genome.fa.s853.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000853.1 Hibiscus syriacus cultivar Beakdansim tig00001655_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42742

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1221--1255	14	2.6	13	82	8	52	31	0	25	42	1.55
1482--1538	18	3.4	18	70	25	61	14	22	19	43	1.86
1411--1537	63	2.0	63	89	6	195	15	22	19	41	1.89
1417--1538	31	3.8	33	81	8	164	14	22	19	42	1.88
3984--4037	24	2.2	24	90	0	81	40	20	16	22	1.91
4762--4812	20	2.5	20	96	0	93	31	19	31	17	1.95
5023--5072	19	2.5	20	87	3	66	34	24	22	20	1.97
5103--5156	14	3.5	14	75	22	54	11	22	20	46	1.82
5085--5155	33	2.2	33	81	0	79	19	21	21	38	1.94
5269--5305	14	2.6	14	86	0	56	48	21	0	29	1.50
7166--7219	20	2.7	20	80	11	65	37	22	22	18	1.95
7236--7286	18	2.8	18	81	3	57	43	23	19	13	1.87
7298--7355	14	3.9	14	79	16	71	10	17	24	48	1.78
7281--7371	32	2.8	33	94	3	166	12	18	21	47	1.81
7358--7410	20	2.7	20	90	0	79	15	20	24	39	1.91
7894--7936	18	2.4	18	84	0	59	16	16	41	25	1.88
9255--9293	20	2.0	20	89	0	60	53	17	15	12	1.72
9265--9332	20	3.4	20	91	0	100	38	25	16	20	1.92
9858--9912	17	3.1	17	92	7	83	27	18	23	30	1.97
9840--9912	37	2.0	37	91	0	119	26	17	24	31	1.97
9782--9912	20	6.7	20	83	7	135	25	18	25	30	1.98
9983--10023	21	2.0	21	85	0	55	36	31	14	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10858--10943	26	3.2	26	65	28	70	43	6	11	38	1.68
10854--10943	29	3.2	29	67	17	89	43	6	12	37	1.68
10833--10943	56	2.0	56	94	0	195	42	7	11	38	1.69
13755--13836	29	2.8	29	94	1	137	32	14	9	42	1.79
15124--15153	15	2.0	15	93	0	51	56	23	0	20	1.42
18514--18595	29	2.8	29	94	1	137	32	14	9	42	1.79
21696--21774	36	2.2	36	84	4	97	41	7	6	44	1.58
21706--21782	19	4.3	18	70	23	56	38	6	6	48	1.55
21714--21786	36	2.0	36	94	0	128	36	6	6	49	1.56
21727--21797	36	2.1	34	82	12	85	38	7	5	49	1.54
22917--22975	28	2.2	27	81	6	66	22	15	8	54	1.68
25242--25286	23	2.0	23	86	0	63	26	26	26	20	1.99
28357--28397	22	1.9	22	95	5	75	43	17	19	19	1.88
28526--28577	26	2.0	26	92	0	86	57	0	38	3	1.17
29527--29562	18	2.0	18	100	0	72	22	5	50	22	1.70
31241--31298	21	2.7	23	80	17	63	43	3	5	48	1.42
31252--31500	27	9.3	27	83	10	293	40	10	1	47	1.47
31304--31495	14	13.9	14	77	17	172	39	10	0	48	1.42
33784--33849	32	2.1	31	84	15	84	56	15	0	28	1.40
33877--33927	25	2.0	27	88	7	79	1	37	0	60	1.08
33890--33941	15	3.5	15	89	2	79	0	38	0	61	0.96
34425--34496	32	2.3	31	88	4	101	18	38	25	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36062--36124	31	2.0	31	100	0	126	31	19	33	15	1.93
37685--37724	21	1.9	21	85	10	55	50	7	10	32	1.64
39281--39315	15	2.3	15	95	0	61	5	37	0	57	1.23
40291--40361	34	2.1	33	86	2	97	22	29	15	32	1.95
40573--40612	21	1.9	22	90	10	66	12	10	40	37	1.77
41601--41634	15	2.2	16	89	5	52	26	14	26	32	1.95

Tables:   1

The End!