAT
1 GTCCTTCGGGACAAAT
8151915 TTCATATGCC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (22 bp):
GTCCTTCGGGACAAATACAGAG
Found at i:8151930 original size:23 final size:23
Alignment explanation
Indices: 8151882--8151951 Score: 97
Period size: 23 Copynumber: 3.1 Consensus size: 23
8151872 CAGAGGTCCT
* * * *
8151882 TCGGGACAAA-TACATAGGTCAT
1 TCGGGACAAATTTCATATGCCAC
8151904 TCGGGACAAATTTCATATGCCAC
1 TCGGGACAAATTTCATATGCCAC
8151927 TCGGGACAAATTTCATATGCCAC
1 TCGGGACAAATTTCATATGCCAC
8151950 TC
1 TC
8151952 AGTGGGACTT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
22 10 0.23
23 33 0.77
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (23 bp):
TCGGGACAAATTTCATATGCCAC
Found at i:8152597 original size:22 final size:22
Alignment explanation
Indices: 8152567--8152632 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
8152557 TAACATTCGG
*
8152567 TACTATTCACGGTATTGTTCAT
1 TACTGTTCACGGTATTGTTCAT
* * *
8152589 TACTGTTCATGGTACTGTACAT
1 TACTGTTCACGGTATTGTTCAT
* **
8152611 TATTGTTCACAATATTGTTCAT
1 TACTGTTCACGGTATTGTTCAT
8152633 ATCGTATAAT
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.24, C:0.17, G:0.14, T:0.45
Consensus pattern (22 bp):
TACTGTTCACGGTATTGTTCAT
Found at i:8158940 original size:16 final size:16
Alignment explanation
Indices: 8158919--8159004 Score: 54
Period size: 16 Copynumber: 5.6 Consensus size: 16
8158909 ACGAATCACT
*
8158919 TAATAAATTATATCTA
1 TAATAAATTATATATA
8158935 TAAT-AATTATATATA
1 TAATAAATTATATATA
* * *
8158950 TGAT--ATT-TTTTTA
1 TAATAAATTATATATA
* * * * *
8158963 AAATAATTTTTTTCTA
1 TAATAAATTATATATA
8158979 TAATAAATTATATATA
1 TAATAAATTATATATA
*
8158995 TAACAAATTA
1 TAATAAATTA
8159005 ATTTAAAATA
Statistics
Matches: 53, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
13 6 0.11
14 3 0.06
15 15 0.28
16 29 0.55
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (16 bp):
TAATAAATTATATATA
Found at i:8166199 original size:18 final size:18
Alignment explanation
Indices: 8166176--8166225 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
8166166 CACCAAGTAC
* *
8166176 GGATCCACCTGCAACTAT
1 GGATCCACCTACAACTAA
*
8166194 GGATCCCCCTACAACTAA
1 GGATCCACCTACAACTAA
*
8166212 GGATCCGCCTACAA
1 GGATCCACCTACAA
8166226 GTACCGAACC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.30, C:0.36, G:0.16, T:0.18
Consensus pattern (18 bp):
GGATCCACCTACAACTAA
Found at i:8177950 original size:20 final size:19
Alignment explanation
Indices: 8177912--8177950 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
8177902 TTATCACACC
*
8177912 AAATTTTCTCAAATTCTCT
1 AAATTTTCTCAAATACTCT
*
8177931 AAATTTATCTTAAATACTCT
1 AAATTT-TCTCAAATACTCT
8177951 CTTTTTAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (19 bp):
AAATTTTCTCAAATACTCT
Found at i:8180788 original size:31 final size:31
Alignment explanation
Indices: 8180750--8180934 Score: 336
Period size: 31 Copynumber: 6.0 Consensus size: 31
8180740 CCCGAAGGAC
* *
8180750 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
8180781 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8180812 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8180843 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8180874 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8180905 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
8180935 CCCTCGACCC
Statistics
Matches: 151, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
31 150 0.99
32 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:8185164 original size:31 final size:31
Alignment explanation
Indices: 8185126--8185308 Score: 318
Period size: 31 Copynumber: 6.0 Consensus size: 31
8185116 CCCGAAGGAC
* *
8185126 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
8185157 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8185188 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8185219 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8185250 CAGTCC--ATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
8185279 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
8185309 CCCTCGACCC
Statistics
Matches: 147, Mismatches: 2, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
29 29 0.20
31 117 0.80
32 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:8185289 original size:91 final size:92
Alignment explanation
Indices: 8185126--8185308 Score: 316
Period size: 91 Copynumber: 2.0 Consensus size: 92
8185116 CCCGAAGGAC
* *
8185126 CAGTCCATAGATTCCGAAGAACCTAGGTAAACAGTCCATATGTCCCGAAGAACATAGGTAAACAG
1 CAGTCCATAGATCCCGAAGAACATAGGTAAACAGTCCA-ATGTCCCGAAGAACATAGGTAAACAG
8185191 TCCATATGTCCCGAAGAACATAGGTAAA
65 TCCATATGTCCCGAAGAACATAGGTAAA
8185219 CAGTCCATATG-TCCCGAAGAACATAGGTAAACAGTCC-ATGTCCCGAAGAACATAGGTAAACAG
1 CAGTCCATA-GATCCCGAAGAACATAGGTAAACAGTCCAATGTCCCGAAGAACATAGGTAAACAG
8185282 TCCATATGTCCCGAAGAACATAGGTAA
65 TCCATATGTCCCGAAGAACATAGGTAA
8185309 CCCTCGACCC
Statistics
Matches: 87, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
91 53 0.61
93 33 0.38
94 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (92 bp):
CAGTCCATAGATCCCGAAGAACATAGGTAAACAGTCCAATGTCCCGAAGAACATAGGTAAACAGT
CCATATGTCCCGAAGAACATAGGTAAA
Found at i:8189689 original size:50 final size:52
Alignment explanation
Indices: 8189630--8189753 Score: 164
Period size: 50 Copynumber: 2.4 Consensus size: 52
8189620 TTATACAAAA
*
8189630 CGCGGTACCTGATCAGCGCTATATAAAATTATATC-AGAGTAAAGGTAT-GT
1 CGCGGTACCTGATCCGCGCTATATAAAATTATATCGAGAGTAAAGGTATAGT
** * *
8189680 CGCGGTACCTGCCCCGCGCTATATAAAATTATGTCGGGAGTAAAGGTATAGT
1 CGCGGTACCTGATCCGCGCTATATAAAATTATATCGAGAGTAAAGGTATAGT
* *
8189732 -GCGGTTCGTGATCCGCGCTATA
1 CGCGGTACCTGATCCGCGCTATA
8189754 CCCTTACGTG
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
50 31 0.49
51 30 0.48
52 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (52 bp):
CGCGGTACCTGATCCGCGCTATATAAAATTATATCGAGAGTAAAGGTATAGT
Found at i:8189845 original size:50 final size:51
Alignment explanation
Indices: 8189765--8189892 Score: 141
Period size: 51 Copynumber: 2.5 Consensus size: 51
8189755 CCTTACGTGG
* * * * **
8189765 CGTATAGGGCGCTGCAGGGGTCGCGCTATA-CCCACGTGACGCCAGCTCAC
1 CGTATAGCGCGGTACAGGGGGCGCGCTATACCCCACGTGACGCCAAATCAC
* * ** *
8189815 CGTATAGCGCGGTTCAGGGGGCGCGTTATACCCCACGTGGTGCCAAATCAT
1 CGTATAGCGCGGTACAGGGGGCGCGCTATACCCCACGTGACGCCAAATCAC
*
8189866 CGTATAACGCGGTACAGGGGGCGCGCT
1 CGTATAGCGCGGTACAGGGGGCGCGCT
8189893 TTACTGCTAA
Statistics
Matches: 64, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
50 25 0.39
51 39 0.61
ACGTcount: A:0.19, C:0.30, G:0.34, T:0.18
Consensus pattern (51 bp):
CGTATAGCGCGGTACAGGGGGCGCGCTATACCCCACGTGACGCCAAATCAC
Found at i:8201521 original size:32 final size:33
Alignment explanation
Indices: 8201470--8201544 Score: 98
Period size: 32 Copynumber: 2.3 Consensus size: 33
8201460 TTTGGGGTGA
* * * *
8201470 GATTTCGATTGTTGTCTTTGTGTTG-TTCATTG
1 GATTTTGATTGTTGCCTTTGGGTTGTTTCAGTG
*
8201502 GCTTTTGATTGTTGCCTTTGGGTTGTTTCAGTG
1 GATTTTGATTGTTGCCTTTGGGTTGTTTCAGTG
8201535 GATTTTGATT
1 GATTTTGATT
8201545 TTTGTTCCTC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 21 0.58
33 15 0.42
ACGTcount: A:0.09, C:0.09, G:0.27, T:0.55
Consensus pattern (33 bp):
GATTTTGATTGTTGCCTTTGGGTTGTTTCAGTG
Found at i:8212693 original size:4 final size:4
Alignment explanation
Indices: 8212678--8212718 Score: 73
Period size: 4 Copynumber: 10.2 Consensus size: 4
8212668 CAAAGGCTGG
*
8212678 TACA TTCA TACA TACA TACA TACA TACA TACA TACA TACA T
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA T
8212719 GAATGGTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.29
Consensus pattern (4 bp):
TACA
Found at i:8213822 original size:15 final size:15
Alignment explanation
Indices: 8213794--8213886 Score: 136
Period size: 15 Copynumber: 6.3 Consensus size: 15
8213784 AAATAATTTT
8213794 AAATAATTTA--ATA
1 AAATAATTTATTATA
* *
8213807 AGATTATTTATTATA
1 AAATAATTTATTATA
*
8213822 AAATAATTTATTTTA
1 AAATAATTTATTATA
8213837 AAATAATTTATTATA
1 AAATAATTTATTATA
*
8213852 AAATAATTTATTTTA
1 AAATAATTTATTATA
8213867 AAATAATTTATTATA
1 AAATAATTTATTATA
8213882 AAATA
1 AAATA
8213887 TGGATTGATT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
13 8 0.11
15 62 0.89
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (15 bp):
AAATAATTTATTATA
Found at i:8213848 original size:30 final size:30
Alignment explanation
Indices: 8213812--8213966 Score: 159
Period size: 37 Copynumber: 4.7 Consensus size: 30
8213802 TAATAAGATT
8213812 ATTTATTATAAAATAATTTATTTTAAAATA
1 ATTTATTATAAAATAATTTATTTTAAAATA
8213842 ATTTATTATAAAATAATTTATTTTAAAATA
1 ATTTATTATAAAATAATTTATTTTAAAATA
8213872 ATTTATTATAAAATATGGATTGATTTATTTTAAAATA
1 ATTTATTAT-AAA-AT--A---ATTTATTTTAAAATA
*
8213909 AATTATTATAAAATATGGATTGATTTATTTTAAAATA
1 ATTTATTAT-AAA-AT--A---ATTTATTTTAAAATA
*
8213946 ATTTATT-TTAAATAATTTATT
1 ATTTATTATAAAATAATTTATT
8213967 AGTATGGATT
Statistics
Matches: 115, Mismatches: 3, Indels: 15
0.86 0.02 0.11
Matches are distributed among these distances:
29 7 0.06
30 39 0.34
31 3 0.03
32 3 0.03
34 3 0.03
35 2 0.02
36 1 0.01
37 57 0.50
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (30 bp):
ATTTATTATAAAATAATTTATTTTAAAATA
Found at i:8213897 original size:22 final size:22
Alignment explanation
Indices: 8213872--8214011 Score: 114
Period size: 22 Copynumber: 6.5 Consensus size: 22
8213862 TTTTAAAATA
*
8213872 ATTTATTATAAAATATGGATTG
1 ATTTATTTTAAAATATGGATTG
8213894 ATTTATTTTAAAATA---A---
1 ATTTATTTTAAAATATGGATTG
*
8213910 A-TTATTATAAAATATGGATTG
1 ATTTATTTTAAAATATGGATTG
** *
8213931 ATTTATTTTAAAATAATTTATTTT
1 ATTTATTTTAAAAT-ATGGA-TTG
** * * *
8213955 AAATAATTTATTAGTATGGATTG
1 ATTTATTTTA-AAATATGGATTG
8213978 ATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATATGGATTG
8214000 ATTTATTTTAAA
1 ATTTATTTTAAA
8214012 TAATTTATTA
Statistics
Matches: 89, Mismatches: 19, Indels: 20
0.70 0.15 0.16
Matches are distributed among these distances:
15 12 0.13
16 1 0.01
18 1 0.01
19 1 0.01
21 1 0.01
22 47 0.53
23 12 0.13
24 12 0.13
25 2 0.02
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (22 bp):
ATTTATTTTAAAATATGGATTG
Found at i:8213907 original size:37 final size:37
Alignment explanation
Indices: 8213857--8213957 Score: 184
Period size: 37 Copynumber: 2.7 Consensus size: 37
8213847 TTATAAAATA
8213857 ATTTATTTTAAAATAATTTATTATAAAATATGGATTG
1 ATTTATTTTAAAATAATTTATTATAAAATATGGATTG
*
8213894 ATTTATTTTAAAATAAATTATTATAAAATATGGATTG
1 ATTTATTTTAAAATAATTTATTATAAAATATGGATTG
*
8213931 ATTTATTTTAAAATAATTTATTTTAAA
1 ATTTATTTTAAAATAATTTATTATAAA
8213958 TAATTTATTA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.50
Consensus pattern (37 bp):
ATTTATTTTAAAATAATTTATTATAAAATATGGATTG
Found at i:8213951 original size:15 final size:14
Alignment explanation
Indices: 8213931--8213966 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
8213921 ATATGGATTG
8213931 ATTTATTTTAAAATA
1 ATTTATTTT-AAATA
8213946 ATTTATTTTAAATA
1 ATTTATTTTAAATA
8213960 ATTTATT
1 ATTTATT
8213967 AGTATGGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:8213960 original size:14 final size:15
Alignment explanation
Indices: 8213812--8213966 Score: 132
Period size: 15 Copynumber: 9.5 Consensus size: 15
8213802 TAATAAGATT
*
8213812 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
8213827 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
8213842 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
8213857 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
8213872 ATTTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
8213891 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
* *
8213909 AATTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
8213928 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
8213946 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
8213960 ATTTATT
1 ATTTATT
8213967 AGTATGGATT
Statistics
Matches: 117, Mismatches: 9, Indels: 29
0.75 0.06 0.19
Matches are distributed among these distances:
14 12 0.10
15 64 0.55
16 8 0.07
17 4 0.03
18 2 0.02
19 2 0.02
20 4 0.03
21 8 0.07
22 13 0.11
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:8213984 original size:32 final size:32
Alignment explanation
Indices: 8213946--8214043 Score: 108
Period size: 32 Copynumber: 3.4 Consensus size: 32
8213936 TTTTAAAATA
8213946 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
8213978 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
* *
8214000 ATTTATTTTAAATAATTTATTAGTATCGATTT
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
8214032 ATTTATTTTAAA
1 ATTTATTTTAAA
8214044 ATATGGATTG
Statistics
Matches: 54, Mismatches: 2, Indels: 20
0.71 0.03 0.26
Matches are distributed among these distances:
22 14 0.26
23 4 0.07
25 1 0.02
26 3 0.06
28 3 0.06
29 1 0.02
31 4 0.07
32 24 0.44
ACGTcount: A:0.36, C:0.01, G:0.09, T:0.54
Consensus pattern (32 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTG
Found at i:8214162 original size:31 final size:31
Alignment explanation
Indices: 8214124--8214319 Score: 281
Period size: 31 Copynumber: 6.6 Consensus size: 31
8214114 TTATTTTAAA
8214124 ATGGATTGATTTATTTTAAATATTTATTAGT
1 ATGGATTGATTTATTTTAAATATTTATTAGT
8214155 ATGGATTGATTTATTTT--A-A---A--A-T
1 ATGGATTGATTTATTTTAAATATTTATTAGT
8214177 ATGGATTGATTTATTTTAAA-ATTTATTAGT
1 ATGGATTGATTTATTTTAAATATTTATTAGT
8214207 ATGGATTGATTTATTTT-AATATTTATTAGT
1 ATGGATTGATTTATTTTAAATATTTATTAGT
*
8214237 ATGAATTGATTTATTTTAAATAATTTATTAGT
1 ATGGATTGATTTATTTTAAAT-ATTTATTAGT
8214269 ATGGATTGATTTATTTT-AATAATTTATTAGT
1 ATGGATTGATTTATTTTAAAT-ATTTATTAGT
8214300 ATGGATTGATTTATTTTAAA
1 ATGGATTGATTTATTTTAAA
8214320 ATATGGATTT
Statistics
Matches: 151, Mismatches: 2, Indels: 23
0.86 0.01 0.13
Matches are distributed among these distances:
22 18 0.12
23 1 0.01
24 2 0.01
25 1 0.01
27 1 0.01
28 1 0.01
29 4 0.03
30 44 0.29
31 51 0.34
32 28 0.19
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.54
Consensus pattern (31 bp):
ATGGATTGATTTATTTTAAATATTTATTAGT
Found at i:8214179 original size:22 final size:22
Alignment explanation
Indices: 8214154--8214198 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
8214144 TATTTATTAG
8214154 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
8214176 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
8214198 T
1 T
8214199 TTATTAGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:8214364 original size:18 final size:18
Alignment explanation
Indices: 8214341--8214388 Score: 51
Period size: 22 Copynumber: 2.4 Consensus size: 18
8214331 ATTTTAAATA
*
8214341 ATTTATTAGTATGGATTG
1 ATTTATTAATATGGATTG
8214359 ATTTATTTTAAAATATGGATTG
1 ATTTA--TT--AATATGGATTG
8214381 ATTTATTA
1 ATTTATTA
8214389 TTGTAGTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
18 6 0.24
20 4 0.16
22 15 0.60
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (18 bp):
ATTTATTAATATGGATTG
Found at i:8214368 original size:327 final size:323
Alignment explanation
Indices: 8213946--8214603 Score: 1046
Period size: 327 Copynumber: 2.0 Consensus size: 323
8213936 TTTTAAAATA
8213946 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAA
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATT-ATTTATTTTAA
*
8214011 ATAATTTATTAGTATCGATTTATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGG
65 ATAATTTATTAGTATCGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGG
* * **
8214076 ATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTATTTT-AAA-ATGGATTGATTTATT
130 ATTGATTTACTATAAA-AAAAT-TTAGTATGTATTGATTTATTTTAAAATATGGATTGATTTA-T
*
8214139 TTAAAT-ATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATT-TATTTT-AA-AATT
192 TTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGGTTAT-TTTTAAATAATT
8214200 TATTAGTATGGATTGATTTATTTTAATATTTATTAGTATGAATTGATTTATTTTAAATAATTTAT
256 TATTAGTATGGATTGA-TTATTTT-A-A---A--A-TATGAATTGATTTATTTTAAATAATTTAT
8214265 TAGTATGGATTG
312 TAGTATGGATTG
8214277 ATTTATTTT-AATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGA-T-TTTATTTTAAA
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTATTTATTTTAAA
* *
8214339 TAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTTTATGGA
66 TAATTTATTAGTATCGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGA
8214404 TTGATTTACTATAAAAAAATTTAGTATGTATTGATTTATTTTAAAATATGGATTGATTTATTTAA
131 TTGATTTACTATAAAAAAATTTAGTATGTATTGATTTATTTTAAAATATGGATTGATTTATTTAA
8214469 ATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGGTTATTTTTAAATAATTTATTA
196 ATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGGTTATTTTTAAATAATTTATTA
*
8214534 GTATGGATTGATTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTG
261 GTATGGATTGATTATTTTAAAATATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTG
8214597 ATTTATT
1 ATTTATT
8214604 ATTGTAGTTA
Statistics
Matches: 312, Mismatches: 9, Indels: 23
0.91 0.03 0.07
Matches are distributed among these distances:
320 47 0.15
321 1 0.00
323 1 0.00
325 22 0.07
326 14 0.04
327 146 0.47
328 10 0.03
329 21 0.07
330 41 0.13
331 9 0.03
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (323 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTATTTATTTTAAA
TAATTTATTAGTATCGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGA
TTGATTTACTATAAAAAAATTTAGTATGTATTGATTTATTTTAAAATATGGATTGATTTATTTAA
ATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGGTTATTTTTAAATAATTTATTA
GTATGGATTGATTATTTTAAAATATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTG
Found at i:8214518 original size:21 final size:22
Alignment explanation
Indices: 8214481--8214525 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
8214471 AATTTATTAG
*
8214481 TATGGATTGATTTATTTTAAAA
1 TATGGATTGAGTTATTTTAAAA
*
8214503 TATGGATTG-GTTATTTTTAAA
1 TATGGATTGAGTTATTTTAAAA
8214524 TA
1 TA
8214526 ATTTATTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (22 bp):
TATGGATTGAGTTATTTTAAAA
Found at i:8214559 original size:21 final size:22
Alignment explanation
Indices: 8214535--8214576 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
8214525 AATTTATTAG
8214535 TATGGATTGA-TTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
8214556 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
8214577 TAATTTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:8214592 original size:32 final size:32
Alignment explanation
Indices: 8214556--8214662 Score: 117
Period size: 32 Copynumber: 3.7 Consensus size: 32
8214546 TATTTTAAAA
8214556 TATGGATTGATTTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATTTTAAATAATTTATTAG
* *
8214588 TATGGATTGATTTA--TT--AT--TGTAGT--
1 TATGGATTGATTTATTTTAAATAATTTATTAG
*
8214612 TATGAATTG--TTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATTTTAAATAATTTATTAG
8214642 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
8214663 ATATGAATTG
Statistics
Matches: 59, Mismatches: 6, Indels: 20
0.69 0.07 0.24
Matches are distributed among these distances:
22 3 0.05
24 10 0.17
26 6 0.10
28 6 0.10
30 10 0.17
32 24 0.41
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (32 bp):
TATGGATTGATTTATTTTAAATAATTTATTAG
Found at i:8214658 original size:22 final size:22
Alignment explanation
Indices: 8214642--8214684 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
8214632 AATTTATTAG
*
8214642 TATGGATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
8214664 TATGAATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
8214685 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:8215243 original size:2 final size:2
Alignment explanation
Indices: 8215238--8215264 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8215228 TTTTAAATAA
8215238 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8215265 ATTGTCGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8215694 original size:4 final size:4
Alignment explanation
Indices: 8215685--8215777 Score: 55
Period size: 4 Copynumber: 23.0 Consensus size: 4
8215675 GACAATATAC
** * * * *
8215685 ATAA ATAA ATGG ATAA AT-A ATAA ACAA ATATGA GTAA ATAA ATCA A-AG
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA--A ATAA ATAA ATAA ATAA
* * * *
8215733 ATAA AGAA ATAA GAAAA ATAA ATAA ATAG ATAA CTAA ATAA ATAA
1 ATAA ATAA ATAA -ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
8215778 GATGAGGAAA
Statistics
Matches: 64, Mismatches: 20, Indels: 10
0.68 0.21 0.11
Matches are distributed among these distances:
3 4 0.06
4 54 0.84
5 3 0.05
6 3 0.05
ACGTcount: A:0.67, C:0.03, G:0.09, T:0.22
Consensus pattern (4 bp):
ATAA
Found at i:8215736 original size:29 final size:29
Alignment explanation
Indices: 8215697--8215773 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
8215687 AAATAAATGG
* *
8215697 ATAAATA-ATAAACAAATATGAGTAAATAA
1 ATAAATAGATAAACAAATAAGA-AAAATAA
* *
8215726 ATCAA-AGATAAAGAAATAAGAAAAATAA
1 ATAAATAGATAAACAAATAAGAAAAATAA
8215754 ATAAATAGAT-AACTAAATAA
1 ATAAATAGATAAAC-AAATAA
8215774 ATAAGATGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
28 13 0.33
29 26 0.67
ACGTcount: A:0.68, C:0.04, G:0.08, T:0.21
Consensus pattern (29 bp):
ATAAATAGATAAACAAATAAGAAAAATAA
Found at i:8218399 original size:211 final size:211
Alignment explanation
Indices: 8218026--8218836 Score: 1306
Period size: 211 Copynumber: 3.8 Consensus size: 211
8218016 GTATATAGCT
**** * * *
8218026 CCTTCGTCGTGAAGTTGAACTTATACTGTCTTGAGTCCAAAATCCTTCGTTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* * * * *
8218091 GGCTCTGAAGTTGGGAAGTTATTTATTGACAACCAGCGGTCCCTTCTTCGTGAAGTTGAACTTGC
66 GGCTCTGAAATTGAGAAGATGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
* *
8218156 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTATTT
131 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA-ATGTTT
8218221 GTTGACAACCAGCGGTC
195 GTTGACAACCAGCGGTC
8218238 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* *
8218303 GGCTCTGAAATTGGGAA-ATGTTTATTGACAACCAGCGATCCCTTCGTCGTGAAGTTGAACTTGC
66 GGCTCTGAAATTGAGAAGATGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
* * *
8218367 GTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATGTTTA
131 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTG
8218432 TTGACAACCAGCGGTC
196 TTGACAACCAGCGGTC
*
8218448 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* * ** *
8218513 GGCTCTGAATTTGAGAAGTTGTTTGCTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTAC
66 GGCTCTGAAATTGAGAAGATGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
8218578 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCT-AAATTTGAGAAATGTTT
131 GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAA-TTGAGAAATGTTT
8218642 GTTGACAACCAGCGGTC
195 GTTGACAACCAGCGGTC
8218659 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTTGAAAT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAG-TTGAAAT
*
8218724 TGGCTCT-AAATTTGAGAA-ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTT
65 TGGCTCTGAAA-TTGAGAAGATGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTT
* *
8218787 GCGTTGTCTCGAATCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTG
129 GCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTG
8218837 GGTAAAACCA
Statistics
Matches: 559, Mismatches: 35, Indels: 10
0.93 0.06 0.02
Matches are distributed among these distances:
210 102 0.18
211 362 0.65
212 95 0.17
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (211 bp):
CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
GGCTCTGAAATTGAGAAGATGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
GTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTG
TTGACAACCAGCGGTC
Found at i:8218400 original size:105 final size:105
Alignment explanation
Indices: 8218026--8218836 Score: 1302
Period size: 106 Copynumber: 7.7 Consensus size: 105
8218016 GTATATAGCT
**** * * *
8218026 CCTTCGTCGTGAAGTTGAACTTATACTGTCTTGAGTCCAAAATCCTTCGTTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* * * * *
8218091 GGCTCTGAAGTTGGGAAGTTATTTATTGACAACCAGCGGTC
66 GGCTCTGAAATTGAGAA-ATGTTTGTTGACAACCAGCGGTC
*
8218132 CCTTCTTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* *
8218197 GGCTCTGAAATTGAGAAGTTATTTGTTGACAACCAGCGGTC
66 GGCTCTGAAATTGAGAA-ATGTTTGTTGACAACCAGCGGTC
8218238 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* * *
8218303 GGCTCTGAAATTGGGAAATGTTTATTGACAACCAGCGATC
66 GGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTC
*
8218343 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* *
8218408 GGCTCTGAAATTGGGAAATGTTTATTGACAACCAGCGGTC
66 GGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTC
*
8218448 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
* * *
8218513 GGCTCTGAATTTGAGAAGTTGTTTGCTGACAACCAGCGGTC
66 GGCTCTGAAATTGAGAA-ATGTTTGTTGACAACCAGCGGTC
*
8218554 CCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
8218619 GGCTCT-AAATTTGAGAAATGTTTGTTGACAACCAGCGGTC
66 GGCTCTGAAA-TTGAGAAATGTTTGTTGACAACCAGCGGTC
8218659 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTTGAAAT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAG-TTGAAAT
8218724 TGGCTCT-AAATTTGAGAAATGTTTGTTGACAACCAGCGGTC
65 TGGCTCTGAAA-TTGAGAAATGTTTGTTGACAACCAGCGGTC
* *
8218765 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAATCCAATATCCTTCGCTGTGAAGTTGAAATT
1 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
8218830 GGCTCTG
66 GGCTCTG
8218837 GGTAAAACCA
Statistics
Matches: 669, Mismatches: 32, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
105 295 0.44
106 374 0.56
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (105 bp):
CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
GGCTCTGAAATTGAGAAATGTTTGTTGACAACCAGCGGTC
Found at i:8219319 original size:386 final size:386
Alignment explanation
Indices: 8218671--8219442 Score: 1526
Period size: 386 Copynumber: 2.0 Consensus size: 386
8218661 TTCGTCGTGA
8218671 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTTGAAATTGGCTCTAAATT
1 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTTGAAATTGGCTCTAAATT
8218736 TGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAAT
66 TGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAAT
8218801 CCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGGGTAAAACCAGCAAAGATATGCATATATG
131 CCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGGGTAAAACCAGCAAAGATATGCATATATG
*
8218866 CGATGGTATGGATGTCATGCTCTTAGGTATGCCTAAAATGTATGGGCAACATATGTTATTCTGGG
196 CGATGGTATGGATGTCATGCTCTTAGGTATGCCTAAAATGTATGGGCAACATATGTTATTATGGG
8218931 CTCTGGAGAGAAATCTTGATTTCCGGTGGCTTGTCATTGTTGACTCTTGATTTTGAAAGCTTGAA
261 CTCTGGAGAGAAATCTTGATTTCCGGTGGCTTGTCATTGTTGACTCTTGATTTTGAAAGCTTGAA
8218996 GTTCCGATCTCTGATCTTGAATTTTTCAAATGTCTGAATCTGATGTGCACATTCTGTTTTT
326 GTTCCGATCTCTGATCTTGAATTTTTCAAATGTCTGAATCTGATGTGCACATTCTGTTTTT
8219057 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTTGAAATTGGCTCTAAATT
1 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTTGAAATTGGCTCTAAATT
*
8219122 TGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTCGAAT
66 TGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAAT
8219187 CCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGGGTAAAACCAGCAAAGATATGCATATATG
131 CCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGGGTAAAACCAGCAAAGATATGCATATATG
8219252 CGATGGTATGGATGTCATGCTCTTAGGTATGCCTAAAATGTATGGGCAACATATGTTATTATGGG
196 CGATGGTATGGATGTCATGCTCTTAGGTATGCCTAAAATGTATGGGCAACATATGTTATTATGGG
8219317 CTCTGGAGAGAAATCTTGATTTCCGGTGGCTTGTCATTGTTGACTCTTGATTTTGAAAGCTTGAA
261 CTCTGGAGAGAAATCTTGATTTCCGGTGGCTTGTCATTGTTGACTCTTGATTTTGAAAGCTTGAA
8219382 GTTCCGATCTCTGATCTTGAATTTTTCAAATGTCTGAATCTGATGTGCACATTCTGTTTTT
326 GTTCCGATCTCTGATCTTGAATTTTTCAAATGTCTGAATCTGATGTGCACATTCTGTTTTT
8219443 TTTTTTTTGG
Statistics
Matches: 384, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
386 384 1.00
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (386 bp):
AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTTGAAATTGGCTCTAAATT
TGAGAAATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAAT
CCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGGGTAAAACCAGCAAAGATATGCATATATG
CGATGGTATGGATGTCATGCTCTTAGGTATGCCTAAAATGTATGGGCAACATATGTTATTATGGG
CTCTGGAGAGAAATCTTGATTTCCGGTGGCTTGTCATTGTTGACTCTTGATTTTGAAAGCTTGAA
GTTCCGATCTCTGATCTTGAATTTTTCAAATGTCTGAATCTGATGTGCACATTCTGTTTTT
Found at i:8220061 original size:6 final size:6
Alignment explanation
Indices: 8220052--8220085 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
8220042 TCTTTTTGTT
8220052 TTTTTG TTTTTG TTTTTG TTTTTG TTTTT- TTTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
8220086 CAACTTAGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (6 bp):
TTTTTG
Found at i:8225137 original size:15 final size:15
Alignment explanation
Indices: 8225117--8225150 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
8225107 TCTTTGAATG
8225117 GCCCCAGTGGTCTTT
1 GCCCCAGTGGTCTTT
8225132 GCCCCAGTGGTCTTT
1 GCCCCAGTGGTCTTT
8225147 GCCC
1 GCCC
8225151 TACTTTACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.06, C:0.38, G:0.26, T:0.29
Consensus pattern (15 bp):
GCCCCAGTGGTCTTT
Found at i:8231381 original size:2 final size:2
Alignment explanation
Indices: 8231374--8231431 Score: 109
Period size: 2 Copynumber: 29.5 Consensus size: 2
8231364 ACGTAATAAT
8231374 TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8231415 TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
8231432 GGTGTCTAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 54 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8238140 original size:13 final size:13
Alignment explanation
Indices: 8238137--8238181 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
8238127 CCGTTGACCC
*
8238137 GACCCAACCCGTT
1 GACCCGACCCGTT
* *
8238150 TACCTGACCCGTT
1 GACCCGACCCGTT
*
8238163 GACCCGACCCATT
1 GACCCGACCCGTT
8238176 GACCCG
1 GACCCG
8238182 TTGACCGTAG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.20, C:0.44, G:0.18, T:0.18
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:8238158 original size:31 final size:32
Alignment explanation
Indices: 8238119--8238202 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 32
8238109 GTCACAACCC
8238119 GACCTGACCCGTTGACCCGACCCA-ACCCGTT
1 GACCTGACCCGTTGACCCGACCCATACCCGTT
*
8238150 TACCTGACCCGTTGACCCGACCCATTGACCCGTT
1 GACCTGACCCGTTGACCCGACCCA-T-ACCCGTT
8238184 GACCGTAGACCCGTTGACC
1 GACC-T-GACCCGTTGACC
8238203 GTTGACTACT
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
31 23 0.50
34 10 0.22
35 1 0.02
36 12 0.26
ACGTcount: A:0.19, C:0.42, G:0.20, T:0.19
Consensus pattern (32 bp):
GACCTGACCCGTTGACCCGACCCATACCCGTT
Found at i:8238167 original size:8 final size:8
Alignment explanation
Indices: 8238154--8238208 Score: 57
Period size: 8 Copynumber: 7.5 Consensus size: 8
8238144 CCCGTTTACC
8238154 TGACCCGT
1 TGACCCGT
8238162 TGACCC--
1 TGACCCGT
*
8238168 -GACCCAT
1 TGACCCGT
8238175 TGACCCGT
1 TGACCCGT
8238183 TGA-CCGT
1 TGACCCGT
*
8238190 AGACCCGT
1 TGACCCGT
8238198 TGA-CCGT
1 TGACCCGT
8238205 TGAC
1 TGAC
8238209 TACTGTTGAC
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
5 5 0.13
7 13 0.33
8 21 0.54
ACGTcount: A:0.18, C:0.36, G:0.24, T:0.22
Consensus pattern (8 bp):
TGACCCGT
Found at i:8238196 original size:15 final size:15
Alignment explanation
Indices: 8238176--8238204 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8238166 CCGACCCATT
8238176 GACCCGTTGACCGTA
1 GACCCGTTGACCGTA
8238191 GACCCGTTGACCGT
1 GACCCGTTGACCGT
8238205 TGACTACTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.34, G:0.28, T:0.21
Consensus pattern (15 bp):
GACCCGTTGACCGTA
Found at i:8240757 original size:12 final size:12
Alignment explanation
Indices: 8240742--8240801 Score: 77
Period size: 12 Copynumber: 5.0 Consensus size: 12
8240732 GATAAATTAC
8240742 CTGAATTCTGTT
1 CTGAATTCTGTT
* *
8240754 CTGATTTCTGAT
1 CTGAATTCTGTT
*
8240766 CTGGATTCTGTT
1 CTGAATTCTGTT
8240778 CTGATATT-TGTT
1 CTGA-ATTCTGTT
8240790 CTGAATTCTGTT
1 CTGAATTCTGTT
8240802 TTGATTTATG
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
11 3 0.08
12 34 0.85
13 3 0.08
ACGTcount: A:0.15, C:0.15, G:0.18, T:0.52
Consensus pattern (12 bp):
CTGAATTCTGTT
Found at i:8240773 original size:24 final size:23
Alignment explanation
Indices: 8240719--8240813 Score: 93
Period size: 24 Copynumber: 4.0 Consensus size: 23
8240709 ATTTCCGACT
* *
8240719 TGAATTCTGTTCTGATAAATT-ACC
1 TGAATTCTGTTCTGAT--TTTGATC
8240743 TGAATTCTGTTCTGATTTCTGATC
1 TGAATTCTGTTCTGATTT-TGATC
* *
8240767 TGGATTCTGTTCTGATATTTGTTC
1 TGAATTCTGTTCTGAT-TTTGATC
*
8240791 TGAATTCTGTTTTGATTTATGAT
1 TGAATTCTGTTCTGATTT-TGAT
8240814 ATCTTCGTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
22 1 0.02
23 3 0.05
24 54 0.90
25 2 0.03
ACGTcount: A:0.20, C:0.13, G:0.17, T:0.51
Consensus pattern (23 bp):
TGAATTCTGTTCTGATTTTGATC
Found at i:8244757 original size:33 final size:33
Alignment explanation
Indices: 8244720--8244793 Score: 139
Period size: 33 Copynumber: 2.2 Consensus size: 33
8244710 ACCCAGCTGC
*
8244720 CACTCTCCTGCTCTTTGGACCCCATGCACCGTT
1 CACTCTCCTGCTCTTTGGACCCCACGCACCGTT
8244753 CACTCTCCTGCTCTTTGGACCCCACGCACCGTT
1 CACTCTCCTGCTCTTTGGACCCCACGCACCGTT
8244786 CACTCTCC
1 CACTCTCC
8244794 ATATAAAAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.12, C:0.46, G:0.14, T:0.28
Consensus pattern (33 bp):
CACTCTCCTGCTCTTTGGACCCCACGCACCGTT
Done.