genome.fa.s8529.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008529.1 Hibiscus syriacus cultivar Beakdansim tig00111404_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55556

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599--655	21	2.7	21	97	0	105	31	0	8	59	1.28
15202--15262	23	2.9	21	85	7	70	21	36	26	16	1.94
15245--15282	20	1.9	20	88	0	58	26	36	26	10	1.89
22639--22698	28	2.1	29	87	3	86	35	20	15	30	1.93
22988--23012	13	1.9	13	100	0	50	48	0	0	52	1.00
23724--23769	23	2.0	23	95	0	83	34	19	4	41	1.71
24688--24718	6	5.2	6	92	0	53	45	35	3	16	1.63
27407--27510	53	2.0	53	88	0	154	25	17	25	32	1.97
28017--28097	29	3.1	25	77	15	76	46	1	0	51	1.08
28059--28113	21	2.5	22	88	5	85	47	0	0	52	1.00
28058--28113	19	2.8	20	84	10	69	46	0	0	53	1.00
30997--31154	21	7.8	20	70	7	77	37	24	17	19	1.93
31122--31432	20	15.5	20	81	6	79	34	26	19	20	1.96
31122--31511	40	9.7	40	87	2	439	35	25	18	20	1.95
31160--31511	20	17.6	19	85	5	398	34	25	18	21	1.96
32187--32233	24	2.0	24	87	8	69	25	14	21	38	1.92
34712--34985	19	15.4	19	81	15	354	46	17	21	13	1.83
34740--35007	109	2.5	105	91	6	459	46	16	22	14	1.83
34740--35007	52	5.0	52	93	4	455	46	16	22	14	1.83
35014--35096	20	4.6	19	81	15	113	14	24	18	43	1.87
35203--35239	14	2.6	14	91	0	65	45	21	0	32	1.52
37190--37246	14	3.7	14	77	20	60	45	22	21	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37171--37263	33	2.8	33	95	0	168	47	21	20	10	1.80
37134--37268	19	7.6	19	76	16	128	45	23	19	11	1.82
37264--37392	19	7.3	19	75	17	125	8	17	28	45	1.77
37264--37355	33	2.8	33	93	3	150	7	18	28	45	1.76
37436--37814	92	4.1	93	98	0	735	46	18	12	22	1.83
37436--37814	185	2.0	185	98	1	733	46	18	12	22	1.83
39518--39607	14	5.7	14	74	23	81	42	23	25	8	1.83
39510--39624	33	3.5	33	95	0	212	45	20	24	9	1.81
39517--39629	19	6.8	18	72	23	88	43	22	24	9	1.83
39641--39695	14	3.6	14	73	21	56	9	25	23	41	1.83
39625--39695	33	2.2	33	94	0	124	8	22	25	43	1.81
39636--39717	33	2.5	33	89	2	119	9	25	21	42	1.84
39648--39736	20	4.8	20	72	19	75	12	24	19	43	1.85
39816--39885	33	2.2	33	89	2	106	48	18	21	11	1.79
40067--40121	22	2.5	22	81	0	74	20	16	40	23	1.91
40267--40459	20	9.6	20	82	5	219	19	19	25	35	1.95
40267--40459	60	3.2	60	83	0	251	19	19	25	35	1.95
40916--40965	18	2.8	18	75	0	55	12	40	8	40	1.72
41984--42040	27	2.1	27	96	0	105	21	7	10	61	1.52
42876--43071	49	4.0	49	95	0	329	26	18	11	43	1.84
45614--45649	2	18.0	2	88	0	54	0	47	2	50	1.15
48675--48747	19	3.8	19	100	0	146	26	16	35	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48567--48705	64	2.2	64	84	1	170	30	13	23	32	1.93
48775--48812	20	1.9	20	88	0	58	18	13	34	34	1.89
51402--51444	21	2.0	21	81	9	50	25	23	23	27	2.00

Tables:   1

The End!