Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008531.1 Hibiscus syriacus cultivar Beakdansim tig00111409_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3817888
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 19
Found at i:270074 original size:3 final size:3
Alignment explanation
Indices: 270066--270126 Score: 90
Period size: 3 Copynumber: 20.7 Consensus size: 3
270056 GCTTAAAATA
270066 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
270112 CTAG TAT TAT TAT TA
1 -TAT TAT TAT TAT TA
270127 CATTATTTTA
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
2 3 0.06
3 50 0.94
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:270119 original size:29 final size:29
Alignment explanation
Indices: 270069--270137 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
270059 TAAAATATAT
*
270069 TATTATTATTATTATTATTATTATTATTA
1 TATTATTATTATTATTAGTATTATTATTA
270098 TATTATTATTATT-TCTAGTATTATTATTA
1 TATTATTATTATTAT-TAGTATTATTATTA
*
270127 CATTATT-TTAT
1 TATTATTATTAT
270138 GTAGGCCTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 5 0.14
29 32 0.86
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (29 bp):
TATTATTATTATTATTAGTATTATTATTA
Found at i:272018 original size:2 final size:2
Alignment explanation
Indices: 272011--272056 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
272001 TAGAAAATAG
272011 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
272053 AT AT
1 AT AT
272057 GTGTGTGTGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:275180 original size:15 final size:14
Alignment explanation
Indices: 275139--275183 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
275129 CGATATTAGC
275139 ATTTAAT-TATTGAT
1 ATTTAATATATT-AT
275153 A-TTAATATATTAT
1 ATTTAATATATTAT
275166 ATTTAATAGTATTAT
1 ATTTAATA-TATTAT
275181 ATT
1 ATT
275184 ACCTTATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 8 0.29
14 11 0.39
15 9 0.32
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (14 bp):
ATTTAATATATTAT
Found at i:276011 original size:20 final size:20
Alignment explanation
Indices: 275986--276024 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
275976 TAAAAGTTTC
275986 TATTGAATTTGAAATATTTT
1 TATTGAATTTGAAATATTTT
276006 TATTGAATTTGAAATATTT
1 TATTGAATTTGAAATATTT
276025 AAAAAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.54
Consensus pattern (20 bp):
TATTGAATTTGAAATATTTT
Found at i:286456 original size:37 final size:38
Alignment explanation
Indices: 286387--286459 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
286377 GACCTGACCT
*
286387 GACTCGAATATCACACTTAAAAAAATCCGACCCGACTC
1 GACTCAAATATCACACTTAAAAAAATCCGACCCGACTC
* *
286425 GACTCAAATATTACACTTAAAAAACT-CGACCCGAC
1 GACTCAAATATCACACTTAAAAAAATCCGACCCGAC
286460 CTGAAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 9 0.28
38 23 0.72
ACGTcount: A:0.41, C:0.30, G:0.10, T:0.19
Consensus pattern (38 bp):
GACTCAAATATCACACTTAAAAAAATCCGACCCGACTC
Found at i:286471 original size:37 final size:38
Alignment explanation
Indices: 286393--286471 Score: 90
Period size: 38 Copynumber: 2.1 Consensus size: 38
286383 ACCTGACTCG
***
286393 AATATCACACTTAAAAAAATCCGACCCGACTCGACTCA
1 AATATCACACTTAAAAAAATCCGACCCGACTCGAAAAA
* *
286431 AATATTACACTTAAAAAACT-CGACCCGAC-CTGAAAAA
1 AATATCACACTTAAAAAAATCCGACCCGACTC-GAAAAA
286468 AATA
1 AATA
286472 AAGTTTCATC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
36 1 0.03
37 16 0.46
38 18 0.51
ACGTcount: A:0.47, C:0.27, G:0.08, T:0.19
Consensus pattern (38 bp):
AATATCACACTTAAAAAAATCCGACCCGACTCGAAAAA
Found at i:286703 original size:36 final size:38
Alignment explanation
Indices: 286635--286707 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
286625 AACCCGAAAC
*
286635 CGACCCGAATATCACACTTAAAAAAACCCGACCCGACT
1 CGACCCAAATATCACACTTAAAAAAACCCGACCCGACT
286673 CGACCCAAATATCACACTT-AAAAAA-CCGACCCGAC
1 CGACCCAAATATCACACTTAAAAAAACCCGACCCGAC
286708 CCGAACAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 10 0.29
37 6 0.18
38 18 0.53
ACGTcount: A:0.41, C:0.37, G:0.10, T:0.12
Consensus pattern (38 bp):
CGACCCAAATATCACACTTAAAAAAACCCGACCCGACT
Found at i:286719 original size:36 final size:38
Alignment explanation
Indices: 286642--286719 Score: 115
Period size: 36 Copynumber: 2.1 Consensus size: 38
286632 AACCGACCCG
* * *
286642 AATATCACACTTAAAAAAACCCGACCCGACTCGACCCA
1 AATATCACACTTAAAAAAACCCGACCCGACCCGAACAA
286680 AATATCACACTT-AAAAAA-CCGACCCGACCCGAACAA
1 AATATCACACTTAAAAAAACCCGACCCGACCCGAACAA
286716 AATA
1 AATA
286720 AAGTTTCATC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 19 0.51
37 6 0.16
38 12 0.32
ACGTcount: A:0.46, C:0.33, G:0.08, T:0.13
Consensus pattern (38 bp):
AATATCACACTTAAAAAAACCCGACCCGACCCGAACAA
Found at i:286808 original size:253 final size:248
Alignment explanation
Indices: 286391--286883 Score: 754
Period size: 253 Copynumber: 2.0 Consensus size: 248
286381 TGACCTGACT
* * *
286391 CGAATATCACACTTAAAAAAATCCGACCCGACTCGACTCAAATATTACACTTAAAAAACTCGACC
1 CGAATATCACACTTAAAAAAACCCGACCCGACTCGACCCAAATATCACACTTAAAAAACTCGACC
* ** * * *
286456 CGACCTGAAAAAAATAAAGTTTCATCCGACCTTACTCGAATATATGAATTAGAAATCCGACCCGA
66 CGACCCGAAAAAAATAAAGTTTCATCCGACCCGACCCGAAAATATGAATTAGAAATCCAACCCGA
* *
286521 CCCGAAATAATAAAAAATTATTTTTATTTAATAAAAACAGTAACTTAATCCGACCCGACCCGAAT
131 CCCGAAATAATAAAAAATTATTTTTATTTAATAAAAACAATAACTTAATACGACCCGACCCGAAT
* *
286586 TATATATATTTTCGGGTCGGTCCGGCTTTTTTCACCCTAAACCCGAAACCGACC
196 TATATATATTTTCAGGTCGGTCCGACTTTTTTCACCC-AAACCCGAAACCGACC
286640 CGAATATCACACTTAAAAAAACCCGACCCGACTCGACCCAAATATCACACTTAAAAAAC-CGACC
1 CGAATATCACACTTAAAAAAACCCGACCCGACTCGACCCAAATATCACACTTAAAAAACTCGACC
*
286704 CGACCCGAACAAAATAAAGTTTCATCCGACCCGACCCGAAAATATGAATTAGAAATCCAACCCAA
66 CGACCCGAAAAAAATAAAGTTTCATCCGACCCGACCCGAAAATATGAATTAGAAAT-----CCAA
* *
286769 CCCGACCCGAAATAATAAAAAATTATTTTTATTTAATAAAAACAATGACTTAATACGACTCGACC
126 CCCGACCCGAAATAATAAAAAATTATTTTTATTTAATAAAAACAATAACTTAATACGACCCGACC
* * *
286834 TGAATTATATATATTTTCAGGTCGGTCCGATTTTTTTCACCCGAACCCGA
191 CGAATTATATATATTTTCAGGTCGGTCCGACTTTTTTCACCCAAACCCGA
286884 CCCGACCAAA
Statistics
Matches: 220, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
248 55 0.25
249 56 0.25
252 7 0.03
253 102 0.46
ACGTcount: A:0.39, C:0.26, G:0.11, T:0.24
Consensus pattern (248 bp):
CGAATATCACACTTAAAAAAACCCGACCCGACTCGACCCAAATATCACACTTAAAAAACTCGACC
CGACCCGAAAAAAATAAAGTTTCATCCGACCCGACCCGAAAATATGAATTAGAAATCCAACCCGA
CCCGAAATAATAAAAAATTATTTTTATTTAATAAAAACAATAACTTAATACGACCCGACCCGAAT
TATATATATTTTCAGGTCGGTCCGACTTTTTTCACCCAAACCCGAAACCGACC
Found at i:293318 original size:18 final size:18
Alignment explanation
Indices: 293261--293318 Score: 50
Period size: 18 Copynumber: 3.2 Consensus size: 18
293251 TTCATTTGGG
293261 GTTATCATGATTCAAGAT
1 GTTATCATGATTCAAGAT
* *
293279 GTTACTATATGCGTTC-AG--
1 GTTA-T-CATG-ATTCAAGAT
293297 GTTATCATGATTCAAGAT
1 GTTATCATGATTCAAGAT
293315 GTTA
1 GTTA
293319 CCAGATTCCC
Statistics
Matches: 30, Mismatches: 4, Indels: 12
0.65 0.09 0.26
Matches are distributed among these distances:
15 3 0.10
16 5 0.17
17 1 0.03
18 12 0.40
19 1 0.03
20 5 0.17
21 3 0.10
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (18 bp):
GTTATCATGATTCAAGAT
Found at i:295343 original size:115 final size:115
Alignment explanation
Indices: 295192--295672 Score: 390
Period size: 117 Copynumber: 4.1 Consensus size: 115
295182 TTTGGACGAG
* * * * * *
295192 TTCTCAATATGAACT-CTCATTGAAAATGTTGATCCACCTAC-TTCTGTGATAGGTTTGAACAAA
1 TTCTCATTATGAACTCCCCATTGAAAATGTTGGTCCACCTACATTCTATGATTGATTTGAACAAA
* * ** *
295255 AGGTCGAACAAGTTTTTCTCAGAATGAACTTCTCCCTCTTTGGACGAGTTT
66 AGGTCAAACAAGTTCTTCTCATTATGAACTTCTCCCTCTTTGGATGAG-TT
* * * * *
295306 TTCTCATTATTAACTCCCCATTGAAAATGTTGGTCCACCTA-TTTTTATGATTGACTTGAGCAAA
1 TTCTCATTATGAACTCCCCATTGAAAATGTTGGTCCACCTACATTCTATGATTGATTTGAAC-AA
**
295370 AAGGTCAAACAAGTTCTTCTCATTATGAGTTTTTTCTCCCTCTTTGGATGAG--
65 AAGGTCAAACAAGTTCTTCTCATTATGA---ACTTCTCCCTCTTTGGATGAGTT
* * * * *
295422 TTCTCATTATGAACTCTCCATTGAAAATGTTTGTCCTCCT-CTTTCTATGATGGATTT-AAGCAA
1 TTCTCATTATGAACTCCCCATTGAAAATGTTGGTCCACCTACATTCTATGATTGATTTGAA-CAA
** * * *
295485 AAAATCAAACTAGATCTTCTTATTATGAACTTTTTCTCCCTCTTTGGATGAGTT
65 AAGGTCAAACAAGTTCTTCTCATTATGAAC---TTCTCCCTCTTTGGATGAGTT
* * * * *
295539 CTTCCCATTATGAACTCTCCATTG-AAATGTTAGTCCA-CTTCATTCTGTG-TTGAATTTGATA-
1 -TTCTCATTATGAACTCCCCATTGAAAATGTTGGTCCACCTACATTCTATGATTG-ATTTGA-AC
* * * * * *
295600 AAAATGTCGAACAAGTTCTTCTCATTTTGAACTTTTTCTCTCTCTTTAGATGAATT
63 AAAAGGTCAAACAAGTTCTTCTCATTATGAAC---TTCTCCCTCTTTGGATGAGTT
295656 CTTCTCATTATGAACTC
1 -TTCTCATTATGAACTC
295673 TCTTTGAAAA
Statistics
Matches: 300, Mismatches: 49, Indels: 33
0.79 0.13 0.09
Matches are distributed among these distances:
114 13 0.04
115 81 0.27
116 80 0.27
117 84 0.28
118 23 0.08
119 19 0.06
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (115 bp):
TTCTCATTATGAACTCCCCATTGAAAATGTTGGTCCACCTACATTCTATGATTGATTTGAACAAA
AGGTCAAACAAGTTCTTCTCATTATGAACTTCTCCCTCTTTGGATGAGTT
Found at i:295646 original size:117 final size:117
Alignment explanation
Indices: 295148--295682 Score: 469
Period size: 116 Copynumber: 4.6 Consensus size: 117
295138 ATCTAAAGTT
* *** * * *
295148 GAACAAGCTCTTCT-A-TATGAACTTTTTCTTTTTTTTTGGACGAGTTC-T-CAATATGAACTCT
1 GAACAAGTTCTTCTCATTATGAACTTTTTCTCCCTCTTTGGATGAGTTCTTCCATTATGAACTCT
* * *
295209 -CATTGAAAATGTTGATCCACCTACTTCTGTGAT-AGGTTTGAAC-AAAAGGTC
66 CCATTGAAAATGTTG-TCCACCTACTTCTATGATGA-ATTTGAGCAAAAAGGTC
* ** * * *
295260 GAACAAGTTTTTCTCAGAATGAAC---TTCTCCCTCTTTGGACGAGTTTTTCTCATTATTAACTC
1 GAACAAGTTCTTCTCATTATGAACTTTTTCTCCCTCTTTGGATGAGTTCTTC-CATTATGAACTC
* * * *
295322 CCCATTGAAAATGTTGGTCCACCTATTTTTATGATTG-ACTTGAGCAAAAAGGTC
65 TCCATTGAAAATGTT-GTCCACCTACTTCTATGA-TGAATTTGAGCAAAAAGGTC
* **
295376 AAACAAGTTCTTCTCATTATGAGTTTTTTCTCCCTCTTTGGATGAGTTC-T-CATTATGAACTCT
1 GAACAAGTTCTTCTCATTATGAACTTTTTCTCCCTCTTTGGATGAGTTCTTCCATTATGAACTCT
* * * *
295439 CCATTGAAAATGTTTGTCCTCCT-CTTTCTATGATGGATTTAAGCAAAAA-ATC
66 CCATTGAAAATG-TTGTCCACCTAC-TTCTATGATGAATTTGAGCAAAAAGGTC
* * * *
295491 AAACTAGATCTTCTTATTATGAACTTTTTCTCCCTCTTTGGATGAGTTCTTCCCATTATGAACTC
1 GAACAAGTTCTTCTCATTATGAACTTTTTCTCCCTCTTTGGATGAGTTCTT-CCATTATGAACTC
* * * * *
295556 TCCATTG-AAATGTTAGTCCA-CTTCATTCTGTGTTGAATTTGA-TAAAAATGTC
65 TCCATTGAAAATGTT-GTCCACCTAC-TTCTATGATGAATTTGAGCAAAAAGGTC
* * * *
295608 GAACAAGTTCTTCTCATTTTGAACTTTTTCTCTCTCTTTAGATGAATTCTTCTCATTATGAACTC
1 GAACAAGTTCTTCTCATTATGAACTTTTTCTCCCTCTTTGGATGAGTTCTTC-CATTATGAACTC
*
295673 T-CTTTGAAAA
65 TCCATTGAAAA
295683 GGATTGGTCA
Statistics
Matches: 344, Mismatches: 55, Indels: 43
0.78 0.12 0.10
Matches are distributed among these distances:
111 17 0.05
112 13 0.04
113 1 0.00
114 16 0.05
115 80 0.23
116 91 0.26
117 86 0.25
118 20 0.06
119 20 0.06
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (117 bp):
GAACAAGTTCTTCTCATTATGAACTTTTTCTCCCTCTTTGGATGAGTTCTTCCATTATGAACTCT
CCATTGAAAATGTTGTCCACCTACTTCTATGATGAATTTGAGCAAAAAGGTC
Found at i:295714 original size:117 final size:117
Alignment explanation
Indices: 295367--295714 Score: 303
Period size: 117 Copynumber: 3.0 Consensus size: 117
295357 TGACTTGAGC
* * ** * *
295367 AAAAAGGTCAAACAAGTTCTTCTCATTATGAGTTTTTTCTCCCTCTTTGGATGAGTTC-T--CAT
1 AAAAATGTCGAACAAGTTCTTCTCATTATGAACTTTTTCTCCCTCTTTAGATGAATTCTTCCCAT
* * ** * * * * * *
295429 TATGAACTCTCCATTGAAAATGTTTGTCCTCCTCTTTCTATGATGGATTTAAGC
66 TATGAACTCTCCATTG-AAAGGTTAGTCAACCTCATTCTGTGAAGAATTTGA-T
* * * * * * *
295483 AAAAA-ATCAAACTAGATCTTCTTATTATGAACTTTTTCTCCCTCTTTGGATGAGTTCTTCCCAT
1 AAAAATGTCGAACAAGTTCTTCTCATTATGAACTTTTTCTCCCTCTTTAGATGAATTCTTCCCAT
* * * **
295547 TATGAACTCTCCATTGAAATGTTAGTCCACTTCATTCTGTGTTGAATTTGAT
66 TATGAACTCTCCATTGAAAGGTTAGTCAACCTCATTCTGTGAAGAATTTGAT
* * *
295599 AAAAATGTCGAACAAGTTCTTCTCATTTTGAACTTTTTCTCTCTCTTTAGATGAATTCTTCTCAT
1 AAAAATGTCGAACAAGTTCTTCTCATTATGAACTTTTTCTCCCTCTTTAGATGAATTCTTCCCAT
* * * *
295664 TATGAACTCT-CTTTGAAAAGGATTGGTCAACCTC-TTCTTTGAAGACTTTGA
66 TATGAACTCTCCATTG-AAAGG-TTAGTCAACCTCATTCTGTGAAGAATTTGA
295715 ACTTGTAAAA
Statistics
Matches: 192, Mismatches: 34, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
115 46 0.24
116 15 0.08
117 103 0.54
118 28 0.15
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (117 bp):
AAAAATGTCGAACAAGTTCTTCTCATTATGAACTTTTTCTCCCTCTTTAGATGAATTCTTCCCAT
TATGAACTCTCCATTGAAAGGTTAGTCAACCTCATTCTGTGAAGAATTTGAT
Found at i:298030 original size:16 final size:16
Alignment explanation
Indices: 298009--298042 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
297999 CGTTTTTCTT
298009 TTATTTCTTCATTTTC
1 TTATTTCTTCATTTTC
*
298025 TTATTTCTTCCTTTTC
1 TTATTTCTTCATTTTC
298041 TT
1 TT
298043 TTCTTTTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.71
Consensus pattern (16 bp):
TTATTTCTTCATTTTC
Found at i:299927 original size:94 final size:94
Alignment explanation
Indices: 299810--300023 Score: 238
Period size: 94 Copynumber: 2.3 Consensus size: 94
299800 ATCGAACCTG
* *
299810 GGAAAATTGATGATTTGT-TCCACCGTCTCTTTC-TAGAGAACAAATCTAGAAAGATGATAATTC
1 GGAAAATTGATGATTT-TCTCCACCATCT-TTTCATAGAGAACAAATCTAGAAAAATGATAATTC
* * *
299873 AC-TCAAATGTCTCTTTGAT-AAGGATGAATAT
64 ACTTC-AATGTCGC-TTCATGAAGCATGAATAT
* * * * *
299904 GGAAAATTGATGATTTTCTCCACCATCTTTTCATGGGGATCAAATCTGGAAAAATGATGATTCAC
1 GGAAAATTGATGATTTTCTCCACCATCTTTTCATAGAGAACAAATCTAGAAAAATGATAATTCAC
* * *
299969 TTCATTGTCGCTTCATGAATCATGAATCT
66 TTCAATGTCGCTTCATGAAGCATGAATAT
*
299998 AGAAAATTGATGATTTTCTCCACCAT
1 GGAAAATTGATGATTTTCTCCACCAT
300024 TTCTTCGTGA
Statistics
Matches: 102, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
93 9 0.09
94 91 0.89
95 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (94 bp):
GGAAAATTGATGATTTTCTCCACCATCTTTTCATAGAGAACAAATCTAGAAAAATGATAATTCAC
TTCAATGTCGCTTCATGAAGCATGAATAT
Found at i:304930 original size:20 final size:20
Alignment explanation
Indices: 304905--304952 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
304895 GGGTGATATT
304905 GATACTGCTAAGACAACACC
1 GATACTGCTAAGACAACACC
**
304925 GATACTGCTAAGACAGTACC
1 GATACTGCTAAGACAACACC
304945 GATACTGC
1 GATACTGC
304953 CTGTAGGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (20 bp):
GATACTGCTAAGACAACACC
Found at i:311629 original size:26 final size:25
Alignment explanation
Indices: 311579--311636 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 25
311569 TTGGTATTTC
311579 TTTTATGCTTTGGATGGTTAGATTGA
1 TTTTATGCTTTGGATGGTTA-ATTGA
*
311605 TTTTATGCTCTATGGATGGTTATTGTGA
1 TTTTATGCT-T-TGGATGGTTAAT-TGA
311633 TTTT
1 TTTT
311637 TTATAATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 9 0.32
27 2 0.07
28 17 0.61
ACGTcount: A:0.17, C:0.05, G:0.24, T:0.53
Consensus pattern (25 bp):
TTTTATGCTTTGGATGGTTAATTGA
Found at i:314113 original size:15 final size:15
Alignment explanation
Indices: 314095--314129 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
314085 AGGATCTTGA
314095 GTTTCCTCATCTTTC
1 GTTTCCTCATCTTTC
*
314110 GTTTCCTCATCTTTT
1 GTTTCCTCATCTTTC
314125 GTTTC
1 GTTTC
314130 TTCCTTTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.06, C:0.29, G:0.09, T:0.57
Consensus pattern (15 bp):
GTTTCCTCATCTTTC
Found at i:324129 original size:24 final size:24
Alignment explanation
Indices: 324102--324153 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
324092 AACGGATATA
*
324102 TCAAAAATCAAAACATAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
** * *
324126 TCAAGTATCATATCAGAAATCAGG
1 TCAAAAATCAAAACAGAAATCAGG
324150 TCAA
1 TCAA
324154 GTAACATATC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.17, G:0.12, T:0.21
Consensus pattern (24 bp):
TCAAAAATCAAAACAGAAATCAGG
Found at i:324216 original size:24 final size:24
Alignment explanation
Indices: 324125--324216 Score: 123
Period size: 24 Copynumber: 3.8 Consensus size: 24
324115 CATAAATCAG
* *
324125 GTCAAGTATCATATCAGAAAT-CAG
1 GTCAAGTATCAGATCAG-AATCCAA
* *
324149 GTCAAGTAACATATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAA
*
324173 GTCAAGTATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAA
324197 GTCAAGTATCAGATCAGAAT
1 GTCAAGTATCAGATCAGAAT
324217 TCAAATCGAA
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
23 3 0.05
24 59 0.95
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.24
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAA
Found at i:324232 original size:48 final size:48
Alignment explanation
Indices: 324126--324234 Score: 114
Period size: 48 Copynumber: 2.3 Consensus size: 48
324116 ATAAATCAGG
* * * *
324126 TCAAGTATCATATCAGAAATCAGGTCAAGTAACATATCAGAATCCAAG
1 TCAAGAATCAGATCAGAAATCAGGTCAAGTAACAGATCAGAATCCAAA
* * * *
324174 TCAAGTATCAGATCAG-AATCCATGTCAAGTATCAGATCAGAATTCAAA
1 TCAAGAATCAGATCAGAAAT-CAGGTCAAGTAACAGATCAGAATCCAAA
324222 TCGAA-AATCAGAT
1 TC-AAGAATCAGAT
324235 AAAATATTCA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 3 0.06
48 47 0.90
49 2 0.04
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (48 bp):
TCAAGAATCAGATCAGAAATCAGGTCAAGTAACAGATCAGAATCCAAA
Found at i:326717 original size:18 final size:18
Alignment explanation
Indices: 326694--326733 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
326684 GCGGTTAACA
*
326694 GTCAACGGGTCGGGTCGG
1 GTCAACGAGTCGGGTCGG
326712 GTCAACGAGTCGGGTCGG
1 GTCAACGAGTCGGGTCGG
326730 GTCA
1 GTCA
326734 GGTTATGACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.15, C:0.23, G:0.45, T:0.17
Consensus pattern (18 bp):
GTCAACGAGTCGGGTCGG
Found at i:328840 original size:24 final size:24
Alignment explanation
Indices: 328813--328906 Score: 116
Period size: 24 Copynumber: 3.9 Consensus size: 24
328803 AACATAAATG
* *
328813 AGGTCAAGTATCATATCAGAAACC
1 AGGTCAAGTATCAGATCAGAATCC
*
328837 AGGTCAAGTAACAGATCAGAATCC
1 AGGTCAAGTATCAGATCAGAATCC
* * *
328861 AAGTCAAGTTTTAGATCAGAATCC
1 AGGTCAAGTATCAGATCAGAATCC
* *
328885 ATGTCAAGTATTAGATCAGAAT
1 AGGTCAAGTATCAGATCAGAAT
328907 TCAAATCGAA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.24
Consensus pattern (24 bp):
AGGTCAAGTATCAGATCAGAATCC
Found at i:331407 original size:18 final size:18
Alignment explanation
Indices: 331384--331422 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
331374 CGGTCAACGA
331384 GTCAACGGGTCGGGTCGG
1 GTCAACGGGTCGGGTCGG
331402 GTCAACGGGTCGGGTCGG
1 GTCAACGGGTCGGGTCGG
331420 GTC
1 GTC
331423 GGGTTATGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.10, C:0.23, G:0.49, T:0.18
Consensus pattern (18 bp):
GTCAACGGGTCGGGTCGG
Found at i:333509 original size:24 final size:24
Alignment explanation
Indices: 333482--333581 Score: 74
Period size: 24 Copynumber: 4.2 Consensus size: 24
333472 TATATCAAAA
* *
333482 ATCAAAACATAAATCAGGTCAAGT
1 ATCAAAACAGAAACCAGGTCAAGT
* * *
333506 ATCATATCAGAAACCAGGTCAAGA
1 ATCAAAACAGAAACCAGGTCAAGT
* * * * *
333530 AACAGATCAGAATCCAAGTCAAGT
1 ATCAAAACAGAAACCAGGTCAAGT
* * * *
333554 ATCAGATCAGAATCCATGTCAAGT
1 ATCAAAACAGAAACCAGGTCAAGT
333578 ATCA
1 ATCA
333582 GATCAGAATT
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 64 1.00
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.20
Consensus pattern (24 bp):
ATCAAAACAGAAACCAGGTCAAGT
Found at i:333582 original size:24 final size:24
Alignment explanation
Indices: 333499--333590 Score: 130
Period size: 24 Copynumber: 3.8 Consensus size: 24
333489 CATAAATCAG
* * *
333499 GTCAAGTATCATATCAGAAACCAG
1 GTCAAGTATCAGATCAGAATCCAA
* *
333523 GTCAAGAAACAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAA
*
333547 GTCAAGTATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAA
333571 GTCAAGTATCAGATCAGAAT
1 GTCAAGTATCAGATCAGAAT
333591 TCAAATCGAA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 60 1.00
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.21
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAA
Found at i:333606 original size:48 final size:48
Alignment explanation
Indices: 333500--333608 Score: 121
Period size: 48 Copynumber: 2.3 Consensus size: 48
333490 ATAAATCAGG
* * *
333500 TCAAGTATCATATCAGAAACCAGGTCAAGAAACAGATCAGAATCCAAG
1 TCAAGAATCAGATCAGAAACCAGGTCAAGAAACAGATCAGAATCCAAA
* * * * * *
333548 TCAAGTATCAGATCAGAATCCATGTCAAGTATCAGATCAGAATTCAAA
1 TCAAGAATCAGATCAGAAACCAGGTCAAGAAACAGATCAGAATCCAAA
333596 TCGAA-AATCAGAT
1 TC-AAGAATCAGAT
333609 AAAATATTCA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
48 50 0.96
49 2 0.04
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (48 bp):
TCAAGAATCAGATCAGAAACCAGGTCAAGAAACAGATCAGAATCCAAA
Found at i:336158 original size:7 final size:7
Alignment explanation
Indices: 336146--336187 Score: 84
Period size: 7 Copynumber: 6.0 Consensus size: 7
336136 TGCACCAAAA
336146 CTAAACC
1 CTAAACC
336153 CTAAACC
1 CTAAACC
336160 CTAAACC
1 CTAAACC
336167 CTAAACC
1 CTAAACC
336174 CTAAACC
1 CTAAACC
336181 CTAAACC
1 CTAAACC
336188 AGTTAACTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (7 bp):
CTAAACC
Found at i:338030 original size:24 final size:23
Alignment explanation
Indices: 338003--338107 Score: 93
Period size: 24 Copynumber: 4.4 Consensus size: 23
337993 TATATAAAAA
*
338003 ATCAAAACATAAATCAGGTCAAGT
1 ATCAAATCA-AAATCAGGTCAAGT
*
338027 ATCATATCAGAAATCAGGTCAAGT
1 ATCAAATCA-AAATCAGGTCAAGT
* * *
338051 AACAGATCAAAATCCAAGTCAAGT
1 ATCAAATCAAAAT-CAGGTCAAGT
* * *
338075 ATCAGATCAGAATCCATGTCAAGT
1 ATCAAATCAAAAT-CAGGTCAAGT
*
338099 ATCAGATCA
1 ATCAAATCA
338108 GAATTCAAAT
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
23 4 0.06
24 67 0.94
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.22
Consensus pattern (23 bp):
ATCAAATCAAAATCAGGTCAAGT
Found at i:338108 original size:24 final size:24
Alignment explanation
Indices: 338020--338111 Score: 123
Period size: 24 Copynumber: 3.8 Consensus size: 24
338010 CATAAATCAG
* *
338020 GTCAAGTATCATATCAGAAAT-CAG
1 GTCAAGTATCAGATCAG-AATCCAA
* *
338044 GTCAAGTAACAGATCAAAATCCAA
1 GTCAAGTATCAGATCAGAATCCAA
*
338068 GTCAAGTATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAA
338092 GTCAAGTATCAGATCAGAAT
1 GTCAAGTATCAGATCAGAAT
338112 TCAAATCGAA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
23 3 0.05
24 57 0.95
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.23
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAA
Found at i:338127 original size:48 final size:48
Alignment explanation
Indices: 338021--338129 Score: 114
Period size: 48 Copynumber: 2.3 Consensus size: 48
338011 ATAAATCAGG
* * *
338021 TCAAGTATCATATCAGAAATCAGGTCAAGTAACAGATCAAAATCCAAG
1 TCAAGAATCAGATCAGAAATCAGGTCAAGTAACAGATCAAAATCCAAA
* * * * *
338069 TCAAGTATCAGATCAG-AATCCATGTCAAGTATCAGATCAGAATTCAAA
1 TCAAGAATCAGATCAGAAAT-CAGGTCAAGTAACAGATCAAAATCCAAA
338117 TCGAA-AATCAGAT
1 TC-AAGAATCAGAT
338130 AAAATATTCA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 3 0.06
48 47 0.90
49 2 0.04
ACGTcount: A:0.44, C:0.18, G:0.15, T:0.23
Consensus pattern (48 bp):
TCAAGAATCAGATCAGAAATCAGGTCAAGTAACAGATCAAAATCCAAA
Found at i:342433 original size:24 final size:24
Alignment explanation
Indices: 342406--342505 Score: 69
Period size: 24 Copynumber: 4.2 Consensus size: 24
342396 TATATCAAAA
*
342406 ATCAAAACATAAATCAGGTCAAGT
1 ATCAAAACAGAAATCAGGTCAAGT
* * *
342430 ATCATATCAGAAATTAGGTCAAGT
1 ATCAAAACAGAAATCAGGTCAAGT
* * * *
342454 AACATATCAG-AATCCAAGTCAAGT
1 ATCAAAACAGAAAT-CAGGTCAAGT
* * *
342478 ATCAGATCA-AAATCCATGTCAAGT
1 ATCAAAACAGAAAT-CAGGTCAAGT
342502 ATCA
1 ATCA
342506 GATCAGAATT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
23 3 0.05
24 61 0.95
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.24
Consensus pattern (24 bp):
ATCAAAACAGAAATCAGGTCAAGT
Found at i:342499 original size:48 final size:48
Alignment explanation
Indices: 342423--342514 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
342413 CATAAATCAG
* * *
342423 GTCAAGTATCATATCAGAAATTAGGTCAAGTAACATATCAGAATCCAA
1 GTCAAGTATCAGATCAGAAATCAGGTCAAGTAACAGATCAGAATCCAA
* *
342471 GTCAAGTATCAGATCA-AAATCCATGTCAAGTATCAGATCAGAAT
1 GTCAAGTATCAGATCAGAAAT-CAGGTCAAGTAACAGATCAGAAT
342515 TCAAATCGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
47 4 0.11
48 34 0.89
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.25
Consensus pattern (48 bp):
GTCAAGTATCAGATCAGAAATCAGGTCAAGTAACAGATCAGAATCCAA
Found at i:342506 original size:24 final size:24
Alignment explanation
Indices: 342423--342510 Score: 97
Period size: 24 Copynumber: 3.7 Consensus size: 24
342413 CATAAATCAG
* * *
342423 GTCAAGTATCATATCAGAAAT-TAG
1 GTCAAGTATCAGATCA-AAATCCAA
* * *
342447 GTCAAGTAACATATCAGAATCCAA
1 GTCAAGTATCAGATCAAAATCCAA
*
342471 GTCAAGTATCAGATCAAAATCCAT
1 GTCAAGTATCAGATCAAAATCCAA
342495 GTCAAGTATCAGATCA
1 GTCAAGTATCAGATCA
342511 GAATTCAAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
23 3 0.05
24 52 0.95
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (24 bp):
GTCAAGTATCAGATCAAAATCCAA
Found at i:342530 original size:48 final size:47
Alignment explanation
Indices: 342447--342537 Score: 112
Period size: 48 Copynumber: 1.9 Consensus size: 47
342437 CAGAAATTAG
* * *
342447 GTCAAGTAACATATCAGAATCCAAGTCAAGTATCAGATCAAAATCCAT
1 GTCAAGTAACAGATCAGAATCCAAATCAAGAATCAGAT-AAAATCCAT
* *
342495 GTCAAGTATCAGATCAGAATTCAAATCGAA-AATCAGATAAAAT
1 GTCAAGTAACAGATCAGAATCCAAATC-AAGAATCAGATAAAAT
342538 ATTCATGTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
47 5 0.14
48 30 0.81
49 2 0.05
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.23
Consensus pattern (47 bp):
GTCAAGTAACAGATCAGAATCCAAATCAAGAATCAGATAAAATCCAT
Found at i:344492 original size:17 final size:19
Alignment explanation
Indices: 344456--344494 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
344446 ACATAATCAA
344456 ATATTTTGAATGCACAACAT
1 ATATTTTGAA-GCACAACAT
344476 ATATTTTGAA-C-CAACAT
1 ATATTTTGAAGCACAACAT
344493 AT
1 AT
344495 CAACATAGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 1 0.05
20 10 0.53
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (19 bp):
ATATTTTGAAGCACAACAT
Found at i:346280 original size:30 final size:30
Alignment explanation
Indices: 346244--346309 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
346234 AGAACCGGTA
* *
346244 GAACCGGTTGAGAACCGGCAAAACTAGG-GT
1 GAACCGGCTGAAAACCGGCAAAA-TAGGTGT
* *
346274 GAACCGGCTGAAAACTGGCAAAATCGGTGT
1 GAACCGGCTGAAAACCGGCAAAATAGGTGT
346304 GAACCG
1 GAACCG
346310 TCGGTTCTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 3 0.10
30 28 0.90
ACGTcount: A:0.33, C:0.21, G:0.32, T:0.14
Consensus pattern (30 bp):
GAACCGGCTGAAAACCGGCAAAATAGGTGT
Found at i:347008 original size:2 final size:2
Alignment explanation
Indices: 347003--347034 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
346993 TAAAAAAATG
347003 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
347035 TAATATTGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:349033 original size:87 final size:85
Alignment explanation
Indices: 348888--349077 Score: 229
Period size: 86 Copynumber: 2.2 Consensus size: 85
348878 AAAATGATGC
* * * * * * *
348888 TAAATGTTGTGATATATATCAATGTTTTTCTGAAAACGCCCCAACATATTTGGTTATATAGTGGT
1 TAAATGTCGTGATATATAACAATGTTTTTCTGAAAACACCACAACAAAATTGGTTATATAGTGGC
*
348953 GTTTTTGGGCACAAACGTAGA
66 ATTTTT-GGCACAAACGTAGA
*
348974 TAAATGTCATGATATATAACAAAT-TTTTCTCTGAAAACACCACAACAAAATTGGTTATATAGTG
1 TAAATGTCGTGATATATAAC-AATGTTTT-TCTGAAAACACCACAACAAAATTGGTTATATAGTG
* * * *
349038 GCATTTTTGGCATAAATGTTGC
64 GCATTTTTGGCACAAACGTAGA
349060 TAAATGTCGTGATATATA
1 TAAATGTCGTGATATATA
349078 GACACTTTTA
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
86 48 0.55
87 40 0.45
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (85 bp):
TAAATGTCGTGATATATAACAATGTTTTTCTGAAAACACCACAACAAAATTGGTTATATAGTGGC
ATTTTTGGCACAAACGTAGA
Found at i:351074 original size:22 final size:22
Alignment explanation
Indices: 351048--351100 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
351038 CAATAAACAA
351048 ACAACAATATTAGTAACTAGTT
1 ACAACAATATTAGTAACTAGTT
351070 ACAACAATATTAGTAACTAGTT
1 ACAACAATATTAGTAACTAGTT
351092 ACAACAATA
1 ACAACAATA
351101 CTATAATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.49, C:0.15, G:0.08, T:0.28
Consensus pattern (22 bp):
ACAACAATATTAGTAACTAGTT
Found at i:357623 original size:2 final size:2
Alignment explanation
Indices: 357616--357652 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
357606 TCAAAATACC
357616 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
357653 ATTACAATCG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:362272 original size:24 final size:23
Alignment explanation
Indices: 362228--362273 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 23
362218 GAATTTGATA
362228 TTAATAAAATATTTTAATATTATT
1 TTAATAAAATA-TTTAATATTATT
362252 TTAATCAAAATA-TTAATTATTA
1 TTAAT-AAAATATTTAA-TATTA
362274 AAATATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 4 0.20
24 10 0.50
25 6 0.30
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (23 bp):
TTAATAAAATATTTAATATTATT
Found at i:362372 original size:23 final size:23
Alignment explanation
Indices: 362326--362376 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
362316 AATATTTTTA
*
362326 ATATTATAATAAAATAATTAATT
1 ATATTATAATAAAATAAATAATT
*
362349 ATATTATAATAATATAAGAT-ATT
1 ATATTATAATAAAATAA-ATAATT
362372 ATATT
1 ATATT
362377 TTTATTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 24 0.96
24 1 0.04
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
ATATTATAATAAAATAAATAATT
Found at i:362405 original size:19 final size:18
Alignment explanation
Indices: 362372--362428 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
362362 ATAAGATATT
*
362372 ATATTTTTA-TTTTAATA
1 ATATTTATATTTTTAATA
362389 ATATTTAATATTTTTAATA
1 ATATTT-ATATTTTTAATA
* *
362408 AAATTTATATTATTTATTA
1 ATATTTATATT-TTTAATA
362427 AT
1 AT
362429 TTCATAGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
17 6 0.18
18 7 0.21
19 20 0.61
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATATTTATATTTTTAATA
Found at i:362483 original size:27 final size:27
Alignment explanation
Indices: 362437--362494 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
362427 ATTTCATAGA
362437 AATAATATTATTAAATTA-TTAATAATT
1 AATAATATTATTAAATTATTTAAT-ATT
*
362464 AATAATATTATT-TATATATTTAATATT
1 AATAATATTATTAAAT-TATTTAATATT
362491 AATA
1 AATA
362495 TAATAATCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 2 0.07
27 21 0.75
28 5 0.18
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (27 bp):
AATAATATTATTAAATTATTTAATATT
Found at i:368224 original size:81 final size:81
Alignment explanation
Indices: 368070--368224 Score: 229
Period size: 81 Copynumber: 1.9 Consensus size: 81
368060 CCGTTAGACA
* * *
368070 TTTAGTCTTTTACCCAAAGGCATTTAACCTTTCATCTAAGTGGCATGATTGACACCTTTCTGCCC
1 TTTAGTCTTTTACCCAAAGGCATTTAACCTTTCATATAACTGGCATGATTGACACCTTTCTGCCA
*
368135 AAGGCACAGATAAGTT
66 AAGACACAGATAAGTT
* * * *
368151 TTTAGTCTTTTGCTCAAAGGTATTTAACCTTTCATATAACTGGCATGATTGACACCTTTCTGTCA
1 TTTAGTCTTTTACCCAAAGGCATTTAACCTTTCATATAACTGGCATGATTGACACCTTTCTGCCA
*
368216 AATACACAG
66 AAGACACAG
368225 CTAGGCCATT
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (81 bp):
TTTAGTCTTTTACCCAAAGGCATTTAACCTTTCATATAACTGGCATGATTGACACCTTTCTGCCA
AAGACACAGATAAGTT
Found at i:368241 original size:81 final size:81
Alignment explanation
Indices: 368075--368241 Score: 199
Period size: 81 Copynumber: 2.1 Consensus size: 81
368065 AGACATTTAG
* * * *
368075 TCTTTTACCCAAAGGCATTTAACCTTTCATCTAAGTGGCATGATTGACACCTTTCTGCCCAAGGC
1 TCTTTTACCCAAAGGCATTTAACCTTTCATATAACTGGCATGATTGACACCTTTCTGCCAAAGAC
*** *
368140 ACAGATAAGTTTTTAG
66 ACAGATAAGCCATTAA
* * * * *
368156 TCTTTTGCTCAAAGGTATTTAACCTTTCATATAACTGGCATGATTGACACCTTTCTGTCAAATAC
1 TCTTTTACCCAAAGGCATTTAACCTTTCATATAACTGGCATGATTGACACCTTTCTGCCAAAGAC
* *
368221 ACAGCTAGGCCATTAA
66 ACAGATAAGCCATTAA
368237 TCTTT
1 TCTTT
368242 ATTTTATAAT
Statistics
Matches: 71, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (81 bp):
TCTTTTACCCAAAGGCATTTAACCTTTCATATAACTGGCATGATTGACACCTTTCTGCCAAAGAC
ACAGATAAGCCATTAA
Found at i:368642 original size:46 final size:46
Alignment explanation
Indices: 368585--368827 Score: 396
Period size: 46 Copynumber: 5.3 Consensus size: 46
368575 TTATTCGTTA
368585 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* * * *
368631 ATTTAATTTATGACATCCTTTCATGTCATAATGCATCCTTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
* *
368677 ATTTCATTTATGGCATCCTTTCATGGCTTAATGCATCTTTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
*
368723 ATTTCATTTATGGCAATCCTTTCATGCCTTAATGTATCCTTTCATGC
1 ATTTCATTTATGGC-ATCCTTTCATGCCTTAATGCATCCTTTCATGC
* *
368770 ATTTCATTTATGGCATCCTTTCATGCCTAAATGCATCATTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
368816 ATTTCATTTATG
1 ATTTCATTTATG
368828 AATTTGTTTT
Statistics
Matches: 181, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 138 0.76
47 43 0.24
ACGTcount: A:0.22, C:0.23, G:0.11, T:0.44
Consensus pattern (46 bp):
ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGC
Found at i:368793 original size:93 final size:92
Alignment explanation
Indices: 368585--368828 Score: 398
Period size: 93 Copynumber: 2.6 Consensus size: 92
368575 TTATTCGTTA
* *
368585 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTAATTTATGACATCCT
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATGACATCCT
*
368650 TTCATGTCATAATGCATCCTTTCATGC
66 TTCATGCCATAATGCATCCTTTCATGC
* * *
368677 ATTTCATTTATGGCATCCTTTCATGGCTTAATGCATCTTTTCATGCATTTCATTTATGGCAATCC
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATGAC-ATCC
* *
368742 TTTCATGCCTTAATGTATCCTTTCATGC
65 TTTCATGCCATAATGCATCCTTTCATGC
*
368770 ATTTCATTTATGGCATCCTTTCATGCCTAAATGCATCATTTCATGCATTTCATTTATGA
1 ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATGA
368829 ATTTGTTTTA
Statistics
Matches: 140, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
92 56 0.40
93 84 0.60
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.44
Consensus pattern (92 bp):
ATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTCATTTATGACATCCT
TTCATGCCATAATGCATCCTTTCATGC
Found at i:369325 original size:42 final size:41
Alignment explanation
Indices: 369251--369344 Score: 107
Period size: 42 Copynumber: 2.3 Consensus size: 41
369241 CCCCTACCAT
* * * **
369251 AGTATCGATACTTCTATACTATGTTACCGATACCTTTCTCTC
1 AGTATCGATACTACTACACTATGGTACCGATA-CTCCCTCTC
** *
369293 AGTATCGATACTACTACACTATGGTATTGATACTCCCTTTC
1 AGTATCGATACTACTACACTATGGTACCGATACTCCCTCTC
369334 AGTATCGATAC
1 AGTATCGATAC
369345 CATTTTGTCT
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 17 0.39
42 27 0.61
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (41 bp):
AGTATCGATACTACTACACTATGGTACCGATACTCCCTCTC
Found at i:371275 original size:11 final size:10
Alignment explanation
Indices: 371257--371287 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
371247 AGTAATTTGG
371257 AGAAAAAAAA
1 AGAAAAAAAA
371267 AGAAAAAAAA
1 AGAAAAAAAA
371277 AGAAAAAAAA
1 AGAAAAAAAA
371287 A
1 A
371288 TCATCATGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (10 bp):
AGAAAAAAAA
Found at i:373453 original size:46 final size:47
Alignment explanation
Indices: 373378--373466 Score: 119
Period size: 46 Copynumber: 1.9 Consensus size: 47
373368 ACCTTATGTA
* *
373378 ATATATATATTACTTTATGTCATACATATATATTTCA-TGTACGTGT
1 ATATATATATTACTTTATCTCATACATATATATTGCATTGTACGTGT
* *
373424 ATATATATTTTA-TTTATCTCATATTATATATATTGCATTGTAC
1 ATATATATATTACTTTATCTCATA-CATATATATTGCATTGTAC
373467 ACCAACAACT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
45 10 0.27
46 22 0.59
47 5 0.14
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.51
Consensus pattern (47 bp):
ATATATATATTACTTTATCTCATACATATATATTGCATTGTACGTGT
Found at i:375676 original size:20 final size:20
Alignment explanation
Indices: 375651--375689 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
375641 TTTTCAAGGG
375651 CATGCACCGATGCACCAATC
1 CATGCACCGATGCACCAATC
* *
375671 CATGCATCGATGCATCAAT
1 CATGCACCGATGCACCAAT
375690 TCATTTCTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.33, G:0.15, T:0.21
Consensus pattern (20 bp):
CATGCACCGATGCACCAATC
Found at i:375760 original size:45 final size:46
Alignment explanation
Indices: 375711--375799 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 46
375701 ACTTCGAATA
* *
375711 CATTTTATGCATCGATGCAC-ATACCATGCATCGATGCACTCAGTG
1 CATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTCAGTG
*
375756 CATTTGATGCATCGATGCACAAGACTATGCATCGATGCACTCAG
1 CATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTCAG
375800 GCTTTTTCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 19 0.47
46 21 0.52
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (46 bp):
CATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTCAGTG
Found at i:381741 original size:20 final size:20
Alignment explanation
Indices: 381716--381767 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
381706 TCCTTGAATG
381716 TGCATCGATGCACAGGGTCA
1 TGCATCGATGCACAGGGTCA
381736 TGCATCGATGCACAGGGTCA
1 TGCATCGATGCACAGGGTCA
381756 TGCATCGATGCA
1 TGCATCGATGCA
381768 TCCGTCGGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.21
Consensus pattern (20 bp):
TGCATCGATGCACAGGGTCA
Found at i:391767 original size:26 final size:26
Alignment explanation
Indices: 391729--391834 Score: 100
Period size: 26 Copynumber: 4.3 Consensus size: 26
391719 ATTTATTTTC
* *
391729 TTTTTCTTATTCTTTTTCATCTCTCT
1 TTTTTTTTCTTCTTTTTCATCTCTCT
* *
391755 TTTTTTTTCTTCTTTTCCATATCTC-
1 TTTTTTTTCTTCTTTTTCATCTCTCT
*
391780 -TTTTTTTC-T-TTTTTCATCCCTCT
1 TTTTTTTTCTTCTTTTTCATCTCTCT
391803 TTTTTTCTTCTATCTTTTT--TCTCT-T
1 TTTTTT-TTCT-TCTTTTTCATCTCTCT
391828 TTTTTTT
1 TTTTTTT
391835 ATTTTATCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
22 10 0.15
23 1 0.02
24 14 0.21
25 10 0.15
26 25 0.38
27 1 0.02
28 5 0.08
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.73
Consensus pattern (26 bp):
TTTTTTTTCTTCTTTTTCATCTCTCT
Found at i:391792 original size:22 final size:21
Alignment explanation
Indices: 391738--391811 Score: 76
Period size: 22 Copynumber: 3.2 Consensus size: 21
391728 CTTTTTCTTA
391738 TTCTTTTTCATCTCTCTTTTTTT
1 TTCTTTTTCATCTCTC--TTTTT
*
391761 TTCTTCTTTTCCATATCTCTTTTT
1 TTC-T-TTTT-CATCTCTCTTTTT
*
391785 TTCTTTTTTCATCCCTCTTTTT
1 TTC-TTTTTCATCTCTCTTTTT
391807 TTCTT
1 TTCTT
391812 CTATCTTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
21 2 0.04
22 14 0.31
23 7 0.16
24 11 0.24
25 4 0.09
26 7 0.16
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.70
Consensus pattern (21 bp):
TTCTTTTTCATCTCTCTTTTT
Found at i:391832 original size:48 final size:47
Alignment explanation
Indices: 391727--391839 Score: 122
Period size: 48 Copynumber: 2.3 Consensus size: 47
391717 TGATTTATTT
*
391727 TCTTTTTCTTATTC-TTTTTCATCTCTCTTTTTTTTTCTTCTTTTCCATA
1 TCTTTTT-TT-TTCTTTTTTCATCCCTCTTTTTTTTTCTTCTTTT-CATA
* * *
391776 TCTCTTTTTTTCTTTTTTCATCCCTCTTTTTTTCTTCTATCTTTT-TTC
1 TCTTTTTTTTTCTTTTTTCATCCCTCTTTTTTT-TTCT-TCTTTTCATA
*
391824 TCTTTTTTTTTATTTT
1 TCTTTTTTTTTCTTTT
391840 ATCTTCTCTT
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
47 3 0.05
48 36 0.65
49 10 0.18
50 6 0.11
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.73
Consensus pattern (47 bp):
TCTTTTTTTTTCTTTTTTCATCCCTCTTTTTTTTTCTTCTTTTCATA
Found at i:391849 original size:46 final size:46
Alignment explanation
Indices: 391741--391850 Score: 129
Period size: 46 Copynumber: 2.3 Consensus size: 46
391731 TTTCTTATTC
391741 TTTTTCATCTCTCTTTTTTTTTCTTCTTTTCCATATCTCTTTTTTTCT
1 TTTTTCATCTCTCTTTTTTTTTCTTCTTTT-C-TATCTCTTTTTTTCT
*
391789 TTTTTCATCCCTCTTTTTTTCTTCTATCTTTT-T-TCTCTTTTTTT-T
1 TTTTTCATCTCTCTTTTTTT-TTCT-TCTTTTCTATCTCTTTTTTTCT
391834 TATTTT-ATCTTCTCTTT
1 T-TTTTCATC-TCTCTTT
391851 ATTAGATGAG
Statistics
Matches: 56, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
45 5 0.09
46 21 0.38
47 1 0.02
48 19 0.34
49 4 0.07
50 6 0.11
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (46 bp):
TTTTTCATCTCTCTTTTTTTTTCTTCTTTTCTATCTCTTTTTTTCT
Found at i:395982 original size:13 final size:13
Alignment explanation
Indices: 395964--396011 Score: 87
Period size: 13 Copynumber: 3.7 Consensus size: 13
395954 TGCGTCATAA
395964 ATTTATGACGCGC
1 ATTTATGACGCGC
*
395977 ATTTATGACACGC
1 ATTTATGACGCGC
395990 ATTTATGACGCGC
1 ATTTATGACGCGC
396003 ATTTATGAC
1 ATTTATGAC
396012 TTACATTGCG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (13 bp):
ATTTATGACGCGC
Found at i:396079 original size:85 final size:85
Alignment explanation
Indices: 395990--396155 Score: 287
Period size: 85 Copynumber: 2.0 Consensus size: 85
395980 TATGACACGC
* *
395990 ATTTATGACGCGCATTTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAGATGA
1 ATTTATGACACGCATTTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAAATGA
*
396055 CACACATTTGTGTGTCATAA
66 CACACATTCGTGTGTCATAA
* *
396075 ATTTATGACACGCATTTATGACTTACATTGTGTGTCATTGAAGCCCCCGTCATAAATGAAAATGA
1 ATTTATGACACGCATTTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAAATGA
396140 CACACATTCGTGTGTC
66 CACACATTCGTGTGTC
396156 GTGATTGTAT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 76 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (85 bp):
ATTTATGACACGCATTTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAAATGA
CACACATTCGTGTGTCATAA
Found at i:403553 original size:3 final size:3
Alignment explanation
Indices: 403545--403575 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
403535 TATAATTATT
403545 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
403576 TGGGATGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:403871 original size:17 final size:17
Alignment explanation
Indices: 403845--403881 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
403835 TTGCGACCCA
*
403845 ATTCATATTTTTAACTC
1 ATTCAGATTTTTAACTC
403862 ATTCAGATTTTTAACTC
1 ATTCAGATTTTTAACTC
403879 ATT
1 ATT
403882 ATTTAGTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.30, C:0.16, G:0.03, T:0.51
Consensus pattern (17 bp):
ATTCAGATTTTTAACTC
Found at i:404310 original size:125 final size:125
Alignment explanation
Indices: 404081--404317 Score: 350
Period size: 125 Copynumber: 1.9 Consensus size: 125
404071 GTTGTAGCAA
*
404081 CATTATTTTAACTTTATTCCTTTGCTAGAGCCAATATCGGGCTCCTCTAGTATTTCTCATTGTTT
1 CATTATTTTAACTTTATTCCTTTGCTAGAGCCAATATCGGGCTCCTCCAGTATTTCTCATTGTTT
* * * *
404146 AATGCTAGTGCCAATGTTGGGTACCTCTAATATTATTTTGTTCCATTTCATTACTAAAGC
66 AATGCTAGAGCCAATGTTAGGCACCTCTAACATTATTTTGTTCCATTTCATTACTAAAGC
* * * * * *
404206 CATTTTTTTAACTTTATTCCTTTGCTGGAGCTAATGTTGGGCAT-CTCCAGTATTTCTCCTTGTT
1 CATTATTTTAACTTTATTCCTTTGCTAGAGCCAATATCGGGC-TCCTCCAGTATTTCTCATTGTT
*
404270 TAATGCTAGAGCCAATGTTAGGCACCTCTAACATTCTTTTGTTCCATT
65 TAATGCTAGAGCCAATGTTAGGCACCTCTAACATTATTTTGTTCCATT
404318 GCTTTAATAG
Statistics
Matches: 99, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
125 98 0.99
126 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.43
Consensus pattern (125 bp):
CATTATTTTAACTTTATTCCTTTGCTAGAGCCAATATCGGGCTCCTCCAGTATTTCTCATTGTTT
AATGCTAGAGCCAATGTTAGGCACCTCTAACATTATTTTGTTCCATTTCATTACTAAAGC
Found at i:406703 original size:4 final size:4
Alignment explanation
Indices: 406694--406743 Score: 64
Period size: 4 Copynumber: 12.5 Consensus size: 4
406684 CAAAGAAAAT
* * * *
406694 TATA TATA TATA TATA TATA TATA TATA TATG TATG TATG TATG TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
406742 TA
1 TA
406744 AATTATAAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (4 bp):
TATA
Found at i:410569 original size:18 final size:18
Alignment explanation
Indices: 410546--410587 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
410536 TTAATACTAT
410546 GTCATTGAGAGTACTTAG
1 GTCATTGAGAGTACTTAG
410564 GTCATTGAGAGTACTTAG
1 GTCATTGAGAGTACTTAG
410582 GTCATT
1 GTCATT
410588 TAGTAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (18 bp):
GTCATTGAGAGTACTTAG
Found at i:411331 original size:13 final size:13
Alignment explanation
Indices: 411313--411337 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
411303 TAACTTTTTG
411313 GTCAAAGTCAACA
1 GTCAAAGTCAACA
411326 GTCAAAGTCAAC
1 GTCAAAGTCAAC
411338 GAGTTAACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.24, G:0.16, T:0.16
Consensus pattern (13 bp):
GTCAAAGTCAACA
Found at i:411388 original size:15 final size:14
Alignment explanation
Indices: 411335--411390 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
411325 AGTCAAAGTC
* *
411335 AACGAGTTAACTCG
1 AACGAGTTGACTCA
*
411349 GACGAGTTGACTCA
1 AACGAGTTGACTCA
* *
411363 GACGGGTTGACTCA
1 AACGAGTTGACTCA
411377 AACCGAGTTGACTC
1 AA-CGAGTTGACTC
411391 GGTCGGGACA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
14 25 0.71
15 10 0.29
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (14 bp):
AACGAGTTGACTCA
Found at i:415135 original size:26 final size:25
Alignment explanation
Indices: 415090--415139 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
415080 AAACACGAAG
*
415090 AAGAAAAAAAATTCTGAAAAAATAA
1 AAGAAAAAAAATTCTAAAAAAATAA
415115 AAGAAAATAAAATAT-TAAAAAAATA
1 AAGAAAA-AAAAT-TCTAAAAAAATA
415140 GAGTGTTACA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 7 0.32
26 14 0.64
27 1 0.05
ACGTcount: A:0.74, C:0.02, G:0.06, T:0.18
Consensus pattern (25 bp):
AAGAAAAAAAATTCTAAAAAAATAA
Found at i:418985 original size:20 final size:20
Alignment explanation
Indices: 418960--419008 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
418950 GAATGATAAA
* *
418960 AGCAGAGGAATGCTATAATG
1 AGCAGAGGAATGATATAACG
418980 AGCAGAGGAATGATATAACG
1 AGCAGAGGAATGATATAACG
*
419000 AGTAGAGGA
1 AGCAGAGGA
419009 GCAATCAGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.43, C:0.08, G:0.33, T:0.16
Consensus pattern (20 bp):
AGCAGAGGAATGATATAACG
Found at i:424433 original size:20 final size:20
Alignment explanation
Indices: 424404--424446 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
424394 ATGGCACCAC
**
424404 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATAATCCTAA
*
424424 ATGCATCTATATAATCCTAA
1 ATGCAACTATATAATCCTAA
424444 ATG
1 ATG
424447 GGCTCTTGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATAATCCTAA
Found at i:426967 original size:40 final size:40
Alignment explanation
Indices: 426912--427033 Score: 235
Period size: 40 Copynumber: 3.0 Consensus size: 40
426902 TGCAGGTTTA
*
426912 TAATACACTTTGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
426952 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
426992 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
427032 TA
1 TA
427034 GCACTACGGT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (40 bp):
TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
Found at i:427232 original size:47 final size:45
Alignment explanation
Indices: 427138--427263 Score: 164
Period size: 47 Copynumber: 2.8 Consensus size: 45
427128 GTAACCATGC
* * *
427138 AAATAAGCTTATGAGCTTACGGAAT-AATGGCAAGTATATAGGAA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATAGGAA
* * *
427182 AAATAAGCTTACGAGCTTATGGAATTTAAATGGTAAGTATTTTGGTA
1 AAATAAGCTTACGAGCTTATGGAA--TAAATGGTAAGTATATAGGAA
*
427229 AAATAAGCTTACGAGCTTATGGGATAAATGGTAAG
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
427264 AGATTTTATA
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
44 22 0.31
45 11 0.15
46 1 0.01
47 38 0.53
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATAGGAA
Found at i:429025 original size:6 final size:6
Alignment explanation
Indices: 429014--429050 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
429004 AAGACCCATA
*
429014 GGTCAT GGTCAT GGTCAT TGTCAT GGTCAT GGTCAT G
1 GGTCAT GGTCAT GGTCAT GGTCAT GGTCAT GGTCAT G
429051 ATACAAGTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.16, C:0.16, G:0.32, T:0.35
Consensus pattern (6 bp):
GGTCAT
Found at i:430166 original size:17 final size:17
Alignment explanation
Indices: 430144--430176 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
430134 ATATATTATA
430144 AGAAGAAGAAAAAAAAC
1 AGAAGAAGAAAAAAAAC
430161 AGAAGAAGAAAAAAAA
1 AGAAGAAGAAAAAAAA
430177 AATAGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (17 bp):
AGAAGAAGAAAAAAAAC
Found at i:430189 original size:6 final size:6
Alignment explanation
Indices: 430143--430250 Score: 71
Period size: 6 Copynumber: 18.3 Consensus size: 6
430133 TATATATTAT
* * * *
430143 AAGAAG AAGAAA AA-AAA CAGAAG AAGAAA AAAAAA ATAGAAA AAGAAA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA A-AGAAA AAGAAA
* * * * * * *
430191 ATGAAA ATGAAA ACGAAG AAG-AA AA-AAA ATGAAA ACGAGA AAG-AA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA
430236 AAGAAA AAGAGAA AA
1 AAGAAA AAGA-AA AA
430251 AAATGAGAGA
Statistics
Matches: 79, Mismatches: 17, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
5 14 0.18
6 56 0.71
7 9 0.11
ACGTcount: A:0.75, C:0.03, G:0.19, T:0.04
Consensus pattern (6 bp):
AAGAAA
Found at i:430191 original size:17 final size:17
Alignment explanation
Indices: 430144--430254 Score: 55
Period size: 19 Copynumber: 6.0 Consensus size: 17
430134 ATATATTATA
* *
430144 AGAAGAAGAAAAAAAAC
1 AGAAAAAGAAAAAAAAT
*
430161 AGAAGAAGAAAAAAAAAAT
1 AGAA-AA-AGAAAAAAAAT
430180 AGAAAAAGAAAATGAAAAT
1 AGAAAAAGAAAA--AAAAT
*
430199 -GAAAACGAAGAAGAAAAAAA
1 AG-AAA--AAGAA-AAAAAAT
* *
430219 ATGAAAACGAGAAAGAAA-
1 A-GAAAAAGA-AAAAAAAT
430237 AGAAAAAGAGAAAAAAAT
1 AGAAAAAGA-AAAAAAAT
430255 GAGAGATGAA
Statistics
Matches: 73, Mismatches: 9, Indels: 23
0.70 0.09 0.22
Matches are distributed among these distances:
17 23 0.32
18 5 0.07
19 29 0.40
20 5 0.07
21 8 0.11
22 3 0.04
ACGTcount: A:0.75, C:0.03, G:0.18, T:0.05
Consensus pattern (17 bp):
AGAAAAAGAAAAAAAAT
Found at i:430225 original size:40 final size:39
Alignment explanation
Indices: 430165--430253 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 39
430155 AAAAACAGAA
430165 GAAGAAAAAAAAAATAGAAAAAGA-AAATGAAAATGAAAAC
1 GAAGAAAAAAAAAATAGAAAAAGAGAAA-GAAAA-GAAAAC
* *
430205 GAAGAAGAAAAAAAAT-GAAAACGAGAAAGAAAAGAAAAA
1 GAAGAA-AAAAAAAATAGAAAAAGAGAAAGAAAAGAAAAC
430244 G-AGAAAAAAA
1 GAAGAAAAAAA
430254 TGAGAGATGA
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
37 5 0.11
38 4 0.09
39 6 0.13
40 18 0.40
41 12 0.27
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.04
Consensus pattern (39 bp):
GAAGAAAAAAAAAATAGAAAAAGAGAAAGAAAAGAAAAC
Found at i:430234 original size:46 final size:43
Alignment explanation
Indices: 430143--430242 Score: 116
Period size: 43 Copynumber: 2.3 Consensus size: 43
430133 TATATATTAT
*
430143 AAGAAGAAGAAAA--AAAACAGAAGAAGAAAAAAAAAATAGAAA
1 AAGAA-AAGAAAATGAAAACAGAAGAAGAAAAAAAAAAAAGAAA
*
430185 AAGAAAATGAAAATGAAAAC-GAAGAAGAAAAAAAATGAAAACGAGA
1 AAGAAAA-GAAAATGAAAACAGAAGAAGAAAAAAAA--AAAA-GAAA
430231 AAGAAAAGAAAA
1 AAGAAAAGAAAA
430243 AGAGAAAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
41 2 0.04
42 10 0.20
43 15 0.30
44 5 0.10
45 8 0.16
46 10 0.20
ACGTcount: A:0.75, C:0.03, G:0.18, T:0.04
Consensus pattern (43 bp):
AAGAAAAGAAAATGAAAACAGAAGAAGAAAAAAAAAAAAGAAA
Found at i:430258 original size:28 final size:27
Alignment explanation
Indices: 430180--430271 Score: 73
Period size: 28 Copynumber: 3.3 Consensus size: 27
430170 AAAAAAAAAT
430180 AGAAAAAGAAAATGAAAATGA-AAACGAAGA
1 AGAAAAAGAAAA--AAAATGAGAAA-GAA-A
* *
430210 AGAAAAA-AAATGAAAACGAGAAAGAAA
1 AGAAAAAGAAA-AAAAATGAGAAAGAAA
*
430237 AGAAAAAGAGAAAAAAATGAGAGATGAAA
1 AGAAAAAGA-AAAAAAATGAGA-AAGAAA
430266 A-AAAAA
1 AGAAAAA
430272 TATTTCACTT
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
27 8 0.15
28 23 0.44
29 14 0.27
30 7 0.13
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.05
Consensus pattern (27 bp):
AGAAAAAGAAAAAAAATGAGAAAGAAA
Found at i:434052 original size:40 final size:40
Alignment explanation
Indices: 433997--434118 Score: 235
Period size: 40 Copynumber: 3.0 Consensus size: 40
433987 TGCAGGTTTA
433997 TAATACACTTTGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTTGGTGTATATGGTGGGCACGACCTTATGTG
*
434037 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTTGGTGTATATGGTGGGCACGACCTTATGTG
434077 TAATACACTTTGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTTGGTGTATATGGTGGGCACGACCTTATGTG
434117 TA
1 TA
434119 GCACTACGGT
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 80 1.00
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (40 bp):
TAATACACTTTGGTGTATATGGTGGGCACGACCTTATGTG
Found at i:434317 original size:47 final size:45
Alignment explanation
Indices: 434223--434348 Score: 164
Period size: 47 Copynumber: 2.8 Consensus size: 45
434213 GTAACCATGC
* * *
434223 AAATAAGCTTATGAGCTTACGGAAT-AATGGCAAGTATATAGGAA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATAGGAA
* * *
434267 AAATAAGCTTACGAGCTTATGGAATTTAAATGGTAAGTATTTTGGTA
1 AAATAAGCTTACGAGCTTATGGAA--TAAATGGTAAGTATATAGGAA
*
434314 AAATAAGCTTACGAGCTTATGGGATAAATGGTAAG
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
434349 AGATTTTATA
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
44 22 0.31
45 11 0.15
46 1 0.01
47 38 0.53
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATAGGAA
Found at i:445045 original size:20 final size:20
Alignment explanation
Indices: 445008--445046 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
444998 AGAGCCCATG
* *
445008 TAGGATCATATAGATGCATT
1 TAGGAGCATAGAGATGCATT
*
445028 TAGGAGCATAGAGTTGCAT
1 TAGGAGCATAGAGATGCAT
445047 GTGGTGAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (20 bp):
TAGGAGCATAGAGATGCATT
Found at i:449707 original size:12 final size:13
Alignment explanation
Indices: 449682--449716 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
449672 TAATGGGCAA
449682 TTTTGAAAACTAT
1 TTTTGAAAACTAT
449695 TTTTGAAAA-TAT
1 TTTTGAAAACTAT
449707 TGTTTGAAAA
1 T-TTTGAAAA
449717 ACATCATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 4 0.19
13 17 0.81
ACGTcount: A:0.40, C:0.03, G:0.11, T:0.46
Consensus pattern (13 bp):
TTTTGAAAACTAT
Found at i:450268 original size:21 final size:20
Alignment explanation
Indices: 450211--450268 Score: 62
Period size: 23 Copynumber: 2.7 Consensus size: 20
450201 TACACTCTTG
450211 AGTGTATCGATACACATTCA
1 AGTGTATCGATACACATTCA
* *
450231 AGGAATATATCGGTACACATTCA
1 A-G--TGTATCGATACACATTCA
450254 TAGTGTATCGATACA
1 -AGTGTATCGATACA
450269 TAGCGAGGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
20 1 0.03
21 11 0.37
23 17 0.57
24 1 0.03
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.29
Consensus pattern (20 bp):
AGTGTATCGATACACATTCA
Found at i:454734 original size:21 final size:22
Alignment explanation
Indices: 454703--454743 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
454693 TACAACAACA
*
454703 AAAAACAAAAAAAGGCAAAAAC
1 AAAAACAAAAAAAGCCAAAAAC
454725 AAAAAC-AAAAAAGCCAAAA
1 AAAAACAAAAAAAGCCAAAA
454744 TTTCAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.78, C:0.15, G:0.07, T:0.00
Consensus pattern (22 bp):
AAAAACAAAAAAAGCCAAAAAC
Found at i:470927 original size:23 final size:26
Alignment explanation
Indices: 470900--470947 Score: 75
Period size: 23 Copynumber: 2.0 Consensus size: 26
470890 ATTAAAAGAA
470900 AATATTAAATA-AAC-AAT-TTTAAT
1 AATATTAAATATAACGAATATTTAAT
470923 AATATTAAATATAACGAATATTTAA
1 AATATTAAATATAACGAATATTTAA
470948 CAAAAATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 11 0.50
24 3 0.14
25 3 0.14
26 5 0.23
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (26 bp):
AATATTAAATATAACGAATATTTAAT
Found at i:471336 original size:7 final size:7
Alignment explanation
Indices: 471327--471415 Score: 58
Period size: 7 Copynumber: 13.0 Consensus size: 7
471317 ATGGTTAGTG
*
471327 TTTAGGG
1 TTTAGGA
*
471334 TTTAAGA
1 TTTAGGA
*
471341 TTTAGAA
1 TTTAGGA
*
471348 TTTAGGG
1 TTTAGGA
471355 TTTA-GA
1 TTTAGGA
*
471361 TTTAAGA
1 TTTAGGA
*
471368 TTTAGGG
1 TTTAGGA
*
471375 TTT-GTGG
1 TTTAG-GA
*
471382 TTTAAGA
1 TTTAGGA
471389 TTTA-GA
1 TTTAGGA
*
471395 TTTAAGA
1 TTTAGGA
471402 TTTAGGA
1 TTTAGGA
*
471409 ATTAGGA
1 TTTAGGA
471416 ACTGGGGTTT
Statistics
Matches: 65, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
6 12 0.18
7 53 0.82
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.44
Consensus pattern (7 bp):
TTTAGGA
Found at i:471363 original size:20 final size:21
Alignment explanation
Indices: 471327--471414 Score: 92
Period size: 20 Copynumber: 4.3 Consensus size: 21
471317 ATGGTTAGTG
471327 TTTAGGGTTTAAGATTT-AGAA
1 TTTAGGGTTTAAGATTTAAG-A
471348 TTTAGGGTTT-AGATTTAAGA
1 TTTAGGGTTTAAGATTTAAGA
** *
471368 TTTAGGGTTTGTGGTTTAAGA
1 TTTAGGGTTTAAGATTTAAGA
* *
471389 TTTA-GATTTAAGATTTAGGA
1 TTTAGGGTTTAAGATTTAAGA
*
471409 ATTAGG
1 TTTAGG
471415 AACTGGGGTT
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
20 31 0.55
21 25 0.45
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.44
Consensus pattern (21 bp):
TTTAGGGTTTAAGATTTAAGA
Found at i:471370 original size:27 final size:28
Alignment explanation
Indices: 471334--471407 Score: 84
Period size: 27 Copynumber: 2.7 Consensus size: 28
471324 GTGTTTAGGG
471334 TTTAAGATTTAGAATTTAGGGTTT-AGA
1 TTTAAGATTTAGAATTTAGGGTTTAAGA
**
471361 TTTAAGATTTAGGGTTT-GTGGTTTAAGA
1 TTTAAGATTTAGAATTTAG-GGTTTAAGA
471389 TTT-AGATTTA-AGATTTAGG
1 TTTAAGATTTAGA-ATTTAGG
471408 AATTAGGAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
26 1 0.03
27 31 0.79
28 7 0.18
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (28 bp):
TTTAAGATTTAGAATTTAGGGTTTAAGA
Found at i:471400 original size:13 final size:13
Alignment explanation
Indices: 471382--471406 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
471372 GGGTTTGTGG
471382 TTTAAGATTTAGA
1 TTTAAGATTTAGA
471395 TTTAAGATTTAG
1 TTTAAGATTTAG
471407 GAATTAGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
TTTAAGATTTAGA
Found at i:471613 original size:3 final size:3
Alignment explanation
Indices: 471597--471646 Score: 86
Period size: 3 Copynumber: 17.3 Consensus size: 3
471587 CACGCTCTAG
471597 AAT AAT -AT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
471643 AAT A
1 AAT A
471647 TATATATGAT
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 4 0.09
3 41 0.91
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:476487 original size:21 final size:21
Alignment explanation
Indices: 476463--476519 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
476453 ACAATTCCCA
* *
476463 TCATGAAAAGATTAAGCCATT
1 TCATCAAAAGGTTAAGCCATT
*
476484 TCATCAAAAGGTTAAGCCCTT
1 TCATCAAAAGGTTAAGCCATT
476505 TCATCAAAAGGTTAA
1 TCATCAAAAGGTTAA
476520 ATCCTTTCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (21 bp):
TCATCAAAAGGTTAAGCCATT
Found at i:476537 original size:21 final size:21
Alignment explanation
Indices: 476463--476529 Score: 80
Period size: 21 Copynumber: 3.2 Consensus size: 21
476453 ACAATTCCCA
* * * *
476463 TCATGAAAAGATTAAGCCATT
1 TCATCAAAAGGTTAAACCCTT
*
476484 TCATCAAAAGGTTAAGCCCTT
1 TCATCAAAAGGTTAAACCCTT
*
476505 TCATCAAAAGGTTAAATCCTT
1 TCATCAAAAGGTTAAACCCTT
476526 TCAT
1 TCAT
476530 TGAAAGGTCT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.31
Consensus pattern (21 bp):
TCATCAAAAGGTTAAACCCTT
Found at i:478158 original size:22 final size:22
Alignment explanation
Indices: 478133--478182 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
478123 GATATAATAT
478133 GAAATGAAATAAAACCCTAAAA
1 GAAATGAAATAAAACCCTAAAA
*
478155 GAAATGAAATAAAACCTTAAAA
1 GAAATGAAATAAAACCCTAAAA
478177 GAAATG
1 GAAATG
478183 TGAACATCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.62, C:0.10, G:0.12, T:0.16
Consensus pattern (22 bp):
GAAATGAAATAAAACCCTAAAA
Found at i:491990 original size:22 final size:23
Alignment explanation
Indices: 491951--491993 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
491941 ATATATGTAA
*
491951 TTAAAATAAAATGGTAAAAATAT
1 TTAAAATAAAATGATAAAAATAT
*
491974 TTAAATTAAAAT-ATAAAAAT
1 TTAAAATAAAATGATAAAAAT
491994 CTTAGCAAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TTAAAATAAAATGATAAAAATAT
Found at i:492942 original size:59 final size:60
Alignment explanation
Indices: 492878--493011 Score: 162
Period size: 59 Copynumber: 2.2 Consensus size: 60
492868 ATTGACTCGT
* * * * **
492878 AAACTTTTGAATATTCTAATTTCATCCCTAAACTATGA-CTTCATTATAAATTAGTTCTG
1 AAACTTTTGAATATTCTAATCTCATCCCTAAACTATGATATTCATTATAAATTAATCCCC
* * * * *
492937 AAACTTTTAAACATTCTAATCTCATCCCTATACTATGATATTCTTTCTAAATTAATCCCC
1 AAACTTTTGAATATTCTAATCTCATCCCTAAACTATGATATTCATTATAAATTAATCCCC
492997 AAACTTTTGAATATT
1 AAACTTTTGAATATT
493012 TCAATTTAGT
Statistics
Matches: 61, Mismatches: 13, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
59 34 0.56
60 27 0.44
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.42
Consensus pattern (60 bp):
AAACTTTTGAATATTCTAATCTCATCCCTAAACTATGATATTCATTATAAATTAATCCCC
Found at i:493272 original size:59 final size:59
Alignment explanation
Indices: 493169--493313 Score: 159
Period size: 59 Copynumber: 2.4 Consensus size: 59
493159 GGAATGTTTA
* * * *
493169 AAAAGTTTGGGGACTAATTTAAAATATAAGTCATGGGTTGGGGATAAAATTTA-AATGTTC
1 AAAAGTTT-AGGACTAATTTAAAATATAAGTCATAGGTTAGGGATAAAA-TTAGAATATTC
* * * * *
493229 AAAAGTTTAGGACTAATTTAGAATGAT-AGTTATAGTTTAGGGATAAAATTAGATTATTT
1 AAAAGTTTAGGACTAATTTAAAAT-ATAAGTCATAGGTTAGGGATAAAATTAGAATATTC
493288 AAAAGTTTAGGGACTAATTTAAAATA
1 AAAAGTTTA-GGACTAATTTAAAATA
493314 GAGATCATAT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
58 3 0.04
59 45 0.62
60 24 0.33
ACGTcount: A:0.41, C:0.03, G:0.20, T:0.35
Consensus pattern (59 bp):
AAAAGTTTAGGACTAATTTAAAATATAAGTCATAGGTTAGGGATAAAATTAGAATATTC
Found at i:495241 original size:15 final size:17
Alignment explanation
Indices: 495218--495251 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
495208 TTAATATATG
495218 TTTAGTTTATTA-TTAT
1 TTTAGTTTATTAGTTAT
495234 TTTA-TTTATTAGTTAT
1 TTTAGTTTATTAGTTAT
495250 TT
1 TT
495252 AGGACCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (17 bp):
TTTAGTTTATTAGTTAT
Found at i:499893 original size:15 final size:17
Alignment explanation
Indices: 499870--499903 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
499860 TTAATATATG
499870 TTTAGTTTATTA-TTAT
1 TTTAGTTTATTAGTTAT
499886 TTTA-TTTATTAGTTAT
1 TTTAGTTTATTAGTTAT
499902 TT
1 TT
499904 AGGACCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (17 bp):
TTTAGTTTATTAGTTAT
Found at i:500174 original size:47 final size:47
Alignment explanation
Indices: 500086--500176 Score: 121
Period size: 47 Copynumber: 1.9 Consensus size: 47
500076 CACACTCCAA
* * * *
500086 TTTGCCTTTTCATCGCGACTAGGAGGTTGGTTAGAGCCATTATCGTG
1 TTTGCCTTTTCATCGCGACTAGGAGGCTCGATAGAGACATTATCGTG
*
500133 TTTGCCTTTTCATTGCGACTAGGAGGGCTCGATAG-GACATTATC
1 TTTGCCTTTTCATCGCGACTAGGA-GGCTCGATAGAGACATTATC
500177 CATCGATTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
47 31 0.82
48 7 0.18
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (47 bp):
TTTGCCTTTTCATCGCGACTAGGAGGCTCGATAGAGACATTATCGTG
Found at i:508304 original size:14 final size:13
Alignment explanation
Indices: 508287--508318 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
508277 AGGTTAATAA
508287 ATTATTATTATATT
1 ATTATTATTATA-T
508301 ATTATTATTATAT
1 ATTATTATTATAT
508314 ATTAT
1 ATTAT
508319 ACAATAAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTATTATTATAT
Found at i:510599 original size:61 final size:61
Alignment explanation
Indices: 510499--510614 Score: 151
Period size: 61 Copynumber: 1.9 Consensus size: 61
510489 TAAATTTTTT
* * *
510499 GGGTAATCTATAAGGCTTTCGAGAAAAATGATAAGTCCTTCAAGCCATCCATAAGACCTTC
1 GGGTAATCTACAAGCCTTTCGAGAAAAATGATAAGTCCTTCAAGCAATCCATAAGACCTTC
* * * * **
510560 GGGTTATCTACAAGCCTTTCGAGCAAGATGATAGGTCCTTCGGGCAATCCATAAG
1 GGGTAATCTACAAGCCTTTCGAGAAAAATGATAAGTCCTTCAAGCAATCCATAAG
510615 TCTTTGAGTA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 46 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (61 bp):
GGGTAATCTACAAGCCTTTCGAGAAAAATGATAAGTCCTTCAAGCAATCCATAAGACCTTC
Found at i:511184 original size:234 final size:232
Alignment explanation
Indices: 510555--512042 Score: 1695
Period size: 232 Copynumber: 6.4 Consensus size: 232
510545 ATCCATAAGA
* ** * * * * * *
510555 CCTTCGGGTTATCTACAAGCCTTTCGAGCAAGATGATAGGTCCTTCGGGCAATCCATAAGTCTTT
1 CCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCAATAAGACCTT
* * *
510620 GA-GTAGGATATTTTCACGTGATTT-AAAAAATTGAGAAAGGTTTCTCATTTAAATCTGAAATTT
66 CAGGTAGGATGTTTTCACATGATTTCAAAAAA-TGAGAAAGGTTTCTCATTTAAATCTGAAATTT
* *
510683 GAAATTTTTTGAAAAGCAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAATTTGGTAAGTCCT
130 GAAA-TTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCT
** * * * *
510748 TTGGGCCATCAGTAAGACTATCGAGCATGATGCTGATATT
194 TCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTA-AAT
** * * ** * *
510788 TTTTTGGGTAATCTGTAAGCCTTTTAAGCAAGATGATAAGTACTTCAGGCCATCCAA-AAGATCT
1 CCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCAT-CAATAAGACCT
* * * * *
510852 TCGGGTAGGATG-TTTCACTTG-TGTCTCGAAAAATGAGAAACGCTTCTCATTTAAATCTGAAAT
65 TCAGGTAGGATGTTTTCACATGAT-T-TCAAAAAATGAGAAAGGTTTCTCATTTAAATCTGAAAT
* * *
510915 TTGAAATTTTTAAAAAGTAAGAAAGGTTTCTTACCTAATAAACTATTTCCAAAATTGGTAAGCCC
128 TTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC
* *
510980 TTCAGGCCATCAGTAAGTCTTTCGAGCACGATGTTTAAAT
193 TTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAAT
* * * *
511020 CCTTCAGGTCATTTGTAAGCCTTTTGAGCAAGATGATAAGTCCTTCACGCCATCAATAAGACCTT
1 CCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCAATAAGACC-T
* * *
511085 TCAGGTAGGATGTTTTCACATGATTTTCAAAAAATGAGAAAGGTTTCTCATTTAAACCTTAAACT
65 TCAGGTAGGATGTTTTCACATGA-TTTCAAAAAATGAGAAAGGTTTCTCATTTAAATCTGAAATT
* * *
511150 TGAAATTTTTGAAAAGTAAGATAGGTTTCTTACCTTGTAAACTATTTCCAAAATTGGCAAGTCCT
129 TGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCT
*
511215 TC-GAGCCATTAGTAAGTCTTTCGAGCATGATGCTTAAAT
194 TCAG-GCCATCAGTAAGTCTTTCGAGCATGATGCTTAAAT
* * * * * * * *
511254 CATTTGGGTCATCTGCAAGCCTTTCGACCAATATAATAAGTCTTTCAAGCCATCAATAAGACCTT
1 CCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCAATAAGACCTT
* ** * *
511319 CAGGTATGATGTTTTCACATGATTTCAAAAAATGAGAAAAATTTCTCATTTTAATCTGAAAATTG
66 CAGGTAGGATGTTTTCACATGATTTCAAAAAATGAGAAAGGTTTCTCATTTAAATCTGAAATTTG
* * * * * *
511384 AATTTTTTGAAATGTAAGAAAGGTTTCTTACCTACTAAACTATTTCTAAAACTGGTAAGTCCTCC
131 AAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTC
* * ** *
511449 GGGCCATCAATAAGTCTTTTAAGCGTGATGCTTAAAT
196 AGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAAT
** * *
511486 CCCCCGGGTCATCTGTAAGCCTTTCGAGCAAGATAATAAGTCCTTC-GTGCCATCCATAAGACCT
1 CCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAG-GCCATCAATAAGACCT
* * * ** *
511550 TCGGGTATGATGTTTT--CATG------AAAGATGAGAAAAATTTCTAATTTGAAA-CTGAAATT
65 TCAGGTAGGATGTTTTCACATGATTTCAAAAAATGAGAAAGGTTTCTCATTT-AAATCTGAAATT
511606 TGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCT
129 TGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCT
* *
511671 TCAGGGCCATCAGTAATTCTTTCGAGCATAATGCTTAAAT
194 TCA-GGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAAT
* * * ** *
511711 CCTTCGGGTTATCTATAAGCCTTTCGAGCAATATGATAAGTCCTTTGGGCCATCTATAAGACCTT
1 CCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCAATAAGACCTT
* * * *
511776 CGGGTAGGATGTTTTCACATGATTTCAAAAAATTAGAAAGGTTTCTCATTTGAATATGAAATTTG
66 CAGGTAGGATGTTTTCACATGATTTCAAAAAATGAGAAAGGTTTCTCATTTAAATCTGAAATTTG
*
511841 -AATTTTTGAAAAGTATGAAAGGTTTCTTACCTAGTAAACTATTAT-CAAAATTGGTAAGTCCTT
131 AAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATT-TCCAAAATTGGTAAGTCCTT
* * * *
511904 CAGGCCATCAGTTAGTCTTTCAAGCATGGTGGTTAAAT
195 CAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAAT
* * * * * *
511942 -CTTCCGGGTCATCTATATGCCTTTCGAGTAAGATGATAAGTCCTTCGGGCTATTC-ATAAGGCC
1 CCTT-CGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCA-TCAATAAGACC
* * * *
512005 TTC-GAGTATGATATTTTCGCATGATTTCAAAAGATGAG
64 TTCAG-GTAGGATGTTTTCACATGATTTCAAAAAATGAG
512043 GAATGCATCA
Statistics
Matches: 1068, Mismatches: 158, Indels: 60
0.83 0.12 0.05
Matches are distributed among these distances:
224 90 0.08
225 101 0.09
226 1 0.00
227 4 0.00
230 8 0.01
231 113 0.11
232 309 0.29
233 205 0.19
234 230 0.22
235 6 0.01
236 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (232 bp):
CCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCAATAAGACCTT
CAGGTAGGATGTTTTCACATGATTTCAAAAAATGAGAAAGGTTTCTCATTTAAATCTGAAATTTG
AAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTC
AGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAAT
Found at i:511881 original size:456 final size:454
Alignment explanation
Indices: 510571--512022 Score: 1692
Period size: 456 Copynumber: 3.1 Consensus size: 454
510561 GGTTATCTAC
* * * * * * * *
510571 AAGCCTTTCGAGCAAGATGATAGGTCCTTCGGGCAATCCATAAG-TCTTTGAGTAGGATATTTTC
1 AAGCCTTTCGAGCAAGATGATAAGTCCTTCGCGCCATCCATAAGACCTTCGGGTATGATGTTTTC
* *
510635 ACGTGATTTAAAAAATTGAGAAAGGTTTCTCATTTAAATCTGAAATTTGAAATTTTTTGAAAAGC
66 A--TG---T-AAAAA-TGAGAAAGGTTTCTCATTTAAACCTGAAATTTGAAA-TTTTTGAAAAGT
* * *
510700 AAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAATTTGGTAAGTCCTTTGGGCCATCAGTAAGA
123 AAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGT
* * * ** ** *
510765 CTATCGAGCATGATGCTGATATTTTTTTGGGTAATCTGTAAGCCTTTTAAGCAAGATGATAAGTA
188 CTTTCGAGCATGATGCTTA-AATCATTTGGGTAATCTGTAAGCCTTTCGAGCAATATGATAAGT-
* * * *
510830 CTTCAGGCCATCCAA-AAGATCTTCGGGTAGGATG-TTTCACTTG-TGTCTCGAAAAATGAGAAA
251 CTTTAGGCCAT-CAATAAGACCTTCGGGTAGGATGTTTTCACATGAT-T-TCAAAAAATGAGAAA
* * *
510892 CGCTTCTCATTTAAATCTGAAATTTGAAATTTTTAAAAAGTAAGAAAGGTTTCTTACCTAATAAA
313 AGTTTCTCATTTAAATCTGAAATTTG-AATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAATAAA
* * * *
510957 CTATTTCCAAAATTGGTAAGCCCTTCAGGCCATCAGTAAGTCTTTCGAGCACGATGTTTAAATCC
377 CTATTT-CAAAATTGGTAAGTCCTTCAGGCCATCAGTAAGTCTTTCAAGCATGATGCTTAAATCC
* * *
511022 TTCAGGTCATTTGT
441 TCCGGGTCATCTGT
* * * * *
511036 AAGCCTTTTGAGCAAGATGATAAGTCCTTCACGCCATCAATAAGACCTTTCAGGTAGGATGTTTT
1 AAGCCTTTCGAGCAAGATGATAAGTCCTTCGCGCCATCCATAAGACC-TTCGGGTATGATGTTTT
* *
511101 CACATGATTTTCAAAAAATGAGAAAGGTTTCTCATTTAAACCTTAAACTTGAAATTTTTGAAAAG
65 --CATG----T--AAAAATGAGAAAGGTTTCTCATTTAAACCTGAAATTTGAAATTTTTGAAAAG
* * * * *
511166 TAAGATAGGTTTCTTACCTTGTAAACTATTTCCAAAATTGGCAAGTCCTTCGAGCCATTAGTAAG
122 TAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAG
* * * *
511231 TCTTTCGAGCATGATGCTTAAATCATTTGGGTCATCTGCAAGCCTTTCGACCAATATAATAAGTC
187 TCTTTCGAGCATGATGCTTAAATCATTTGGGTAATCTGTAAGCCTTTCGAGCAATATGATAAGTC
* * * *
511296 TTTCAAGCCATCAATAAGACCTTCAGGTATGATGTTTTCACATGATTTCAAAAAATGAGAAAAAT
252 TTT-AGGCCATCAATAAGACCTTCGGGTAGGATGTTTTCACATGATTTCAAAAAATGAGAAAAGT
* * * *
511361 TTCTCATTTTAATCTGAAAATTGAATTTTTTGAAATGTAAGAAAGGTTTCTTACCTACTAAACTA
316 TTCTCATTTAAATCTGAAATTTGAA-TTTTTGAAAAGTAAGAAAGGTTTCTTACCTAATAAACTA
* * * * * * *
511426 TTTCTAAAACTGGTAAGTCCTCCGGGCCATCAATAAGTCTTTTAAGCGTGATGCTTAAATCCCCC
380 TTTC-AAAATTGGTAAGTCCTTCAGGCCATCAGTAAGTCTTTCAAGCATGATGCTTAAATCCTCC
511491 GGGTCATCTGT
444 GGGTCATCTGT
* *
511502 AAGCCTTTCGAGCAAGATAATAAGTCCTTCGTGCCATCCATAAGACCTTCGGGTATGATGTTTTC
1 AAGCCTTTCGAGCAAGATGATAAGTCCTTCGCGCCATCCATAAGACCTTCGGGTATGATGTTTTC
* ** *
511567 ATG-AAAGATGAGAAAAATTTCTAATTTGAAA-CTGAAATTTGAAATTTTTGAAAAGTAAGAAAG
66 ATGTAAAAATGAGAAAGGTTTCTCATTT-AAACCTGAAATTTGAAATTTTTGAAAAGTAAGAAAG
*
511630 GTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGGCCATCAGTAATTCTTTCG
130 GTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTC-GGGCCATCAGTAAGTCTTTCG
* * * * * *
511695 AGCATAATGCTTAAATCCTTCGGGTTATCTATAAGCCTTTCGAGCAATATGATAAGTCCTTTGGG
194 AGCATGATGCTTAAATCATTTGGGTAATCTGTAAGCCTTTCGAGCAATATGATAAGT-CTTTAGG
* * *
511760 CCATCTATAAGACCTTCGGGTAGGATGTTTTCACATGATTTCAAAAAATTAGAAAGGTTTCTCAT
258 CCATCAATAAGACCTTCGGGTAGGATGTTTTCACATGATTTCAAAAAATGAGAAAAGTTTCTCAT
* * * *
511825 TTGAATATGAAATTTGAATTTTTGAAAAGTATGAAAGGTTTCTTACCTAGTAAACTATTATCAAA
323 TTAAATCTGAAATTTGAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAATAAACTATT-TCAAA
* * * *
511890 ATTGGTAAGTCCTTCAGGCCATCAGTTAGTCTTTCAAGCATGGTGGTTAAATCTTCCGGGTCATC
387 ATTGGTAAGTCCTTCAGGCCATCAGTAAGTCTTTCAAGCATGATGCTTAAATCCTCCGGGTCATC
*
511955 TAT
452 TGT
* * * * * * * *
511958 ATGCCTTTCGAGTAAGATGATAAGTCCTTCGGGCTATTCATAAGGCCTTCGAGTATGATATTTTC
1 AAGCCTTTCGAGCAAGATGATAAGTCCTTCGCGCCATCCATAAGACCTTCGGGTATGATGTTTTC
512023 GCATGATTTC
Statistics
Matches: 844, Mismatches: 127, Indels: 41
0.83 0.13 0.04
Matches are distributed among these distances:
456 243 0.29
457 147 0.17
458 4 0.00
463 4 0.00
465 62 0.07
466 230 0.27
467 109 0.13
468 37 0.04
469 8 0.01
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (454 bp):
AAGCCTTTCGAGCAAGATGATAAGTCCTTCGCGCCATCCATAAGACCTTCGGGTATGATGTTTTC
ATGTAAAAATGAGAAAGGTTTCTCATTTAAACCTGAAATTTGAAATTTTTGAAAAGTAAGAAAGG
TTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAG
CATGATGCTTAAATCATTTGGGTAATCTGTAAGCCTTTCGAGCAATATGATAAGTCTTTAGGCCA
TCAATAAGACCTTCGGGTAGGATGTTTTCACATGATTTCAAAAAATGAGAAAAGTTTCTCATTTA
AATCTGAAATTTGAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAATAAACTATTTCAAAATTG
GTAAGTCCTTCAGGCCATCAGTAAGTCTTTCAAGCATGATGCTTAAATCCTCCGGGTCATCTGT
Found at i:512593 original size:21 final size:21
Alignment explanation
Indices: 512567--512608 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
512557 AGGGTCATTT
512567 ATAAGTCTTTCGAGAAAGATG
1 ATAAGTCTTTCGAGAAAGATG
* *
512588 ATAAGTCTTTTGAGCAAGATG
1 ATAAGTCTTTCGAGAAAGATG
512609 TTTTCACATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.31
Consensus pattern (21 bp):
ATAAGTCTTTCGAGAAAGATG
Found at i:513432 original size:22 final size:21
Alignment explanation
Indices: 513406--513446 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
513396 GCTACGGAAT
513406 TGATGGTCTTGATGGATGAAGA
1 TGATGGTCTTGAT-GATGAAGA
*
513428 TGATGGTGTTGATGATGAA
1 TGATGGTCTTGATGATGAA
513447 ATGGAGATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.27, C:0.02, G:0.37, T:0.34
Consensus pattern (21 bp):
TGATGGTCTTGATGATGAAGA
Found at i:517638 original size:5 final size:5
Alignment explanation
Indices: 517623--517676 Score: 58
Period size: 5 Copynumber: 10.6 Consensus size: 5
517613 TCTTTTTGAA
*
517623 TTTCTT TTTCT TTTCT TTTCT TTT-T TTTCT GATTT-T TGTCT TTTCT
1 TTTC-T TTTCT TTTCT TTTCT TTTCT TTTCT --TTTCT TTTCT TTTCT
517669 TTTCT TTT
1 TTTCT TTT
517677 TTGCACTCCA
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
4 6 0.14
5 28 0.67
6 5 0.12
7 3 0.07
ACGTcount: A:0.02, C:0.15, G:0.04, T:0.80
Consensus pattern (5 bp):
TTTCT
Found at i:517651 original size:25 final size:27
Alignment explanation
Indices: 517623--517678 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 27
517613 TCTTTTTGAA
517623 TTTC-TTTT-TCTTTTCTTTTCTTTTT
1 TTTCTTTTTGTCTTTTCTTTTCTTTTT
517648 TTTCTGATTTTTGTCTTTTCTTTTCTTTTT
1 TTTC---TTTTTGTCTTTTCTTTTCTTTTT
517678 T
1 T
517679 GCACTCCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 4 0.15
29 4 0.15
30 18 0.69
ACGTcount: A:0.02, C:0.14, G:0.04, T:0.80
Consensus pattern (27 bp):
TTTCTTTTTGTCTTTTCTTTTCTTTTT
Found at i:517968 original size:21 final size:21
Alignment explanation
Indices: 517929--517968 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
517919 AAGGAAGATT
*
517929 AATGAAATGATAAAGATAAGG
1 AATGAAATGATAAAAATAAGG
517950 AATGAAATGA-AATAAATAA
1 AATGAAATGATAA-AAATAA
517969 AGGATAGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.62, C:0.00, G:0.17, T:0.20
Consensus pattern (21 bp):
AATGAAATGATAAAAATAAGG
Found at i:518484 original size:19 final size:20
Alignment explanation
Indices: 518456--518495 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
518446 GGATAATAAT
518456 ATAAGTAATGAAAAGAAATA
1 ATAAGTAATGAAAAGAAATA
* *
518476 ATAAG-AATGATATGAAATA
1 ATAAGTAATGAAAAGAAATA
518495 A
1 A
518496 ACAAAAGGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.23
Consensus pattern (20 bp):
ATAAGTAATGAAAAGAAATA
Found at i:518947 original size:19 final size:20
Alignment explanation
Indices: 518906--518956 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
518896 GAAACCCCTT
*
518906 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTTAA
518926 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
518945 TGAAGATACATG
1 TGAAAATACATG
518957 CTCTTGGATG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:519801 original size:30 final size:31
Alignment explanation
Indices: 519762--519821 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
519752 ACATGCTGCC
**
519762 ATGATATCTAAATGATATGTAAACATAATAA
1 ATGATATCTAAAACATATGTAAACATAATAA
519793 ATGA-ATCTAAAACATATGTAAACATAATA
1 ATGATATCTAAAACATATGTAAACATAATA
519822 TAAAGCTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.30
Consensus pattern (31 bp):
ATGATATCTAAAACATATGTAAACATAATAA
Found at i:521079 original size:27 final size:24
Alignment explanation
Indices: 521049--521113 Score: 69
Period size: 23 Copynumber: 2.6 Consensus size: 24
521039 AAGTTATTAT
*
521049 AATAACCATATATATTATATGTATGAA
1 AATAACCATATATATAATAT-T-TG-A
*
521076 AATAACTATAT-TATAATATTTGA
1 AATAACCATATATATAATATTTGA
*
521099 AATAAACATATATAT
1 AATAACCATATATAT
521114 GTGTAAAGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
23 10 0.30
24 5 0.15
25 1 0.03
26 7 0.21
27 10 0.30
ACGTcount: A:0.51, C:0.06, G:0.05, T:0.38
Consensus pattern (24 bp):
AATAACCATATATATAATATTTGA
Found at i:521239 original size:3 final size:3
Alignment explanation
Indices: 521231--521291 Score: 86
Period size: 3 Copynumber: 19.7 Consensus size: 3
521221 CGGTTATTTG
521231 TTA TTA TTA TTAA TTA TTA TTA TTA TTA TTAA TTA TTA TTA TTA TTA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA
* *
521278 ATA ATA TTA TTA TT
1 TTA TTA TTA TTA TT
521292 TCATTTTTTT
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
3 48 0.89
4 6 0.11
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:521255 original size:19 final size:19
Alignment explanation
Indices: 521231--521291 Score: 106
Period size: 19 Copynumber: 3.3 Consensus size: 19
521221 CGGTTATTTG
521231 TTATTATTATTAATTATTA
1 TTATTATTATTAATTATTA
521250 TTATTATTATTAATTATTA
1 TTATTATTATTAATTATTA
*
521269 TTATTATTAATAA-TATTA
1 TTATTATTATTAATTATTA
521287 TTATT
1 TTATT
521292 TCATTTTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
18 10 0.24
19 31 0.76
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATTATTATTAATTATTA
Found at i:522180 original size:11 final size:11
Alignment explanation
Indices: 522164--522189 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
522154 AGTATTAAGT
522164 AGTATTTATAG
1 AGTATTTATAG
522175 AGTATTTATAG
1 AGTATTTATAG
522186 AGTA
1 AGTA
522190 AGTTAGAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.42
Consensus pattern (11 bp):
AGTATTTATAG
Found at i:523248 original size:19 final size:19
Alignment explanation
Indices: 523224--523270 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
523214 ATGCATGCAT
*
523224 GAGAAAATCATTTGAATAA
1 GAGAAAATCATTTGAAGAA
523243 GAGAAAATCATTTGAAGAA
1 GAGAAAATCATTTGAAGAA
523262 GAGAAAATC
1 GAGAAAATC
523271 CATTAAATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.53, C:0.06, G:0.19, T:0.21
Consensus pattern (19 bp):
GAGAAAATCATTTGAAGAA
Found at i:524911 original size:231 final size:232
Alignment explanation
Indices: 523507--525384 Score: 1894
Period size: 231 Copynumber: 8.2 Consensus size: 232
523497 TTTATAAATT
* * *
523507 AAAAAATGAGAAAGGTTTCTCATTTAAA-C------TTGAAATTTCTGAAAAGAAAGAAA-AGTT
1 AAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGAAAGA-TT
* *
523564 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTATTTCAAGCA
65 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCA
* * *
523629 TGATGCTTAAATCCTTCAGGTCATCTGTAAGCCTCTCCAGCAAGATGAT-AGTCCTTCG-GCCAT
130 TGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGAGCCAT
* * * *
523692 CTATAAGACCTTCTGGCAGGATGTTTTCACATGACTCTT-
195 CCATAAGACCTTCAGGTAGGATGTTTTCACGTGA-T-TTC
* * *
523731 AAAAAATGAGAAAGGTTTCTCA--T---TC--AAATATGAAA--TTTGAAAAGTAAGAAAGGTTT
1 AAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGAAAGATTT
* * * * *
523787 CTTACCTCGTAAACTATTTTCAAAATTGGTAAGGCCTTCGGGCCATCAGTAAGTATTTCGATCAT
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCAT
* * * *
523852 GATGCTTAAAT-TTTTGGGTCATCTGTAAGCCTTTCAAGCAAGATGATATGTCCTTCGAGCCATC
131 GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGAGCCATC
* * * * *
523916 CATAAGACCTTCGGGCAGGATATTTTCACGT-CTCTC
196 CATAAGACCTTCAGGTAGGATGTTTTCACGTGATTTC
* * * * *
523952 GAAAAATTAGAAAGGTTTCCCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGATATG-TT
1 AAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGA-AAGATT
* * * *
524016 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGCCCTTCGGGCAATTAGTAAGTCTTTTGAGCA
65 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCA
* * * * *
524081 TGATGCTTAAATCCTTCAGGTCATCTGTAAGCCTTTCGAGCAAGATGATAGGTCATTCGTGGCAT
130 TGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGAGCCAT
*
524146 CCATAAGA-CTTC-GGTTAGGAT-TTTTCATGTGATTTC
195 CCATAAGACCTTCAGG-TAGGATGTTTTCACGTGATTTC
* * * ** * * *
524182 AAAAAATGAGAAATGTTTCTAATTTAAATTTGAAATTAAAAATTTTTGAATAGCAAGAAAGGTTT
1 AAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGAAAGATTT
* ** * * * *
524247 CTTACCTAGTAAACTATTTCCGAAATTAATAAGTCCTTTGGACTAT-AGTAAGACTTTCGAGCAT
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCAT
* * ** * * ** *
524311 AACGCTTAAATTTTTTGGGTCATCTGTAAGTCTTTTAAGCAAGATGATAAGACCATT-GAGCCAT
131 GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCC-TTCGAGCCAT
* * * * * * * *
524375 CCAAAAGTCCTTCGGGCAAGATTTTTTCACATG-TCTCTT
195 CCATAAGACCTTCAGGTAGGATGTTTTCACGTGAT-T-TC
* * * **
524414 GAAAAATGAG-AAAGACTTCTCATTTAAATCTGAAATTTGAAATTTTTGTAAAGTAAGAAAGCGT
1 AAAAAATGAGAAAAG-TTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGAAAGATT
* * * *
524478 TCTTACCTAGTAAACTATTT-CAAAATTGGTAAGCCCTTTGGGCCATTAGTAAGTCTTTCAAGCA
65 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCA
* * * * * * * *
524542 CGATG-TTTAA-GCTCCAGGTCATCTGTAAGCGTTTCGAGCAAGATGATAAGTCCTTCGGGACAT
130 TGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGAGCCAT
* * *
524605 CTATAAGACCTTCAGGTATGAT-TTTTCATGTGATTTC
195 CCATAAGACCTTCAGGTAGGATGTTTTCACGTGATTTC
* * * *
524642 AAAAAATGAG-AAAGATATCTCATTTAAATCTAAAATTTGAAATTTTTGAAAAGTCAGGAAGATT
1 AAAAAATGAGAAAAG-TTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGAAAGATT
* * * * * * * *
524706 TCTTATCTGGTAAACTATTTCCAAATTTGGTTAGTCCTTCGAGTCATCAGTAAGTCTTTCGAACG
65 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCA
* * * * * * *
524771 TGATGCTTAAATCCTTTGGGTCATTTATAA-CTCTTTCGAACAA-TTGCTAAGTCATTCGAGCCA
130 TGATGCTTAAATCCTTCGGGTCATCTGTAAGC-CTTTCGAGCAAGATGATAAGTCCTTCGAGCCA
* *
524834 TCAATAAGACCTTCAGGTAGGATGTTTTCACATGATTTC
194 TCCATAAGACCTTCAGGTAGGATGTTTTCACGTGATTTC
* * * *
524873 AAAAAATGAGAAAAGTTTCTCATTTATATCTGAAATTTGAATTTTTTGAAAAATAAGAAAGGTTT
1 AAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGAAAGATTT
* * * * * * * *
524938 CTTACCTAGTAAACTATTTCTAAAATTTGTAAGTCATTCGGGACATCAATAAGCCTTTTGAGCTT
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCAT
* * * *
525003 GATGCTTAAATCCTTCGTGTCATCCGTAAGCCTTTTGAGCAAGATGATAAGTCCTTCGATCCATC
131 GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGAGCCATC
** *
525068 CATAAGACCTTCGCATCTA--ATGTTTTCACGTTATTTC
196 CATAAGACCTT--CAGGTAGGATGTTTTCACGTGATTTC
* * * * * *
525105 AAAAGATGAGGAAAGTTTC-CATTTAAAACTGAAATTTGAAATTTTTGAAAAGTATGAAAAATGT
1 AAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGAAAGATTT
* * **
525169 CTTACCTAGTAAGCTATTTGCAAAATTGGTAAGTTTTTCGGGCCATCAGTAAGTCTTTCGAGCAT
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCAT
* * ** * * * *
525234 GATACTTAAATCCTTCGGGTCATCTCTAAGTGTTTTGAGCAAGATGATAAGTCCTTTGGGCAATC
131 GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGAGCCATC
* * *
525299 CATAAGACCTTCGGGTATGATATTTTCACGTGATTTC
196 CATAAGACCTTCAGGTAGGATGTTTTCACGTGATTTC
* * * *
525336 AAAAGATGAGGAAAGTTTATCATTTAAAACT-ATAATTTGAAATTTTTGA
1 AAAAAATGAGAAAAGTTTCTCATTTAAATCTGA-AATTTGAAATTTTTGA
525385 TCAGTAAGTA
Statistics
Matches: 1360, Mismatches: 247, Indels: 86
0.80 0.15 0.05
Matches are distributed among these distances:
220 2 0.00
221 51 0.04
222 97 0.07
223 34 0.03
224 27 0.02
226 2 0.00
228 83 0.06
229 133 0.10
230 294 0.22
231 454 0.33
232 179 0.13
234 4 0.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Consensus pattern (232 bp):
AAAAAATGAGAAAAGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGAAAGATTT
CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCAT
GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGAGCCATC
CATAAGACCTTCAGGTAGGATGTTTTCACGTGATTTC
Done.