Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008531.1 Hibiscus syriacus cultivar Beakdansim tig00111409_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3817888
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 19
Found at i:525954 original size:628 final size:632
Alignment explanation
Indices: 524751--525955 Score: 1534
Period size: 628 Copynumber: 1.9 Consensus size: 632
524741 CCTTCGAGTC
* * * *
524751 ATCAGTAAGTCTTTCGAACGTGATGCTTAAATCCTTTGGGTCATTTATAACTCTTTCGAACAATT
1 ATCAGTAAGTATTTCGAACATGATGCTTAAATCCTTTAGGTCATTTATAAC-CTTTCGAACAAAT
* *
524816 GCTAAGTCATTCGAGCCATCAATAAGACCTTCAGGTAGGATGTTTTCACATGATTTCAAAAAATG
65 GATAAGTCATTCGAGCCATCAATAAGACCTTCAGGTAGGATGTTTTCACACGATTTCAAAAAATG
* *
524881 AGAAAAGTTTCTCATTTATATCTGAAATTTGAATTTTTTGAAAAATAAGAAAGGTTTCTTACCTA
130 AGAAAAGTTTCTCATTTAAATATGAAATTTGAATTTTTTGAAAAATAAGAAAGGTTTCTTACCTA
* * *
524946 GTAAACTATTTCTAAAATTTGTAAGTCATTCGGGACATCAATAAGCCTTTTGAGCTTGATGCTTA
195 GTAAACTATTTCTAAAATTGGTAAGCCATTCGGGACATCAATAAGCCTTTTGAGCATGATGCTTA
* * * * *
525011 AATCCTTCGTGTCATCCGTAAGCCTTTTGAGCAAGATGATAAGTCCTTCGATCCATCCATAAGAC
260 AATCCGTCGGGTCATCCGTAAGACTTTCGAGCAAGATGATAAGTCATTCGATCCATCCATAAGAC
** * *
525076 CTTCGCATCTAATGTTTTCACGTTATTTCAAAAGATGAGGAAAGTTTCCATTTAAAACTGAAATT
325 CTTCGCATAGAATGATTTCACGTGATTTCAAAAGATGAGGAAAGTTTCCATTTAAAACTGAAATT
* * * * *
525141 TGAAATTTTTGAAAAGTATGAAAAATGTCTTACCTAGTAAGCTATTTGCAAAATTGGTAAGTTTT
390 TGAAATTTTTGAAAAGCAAGAAAAATGTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTT
* * * **
525206 TCGGGCCATCAGTAAGTCTTTCGAGCATGATACTTAAATCCTTCGGGTCATCTCTAAGTGTTTTG
455 TCGGGCCATCAGTAAATCTTTCGAGCATGACACTTAAATCCTTCGGGTCATCTATAAGCCTTTTG
* * ** * * * *
525271 AGCAAGATGATAAGTCCTTTGGGCAATCCATAAGACCTTCGGGTATGATATTTTCACGTGATTTC
520 AGCAAGACGATAAGACCTTCAGGCAATCCAAAAGACCTTCGGGCAGGAAATTTTCACGTGATTTC
525336 AAAAGATGAGGAAAGTTTATCATTTAAAACTATAATTTGAAATTTTTG
585 AAAAGATGAGGAAAGTTTATCATTTAAAACTATAATTTGAAATTTTTG
* * * *
525384 ATCAGTAAGTATTTCGATCATGATGCTTAAAT-TTTTCAGGTCATTTGTAA-CTTTCGAGCAAGA
1 ATCAGTAAGTATTTCGAACATGATGCTTAAATCCTTT-AGGTCATTTATAACCTTTCGAACAA-A
* * ** *
525447 TGATAAGTCCTTCGAGCCATCCATAAGACCTTTGGGTAGGATGTTTTCACACG-TCTCTCGAAAA
64 TGATAAGTCATTCGAGCCATCAATAAGACCTTCAGGTAGGATGTTTTCACACGAT-T-TCAAAAA
* * * * *
525511 ATGAGAAAGGTTTCTCATTTAAATATGATATTTGTAA-TTTTTGAAAAGTAAGATATGTTTCTTA
127 ATGAGAAAAGTTTCTCATTTAAATATGAAATTTG-AATTTTTTGAAAAATAAGAAAGGTTTCTTA
* * * * *
525575 CCTAGTAAACTATTTC-CAAATTGGTAAGCCCTTCGGG-CAATTAGTAAGTCTTTTGAGCATGAT
191 CCTAGTAAACTATTTCTAAAATTGGTAAGCCATTCGGGAC-ATCAATAAGCCTTTTGAGCATGAT
* * * *
525638 GCTTAAATTCGTCGGGTCATCTGTAAGACTTTCGAGCAAGATGATAGGTCATTTG-TGCCATCCA
255 GCTTAAATCCGTCGGGTCATCCGTAAGACTTTCGAGCAAGATGATAAGTCATTCGAT-CCATCCA
** * * * *
525702 TAAGA-CTTCGGGTAGGAT-ATTTCACGTGATTTCAAAA-ATGA-GAAATTTTTCATTTAAATCT
319 TAAGACCTTCGCATAGAATGATTTCACGTGATTTCAAAAGATGAGGAAAGTTTCCATTTAAAACT
** * *
525763 GAAATTTGAAATTTTTGAAAAGCAAGAAAGGTTTCTTATCTAGTAAACTATTTCCAAAATTGGTA
384 GAAATTTGAAATTTTTGAAAAGCAAGAAAAATGTCTTACCTAGTAAACTATTTCCAAAATTGGTA
* * ** **
525828 AGTCCTTT-GGGCCATCAGTAAATCTTTTGAGCATGACGCTTAAATTTTTTTGGTCATCTATAAG
449 AGT-CTTTCGGGCCATCAGTAAATCTTTCGAGCATGACACTTAAATCCTTCGGGTCATCTATAAG
* *
525892 CCTTTTGAGCAAGACGATAAGACCTTCAGGCCATCTAAAAGACCTTCGGGCAGGAAATTTTCAC
513 CCTTTTGAGCAAGACGATAAGACCTTCAGGCAATCCAAAAGACCTTCGGGCAGGAAATTTTCAC
525956 ATGTCTATTG
Statistics
Matches: 485, Mismatches: 79, Indels: 21
0.83 0.14 0.04
Matches are distributed among these distances:
628 176 0.36
629 7 0.01
630 17 0.04
631 21 0.04
632 146 0.30
633 116 0.24
634 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (632 bp):
ATCAGTAAGTATTTCGAACATGATGCTTAAATCCTTTAGGTCATTTATAACCTTTCGAACAAATG
ATAAGTCATTCGAGCCATCAATAAGACCTTCAGGTAGGATGTTTTCACACGATTTCAAAAAATGA
GAAAAGTTTCTCATTTAAATATGAAATTTGAATTTTTTGAAAAATAAGAAAGGTTTCTTACCTAG
TAAACTATTTCTAAAATTGGTAAGCCATTCGGGACATCAATAAGCCTTTTGAGCATGATGCTTAA
ATCCGTCGGGTCATCCGTAAGACTTTCGAGCAAGATGATAAGTCATTCGATCCATCCATAAGACC
TTCGCATAGAATGATTTCACGTGATTTCAAAAGATGAGGAAAGTTTCCATTTAAAACTGAAATTT
GAAATTTTTGAAAAGCAAGAAAAATGTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTT
CGGGCCATCAGTAAATCTTTCGAGCATGACACTTAAATCCTTCGGGTCATCTATAAGCCTTTTGA
GCAAGACGATAAGACCTTCAGGCAATCCAAAAGACCTTCGGGCAGGAAATTTTCACGTGATTTCA
AAAGATGAGGAAAGTTTATCATTTAAAACTATAATTTGAAATTTTTG
Found at i:526384 original size:232 final size:230
Alignment explanation
Indices: 525384--526837 Score: 1358
Period size: 233 Copynumber: 6.3 Consensus size: 230
525374 GAAATTTTTG
* * ** * * *
525384 ATCAGTAAGTATTTCGATCATGATGCTTAAATTTTTCAGGTCATTTGTAA--CTTTCGAGCAAGA
1 ATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGA
* * * * *
525447 TGATAAGTCCTTCGAGCCATCCATAAGACCTTTGGGTAGGATGTTTTCACACGT-CTCTCGAAAA
66 TGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTT--CACGTGATTTCAAAAA
* * * * *
525511 ATGAGAAAGGTTTCTCATTTAAATATGATATTTGTAATTTTTGAAAAGTAAGATATGTTTCTTAC
129 ATGA-AAAGATTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGA-AGGTTTCTTAC
* *
525576 CTAGTAAACTATTTCC-AAATTGGTAAGCCCTTCGGGCA
192 CTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCC
* * * * * *
525614 ATTAGTAAGTCTTTTGAGCATGATGCTTAAATTCGTCGGGTCATCTGTAAGACTTTCGAGCAAGA
1 ATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGA
* * * * *
525679 TGATAGGTCATTTGTGCCATCCATAAGA-CTTCGGGTAGGAT-ATTTCACGTGATTTC-AAAAAT
66 TGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAAT
* * * *
525741 GAGAA-ATTTTTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGCAAGAAAGGTTTCTTATCTA
131 GAAAAGATTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAG-AAGGTTTCTTACCTA
*
525805 GTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCC
195 GTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCC
* * * ** ** * **
525841 ATCAGTAAATCTTTTGAGCATGACGCTTAAATTTTTTTGGTCATCTATAAGCCTTTTGAGCAAGA
1 ATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGA
* * * * * * ** * ** *
525906 CGATAAGACCTTCAGGCCATCTAAAAGACCTTCGGGCAGGAAATTTTCACATG-TCTATTGATAA
66 TGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCACGTGAT-T-TCAAAAA
* * * * * *
525970 ATGTGACATATTTCTCATTTAAATCTGAAATTTTAAATTTTTGTAAACTAAGAAAGGTTTCTTAC
129 ATG-AAAAGATTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAG-AAGGTTTCTTAC
* * *
526035 CTAGTAAACTGTTTACAAAATTGGTAAGCCCTTCGGGCC
192 CTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCC
* * * * * * * * *
526074 ATTAGTAATTCTTTCAAGAATGATGTTTAAATCTTTCAGGTCATCTCTAAGCCTTTCGAA-CTAG
1 ATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTC-AAGCAAG
* *
526138 ATGATAAGTCCTTCGGGCCATCTATAAGACCTTCGGGTTGGATGTTTTCACGTGATTTCAAAAAA
65 ATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAA
* ** *
526203 TGCAAAAGATTTCTTATTTAAATCCAAAATTTGAAATTTTTGAAAAGTCAGAAGGATTTCTTACC
130 TG-AAAAGATTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGAAGG-TTTCTTACC
* * ** * *
526268 TAGTAAACTATTTCCAAATTTTGTGGTGTCATTAGGGCC
193 TAGTAAACTATTTCCAAAATTGGT-AAGTCCTTCGGGCC
* * * * *
526307 ATGAGTAAGTCTTTCCAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGGCTTTCAACCAA-T
1 ATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGA
* * * * * * *
526371 TGATAAGTCCTTCGAGCCATCAATAAGACCTTCAGGTATGATATTTTCACATGATTTCAGAAAAT
66 TGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCA-AAAAA
* * *
526436 TAGAAAAG-TTTCTCATTTAAATATGAAATTTGAATTTTTTTGACAAGTAAGAATGGTTTCTTAC
130 T-GAAAAGATTTCTCATTTAAATCTGAAATTTGAA-ATTTTTGAAAAGTAAGAA-GGTTTCTTAC
* * ** *
526500 ATAGTAAACTATTTCTAAAATTGGTAAGTCAGTCGGACC
192 CTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCC
* * * * *
526539 ATCAATAAGTCTTTCGAGCATGATGCTTAAATCCTTTGCGTCATCTGTAAGCCTTTTTAA-CATG
1 ATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCC-TTTCAAGCAAG
** * * * * * *
526603 ATGATAAGTTTTTCGGGCCATCCATAATACATTCGGGTATGATGTTTTAAGGTGATTTCAAAAGA
65 ATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAA
* * *
526668 TGAGGAA-ATTT-TC-------TC----ATTTTAAATTTTTGAAAAGTAAGAAAGTGTTCTTACC
130 TGA-AAAGATTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGAAGGT-TTCTTACC
* *
526720 TAGTAAACTATTTCCAAAATTGGTAAGTCTTTCGAGCC
193 TAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCC
** * ** *
526758 ATCAGTAAGTCTTTCGAGCATGATATTTAAATCATTCGGGTCATCTGTAAGAGTTTCGAGCAAGA
1 ATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGA
*
526823 TGATAAGTCTTTCGG
66 TGATAAGTCCTTCGG
526838 CCAATCAAAA
Statistics
Matches: 1004, Mismatches: 193, Indels: 65
0.80 0.15 0.05
Matches are distributed among these distances:
218 6 0.01
219 119 0.12
220 6 0.01
224 1 0.00
226 62 0.06
227 96 0.10
228 25 0.02
229 12 0.01
230 46 0.05
231 26 0.03
232 255 0.25
233 345 0.34
234 5 0.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.36
Consensus pattern (230 bp):
ATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGA
TGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAAT
GAAAAGATTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGAAGGTTTCTTACCTAG
TAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCC
Found at i:526401 original size:465 final size:455
Alignment explanation
Indices: 525384--526845 Score: 1470
Period size: 465 Copynumber: 3.2 Consensus size: 455
525374 GAAATTTTTG
* * *
525384 ATCAGTAAGTATTTCGATCATGATGCTTAAATTTTTCAGGTCATTTGTAA-CTTTCGAGCAAGAT
1 ATCAGTAAGTCTTTCGAGCATGATGCTTAAATTTTTCAGGTCATCTGTAAGCTTTCGAGCAAGAT
* * * * *
525448 GATAAGTCCTTCGAGCCATCCATAAGACCTTTGGGTAGGATGTTTTCACACGTCTCTCGAAAAAT
66 GATAAGTCCTTCGAGCCATCAATAAGACCTTCGGGTAGGATATTTTCACATGTCT-TAG-AAAAT
* * * * * *
525513 GAGAAAGGTTTCTCATTTAAATATGATATTTGTAATTTTTGAAAAGTAAGATATGTTTCTTACCT
129 GTGAAA-ATTTCTCATTTAAATATGAAATTT-TAATTTTTGTAAAGTAAGAAAGGTTTCTTACCT
* * *
525578 AGTAAACTATTTCCAAATTGGTAAGCCCTTCGGGCAATTAGTAAGTCTTTTGAGCATGATGCTTA
192 AGTAAACTATTTCAAAATTGGTAAGCCCTTCGGGCCATTAGTAAGTCTTTCGAGCATGATGCTTA
* * * * * *
525643 AAT-TCGTCGGGTCATCTGTAAGACTTTCGAGCAAGATGATAGGTCATTTGTGCCATCCATAAGA
257 AATCT-TTC-GGTCATCTGTAAGCCTTTCGAAC-AGATGATAAGTCATTCGGGCCATCCATAAGA
* * * **
525707 -CTTCGGGTAGGAT-ATTTCACGTGATTTC-AAAAATGAGAAATTTTTCATTTAAATCTGAAATT
319 CCTTCGGGTTGGATGTTTTCACGTGATTTCAAAAAATGAAAAATTTTTCATTTAAATCCAAAATT
* *
525769 TGAAATTTTTGAAAAGCAAGAAAGGTTTCTTATCTAGTAAACTATTTCCAAAATTGGTAAGTCCT
384 TGAAATTTTTGAAAAGCAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCAT
*
525834 TTGGGCC
449 TAGGGCC
* * * ** * *
525841 ATCAGTAAATCTTTTGAGCATGACGCTTAAATTTTTTTGGTCATCTATAAGCCTTTTGAGCAAGA
1 ATCAGTAAGTCTTTCGAGCATGATGCTTAAATTTTTCAGGTCATCTGTAAG-CTTTCGAGCAAGA
* * * * *
525906 CGATAAGACCTTC-AGGCCATCTAA-AAGACCTTCGGGCAGGAAATTTTCACATGTCTATTGATA
65 TGATAAGTCCTTCGA-GCCATC-AATAAGACCTTCGGGTAGGATATTTTCACATGTCT-TAGA-A
* * *
525969 AATGTGACATATTTCTCATTTAAATCTGAAATTTTAAATTTTTGTAAACTAAGAAAGGTTTCTTA
126 AATGTGA-AAATTTCTCATTTAAATATGAAATTTT-AATTTTTGTAAAGTAAGAAAGGTTTCTTA
* * * *
526034 CCTAGTAAACTGTTTACAAAATTGGTAAGCCCTTCGGGCCATTAGTAATTCTTTCAAGAATGATG
189 CCTAGTAAACTATTT-CAAAATTGGTAAGCCCTTCGGGCCATTAGTAAGTCTTTCGAGCATGATG
* * * *
526099 TTTAAATCTTTCAGGTCATCTCTAAGCCTTTCGAACTAGATGATAAGTCCTTCGGGCCATCTATA
253 CTTAAATCTTTC-GGTCATCTGTAAGCCTTTCGAAC-AGATGATAAGTCATTCGGGCCATCCATA
526164 AGACCTTCGGGTTGGATGTTTTCACGTGATTTCAAAAAATGCAAAAGATTTCTT-ATTTAAATCC
316 AGACCTTCGGGTTGGATGTTTTCACGTGATTTCAAAAAATG-AAAA-ATTT-TTCATTTAAATCC
* *
526228 AAAATTTGAAATTTTTGAAAAGTC-AG-AAGGATTTCTTACCTAGTAAACTATTTCCAAATTTTG
378 AAAATTTGAAATTTTTGAAAAG-CAAGAAAGG-TTTCTTACCTAGTAAACTATTTCCAAAATTGG
**
526291 TGGTGTCATTAGGGCC
441 T-AAGTCATTAGGGCC
* * ** * * * *
526307 ATGAGTAAGTCTTTCCAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGGCTTTCAACCAA-T
1 ATCAGTAAGTCTTTCGAGCATGATGCTTAAATTTTTCAGGTCATCTGTAA-GCTTTCGAGCAAGA
* *
526371 TGATAAGTCCTTCGAGCCATCAATAAGACCTTCAGGTATGATATTTTCACATGAT-TTCAGAAAA
65 TGATAAGTCCTTCGAGCCATCAATAAGACCTTCGGGTAGGATATTTTCACATG-TCTT-AGAAAA
* * *
526435 T-TAGAAAAGTTTCTCATTTAAATATGAAATTTGAATTTTTTTGACAAGTAAGAATGGTTTCTTA
128 TGT-GAAAA-TTTCTCATTTAAATATGAAATTTTAATTTTTGT-A-AAGTAAGAAAGGTTTCTTA
* * ** * * *
526499 CATAGTAAACTATTTCTAAAATTGGTAAGTCAGTCGGACCATCAATAAGTCTTTCGAGCATGATG
189 CCTAGTAAACTATTTC-AAAATTGGTAAGCCCTTCGGGCCATTAGTAAGTCTTTCGAGCATGATG
** **
526564 CTTAAATCCTTT-GCGTCATCTGTAAGCCTTTTTAACATGATGATAAGTTTTTCGGGCCATCCAT
253 CTTAAAT-CTTTCG-GTCATCTGTAAGCCTTTCGAACA-GATGATAAGTCATTCGGGCCATCCAT
* * * * * *
526628 AATACATTCGGGTAT-GATGTTTTAAGGTGATTTCAAAAGATGAGGAAA-TTTTC-------T-C
315 AAGACCTTCGGGT-TGGATGTTTTCACGTGATTTCAAAAAATGA-AAAATTTTTCATTTAAATCC
* *
526683 ---ATTTTAAATTTTTGAAAAGTAAGAAA-GTGTTCTTACCTAGTAAACTATTTCCAAAATTGGT
378 AAAATTTGAAATTTTTGAAAAGCAAGAAAGGT-TTCTTACCTAGTAAACTATTTCCAAAATTGGT
* * *
526744 AAGTCTTTCGAGCC
442 AAGTCATTAGGGCC
** ** * *
526758 ATCAGTAAGTCTTTCGAGCATGATATTTAAATCATTCGGGTCATCTGTAAGAGTTTCGAGCAAGA
1 ATCAGTAAGTCTTTCGAGCATGATGCTTAAATTTTTCAGGTCATCTGTAAG-CTTTCGAGCAAGA
*
526823 TGATAAGTCTTTCG-GCCAATCAA
65 TGATAAGTCCTTCGAGCC-ATCAA
526846 AATTGGTAAG
Statistics
Matches: 835, Mismatches: 130, Indels: 85
0.80 0.12 0.08
Matches are distributed among these distances:
450 1 0.00
451 66 0.08
452 69 0.08
453 2 0.00
455 1 0.00
456 1 0.00
457 41 0.05
458 3 0.00
459 125 0.15
460 99 0.12
461 13 0.02
462 16 0.02
463 20 0.02
464 44 0.05
465 265 0.32
466 68 0.08
467 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (455 bp):
ATCAGTAAGTCTTTCGAGCATGATGCTTAAATTTTTCAGGTCATCTGTAAGCTTTCGAGCAAGAT
GATAAGTCCTTCGAGCCATCAATAAGACCTTCGGGTAGGATATTTTCACATGTCTTAGAAAATGT
GAAAATTTCTCATTTAAATATGAAATTTTAATTTTTGTAAAGTAAGAAAGGTTTCTTACCTAGTA
AACTATTTCAAAATTGGTAAGCCCTTCGGGCCATTAGTAAGTCTTTCGAGCATGATGCTTAAATC
TTTCGGTCATCTGTAAGCCTTTCGAACAGATGATAAGTCATTCGGGCCATCCATAAGACCTTCGG
GTTGGATGTTTTCACGTGATTTCAAAAAATGAAAAATTTTTCATTTAAATCCAAAATTTGAAATT
TTTGAAAAGCAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCATTAGGGCC
Found at i:527327 original size:232 final size:230
Alignment explanation
Indices: 526844--527497 Score: 850
Period size: 230 Copynumber: 2.8 Consensus size: 230
526834 TCGGCCAATC
* * * * *
526844 AAAATTGGTAAGTCTTTCGGGCCATCACTAAGTATTTCGAACATAATGCTTAAATCCTTTGGGTC
1 AAAATTGGTAAGTCTTTCGGGCCATCAATAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTC
* * * * * * * *
526909 ATTTATAAGCCTTTCGACCAA-TTGATAAGGCCATCAAGCCATCAATAAGATCTTCAGGTATGAT
66 A--TCTAAGCCTTTTGAGCAAGATGATAAGTCCTTCGAGCCATCAATAAGACCTTCAGGTATGAT
* * * * * * *
526973 GTTTTCACATAATTTCAAAAAATGAGAAAAGTTTCTCATTTATATCTGAAAA-TTG-ATTTTTTG
129 GTTTTCACGTGATTTCAAAAGATGAGGAAAGTTTCTCATTTAAAACT-AAAATTTGAAATTTTTG
** *
527036 AAAAGTAAGAAAGGTTTCTTACCTAGTAAACTGTTTCT
193 AAAAGTAAGAAAAATTTCTTACCTAGTAAACTATTTCT
* * * *
527074 AAAATTGGTAAATCATTCGGGCCATCAATAAGCCTTTCGAGCATGATGCTTAAATCCTTCGTGTC
1 AAAATTGGTAAGTCTTTCGGGCCATCAATAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTC
* * *
527139 ATCCGTAAGCCTTTTGAGCAAGATGATATGTCCTTCGAGCCATCTATAAGACCTTC-GCATATGA
66 AT-C-TAAGCCTTTTGAGCAAGATGATAAGTCCTTCGAGCCATCAATAAGACCTTCAG-GTATGA
527203 TGTTTTCACGTGATTTCAAAAGATGAGGAAAGTTTCTCATTTAAAACTAAAATTTGAAATTTTTG
128 TGTTTTCACGTGATTTCAAAAGATGAGGAAAGTTTCTCATTTAAAACTAAAATTTGAAATTTTTG
* *
527268 AAAAGTATGAAAAATTTCTTACCTAGTAAACTATTTTT
193 AAAAGTAAGAAAAATTTCTTACCTAGTAAACTATTTCT
* * * *
527306 AAAATTGGTACGTTTTTCGGGCCATCAGTAAGTCTTTCGAGCATGATACTTAAATCCTTCGGGTC
1 AAAATTGGTAAGTCTTTCGGGCCATCAATAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTC
** * *
527371 ATCTAAGTGTTTTGAGCAAGATGATAAGTCCTTCGAGCAATCCATAAGACCTTCAGGTATGAT-T
66 ATCTAAGCCTTTTGAGCAAGATGATAAGTCCTTCGAGCCATCAATAAGACCTTCAGGTATGATGT
*
527435 TTTCACGTGATTTCAAAAGATGAGGAAAGTTTCTCATTTAAAACTATAATTTGAAATTTTTGA
131 TTTCACGTGATTTCAAAAGATGAGGAAAGTTTCTCATTTAAAACTAAAATTTGAAATTTTTGA
527498 TCAGTAAGTA
Statistics
Matches: 370, Mismatches: 47, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
228 1 0.00
229 63 0.17
230 128 0.35
231 79 0.21
232 99 0.27
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35
Consensus pattern (230 bp):
AAAATTGGTAAGTCTTTCGGGCCATCAATAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTC
ATCTAAGCCTTTTGAGCAAGATGATAAGTCCTTCGAGCCATCAATAAGACCTTCAGGTATGATGT
TTTCACGTGATTTCAAAAGATGAGGAAAGTTTCTCATTTAAAACTAAAATTTGAAATTTTTGAAA
AGTAAGAAAAATTTCTTACCTAGTAAACTATTTCT
Found at i:528047 original size:230 final size:230
Alignment explanation
Indices: 527509--528053 Score: 572
Period size: 230 Copynumber: 2.4 Consensus size: 230
527499 CAGTAAGTAC
* * * *
527509 TTCGATCATGATGCTTAAATTTTTCAGGTCACCTGTAAACCTTTCGAGCAAGATGATAAGTCCTT
1 TTCGAGCATGATGCTTAAATTTTTCAGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTT
* * * *
527574 AAAGCCATCCATAAGACCTTTGGACAGGATGTTTTCACACGTCTCTCGAAAAATGAGAAAGGTTT
66 -AAGCCATCCATAAGA-CTTCGGACAGGATGATTT-ACACGTATCTCAAAAAATGAGAAAGGTTT
* * * * * *
527639 CTCATTTAAATATGATATTTGTAATTTTTGAAAAGTATCATATGTTTATTACCTAGTAAACTATT
128 CTCATTTAAATATGAAATTTGAAATTTTTGAAAAGCAACAAAGGTTTATTACCTAGTAAACTATT
* *
527704 TCCAAAATTGGTAAGCCCTTCGGGCAATTAGTAAGTCT
193 TCCAAAATTGGTAAGCCCTTCGGGCAATCAGTAAATCT
* ** * ** * * * * * *
527742 TTTGAGCATGATAATTACATTCGTCGGGTAATCTATAAGTCTTTCAAGCAAGATGATAGGTCATT
1 TTCGAGCATGATGCTTAAATTTTTCAGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTC-CT
** ** * **
527807 TGGGCCATCCATAAGACTTCGGGTAGGAT-ATTT-CACGTGATTTCAAAAAATGAGAAATTTTTC
65 TAAGCCATCCATAAGACTTCGGACAGGATGATTTACACGT-ATCTCAAAAAATGAGAAAGGTTTC
* * * *
527870 TCATTTAAATCTGAAATTTGAAATTTTTGAAAAGCAAGAAAGGTTTCTTATCTAGTAAACTATTT
129 TCATTTAAATATGAAATTTGAAATTTTTGAAAAGCAACAAAGGTTTATTACCTAGTAAACTATTT
* * *
527935 CCAAAATTGGTAAGTCCTTTGGGCCATCAGTAAATCT
194 CCAAAATTGGTAAGCCCTTCGGGCAATCAGTAAATCT
* ** * * *
527972 TTCGAGCATGACGCTTAAATTTTTTTGGTCATCTATAAGCCTTTTGAGCAAGACGATAAGACCTT
1 TTCGAGCATGATGCTTAAATTTTTCAGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTT
* *
528037 CAGTCCATCCAAAAGAC
66 AAG-CCATCCATAAGAC
528054 CTTTGGGCCA
Statistics
Matches: 247, Mismatches: 62, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
229 8 0.03
230 164 0.66
231 3 0.01
232 10 0.04
233 60 0.24
234 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (230 bp):
TTCGAGCATGATGCTTAAATTTTTCAGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTT
AAGCCATCCATAAGACTTCGGACAGGATGATTTACACGTATCTCAAAAAATGAGAAAGGTTTCTC
ATTTAAATATGAAATTTGAAATTTTTGAAAAGCAACAAAGGTTTATTACCTAGTAAACTATTTCC
AAAATTGGTAAGCCCTTCGGGCAATCAGTAAATCT
Found at i:528076 original size:103 final size:103
Alignment explanation
Indices: 527950--528159 Score: 258
Period size: 103 Copynumber: 2.0 Consensus size: 103
527940 ATTGGTAAGT
* * * **
527950 CCTTTGGGCCATCAGTAAATCTTTCGAGCATGACGCTTAAATTTTTTTGGTCATCTATAAGCCTT
1 CCTTTGGGCCATCAGTAAATCTTTCAAGAATGACGCTTAAATCTTTCAGGTCATCTATAAGCCTT
* *
528015 TTGAGCAAGACGATAAGACCTTCAGTCCATCCAAAAGA
66 TTGAACAAGACGATAAGACCTTCAGGCCATCCAAAAGA
** * * *
528053 CCTTTGGGCCATTTGTAAGTCTTTCAAGAATGATGTTTAAATCTTTCAGGTCATCTATAAGCCTT
1 CCTTTGGGCCATCAGTAAATCTTTCAAGAATGACGCTTAAATCTTTCAGGTCATCTATAAGCCTT
* * * * * *
528118 TTGAACTAGATGATAAGTCCTTCGGGCCATCTATAAGA
66 TTGAACAAGACGATAAGACCTTCAGGCCATCCAAAAGA
528156 CCTT
1 CCTT
528160 CGGGTAGGAT
Statistics
Matches: 89, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
103 89 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (103 bp):
CCTTTGGGCCATCAGTAAATCTTTCAAGAATGACGCTTAAATCTTTCAGGTCATCTATAAGCCTT
TTGAACAAGACGATAAGACCTTCAGGCCATCCAAAAGA
Found at i:528780 original size:230 final size:230
Alignment explanation
Indices: 528067--528839 Score: 853
Period size: 232 Copynumber: 3.3 Consensus size: 230
528057 TGGGCCATTT
* ** * * * * *
528067 GTAAGTCTTTCAAGAATGATGTTTAAATCTTTCAGGTCATCTATAAGCCTTTTGAACTAGATGAT
1 GTAAGTCTTTCAAGCATGATACTTAAATCCTTCGGGTCA-CTATAAGCCTTTCGAGCAAGATGAT
* * *
528132 AAGTCCTTCGGGCCATCTATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATG-TG
65 AAGTCTTTCGGGCCATCTATAAGACCTTCGGGTATGATGTTTTCACGTGATTTCAAAAAATGAGG
* ** * * *
528196 AAAGATTTCTTATTTAAATCCAAAATTTGAAATTTTTGAAAAGTCAGAAAGATTTCTTACCTAGT
130 AAA-ATTTCTCATTTAAATCTGAAATTTGAAATTTTTGGAAAGTAAGAAAGGTTTCTTACCTAGT
* ** * *
528261 AAACTATTTCCAAATTTGGTGGTGTCCTTAGGGCCATGA
194 AAACTATTTCCAAAATTGGT-AAGTCCTT-CGGCCATCA
* * * * *
528300 GTAAGTCTTTCGAGCATGATACTTAAATCCTTCGGGTCA-TCGTAAGCCTTTCGACCAA-TTTAT
1 GTAAGTCTTTCAAGCATGATACTTAAATCCTTCGGGTCACT-ATAAGCCTTTCGAGCAAGATGAT
* * * ** *
528363 AAGTCCTTT-GAGCCATCAATAAGACCTTCAGGTATGATGTTTTCATATGATTTAAAAAAACT-A
65 AAGT-CTTTCGGGCCATCTATAAGACCTTCGGGTATGATGTTTTCACGTGATTTCAAAAAA-TGA
* * *
528426 -GAAAAGTTTCTCATTTAAATCTGAAATTTGAATTTGTTTTGACAAGTAAGAATGGTTTCTTACC
128 GGAAAA-TTTCTCATTTAAATCTGAAATTTGAAATT-TTTGGA-AAGTAAGAAAGGTTTCTTACC
* *
528490 TAGTAAACTATTTCTAAAATTGGTAAGTCATTCGGACCATCA
190 TAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGG-CCATCA
* * * **
528532 ATAAGTCTTTCAAGCATGATGA-TTAAATCCTTCGTGTCA-TGTAAGCCTTTTTAGCAAGATGAT
1 GTAAGTCTTTCAAGCATGAT-ACTTAAATCCTTCGGGTCACTATAAGCCTTTCGAGCAAGATGAT
* * * *
528595 AAGTCTTTCGGGCCATCTATAATACCTTCGGGTATGATGTTTTAAGGTGATTTCAAAAGATGAGG
65 AAGTCTTTCGGGCCATCTATAAGACCTTCGGGTATGATGTTTTCACGTGATTTCAAAAAATGAGG
* *
528660 AAATTTTCTCATTTTAAAT-TGAAATTTTAAATTTTTGGAAAGTAAGAAAGGTTTCTTACCTAGT
130 AAAATTTCTCA-TTTAAATCTGAAATTTGAAATTTTTGGAAAGTAAGAAAGGTTTCTTACCTAGT
*
528724 AAACTATTTCCAAAATTGGTAACTCCTTCGAGCCATCA
194 AAACTATTTCCAAAATTGGTAAGTCCTTCG-GCCATCA
* * * * *
528762 GTAAGTCTTTCGAGCATGATATTTAAATCCTTTGGGTTATCTATAAGCGTTTCGAGCAAGATGAT
1 GTAAGTCTTTCAAGCATGATACTTAAATCCTTCGGGTCA-CTATAAGCCTTTCGAGCAAGATGAT
528827 AAGTCTTTCGGGC
65 AAGTCTTTCGGGC
528840 AATCAAAACT
Statistics
Matches: 452, Mismatches: 70, Indels: 37
0.81 0.13 0.07
Matches are distributed among these distances:
229 1 0.00
230 90 0.20
231 108 0.24
232 168 0.37
233 85 0.19
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.36
Consensus pattern (230 bp):
GTAAGTCTTTCAAGCATGATACTTAAATCCTTCGGGTCACTATAAGCCTTTCGAGCAAGATGATA
AGTCTTTCGGGCCATCTATAAGACCTTCGGGTATGATGTTTTCACGTGATTTCAAAAAATGAGGA
AAATTTCTCATTTAAATCTGAAATTTGAAATTTTTGGAAAGTAAGAAAGGTTTCTTACCTAGTAA
ACTATTTCCAAAATTGGTAAGTCCTTCGGCCATCA
Found at i:529418 original size:232 final size:232
Alignment explanation
Indices: 528843--529906 Score: 1188
Period size: 232 Copynumber: 4.6 Consensus size: 232
528833 TTCGGGCAAT
* * * * * * *
528843 CAAAACTGATAAGTCTTTCGGGCCATCACTAAGTATTTCGAA-CATAATGCTTACA-TCCTTTGG
1 CAAAATTGGTAAGTCTTTCGGGCCATCAGTAAGTCTTTC-AAGCATGATACTTA-ATTCCTTCGG
* * * * ** * * *
528906 GTCATTTATAAGCCTTTCGACCAA-TTGATAAGGCCTTCAAGCCATCAATAATACCTTCAGGTAT
64 GTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAT
* * * * * **
528970 GATGTTTTCACATGATTTCAAAAAATGAGAAAAGTTTT-TCATTTAAATCTGAAAATTGATTTTT
129 GATGTTTTCACATGATTTCAAAAGATGAGGAAA-TTTTCTCATTTAAAACTGAAATTTAAAATTT
* * *
529034 TTAAAAAGTAAGAAAGGTTCCTTACCTAGT-AAA-GTTT-
193 TTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTC
* * * * * *
529071 -ATAAATTGGTAAGTCATTCGGGCCATCAATAAGTCTTTCGAGTATGATGA-TTAAATCCTTCGT
1 CA-AAATTGGTAAGTCTTTCGGGCCATCAGTAAGTCTTTCAAGCATGAT-ACTTAATTCCTTCGG
* * * * * *
529134 GTTATCTGTAAGCCTTTTGAGCAAGATTATAACTCCTTCGGGCCATCCATAAGACCATCGGGTAT
64 GTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAT
* *
529199 GATGTTTTCACGTGATTTCAAAAGATGAGGAAATTTTCTCATTTAAAACTGAAATTTGAAATTTT
129 GATGTTTTCACATGATTTCAAAAGATGAGGAAATTTTCTCATTTAAAACTGAAATTTAAAATTTT
* * *
529264 GGAAAAGTAAGAAAGGATTCTTACCTAGTAAACTATTTC
194 TGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTC
*
529303 CAAAATTGGTAAGTCTTTTGGGCCATCAGTAAGTCTTTCAAGCATGATACTTAATTCCTTCGGGT
1 CAAAATTGGTAAGTCTTTCGGGCCATCAGTAAGTCTTTCAAGCATGATACTTAATTCCTTCGGGT
* * *
529368 CATCTGTAAGCGTTTCGAGCAATATGATAAGTCC-TCTGGGCCATCCATAAGACCTTCGGGTATG
66 CATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTC-GGGCCATCCATAAGACCTTCGGGTATG
* * * *
529432 ATGTTTTCACATTATTTCAAAAGATGAGGAAAGTTTCTCATTTAAAAATGAATTTTAAAATTTTT
130 ATGTTTTCACATGATTTCAAAAGATGAGGAAATTTTCTCATTTAAAACTGAAATTTAAAATTTTT
529497 GAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTC
195 GAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTC
* *
529535 CAAAATTGGTAAGTCTTTCGGGCCATCAGTAAGTCCTTCGAGCATGATACTT-ATATCCTTCGGG
1 CAAAATTGGTAAGTCTTTCGGGCCATCAGTAAGTCTTTCAAGCATGATACTTAAT-TCCTTCGGG
* ** * *
529599 TCATCTATAAGCATTTCGAGCAAGATGATAAGTCCTTCGGGAAATCCATAAGACTTTCGGGTGTG
65 TCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTATG
* * * * * *
529664 ATGTTTTCACGTTATTTCAAAAGATTACGAAATTTTCTCATTAAAAACTGTAATTTAAAATTTTT
130 ATGTTTTCACATGATTTCAAAAGATGAGGAAATTTTCTCATTTAAAACTGAAATTTAAAATTTTT
529729 GAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTC
195 GAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTC
* * * * * * * *
529767 GAAAATTGGTAAGTCTTTTGTGCCATCACT-AGATCTTTCGAA-CATAATGCTTAAATCCTTCAG
1 CAAAATTGGTAAGTCTTTCGGGCCATCAGTAAG-TCTTTC-AAGCATGATACTTAATTCCTTCGG
* * * * * * * * *
529830 GT--TTTTTAAGCCTTTTGAGAAAGAGGATAAGTCATTTGGACCATCTATAAGACCTTCGGGT-T
64 GTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAT
*
529892 GGATGTTTTAACATG
129 -GATGTTTTCACATG
529907 TCTCTCGAAA
Statistics
Matches: 712, Mismatches: 106, Indels: 34
0.84 0.12 0.04
Matches are distributed among these distances:
227 3 0.00
228 68 0.10
229 109 0.15
230 59 0.08
231 10 0.01
232 458 0.64
233 5 0.01
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (232 bp):
CAAAATTGGTAAGTCTTTCGGGCCATCAGTAAGTCTTTCAAGCATGATACTTAATTCCTTCGGGT
CATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTATGA
TGTTTTCACATGATTTCAAAAGATGAGGAAATTTTCTCATTTAAAACTGAAATTTAAAATTTTTG
AAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTC
Found at i:529471 original size:801 final size:794
Alignment explanation
Indices: 527629--529644 Score: 2368
Period size: 801 Copynumber: 2.5 Consensus size: 794
527619 TCGAAAAATG
* * * ** * * *
527629 AGAAAGGTTTCTCATTTAAATA-TGATATTTGTAATTTTTGAAAAGTATCATATGTTTATTACCT
1 AGAAAAGTTTCTCATTTAAA-ACTGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCT
* * * * **
527693 AGTAAACTATTTCCAAAATTGGTAAGCCCTTCGGGCAATTAGTAAGTCTTTTGAGCATGATAATT
65 AGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAGTAAGTCTTTCAAGCATGAT-ATT
* * * * *
527758 ACATT-CGTCGGGTAATCTATAAGTCTTTCAAGCAAGATGATAGGTCATTTGGGCCATCCATAAG
129 A-ATTCCTTCGGGTCATCTGTAAG-CTTTCAAGCAAGATGATAAGTCCTTTGGGCCATCCATAAG
* * *
527822 A-CTTCGGGTAGGAT-ATTTCACGTGATTTCAAAAAATGA-GAAATTTTTCTCA-TTTAAATCTG
192 ACCTTCGGGTATGATGTTTTCACGTGATTTCAAAAGATGAGGAAA-TTTTCTCATTTTAAAT-TG
* * *
527883 AAATTTGAAATTTTTGAAAAGCAAGAAAGGTTTCTTATCTAGTAAACTATTTCCAAAATTGGTAA
255 AAATTTTAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAA
* * ** ** * *
527948 GTCCTTTGGGCCATCAGTAAATCTTTCGAGCATGACGCTTAAATTTTTTTGGTCATCTATAAGCC
320 GTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATACTTAAATCCTTTGGGTCATCTATAAGCA
* * * * * * *** *
528013 TTTTGAGCAAGACGATAAGACCTTCAGTCCATCCAAAAGACCTTTGGGCCATTTGTAAGTCTTTC
385 TTTCGAGCAAGATGATAAGTCCTTCGGGCAAT-CAAAAGACCTTTGGGCCATCACTAAGTATTTC
* * * * * **
528078 AAGAATGATGTTTAAATCTTTCAGGTCATCTATAAGCCTTTTGAACTAGATGATAAGTCCTTCGG
449 AAGAATAATGCTTAAATCTTTCAGGTCATCTATAAGCCTTTCGAACCAGATGATAAGGCCTTCAA
* * * *
528143 GCCATCTATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGTGAAAGATTTCTTA
514 GCCATCAATAAGACCTTCAGGTAGGATGTTTTCACATGATTTCAAAAAATGAGAAAGATTTCTTA
* * *
528208 TTTAAATCCAAAATTTGAAATTTTTGAAAAGTCAGAAAGATTTCTTACCTAGTAAACTATTTCCA
579 TTTAAATCCAAAATTTGAAATTTTTAAAAAGTAAGAAAGATTCCTTACCTAGTAAACTATTT-CA
** * * *
528273 AATTTGGTGGTGTCCTTAGGGCCATGAGTAAGTCTTTCGAGCATGATACTTAAATCCTTCGGGTC
643 AATTTGGTGAAGTCATTAGGGCCATCAATAAGTCTTTCGAGCATGATACTTAAATCCTTCGGGTC
* * * *
528338 ATCGTAAGCCTTTCGACCAATTTATAAGTCCTTTGAGCCATCAATAAGACCTTCAGGTATGATGT
708 ATCGTAAGCCTTTCGACCAAATTATAACTCCTTCGAGCCATCAATAAGACCATCAGGTATGATGT
*
528403 TTTCATATGATTTAAAAAAACT
773 TTTCACATGATTTAAAAAAACT
* * * *
528425 AGAAAAGTTTCTCATTTAAATCTGAAATTTGAATTTGTTTTGACAAGTAAGAATGGTTTCTTACC
1 AGAAAAGTTTCTCATTTAAAACTGAAATTTGAA-AT-TTTTGAAAAGTAAGAAAGGTTTCTTACC
* * *
528490 TAGTAAACTATTTCTAAAATTGGTAAGTCATTCGGACCATCAATAAGTCTTTCAAGCATGATGAT
64 TAGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAGTAAGTCTTTCAAGCATGAT-AT
* * ** *
528555 TAAATCCTTCGTGTCA--TGTAAGCCTTTTTAGCAAGATGATAAGT-CTTTCGGGCCATCTATAA
128 TAATTCCTTCGGGTCATCTGTAAG-CTTTCAAGCAAGATGATAAGTCCTTT-GGGCCATCCATAA
* * *
528617 TACCTTCGGGTATGATGTTTTAAGGTGATTTCAAAAGATGAGGAAATTTTCTCATTTTAAATTGA
191 GACCTTCGGGTATGATGTTTTCACGTGATTTCAAAAGATGAGGAAATTTTCTCATTTTAAATTGA
* *
528682 AATTTTAAATTTTTGGAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAC
256 AATTTTAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAG
* * * *
528747 TCCTTCGAGCCATCAGTAAGTCTTTCGAGCATGATATTTAAATCCTTTGGGTTATCTATAAGCGT
321 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATACTTAAATCCTTTGGGTCATCTATAAGCAT
* *
528812 TTCGAGCAAGATGATAAGTCTTTCGGGCAATCAAAACTGATAAGTCTTTCGGGCCATCACTAAGT
386 TTCGAGCAAGATGATAAGTCCTTCGGGCAATCAAAA--G---A-CCTTT-GGGCCATCACTAAGT
* * * *
528877 ATTTCGAA-CATAATGCTTACATCCTTT-GGGTCATTTATAAGCCTTTCG-ACCA-ATTGATAAG
444 ATTTC-AAGAATAATGCTTAAAT-CTTTCAGGTCATCTATAAGCCTTTCGAACCAGA-TGATAAG
* *
528938 GCCTTCAAGCCATCAATAATACCTTCAGGTATGATGTTTTCACATGATTTCAAAAAATGAGAAA-
506 GCCTTCAAGCCATCAATAAGACCTTCAGGTAGGATGTTTTCACATGATTTCAAAAAATGAGAAAG
* ** *
529002 AGTTT-TTCATTTAAATCTGAAAA-TTGATTTTTTTAAAAAGTAAGAAAGGTTCCTTACCTAGTA
571 A-TTTCTT-ATTTAAATC-CAAAATTTGAAATTTTTAAAAAGTAAGAAAGATTCCTTACCTAGTA
* * *
529065 AAGT-TTAT-AAA-TTGGT-AAGTCATTCGGGCCATCAATAAGTCTTTCGAGTATGATGA-TTAA
633 AACTATT-TCAAATTTGGTGAAGTCATTAGGGCCATCAATAAGTCTTTCGAGCATGAT-ACTTAA
* * * * * *
529125 ATCCTTCGTGTTATCTGTAAGCCTTTTGAGCAAGATTATAACTCCTTCGGGCCATCCATAAGACC
696 ATCCTTCGGGTCATC-GTAAGCCTTTCGACCAA-ATTATAACTCCTTCGAGCCATCAATAAGACC
* * * *
529190 ATCGGGTATGATGTTTTCACGTGATTTCAAAAGA-T
759 ATCAGGTATGATGTTTTCACATGATTTAAAAAAACT
* * * *
529225 GAGGAAATTTTCTCATTTAAAACTGAAATTTGAAATTTTGGAAAAGTAAGAAAGGATTCTTACCT
1 -AGAAAAGTTTCTCATTTAAAACTGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCT
* *
529290 AGTAAACTATTTCCAAAATTGGTAAGTCTTTTGGGCCATCAGTAAGTCTTTCAAGCATGATACTT
65 AGTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAGTAAGTCTTTCAAGCATGATA-TT
* * *
529355 AATTCCTTCGGGTCATCTGTAAGCGTTTCGAGCAATATGATAAGTCCTCTGGGCCATCCATAAGA
129 AATTCCTTCGGGTCATCTGTAAGC-TTTCAAGCAAGATGATAAGTCCTTTGGGCCATCCATAAGA
* * * * *
529420 CCTTCGGGTATGATGTTTTCACATTATTTCAAAAGATGAGGAAAGTTTCTCATTTAAAAATG-AA
193 CCTTCGGGTATGATGTTTTCACGTGATTTCAAAAGATGAGGAAATTTTCTCATTTTAAATTGAAA
*
529484 TTTTAAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTCCAAAATTGGTAAGT
258 TTTT-AAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGT
* * * *
529549 CTTTCGGGCCATCAGTAAGTCCTTCGAGCATGATACTTATATCCTTCGGGTCATCTATAAGCATT
322 CCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATACTTAAATCCTTTGGGTCATCTATAAGCATT
*
529614 TCGAGCAAGATGATAAGTCCTTCGGGAAATC
387 TCGAGCAAGATGATAAGTCCTTCGGGCAATC
529645 CATAAGACTT
Statistics
Matches: 1032, Mismatches: 155, Indels: 61
0.83 0.12 0.05
Matches are distributed among these distances:
795 3 0.00
796 64 0.06
797 20 0.02
798 255 0.25
799 156 0.15
800 30 0.03
801 321 0.31
802 10 0.01
803 119 0.12
804 48 0.05
805 6 0.01
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (794 bp):
AGAAAAGTTTCTCATTTAAAACTGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTA
GTAAACTATTTCCAAAATTGGTAAGTCATTCGGGCCATCAGTAAGTCTTTCAAGCATGATATTAA
TTCCTTCGGGTCATCTGTAAGCTTTCAAGCAAGATGATAAGTCCTTTGGGCCATCCATAAGACCT
TCGGGTATGATGTTTTCACGTGATTTCAAAAGATGAGGAAATTTTCTCATTTTAAATTGAAATTT
TAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTT
CGGGCCATCAGTAAGTCTTTCGAGCATGATACTTAAATCCTTTGGGTCATCTATAAGCATTTCGA
GCAAGATGATAAGTCCTTCGGGCAATCAAAAGACCTTTGGGCCATCACTAAGTATTTCAAGAATA
ATGCTTAAATCTTTCAGGTCATCTATAAGCCTTTCGAACCAGATGATAAGGCCTTCAAGCCATCA
ATAAGACCTTCAGGTAGGATGTTTTCACATGATTTCAAAAAATGAGAAAGATTTCTTATTTAAAT
CCAAAATTTGAAATTTTTAAAAAGTAAGAAAGATTCCTTACCTAGTAAACTATTTCAAATTTGGT
GAAGTCATTAGGGCCATCAATAAGTCTTTCGAGCATGATACTTAAATCCTTCGGGTCATCGTAAG
CCTTTCGACCAAATTATAACTCCTTCGAGCCATCAATAAGACCATCAGGTATGATGTTTTCACAT
GATTTAAAAAAACT
Found at i:530425 original size:231 final size:232
Alignment explanation
Indices: 529921--530969 Score: 1069
Period size: 232 Copynumber: 4.5 Consensus size: 232
529911 TCGAAAAATG
* ** * * *
529921 AGAAAGGTTTCTTACATAGTAAACTATTTCCAAAATTGGTAAAACCTTCGGGTCATTAGTTAGTC
1 AGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTC
* * * * *
529986 TTTCGAGCATGATGCTTAAATCCTTTGGGTCTTGTGTAAGCCTTTCGAGCAAGATAATACGTCCT
66 TTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCT
* * *
530051 TCAGGCCATCCATCACACCTTCGGGTAGGTTGTTTT-CATGTGATTTCAAAAAATGAGAAATGTT
131 TCAGGCCATCCATAAGACCTTCGGGTAGGATGTTTTACATGTGA-TTCAAAAAATGAGAAATGTT
* *
530115 TCTCATTTGAATATGAAATTTGGAATTTTTGAAAAGTA
195 TCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTA
* * * * *
530153 TGAAAGGTTTCTTACCTAGTAAACTATTTCAAAAATTGGTAAGTCCTTTGGGCCATCAATAAGAC
1 AGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTC
* ** * * * *
530218 TTTCGAGCATGAT-CTTAATTTTTTTGGGTCATCTGTAAGTCTTTCGAGTAAGATGATAAGACCT
66 TTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCT
* * * * * * * *
530282 TCAGGCCATCAAAAAGTCCTTTGGGTAGGATATTTTCACATGTCG-CTCGAAAAATGACAAATGT
131 TCAGGCCATCCATAAGACCTTCGGGTAGGATGTTTT-ACATGT-GATTCAAAAAATGAGAAATGT
* *
530346 TTCTCATTTAAATCTGAAATTTGAAATTTTTGTAAAGTA
194 TTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTA
* * * *
530385 AGAAAGG-TTCTTACCTAGTAAACTATTTCTAAAATTGGTAAGCCCTTCGGGCAATTAGTAAG-C
1 AGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTC
* * ** * * * *
530448 TTTTCGAGCATGATGTTTAAATCATTCATGTCATATGCAAGCTTTTCGGGC-AGAATGATAAGTC
66 -TTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAG-ATGATAAGTC
* ** * *
530512 ATTTGGGCCATCTATAAGACCTTCGGGTAGGAT-TTTTTCATGTGATTTCAAAAAATGAGAAA-G
129 CTTCAGGCCATCCATAAGACCTTCGGGTAGGATGTTTTACATGTGA-TTCAAAAAATGAGAAATG
* * *
530575 ATTTCTCATTTAAATAT-AGAATTTGAAAATTTTGTAAAGTC
193 -TTTCTCATTTAAATATGA-AATTTGAAATTTTTGAAAAGTA
* * * * **
530616 AGTAAGGTTTCTTACCTAGTAAACTATTTACAAATTTGGTAGGTTATTCGGGCCATCAGTAAGTC
1 AGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTC
* * *
530681 TTTCGAGCATGATGTTTAAATCCTTCGGGCCATCTGTAAGCCTTTCGAACAAGATGATAAGTCCT
66 TTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCT
* * ** ** ** *
530746 T-TGAGCCATCCATTAGACCTTCAGACT-GGATGTTTTCACATGTCTTTTGAAAAATGAGAAAAG
131 TCAG-GCCATCCATAAGACCTTC-GGGTAGGATGTTTT-ACATGTGATTCAAAAAATGAGAAATG
* * * *
530809 TTTCTCATTTAAATCTGAAAATTAAAAGTTTTGAAAAGTA
193 TTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTA
* * * * * *
530849 AGAAAGGTTTTTTACCTAGTAAACTATTTCCAAAATTGCTAACTCCTTCGGGTCAT-TGATAATT
1 AGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAG-TAAGT
* * ** * * *
530913 ATGTCGAGCATGATGAGTAAATCCTTCGGGTCATCTATAAGTCTTTCGATCAAGATG
65 CTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATG
530970 GAAAGTCTTT
Statistics
Matches: 670, Mismatches: 127, Indels: 39
0.80 0.15 0.05
Matches are distributed among these distances:
229 1 0.00
230 8 0.01
231 192 0.29
232 302 0.45
233 159 0.24
234 8 0.01
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (232 bp):
AGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTC
TTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCT
TCAGGCCATCCATAAGACCTTCGGGTAGGATGTTTTACATGTGATTCAAAAAATGAGAAATGTTT
CTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTA
Found at i:530568 original size:648 final size:648
Alignment explanation
Indices: 529273--530580 Score: 1550
Period size: 648 Copynumber: 2.0 Consensus size: 648
529263 TGGAAAAGTA
* * ** * *
529273 AGAAAGGATTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTTGGGCCATCAGTAAGTC
1 AGAAAGGTTTCTTACATAGTAAACTATTTCCAAAATTGGTAAAACCTTCGGGCCATCAGTAAGTC
* * * *
529338 TTTCAAGCATGATACTTAATTCCTTCGGGTCATCTGTAAGCGTTTCGAGCAATATGATAAGTCCT
66 TTTCAAGCATGATACTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATAATAAGTCCT
* * * * *
529403 CTGGGCCATCCATAAGACCTTCGGGTATGATGTTTTCACATTATTTCAAAAGATGAGGAAAGTTT
131 CTAGGCCATCCATAACACCTTCGGGTAGGATGTTTTCACATGATTTCAAAAAATGAGGAAAGTTT
*
529468 CTCATTTAAAAATGAATTTTAAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATT
196 CTCATTTAAAAATGAAATTTAAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATT
* * *
529533 TCCAAAATTGGTAAGTCTTTCGGGCCATCAGTAAGTCCTTCGAGCATGATACTTATATCCTTCGG
261 TCAAAAATTGGTAAGTCTTTCGGGCCATCAATAAGACCTTCGAGCATGATACTTATATCCTTCGG
* * * *
529598 GTCATCTATAAGCATTTCGAGCAAGATGATAAGTCCTTCGGGAAATCCATAAGACTTTCGGGTGT
326 GTCATCTATAAGCATTTCGAGCAAGATGATAAGACCTTCAGGAAATCAAAAAGACTTTCGGGTGT
* * ** * *
529663 GATGTTTTCACGTTATTTCAAAAGATTACGAAATTTTCTCATTAAAAACTGTAATTTAAAATTTT
391 GATATTTTCACATTAGCTCAAAAGATGACGAAATTTTCTCATTAAAAACTGAAATTTAAAATTTT
* * * * *
529728 TGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTCGAAAATTGGTAAGTCTTTTGTGCCAT
456 TGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTCGAAAATTGGTAAGCCCTTCGGGCAAT
* * **
529793 CACTAGATCTTTCGAACATAATGCTTAAATCCTTCAGGTTTTTTAAGCCTTTTGAGAAAGAGGAT
521 CACTAGATCTTTCGAACATAATGCTTAAATCATTCAGGTTATGCAAGCCTTTTGAGAAAGAGGAT
* * *
529858 AAGTCATTTGGACCATCTATAAGACCTTCGGGTTGGATGTTTTAACATGTCTCTCGAAAAATG
586 AAGTCATTTGGACCATCTATAAGACCTTCGGGTAGGATGTTTTAACATGTATCTCAAAAAATG
* * *
529921 AGAAAGGTTTCTTACATAGTAAACTATTTCCAAAATTGGTAAAACCTTCGGGTCATTAGTTAGTC
1 AGAAAGGTTTCTTACATAGTAAACTATTTCCAAAATTGGTAAAACCTTCGGGCCATCAGTAAGTC
* * * * * *
529986 TTTCGAGCATGATGCTTAAATCCTTTGGGTCTTGTGTAAGCCTTTCGAGCAAGATAATACGTCCT
66 TTTCAAGCATGATACTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATAATAAGTCCT
* * **
530051 -TCAGGCCATCCATCACACCTTCGGGTAGGTTGTTTTCATGTGATTTCAAAAAATGA-GAAATGT
131 CT-AGGCCATCCATAACACCTTCGGGTAGGATGTTTTCACATGATTTCAAAAAATGAGGAAA-GT
* * ** * *
530114 TTCTCATTTGAATATGAAATTTGGAATTTTTGAAAAGTATGAAAGGTTTCTTACCTAGTAAACTA
194 TTCTCATTTAAAAATGAAATTTAAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATA
* **
530179 TTTCAAAAATTGGTAAGTCCTTT-GGGCCATCAATAAGACTTTCGAGCATGAT-CTTA-ATTTTT
259 TTTCAAAAATTGGTAAGT-CTTTCGGGCCATCAATAAGACCTTCGAGCATGATACTTATA-TCCT
* * * ** *
530241 TTGGGTCATCTGTAAGTC-TTTCGAGTAAGATGATAAGACCTTCAGGCCATCAAAAAGTCCTTT-
322 TCGGGTCATCTATAAG-CATTTCGAGCAAGATGATAAGACCTTCAGGAAATCAAAAAG-ACTTTC
* * *
530304 GGGTAG-GATATTTTCACATGTCGCTCGAAAA-ATGAC-AAATGTTTCTCATTTAAATCTGAAAT
385 GGGT-GTGATATTTTCACAT-TAGCTC-AAAAGATGACGAAAT-TTTCTCATTAAAAACTGAAAT
* * * *
530366 TTGAAATTTTTGTAAAGTAAGAAAGG-TTCTTACCTAGTAAACTATTTCTAAAATTGGTAAGCCC
446 TTAAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTCGAAAATTGGTAAGCCC
* * * * * * *
530430 TTCGGGCAATTAGTA-AGCTTTTCGAGCATGATGTTTAAATCATTCATGTCATATGCAAG-CTTT
511 TTCGGGCAATCACTAGATC-TTTCGAACATAATGCTTAAATCATTCAGGT--TATGCAAGCCTTT
** * * *
530493 TCG-GGCAGAATGATAAGTCATTTGGGCCATCTATAAGACCTTCGGGTAGGAT-TTTT-TCATGT
573 T-GAGAAAG-AGGATAAGTCATTTGGACCATCTATAAGACCTTCGGGTAGGATGTTTTAACATGT
*
530555 GATTTCAAAAAATG
636 -ATCTCAAAAAATG
*
530569 AGAAAGATTTCT
1 AGAAAGGTTTCT
530581 CATTTAAATA
Statistics
Matches: 554, Mismatches: 90, Indels: 32
0.82 0.13 0.05
Matches are distributed among these distances:
646 3 0.01
647 150 0.27
648 347 0.63
649 54 0.10
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (648 bp):
AGAAAGGTTTCTTACATAGTAAACTATTTCCAAAATTGGTAAAACCTTCGGGCCATCAGTAAGTC
TTTCAAGCATGATACTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATAATAAGTCCT
CTAGGCCATCCATAACACCTTCGGGTAGGATGTTTTCACATGATTTCAAAAAATGAGGAAAGTTT
CTCATTTAAAAATGAAATTTAAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATT
TCAAAAATTGGTAAGTCTTTCGGGCCATCAATAAGACCTTCGAGCATGATACTTATATCCTTCGG
GTCATCTATAAGCATTTCGAGCAAGATGATAAGACCTTCAGGAAATCAAAAAGACTTTCGGGTGT
GATATTTTCACATTAGCTCAAAAGATGACGAAATTTTCTCATTAAAAACTGAAATTTAAAATTTT
TGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTCGAAAATTGGTAAGCCCTTCGGGCAAT
CACTAGATCTTTCGAACATAATGCTTAAATCATTCAGGTTATGCAAGCCTTTTGAGAAAGAGGAT
AAGTCATTTGGACCATCTATAAGACCTTCGGGTAGGATGTTTTAACATGTATCTCAAAAAATG
Found at i:530975 original size:21 final size:21
Alignment explanation
Indices: 530951--530990 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
530941 GGTCATCTAT
*
530951 AAGTCTTTCGATCAAGATGGA
1 AAGTCTTTCGAGCAAGATGGA
*
530972 AAGTCTTTTGAGCAAGATG
1 AAGTCTTTCGAGCAAGATG
530991 TTTTCACATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (21 bp):
AAGTCTTTCGAGCAAGATGGA
Found at i:532196 original size:42 final size:41
Alignment explanation
Indices: 532149--532245 Score: 95
Period size: 42 Copynumber: 2.3 Consensus size: 41
532139 AATTGGTAAG
* * *
532149 TCCTTCGGGCCATCAGTAAGTATTTCAAGCATCATGCTTAAA
1 TCCTTCGGGCCATCAGTAAGCATTTCAAGCAACATG-ATAAA
* * * * * * *
532191 TCCTTCAGGTCATCTGTAAGCCTTTCAGGCAAGATGATAAG
1 TCCTTCGGGCCATCAGTAAGCATTTCAAGCAACATGATAAA
532232 TCCTTCGGGCCATC
1 TCCTTCGGGCCATC
532246 CATAAGACCT
Statistics
Matches: 43, Mismatches: 12, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
41 15 0.35
42 28 0.65
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (41 bp):
TCCTTCGGGCCATCAGTAAGCATTTCAAGCAACATGATAAA
Found at i:532932 original size:463 final size:465
Alignment explanation
Indices: 532052--541742 Score: 3820
Period size: 463 Copynumber: 20.9 Consensus size: 465
532042 TTAAATATTA
* * * * *
532052 AAAAATGAGAAAGGTTTCTCATTTATACATGAAATTTGAAATTTCTGAAAAGTAAGAAACGTTTC
1 AAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTC
* * * *
532117 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTATTTCAAGCATC
66 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCATG
* *
532182 ATGCTTAAATCCTTCAGGTCATCTGTAAGCCTTTCAGGCAAGATGATAAGTCCTTCGGGCCATCC
131 ATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGCCATCC
* * * * * * *
532247 ATAAGACCTTTGGGCAGGATACTTTT-ACATGA-CTCTAAAAAATGAGAAAGGTTTCTTATTT-A
196 ATAAGACCTTCGGGTAGGAT-GTTTTCACGTGATTTC-AAAAAATGAGAAATGTTTCTCATTTAA
*
532309 A-AT---A--TGAAA--TTTGAAAAGTAAGAAAGGTTTCTTACCTCGTAAACTATTTCCAAAATT
259 ATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATT
** * * * * * *
532366 GGTAAGTCCTTCAGGCCATCAGTAAGTATTTCGATCATGATGCTTAAATTTTTCAGGTCATTTGT
324 GGTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGTCATCTAT
** * * *
532431 AAGCCTTTCGAGCAAGATGATAAGTCCTTCAAGCCATCCATAAGACCTTTGGGCAAGATGTTTTC
389 AAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTC
*
532496 ACACGTCTTTAG
454 ACATGTCTTTAG
* * * * * *
532508 AAAAATGAGAAAGGTTTCCCATTTAAATATGATATTTGTAATTTTTGAAAAGTAAGATATGTTTC
1 AAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTC
* * * *
532573 TTACCTAGTAAACTATTTCCAAAATTGGTAAGCCCTTCCGGCCATTAGTAAATCTTTTGAGCATG
66 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCATG
* * * * * **
532638 ATACCTAAATCCTTCGGGTCATCTGTAAGCATTTCAAGCAAGATGATAGGTCATTC-ATCCATCC
131 ATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGCCATCC
* * *
532702 TTAAGA-CTTCGGGTAGAATATTTTCACGTGATTTCAAAAAATGAGAAATGTTTCTCATTTAAAT
196 ATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGAGAAATGTTTCTCATTTAAAT
* * *
532766 ATGAAATTTAAAAATTTTGAAAAGTAAGAAAGGTTTCTTATCTAGTAAACTATTTCCAAAATTGG
261 ATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGG
* * * **
532831 TAAGTCCTTTGGGCCATCAGTAAATCTTTCGAGCATGACGCTTAAATTTTTTTGGTCATCTATAA
326 TAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGTCATCTATAA
* * * * * * *
532896 GCCTTTTGAGCAAGACGATAAGACCTTCGGGCCATCCAAAAGACCTTCGGGCAAGATTTTTTCAC
391 GCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCAC
532961 ATGTCTCTT-G
456 ATGTCT-TTAG
* * * * *
532971 ATAAATGAG-AAAGATTTCTCATTTGAATCTGAAATTT-AAAATTTTG-TAAGCTAAGAAAGGTT
1 AAAAATGAGAAAAG-TTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAG-TAAGAAAGGTT
* * * * * *
533033 TCTTACCTAGTAAACTGTTTACAAAATTGGTAAGCCCTTCGGGCCATTAGTAATTCTTTCAAGAA
64 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCA
* * * * * * *
533098 CGATGTTTAAATCTTTCAGGTCATCTGTAAGCCTTTCGAA-CTAGGTGATAAGTTCTTCGGGCCA
129 TGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTC-AAGCAAGATGATAAGTCCTTCGGGCCA
* * *
533162 TCTATAAGACCTTCGGGTTGGATGTTTTCACGTGATTTCAAAAAATGTA-AAA-GATTTCTTATT
193 TCCATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATG-AGAAATG-TTTCTCATT
*** * *
533225 TAAATCCAAAATTTGAAATTTTTGAAAAGTCAGAAAGATTTCTTACCTAGTAAACTATTTCCAAA
256 TAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAA
* * ** * * * * *
533290 TTTTGTGGTGTCCTTAGGTCCATGAGTAAGTCTTTCGAGCTTGATGCTTAAATCCTTCGGGTCAT
321 ATTGGT-AAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGTCAT
* * * * * *
533355 CTATAAGCCTTTCGACCAA-TTGATAAGTCCTT-GAGCCATCAATAAGACCTTCAGGTATGATGT
385 CTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGT
*
533418 TTTCACATGAT-TTCA-
450 TTTCACATG-TCTTTAG
* * * * *
533433 AAAAATTAGAAAAGTTTCTCATTTAAATATGAAATTTGAATTTTTTGACAGGTAAGAATGGTTTC
1 AAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTC
* * ** * * *
533498 TTACCTAGTAAACTATTTCTAAAATTAGTAAGTCAGTCGGACCATCAATAAGTCTTTCGAGCATG
66 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCATG
* * *
533563 ATGCTTAAATCCTTCGTGTCATCTGTAAGCCTTTTTAA-CAAGATGATAAGTCTTTCGGGCCATC
131 ATGCTTAAATCCTTCGGGTCATCTGTAAGCC-TTTCAAGCAAGATGATAAGTCCTTCGGGCCATC
* * * * * * *
533627 CATAATACTTTCGAGTATGATGTTTTAAGGTGATTTCAAAAGATGAGGAAAT-TTTCTCATTTTA
195 CATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGA-GAAATGTTTCTCA-TTTA
533691 AACTA--AAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAA
258 AA-TATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAA
** * * *
533754 TTGGTAAGT-CTTTCAAGCAATCAGTAAGTCTTTCAAGCATGATACTT-AATTCCTTCGGGTCAT
322 TTGGTAAGTCCTTT-GGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATT-CTTCGGGTCAT
* * * * * *
533817 CTTTAAGCGTTTCGAGCAAGATGAGAAGTCCTCCTGGCCATCCATAAGACCTTCGGGTATGATGT
385 CTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGT
* *
533882 TTTCACGT-TATTTCA-
450 TTTCACATGTCTTT-AG
* * * ** * * *
533897 AAAGATGAGGAAATTTTCTGTTTTAAA-ATTGAATTTTTAAATTTTTGAAAAGTAGGAAAGGTTT
1 AAAAATGAGAAAAGTTTCTCATTTAAATA-TGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTT
* * * * * *
533961 CTTACGTAGTAAACTATTTCCAAAATTTGTAAGTCTTTCGGGCCATCAATAAGTCCTTCGAGCAT
65 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCAT
* * ** *
534026 GATACTTAAATCCTTCGGGTCATCTGTAAGCATTTTGAGCAAGATGATAAGTCCTTCGGGCAATC
130 GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGCCATC
** * * *
534091 CATAAGATTTTCGGGT-GTGATGTTTTCATGTTATTTCAAAAGATGAGGAAAT-TTTCTCA-TTA
195 CATAAGACCTTCGGGTAG-GATGTTTTCACGTGATTTCAAAAAATGA-GAAATGTTTCTCATTTA
* * * * *
534153 AAAATTGTAATTTAAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTCAAAAA
258 AATA-TGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAA
* * * * * *
534218 TTTGTAAGT-CTTTCGTGCCATCACT-AGATCTTTCGAACAT-AGTGCTTAAATCCTTCAGGT--
322 TTGGTAAGTCCTTT-GGGCCATCAGTAAG-TCTTTCGAGCATGA-TGCTTAAATTCTTCGGGTCA
* * * * * * * * *
534278 TTTTTAAGCCTTTCGAGAAAGAGGATAAGTCATTTGGACCATCTATAAGACCTTCGGGTTGGATG
384 TCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATG
* * *
534343 TTTTAACATGTCTCTCG
449 TTTTCACATGTCTTTAG
* *
534360 AAAAATGAGAAAAGTTTCTCATTTTAATATGAAATTTGAAAATTTTGAAAAGTAAGAAAGGTTTC
1 AAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTC
* * ** * ** *
534425 TTACATAGTAAACTATTTCTAAAATTGGTAAAACCATCATGCCATTAGTTAGTCTTTCGAGCATG
66 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCATG
* * * * * *
534490 ATGCTTAAATCCTTCGGGTCTTGTGTAAGCCTTTCGAGCAAGATAATACGTCCTTCAGGCCATCC
131 ATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGCCATCC
* * * * *
534555 ATCACACCTTCGGGTAGGTTGTTTTCACGTGATTTCAAAAAATGAGAAATGTGTCTCATTTGAAT
196 ATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGAGAAATGTTTCTCATTTAAAT
* * **
534620 ATGAAATTTGGAATTTTTGAAAAGTATGAAAGGTTTCTTACCTAGTAAACTATTTTAAAAATTGG
261 ATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGG
* * * * * * * *
534685 AAAGTCCATTGGGCCATGAATAAGACTTTCGAGCATGAT-CTTAATTTTTTTGGGTCATCTATAA
326 TAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGTCATCTATAA
* * * * * * * *
534749 GTCTTTCGAGTAAGATGATAAGACCTTCAGGCCATCAAAAAGTCCTTTGGGTAGGATGTTTTCAC
391 GCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCAC
* *
534814 ATATGGC-TCA-
456 --ATGTCTTTAG
* * * * *
534824 AAAAATGACAAATGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGTAGAGTAAGAAAGG-TTC
1 AAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTC
* * *
534888 TTACATAGTAAACTATTTCCAAAATTGGTAAGCCCTTCGGGCAATTAGTAAG-CTTTTCGAGCAT
66 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATTAGTAAGTC-TTTCGAGCAT
* ** * * * * *
534952 GATGTTTAAATCCTTCATGTCATATGCAAGCTTTTCGAGCAAGATGATAAGTCATTCGGGCCATC
130 GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGCCATC
* *
535017 TATAAGACCTTCGGGTAGGATGTTTTCATGTGATTTCAAAAAATGAGAAA-GATTTCTCATTTAA
195 CATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGAGAAATG-TTTCTCATTTAA
* * * * *
535081 ATAT-AGAATTTGAAAATTTTGTAAAGTCAGTAAGGTTTCTTACCTAGTAAACTATTTCCAAATT
259 ATATGA-AATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAAT
* ** * * * * *
535145 TGGTAGGTTATTCGGGCCATCAGTAAGT-TTTCGAGCATGATGTTTAAATCCTTCGGGCCATCTG
323 TGGTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGTCATCTA
* * * * * * **
535209 TAAGCCTTTCAAACAAGATGATAAGTCCTTTGAGCCATCCATAAGAACTTCAGACAGGATGTTTT
388 TAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTT
*
535274 CACATGTCTTTTG
453 CACATGTCTTTAG
* * * * *
535287 AAAAATGAGAAAAGTTTCTCATTTAAATTTGAAAATTAAAAGTTTTGAAAAGTAAGAAA-GTTTT
1 AAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTC
* * * * *
535351 TTACCTAGTAAACTATTTCCAAAATTGCTAAGTCCTTCGGGCCA-TCGATAATTATGTCGAGCAT
66 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATTAG-TAAGTCTTTCGAGCAT
** * ** * * * *
535415 GATGAGTAAATCCTTCGGGTCATCTATAAATCTTTCGATCAAGATGATAAGTCCTT--TG--A-G
130 GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGCCATC
* * * *** ** *** * *
535475 C--AAGACGTT---TTCA-CATGTTTTCGA-AAAATTAGAAAACAATTTCCAAA-ATTTATCATT
195 CATAAGACCTTCGGGT-AGGATGTTTTC-ACGTGATTTCAAAA-AA-TGAGAAATGTTTCTCATT
* * * * * * * ***
535532 AAAATCTTTTTTGAAAAATT-AAATTTTTGAGAAAATAACCAATTCAGATTCCCATGTTTGGTGG
256 TAAA-----TATG-AAATTTGAAATTTTTGA-AAAGTAA-GAA---AGGTT----TCTTACCT--
* * * ** ** * * *
535596 CGGCTAGACAAGCTCCGATAAGAGAAGGTAA-T-CTTCCCTGAAGAACACTGGAATGAATCAACA
304 -AG-TAAACTATTTCC-A-AA-A-TTGGTAAGTCCTT---TG--G-GC-C----ATCAGT--A-A
* * ** * * * **** * * * * * *
535659 CTCTTTTGTTA-TTTTAT-TTCTAAAATAAAAGAAAGG--A--GAAAAACATTTTC-A--AACAA
349 GTCTTTCG--AGCATGATGCT-TAAATTCTTCG---GGTCATCTATAAGC-CTTTCGAGCAAGAT
** * * *** ** ** * * * * **
535715 GAT-AGTCCCAATTTTGG-AAGGTCCTTGAAG-CGAGCAAG-ACCCAT-TTTGCCCCTAT-TAGA
407 GATAAGT-CC--TTCGGGCCA--TCCAT-AAGACCTTCGGGTA-GGATGTTTTCACATGTCTTTA
535774 G
465 G
** * ** * * *
535775 AAAAA-GA-ATGAGTGATGC-CA---AGAATGATGAAGCATTCCATATTCTTG-AAAG-AA-AAT
1 AAAAATGAGAAAAGT--TTCTCATTTA-AAT-ATGAA--ATTTGAAATTTTTGAAAAGTAAGAAA
* * *** ** * *** ** * * ** *
535831 GCTATGAGAAATCAG-AAA-GATTGGAGGATAGAACTT-GTAACACTTTCTCGTGACGTTGTCGG
60 GGTTTCTTACCT-AGTAAACTATT--TCCA-A-AA-TTGGTAAGTC-CT-TCG-GGCCAT-T-AG
* ** * ** ***** * * *** * * *
535893 TAA-CCCATCGAGAAAGCGATGATCGCCCTATTTGAAAGGGGCACATATCCCAGCGTAT--AGAA
114 TAAGTCTTTC--G--AGC-ATGAT-G-CTTAAATCCTTCGGG-TCATCTGTAAGCCTTTCAAG-C
* * **** * * * *** *
535955 AAAATG-CAAGAGGAT--GACCAAT-CA-AGGA---T---G-A--AT-TTTGGCACCAAAATTTG
170 AAGATGATAAGTCCTTCGGGCC-ATCCATAAGACCTTCGGGTAGGATGTTT-TCA-CGTGATTTC
* ** * * ** * * * ** ** * * * *
536005 GATGAGTCATGAAA-GTACCCACATTGGAGGATGACCAAGAACTCATATCATGTTG-AGA-TAA-
232 AAAAAATGA-GAAATGT-TTCTCATT-TA-AAT-ATGAA-ATTTGAAAT--TTTTGAAAAGTAAG
* ** * * * * * * **
536066 CAAGG-TTCAGATCGA-AAAGAC-A-TT--AAGATTGAGT--CTCGCAACTTGGAG-TGTCAGTG
289 AAAGGTTTCTTACCTAGTAA-ACTATTTCCAAAATTG-GTAAGTC-C--TTTGG-GCCATCAGT-
* * *** * * * *
536122 GAAGACCATGAATTTGAGCA-GA-GCTT--A--C--CAGGAAAAAC-A-AA-CC-ATCCA--AAA
347 -AAG-TC-T---TTCGAGCATGATGCTTAAATTCTTC-GGGTCATCTATAAGCCTTTCGAGCAAG
* * * * * * * ** * * * * * *
536173 ATCAATTAA-T--TGTAGAG--TTCTAAAAAAATAGTTC-TGAAAGA-GTAATTGAGCCAAATGA
405 AT-GA-TAAGTCCT-TCGGGCCATC-CATAAGA-CCTTCGGGTAGGATGT--TT---TCACATGT
*
536231 C-ATAG
460 CTTTAG
* * ** * ** ** *
536236 ---AATG-GCATCAAG-ATCAT-ATTACTAACCA--CAATAAG-AATTTGAG-AGA-TAA-AACA
1 AAAAATGAG-A-AAAGTTTC-TCATT--TAAATATGAAATTTGAAATTTTTGAAAAGTAAGAA-A
* **** *** * * * *** *
536289 --TTTCCT--CT-G-AAA-TAAAGACAGAAA--ACAAAGACC-ACAAGATGATTGAGCTGA-TC-
60 GGTTTCTTACCTAGTAAACTATTTCCA-AAATTGGTAAGTCCTTC-GGGCCATT-AG-TAAGTCT
* * * ** ** ** * * *
536342 TTCAGAAGAATGCAAGCTTGAAATCATAAGTTTC-TACACTAA---TATCTAAGTAAACACTAGA
121 TTC-G-AGCATG-ATGCTT-AAATCCTTCGGGTCAT-CTGTAAGCCTTTC-AAG-CAAGA-T-GA
* * * * * * * * *
536403 GAAG-----AGTG--ATCACAGAAAGA----AGGCCTA--A--TTCTC-CAT--TTTAAAGACAA
177 TAAGTCCTTCGGGCCATC-CA-TAAGACCTTCGG-GTAGGATGTTTTCACGTGATTTCAA-A-AA
* ** *** * ** * *
536450 AGGA-AAATTGAATCAGT-ATTTATGCATG-CATGAGAACATCATTTGAATAAG--AGAAA--AT
237 ATGAGAAA-TGTTTC--TCATTTAAATATGAAATTTGAA-AT-TTTTGAA-AAGTAAGAAAGGTT
* ** * ** ** * *
536508 CCATTAAATTGTATTCGTATTTCACACATAA-ACGTATGGT--TTT----TAT-AG--A-TC-TT
296 TC-TTACCTAGTAAAC-TATTTC-CA-A-AATTGGTA-AGTCCTTTGGGCCATCAGTAAGTCTTT
* * * * ** * * * * *** *
536561 CTAAGGA-AAAG-AAAAGATTCAT--GCT-AT-TAAAATCCCAACAAGTAG-AAGAT-ATAATTA
355 C-GAGCATGATGCTTAA-ATTCTTCGGGTCATCTATAAGCCTTTC--G-AGCAAGATGATAAGT-
* * ** * * * ** * *** * *
536618 AAACCTCAAATACAGGG-AATCATATTTAAGGAGGTAGAACCTGAAGAACAAGGTGGACCCA-AT
414 ---CCT----T-C-GGGCCATC-CA--TAA-GACCT----TC-G-GGTAGGATGTTTTCACATGT
**
536681 CCATAG
460 CTTTAG
* * ** ** * ** * * *
536687 AGGAAGTATTACTTTAAAGTGGGGCAT-ATTGCCTGACCATTAAATCGTTTTGTAAA-TATTAAA
1 A--AA-AATGA--GAAAAGT--TTC-TCATT---TAAATATGAAA----TTTG-AAATTTTTGAA
* * * ** * * * * **
536750 AAATGAGAAAGGTTTCTCATTTAAACATGAAATTTGAAATTTCTGAAAAGTAAGAAAAGT--TTC
50 AAGTAAGAAAGGTTTCTTACCT--A-GT-AAA-CT---ATTTC-CAAAA-T-TGGTAAGTCCTTC
*** * * * ** * * * * **
536813 TTACC--TAGTAAACTATTTCAAAAAT--TG-GTAAGTCCTTCGGGCCATCAGTAAGTATTTCAA
104 GGGCCATTAGT-AAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAA
** ** * * * ** ** * **
536873 GCATCATTTTTAAATCCTTCAGGTCATCTGTAAG-CCTTTCAGGCAAGATGATAAGTCCTTCGGG
168 GCAAGA-TGATAAGTCCTTCGGGCCATCCATAAGACC-TTC-GGGTAG--GAT--GT-TTTCACG
** * ** * * *
536937 CCA-TCCATAAGACCTTTGGGCAGGATAGTTT-TACATGACTCTAAAAAATGAGAAATGTTTCTT
225 TGATTTCA-AA-A--AATGAG-A-AAT-GTTTCT-CAT---T-T-AAATAT--GAAA-------T
* * *
537000 ATTTAAATATGAAATTTGAAAAGTAAGGAAAGGTTTCTTACCTCGTAAACTATTTCCAAAATTAG
268 -TTGAAAT-T----TTTGAAAAGTAA-GAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGG
* * * * * * * *
537065 CAAGTCCTTCGGGCCATCAGTAAGTATTTTGATCATGATGCTTAAATT-TTCCAGGTCATTTGTA
326 TAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTT-CGGGTCATCTATA
** * * **
537129 AGCCTTTCGAGCAAGATGATAAGTCCTTCAAGCCATCCATAAGACCTTTGGGCAATATGTTTTCA
390 AGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCA
* *
537194 CACGTCTCTAG
455 CATGTCTTTAG
* * * * * * *
537205 AAAAATGAGAAAGGTTTCCCATTTAAATATGATATTTGTAATTTTTGAAAAGTATGATATGTTTC
1 AAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTC
* * * * *
537270 TTATCTAGTAAACTATTTCCAAAATTGGTAAGCCCTTCCGGCCATTAGTAAATCTTTTGAGCATG
66 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCATG
* * ** * * *
537335 ATACTTAAATCCTTCGGGTCATCTGTAAGCATTTTGAGCAAGATGATAGGTCATTCGTGCCATCC
131 ATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGCCATCC
* * * * *
537400 ATAAGA-CTTCGGGTAGAATATTTTCACGTGATTTCAAAAAACGAGGAATGTTTCTTATTTAAAT
196 ATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGAGAAATGTTTCTCATTTAAAT
*
537464 ATGAAATTT-AAAATTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGG
261 ATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGG
* * * * *
537528 TAAGTCCTTTGGGCCATCTGTAAGTCTTTTGAGCATGATGCTTAAATTTTTTGGGTCAT-TGTAA
326 TAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGTCATCTATAA
* * * * * *
537592 GCCTTTTGAGTAAGATGATAAGACCTTCGGGGCCATCCAAAAGACCTTCTGGTAGGATGTTTTAA
391 GCCTTTCGAGCAAGATGATAAGTCCTTC-GGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCA
* *
537657 CATGTCTCTCG
455 CATGTCTTTAG
* * * *
537668 AAAAATGAGAAAGGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGTAAAGCAAGAAAGGTTTC
1 AAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTC
* * * * *
537733 TTACCTAGTAAACCATTTCAAAAATTGGTAAG-CCATTTGGGCCATTAGTAAGTCTTTCGATCAC
66 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC-TTCGGGCCATTAGTAAGTCTTTCGAGCAT
* * ** *
537797 GATGTTTAAATCTGCTT--GGTCATCT-TAAGTCTTT-TGGCAAAATGATAAGTCCTTCGGGCC-
130 GATGCTTAAATC--CTTCGGGTCATCTGTAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGCCA
* *
537857 TCTATAAGACCTT-GAGTAGGATGTTTTCACGTGA-TTCAAAAAAT-AG-AA-GATTTCTCATTT
193 TCCATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGAGAAATG-TTTCTCATTT
* * * * * * *
537917 AAATCTAAAATTTGAAATTTTTGTAAAGTCAGATAGATTT-TTA-CTAGTAAACTATTTCCAAAT
257 AAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAA
* * * * * * ** * *
537980 TTGGTAAGTCCTTCGGGCCATCAGTAAGCCTTTCGACCA-GATG-ATAAGTCCTTCTAGCCATCA
322 TTGGTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGTCATCT
* * ** * ** * ** * * **
538043 ATAAGACCTTTC-AGGTAGGATG-T-TTTCACAT-GATTTCAATAAAAAGAAGAAAAGCTTCTCT
387 ATAAG-CCTTTCGA-GCAAGATGATAAGTC-CTTCG--GGCCAT--CCATAAG---ACCTTC-GG
* * * * *
538104 TTA-AATCTGAAATTTGA-AT-T-TTTTG
441 GTAGGA--TG--TTTTCACATGTCTTTAG
* * * ** * * * ** *
538129 AAAAGTAAG-AAAGGTT-TC--TTACCTA-GTAAA-CT---ATTTCT-AAAA-T-TGGTATGTCA
1 AAAAATGAGAAAAGTTTCTCATTTAAATATG-AAATTTGAAATTTTTGAAAAGTAAGAAAGGT--
** * * * * * * * * * * ** *
538182 TTCGAAACATCAAT-AAGTCTTTCGAGTATAA-TGCTTAAATCCTTTGTGTCATCCGTAAGCCTT
63 TTC-TTACCT-AGTAAACTATTTCCA--A-AATTG-GTAAGTCCTTCGGGCCATTAGTAAGTCTT
* ** * * * ** * *
538245 TTGAG-ATAGAT-AATAAGTCCTTTGGGCCATCCATAAGACC-TT--AG--GGTATGAT--GT-T
122 TCGAGCAT-GATGCTTAAATCCTTCGGGTCATCTGTAAG-CCTTTCAAGCAAG-ATGATAAGTCC
** ** * * * * *
538300 TTCACGTTATTTCAAAAGA---T---G-AGGAAAG-TTT--C-TCATTT--AAAACT-A-AAA--
184 TTCGGGCCA-TCCATAAGACCTTCGGGTAGG-ATGTTTTCACGTGATTTCAAAAAATGAGAAATG
* * * *
538348 -TT-TGA---AAGT-T---TT-----A----T--AAAGTAAGAAATGTTTCTTACCTAGTAAACT
247 TTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACT
* * * * *
538393 ATTTCCAAAATTGGTAGGT-CTTTCGGGCCATCGGTAAGTCTTTCGAGCATGATACTAAAATCCT
312 ATTTCCAAAATTGGTAAGTCCTTT-GGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCT
* * * *
538457 TCGGGTCATCTGTAAG-CTTTTGAAGCAAGATGATAAGTCCTTCAGGCAATCCATAAGACCTTCG
376 TCGGGTCATCTATAAGCCTTTCG-AGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCG
* *
538521 GGTATGATGTTTTCACGTGAT-TTTA-
440 GGTAGGATGTTTTCACATG-TCTTTAG
* * *
538546 AAAGATGAGGAAAGTTTCTCATTTAAA-ACT-ATAATTTTAAATTTTTGAAAAGTAAGAAAGGTT
1 AAAAATGAGAAAAGTTTCTCATTTAAATA-TGA-AATTTGAAATTTTTGAAAAGTAAGAAAGGTT
* * * * *
538609 TCTTACCTAGTAAAATATTTCCAAAATTGGTAAGT-CTCTCGGACCATGACTAAGTCTTTCGAAC
64 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCT-TCGGGCCATTAGTAAGTCTTTCGAGC
* * * * ** * * * * *
538673 ATAATGCTTAAATCTTTTGGGT--T-TTTAAGCCTTTCGTGAAAGAGGATAAGTCATTCGAGACA
128 ATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGCCA
* * *
538735 TCTATAAGTCCTTCGGGTAGGATGTTTTCACACGT-CTCTT-AAAAAATGAGAAA-GATTTCTCA
193 TCCATAAGACCTTCGGGTAGGATGTTTT--CACGTGAT-TTCAAAAAATGAGAAATG-TTTCTCA
* * **
538797 TTTTAAA-ATGAAATTTGAAAATTTTGATAAGTAAGAAAGGTTTCTTACAAAGTAAACTATTTTC
254 -TTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTA-TTTC
** * * * * * * *
538861 TGAAATCGATAAGCCCTTCGGGCCATTAGTAAGTCTTTCGAGCATGGTGCTTAAATCCTTCGGGT
317 CAAAATTGGTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGT
* * ** * ** * *
538926 TATC-AGTATGCCTTTATAGCAAGATGATAAGACCTTCTAGCCATCCAAAAGACCTTCGGGCAGG
382 CATCTA-TAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGG
*
538990 ATGTTTTCACATGTCTCTCA-
446 ATGTTTTCACATGTCT-TTAG
* * * * *
539010 AAAACTGAGAAAA-CTTCTCATTTAAATATGAAATTTGAAATTTTTAAAAAGTAAGATATGTTTC
1 AAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTC
* *
539074 TTACCTAGTAAACTATTTCCAAAATTGGTAAG-CCTTTCAGGCCATTAGTAAGTCTTTTGAGCAT
66 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC-TTCGGGCCATTAGTAAGTCTTTCGAGCAT
* * * *
539138 GATGCTTAAATCCTTCGGGTCATTTGTAAGCCTTTCGAGCAAGATGATAAGTCATTCAGGCCATC
130 GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGCCATC
** * * ** *
539203 CATAAGA-CTTCAAGTAGGATATTTTCACATGATTTCAAAATGTGAGAAATTTTTCT-ATTTTAA
195 CATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGAGAAATGTTTCTCA-TTTAA
* *
539266 ATCTGAAATTTGAAATTTTTGAAAAGTAAAAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATT
259 ATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATT
* * * *
539331 GGTAAGTCCTTTTGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTTTTTGGGTCATCTGT
324 GGTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGTCATCTAT
** * * * *
539396 AAGCCCTTT-GTTCAAGATGATAAGACATTCGGGCCATCCA-AATGACCTTCGGGCATGATGTTT
389 AAG-CCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAA-GACCTTCGGGTAGGATGTTT
* *
539459 TCACATATCTCTCA-
452 TCACATGTCT-TTAG
* * * * *
539473 AAAAATGAGAAAGGTTTCTCATTTAAATCTGAAATTTGAATTTTTTGTAAACTAAGAAAGGTTTC
1 AAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTC
* * * * * **
539538 TTACCTAGTAAACTGTTTCCAAAATTGGTAAGCCCTTCAGGCCATTAGTAAGTCTTTCAAGAACA
66 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCATG
* * * * *
539603 ATGTTTAAATCTTTCAGGTCATCTGTAAGCCTTTCGAA-CTAGATGATAAGTCCTTCGGACCATC
131 ATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTC-AAGCAAGATGATAAGTCCTTCGGGCCATC
* * * *
539667 TATAAGACCTTTGGGTACGATGTTTTCACGTGATTTCAAAACAATGAGAAA-GATTTCTTATTTA
195 CATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAA-AATGAGAAATG-TTTCTCATTTA
* * * * * *
539731 AATCTAAAATTTGAAATTTTTGAAAAGTCATAAAGATTTCTTACCTAGTAAACTATTTCCAAATT
258 AATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAAT
* * * *
539796 TGGTAAGT-CTTCGGGCCATCAGTAAGTCTTTCGAACATGATGCTTAAATCCTTCGGGTCATCTG
323 TGGTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGTCATCTA
* * * * *
539860 TAAGCCTTTCTA-CAA-ATTGATAAGTCCTTTGAGCCATCAATAAGACCTTCGGGTATGATGTTT
388 TAAGCCTTTCGAGCAAGA-TGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTT
* *
539923 TCACATG-ATTT-C
452 TCACATGTCTTTAG
* *
539935 AAAATTGAGAAAAGTTTCTCATTTAAATATGAAATTTCAAA-TTTTGAAAAGTAAGAAAGGTTTC
1 AAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTC
* * * * * *
539999 TTACCTAGTAAAATATTTCTAAAATTGGGAAGTCATTCGGGCCATCAATAAGTCTTTCGAGCATG
66 TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCATG
* * * * ** * *
540064 ATGCTTATATCCTTCGTGTTATCTGTAATCCTTTTGAGCAGGATGATAAGTCCTTCGAGCCATCC
131 ATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGCCATCC
* *
540129 ATAAGACCTTCGGGTATGATGTTTTCACGTGATTTCAAAAGATGAGGAAAT-TTTCTCATTTAAA
196 ATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGA-GAAATGTTTCTCATTTAAA
540193 -ACTGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTA-CTAGTAAACTATTTCCAAAATT
260 TA-TGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATT
* * *
540256 GGCAAGT-CTTTCGGGCCATCAGTATGTCTTTCGAGCATGATACTTAAA-TCTTTCGGGTCATCT
324 GGTAAGTCCTTT-GGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTC-TTCGGGTCATCT
* * * * * *
540319 ATAAGCATTTCGAGCAAGATGATAAG-CTTTCGGGCAATCCATGAGACCATCGGGTAAGATGTTT
387 ATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTT
* *
540383 TCACGTGAT-TTCA-
452 TCACATG-TCTTTAG
* * ** * * *
540396 AAAGATAAGGTAAGTTTCTCATTTAAA-ATTATAATTTGAAATTTTTGAAAATTAAGAAAGTTTT
1 AAAAATGAGAAAAGTTTCTCATTTAAATATGA-AATTTGAAATTTTTGAAAAGTAAGAAAGGTTT
* * * * * * *
540460 CTTACCTAGCAAAATATTTCCAAAATTTGTAAGTCTTTCGGGCCATCACTAAGTCTTTCGAACAT
65 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCAT
* * ** * * * * * *
540525 AATTCTTAAAT-CTTCCAGT--TTTTTAAGCCTTTCGAGAAAGAGGATAAG-CCATTTGGGCCAT
130 GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGATGATAAGTCC-TTCGGGCCAT
* * * *
540586 CTATAAGACCTTCGGGTAGGATGGTTTT-ACATG-TCTCTCGAAAAATGAGAAAGGTTTCTCATT
194 CCATAAGACCTTCGGGTAGGAT-GTTTTCACGTGAT-T-TCAAAAAATGAGAAATGTTTCTCATT
* * *
540649 TTAATATGAAATTTGAAAATTTTGAAAAGTAAGAAAGGTTTC-TACATAGTAAACTATTTCCAAA
256 TAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAA
* * * * * *
540713 ATTGGTAAGCCCTTCGGGCCATTAATAAGTCTTTCGAGCATGATGGTTAAATCCTTCGGGTCATC
321 ATTGGTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGTCATC
* * * * * *
540778 TGTAAACTTTTCGAGCAAGATTATAAGTCTTTCGGGCCATCCATCAA-ACCTTCGGGTAAGATGT
386 TATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCAT-AAGACCTTCGGGTAGGATGT
*
540842 TTTCAC--GTAATTTCA-
450 TTTCACATGT-CTTT-AG
** * * * *
540857 AAAAATGAGAATGGTTTCTCATTTGAATATGAAATTTTGAAA-TTTTGAAAATTATGAAATGTTT
1 AAAAATGAGAAAAGTTTCTCATTTAAATATGAAA-TTTGAAATTTTTGAAAAGTAAGAAAGGTTT
* * * * * * * * *
540921 CTTACCTTGTAAACTATTTTCC-AAATTGCTACGTCCTTTGGGCCATCAATAAGACTTTTGAACA
65 CTTACCTAGTAAACTA-TTTCCAAAATTGGTAAGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCA
** ** * * * * * *
540985 TGATAATTAAATTTTTTGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGACCATCGAGCCAT
129 TGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGCCAT
* * *
541050 CCA-AATGACCTTCAGGCAGGATGTTTTCACTTG-TCTCTCAAAAAATGAGAAATGTTTCTCATT
194 CCATAA-GACCTTCGGGTAGGATGTTTTCACGTGAT-T-TCAAAAAATGAGAAATGTTTCTCATT
* *
541113 TAAATCTGAAATTTGAAATTTTTGTAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAA
256 TAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAA
* * * * * * * * ** *
541178 ATTTGTAAGCCCTTCGGGGCCATTAGTAAGTCTTTTGAGCATGGTGTTTAAATCCTTCAAGTAAT
321 ATTGGTAAGTCCTT-TGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGTCAT
* ** * *
541243 CTGTAAGTGTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTTGGGTAGGATGT
385 CTATAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGT
* *
541308 TTTCACTTGAT-TTCA-
450 TTTCACATG-TCTTTAG
* * * *
541323 AAAAATGAG-AAAGATTTCTCATTTAAATCTAAAATTTGAAAATTTTGAAAAGTCAGAAAGGTTT
1 AAAAATGAGAAAAG-TTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTT
* * *
541387 CTTACCTAGTAAACTATTTCCAAATTTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCAA
65 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCAT
* * * * * *
541452 GATGCTTAAATCCTTCAGGTCAT-TGTAAACCTTTCGAA-CAA-TTGATATGTCCTTTGTGCCAT
130 GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTC-AAGCAAGATGATAAGTCCTTCGGGCCAT
* * * ** * * *
541514 CAATAACACTTTCAAGTAGGATGTTTTCACATGACTTC-AAAAATGAGAAAAGTTTCTCATTTAA
194 CCATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGAGAAATGTTTCTCATTTAA
* * *
541578 ATAT-AAA-TTG-AATTTCTTG-AAA-T--GTAAGGTTTTTTACCTAGTAAACTATTTCTAAAAT
259 ATATGAAATTTGAAATTT-TTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAAT
* * * * * * * * *
541636 TGGTAAGTCATTCGTGCCATCAATAAGTCTTTTGAGCATGATGTTTAAATCCTTCGTGTCATCTG
323 TGGTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGTCATCTA
* * * *
541701 TAAGCATTTTGAGCTAGATGATAAGTCCTTCGGGCAATCCAT
388 TAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCAT
541743 TGAAATTTAA
Statistics
Matches: 6881, Mismatches: 1694, Indels: 1321
0.70 0.17 0.13
Matches are distributed among these distances:
415 4 0.00
416 1 0.00
417 8 0.00
418 12 0.00
419 10 0.00
420 8 0.00
421 20 0.00
422 35 0.01
423 74 0.01
424 16 0.00
425 46 0.01
426 18 0.00
427 3 0.00
428 5 0.00
429 3 0.00
430 4 0.00
431 6 0.00
432 10 0.00
433 3 0.00
434 2 0.00
435 7 0.00
436 22 0.00
437 11 0.00
438 16 0.00
439 17 0.00
440 29 0.00
441 7 0.00
442 6 0.00
443 20 0.00
444 15 0.00
445 6 0.00
446 4 0.00
447 10 0.00
448 10 0.00
449 3 0.00
450 8 0.00
451 11 0.00
452 14 0.00
453 45 0.01
454 72 0.01
455 139 0.02
456 322 0.05
457 55 0.01
458 40 0.01
459 128 0.02
460 360 0.05
461 426 0.06
462 562 0.08
463 1860 0.27
464 1079 0.16
465 240 0.03
466 343 0.05
467 8 0.00
468 10 0.00
469 8 0.00
470 6 0.00
471 9 0.00
472 10 0.00
473 7 0.00
474 6 0.00
475 7 0.00
476 6 0.00
477 2 0.00
478 5 0.00
479 1 0.00
480 21 0.00
481 13 0.00
482 7 0.00
483 4 0.00
484 2 0.00
485 29 0.00
486 30 0.00
487 27 0.00
488 24 0.00
489 31 0.00
490 31 0.00
491 17 0.00
492 6 0.00
493 9 0.00
494 8 0.00
495 14 0.00
496 29 0.00
497 24 0.00
498 39 0.01
499 42 0.01
500 20 0.00
501 9 0.00
502 5 0.00
503 5 0.00
504 28 0.00
505 3 0.00
507 1 0.00
508 7 0.00
509 3 0.00
511 5 0.00
512 1 0.00
513 4 0.00
515 3 0.00
516 2 0.00
517 8 0.00
518 7 0.00
519 3 0.00
520 2 0.00
522 7 0.00
523 12 0.00
524 8 0.00
525 10 0.00
526 10 0.00
527 6 0.00
528 3 0.00
529 2 0.00
531 1 0.00
532 7 0.00
533 7 0.00
534 4 0.00
535 8 0.00
536 7 0.00
537 6 0.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (465 bp):
AAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTC
TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCATG
ATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCAAGCAAGATGATAAGTCCTTCGGGCCATCC
ATAAGACCTTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGAGAAATGTTTCTCATTTAAAT
ATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGG
TAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTCTTCGGGTCATCTATAA
GCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCAC
ATGTCTTTAG
Found at i:533435 original size:695 final size:691
Alignment explanation
Indices: 532051--541730 Score: 4136
Period size: 695 Copynumber: 13.9 Consensus size: 691
532041 TTTAAATATT
* * * * * *
532051 AAAAAATGAGAAAGGTTTCTCATTTATACATGAAATTTGAAATTTCTGAAAAGTAAGAAACGTTT
1 AAAAAATGAGAAATGTTTCTCATTTAAATATGAAATTTAAAATTTTTGAAAAGTAAGAAAGGTTT
* * *
532116 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTATTTCAAGCAT
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAATCTTTCGAGCAT
* * *
532181 CATGCTTAAATCCTTCAGGTCATCTGTAAGCC-TTTCAGGCAAGATGATAAGTCCTTCGGGCCAT
131 GATGCTTAAATCCTTCAGGTCATCTGTAAGCCTTTTGA-GCAAGATGATAAGTCATTCGGGCCAT
* * * * * *
532245 CCATAAGACCTTTGGGCAGGATACTTTTACATGACTC-TAAAAAATGAGAAAGGTTTCTTATTTA
195 CCATAAGACCTTCGGGTAGGAT-GTTTTACATGTCTCTTAAAAAATGAGAAAGATTTCTCATTTA
*
532309 AATATGAAATTTG---A-----AAAGTAAGAAAGGTTTCTTACCTCGTAAACTATTTCCAAAATT
259 AATATGAAATTTGAAAATTTTGAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATT
* * ** * *
532366 GGTAAGTCCTTCAGGCCATCAGTAAGTATTTCGATCATGATGCTTAAATTTTTCAGGTCATTTGT
324 GGTAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGT
* * * *
532431 AAGCCTTTCGAGCAAGATGATAAGTCCTTCAAGCCATCCATAAGACCTTTGGGCAAGATGTTTTC
389 AAGCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCCATAAGACCTTCGGGTAGGATGTTTT-
* * * *
532496 ACACGT-CTTT-AGAAAAATGAGAAAGGTTTCCCATTTAAATATGATATTTGTAATTTTTGAAAA
453 -CACGTGATTTCA-AAAAATGAGAAA-GTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAA
* * * * * *
532559 GTAAGATATGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGCCCTTCCGGCCATTAGTAA
515 GT-AGA-AAGTTTCTTACCTAGTAAACTATTTCCAAAATTTGTAAGTCCTTCGGGCCATGAATAA
* * * * * * *
532624 ATCTTTTGAGCATGATACCTAAATCCTTCGGGTCATCTGTAAGCATTTCAAGCAAGATGATAGGT
578 GTCTTTCGAGCATGATACTTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGT
* * * ** * *
532689 CATTCATCCATCCTTAAGA-CTTCGGGTA-GAATATTTTCACGTGATTTC
643 CCTTGAGCCATCAATAAGACCTTCGGGTATG-ATGTTTTCACATGATTTC
*
532737 AAAAAATGAGAAATGTTTCTCATTTAAATATGAAATTTAAAAATTTTGAAAAGTAAGAAAGGTTT
1 AAAAAATGAGAAATGTTTCTCATTTAAATATGAAATTTAAAATTTTTGAAAAGTAAGAAAGGTTT
* *
532802 CTTATCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCCATCAGTAAATCTTTCGAGCAT
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAATCTTTCGAGCAT
* ** ** * * * *
532867 GACGCTTAAATTTTTTTGGTCATCTATAAGCCTTTTGAGCAAGACGATAAGACCTTCGGGCCATC
131 GATGCTTAAATCCTTCAGGTCATCTGTAAGCCTTTTGAGCAAGATGATAAGTCATTCGGGCCATC
* * * * * * *
532932 CAAAAGACCTTCGGGCAAGATTTTTTCACATGTCTCTTGATAAATGAGAAAGATTTCTCATTTGA
196 CATAAGACCTTCGGGTAGGATGTTTT-ACATGTCTCTTAAAAAATGAGAAAGATTTCTCATTTAA
* * * *
532997 ATCTGAAATTT-AAAATTTTGTAAGCTAAGAAAGGTTTCTTACCTAGTAAACTGTTTACAAAATT
260 ATATGAAATTTGAAAATTTTGAAAG-TAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATT
* * * * * * * * * *
533061 GGTAAGCCCTTCGGGCCATTAGTAATTCTTTCAAGAACGATGTTTAAATCTTTCAGGTCATCTGT
324 GGTAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGT
* * * * * * *
533126 AAGCCTTTCGAACTAGGTGATAAGTTCTTCGGGCCATCTATAAGACCTTCGGGTTGGATGTTTTC
389 AAGCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCCATAAGACCTTCGGGTAGGATGTTTTC
* ***
533191 ACGTGATTTCAAAAAATGTA-AAAGATTTCTTATTTAAATCCAAAATTTGAAATTTTTGAAAAGT
454 ACGTGATTTCAAAAAATG-AGAAAG-TTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGT
* ** * * *
533255 CAGAAAGATTTCTTACCTAGTAAACTATTTCCAAATTTTGTGGTGTCCTTAGGTCCATGAGTAAG
517 -AGAAAG-TTTCTTACCTAGTAAACTATTTCCAAAATTTGT-AAGTCCTTCGGGCCATGAATAAG
* * * *
533320 TCTTTCGAGCTTGATGCTTAAATCCTTCGGGTCATCTATAAGCCTTTCGACCAA-TTGATAAGTC
579 TCTTTCGAGCATGATACTTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTC
*
533384 CTTGAGCCATCAATAAGACCTTCAGGTATGATGTTTTCACATGATTTC
644 CTTGAGCCATCAATAAGACCTTCGGGTATGATGTTTTCACATGATTTC
* * * * * * *
533432 AAAAAATTAGAAAAGTTTCTCATTTAAATATGAAATTTGAATTTTTTGACAGGTAAGAATGGTTT
1 AAAAAATGAGAAATGTTTCTCATTTAAATATGAAATTTAAAATTTTTGAAAAGTAAGAAAGGTTT
* * ** * * *
533497 CTTACCTAGTAAACTATTTCTAAAATTAGTAAGTCAGTCGGACCATCAATAAGTCTTTCGAGCAT
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAATCTTTCGAGCAT
* * *
533562 GATGCTTAAATCCTTC-GTGTCATCTGTAAGCCTTTTTAACAAGATGATAAGTCTTTCGGGCCAT
131 GATGCTTAAATCCTTCAG-GTCATCTGTAAGCCTTTTGAGCAAGATGATAAGTCATTCGGGCCAT
* * * * * * * *
533626 CCATAATACTTTCGAGTATGATGTTTTA-AGGTGAT-TTCAAAAGATGAGGAAA-TTTTCTCATT
195 CCATAAGACCTTCGGGTAGGATGTTTTACATGT-CTCTT-AAAAAATGA-GAAAGATTTCTCA-T
*
533688 TTAAACTA--AAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCA
256 TTAAA-TATGAAATTTGAAAATTTTG-AAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCA
* * * * * *
533751 AAATTGGTAAGTCTTTCAAGCAATCAGTAAGTCTTTCAAGCATGATACTTAATTCCTTCGGGTCA
319 AAATTGGTAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCA
* * * * * *
533816 TCTTTAAGCGTTTCGAGCAAGATGAGAAGTCCTCCTGGCCATCCATAAGACCTTCGGGTATGATG
384 TCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCCATAAGACCTTCGGGTAGGATG
* * * ** * *
533881 TTTTCACGTTATTTCAAAAGATGAGGAAATTTTCTGTTTTAAA-ATTGAATTTTTAAATTTTTGA
449 TTTTCACGTGATTTCAAAAAATGA-GAAAGTTTCTCATTTAAATA-TGAAATTTGAAATTTTTGA
* * *
533945 AAAGTAGGAAAGGTTTCTTACGTAGTAAACTATTTCCAAAATTTGTAAGTCTTTCGGGCCATCAA
512 AAAGTA-GAAA-GTTTCTTACCTAGTAAACTATTTCCAAAATTTGTAAGTCCTTCGGGCCATGAA
* * * *
534010 TAAGTCCTTCGAGCATGATACTTAAATCCTTCGGGTCATCTGTAAGCATTTTGAGCAAGATGATA
575 TAAGTCTTTCGAGCATGATACTTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATA
* * * ** * ** *
534075 AGTCCTTCGGGCAATCCATAAGATTTTCGGGTGTGATGTTTTCATGTTATTTC
640 AGTCCTT-GAGCCATCAATAAGACCTTCGGGTATGATGTTTTCACATGATTTC
* * *
534128 AAAAGATGAGGAAAT-TTTCTCA-TTAAAAATTGTAATTTAAAATTTTTGAAAAGTAAGAAAGGT
1 AAAAAATGA-GAAATGTTTCTCATTTAAATA-TGAAATTTAAAATTTTTGAAAAGTAAGAAAGGT
* * * * * * * *
534191 TTCTTACCTAGTAAAATATTTCAAAAATTTGTAAGTCTTTCGTGCCATCACTAGATCTTTCGAAC
64 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAATCTTTCGAGC
* * * * * * *
534256 AT-AGTGCTTAAATCCTTCAGGT--TTTTTAAGCCTTTCGAGAAAGAGGATAAGTCATTTGGACC
129 ATGA-TGCTTAAATCCTTCAGGTCATCTGTAAGCCTTTTGAGCAAGATGATAAGTCATTCGGGCC
* * **
534318 ATCTATAAGACCTTCGGGTTGGATGTTTTAACATGTCTCTCGAAAAATGAGAAA-AGTTTCTCAT
193 ATCCATAAGACCTTCGGGTAGGATGTTTT-ACATGTCTCTTAAAAAATGAGAAAGA-TTTCTCAT
* * *
534382 TTTAATATGAAATTTGAAAATTTTGAAAAGTAAGAAAGGTTTCTTACATAGTAAACTATTTCTAA
256 TTAAATATGAAATTTGAAAATTTTG-AAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAA
** * * * * *
534447 AATTGGTAAAACCATCATGCCATTAGTTAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCTT
320 AATTGGTAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCAT
* * * * * *
534512 GTGTAAGCCTTTCGAGCAAGATAATACGTCCTTCAGGCCATCCATCACACCTTCGGGTAGGTTGT
385 CTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCCATAAGACCTTCGGGTAGGATGT
* * *
534577 TTTCACGTGATTTCAAAAAATGAGAAATGTGTCTCATTTGAATATGAAATTTGGAATTTTTGAAA
450 TTTCACGTGATTTCAAAAAATGAGAAA-GTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAA
** * *
534642 AGTATGAAAGGTTTCTTACCTAGTAAACTATTTTAAAAATTGGAAAGTCCATT-GGGCCATGAAT
514 AGTA-GAAA-GTTTCTTACCTAGTAAACTATTTCCAAAATTTGTAAGTCC-TTCGGGCCATGAAT
* * ** * * *
534706 AAGACTTTCGAGCATGAT-CTTAATTTTTTTGGGTCATCTATAAGTCTTTCGAGTAAGATGATAA
576 AAGTCTTTCGAGCATGATACTTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAA
* * * * * * *
534770 GACCTTCAGGCCATCAAAAAGTCCTTTGGGTAGGATGTTTTCACAT-ATGGCTC
641 GTCCTTGA-GCCATCAATAAGACCTTCGGGTATGATGTTTTCACATGAT--TTC
* * * * *
534823 AAAAAATGACAAATGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGTAGAGTAAGAAAGG-TT
1 AAAAAATGAGAAATGTTTCTCATTTAAATATGAAATTTAAAATTTTTGAAAAGTAAGAAAGGTTT
* * * * *
534887 CTTACATAGTAAACTATTTCCAAAATTGGTAAGCCCTTCGGGCAATTAGT-AAGCTTTTCGAGCA
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAATC-TTTCGAGCA
* * * *
534951 TGATGTTTAAATCCTTCATGTCATATGCAAG-CTTTTCGAGCAAGATGATAAGTCATTCGGGCCA
130 TGATGCTTAAATCCTTCAGGTCATCTGTAAGCCTTTT-GAGCAAGATGATAAGTCATTCGGGCCA
* *
535015 TCTATAAGACCTTCGGGTAGGATGTTTT-CATGTGAT-TTCAAAAAATGAGAAAGATTTCTCATT
194 TCCATAAGACCTTCGGGTAGGATGTTTTACATGT-CTCTT-AAAAAATGAGAAAGATTTCTCATT
* *
535078 TAAATAT-AGAATTTGAAAATTTTGTAAAGTCAGTAAGGTTTCTTACCTAGTAAACTATTTCCAA
257 TAAATATGA-AATTTGAAAATTTTG-AAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAA
* * ** * * *
535142 ATTTGGTAGGTTATTCGGGCCATCAGTAAGT-TTTCGAGCATGATGTTTAAATCCTTCGGGCCAT
320 AATTGGTAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCAT
* * * * * **
535206 CTGTAAGCCTTTCAAACAAGATGATAAGTCCTT-TGAGCCATCCATAAGAACTTCAGACAGGATG
385 CTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAG-GCCATCCATAAGACCTTCGGGTAGGATG
* * ** * * * *
535270 TTTTCACATGTCTTTTGAAAAATGAGAAAAGTTTCTCATTTAAATTTGAAAATTAAAAGTTTTGA
449 TTTTCACGTG-ATTTCAAAAAATGAG-AAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGA
*
535335 AAAGTAAGAAAGTTTTTTACCTAGTAAACTATTTCCAAAA-TTGCTAAGTCCTTCGGGCCATCG-
512 AAAGT-AGAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTTG-TAAGTCCTTCGGGCCAT-GA
* * * * ** *
535398 ATAATTATGTCGAGCATGATGA-GTAAATCCTTCGGGTCATCTATAAATCTTTCGATCAAGATGA
574 ATAAGTCTTTCGAGCATGAT-ACTTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGA
* * * ** **
535462 TAAGTCCTTTGAG----C---AAGACGTT---TTCA-CATGTTTTCGA-AAAATTAG
638 TAAGTCC-TTGAGCCATCAATAAGACCTTCGGGT-ATGATGTTTTC-ACATGATTTC
*** * * * * * *
535507 AAAACAATTTCCAAA-ATTTATCATTAAAATCTTTTTTGAAAAATT-AAATTTTTGAGAAAATAA
1 AAAA-AA-TGAGAAATGTTTCTCATTTAAA-----TATG-AAATTTAAAATTTTTGA-AAAGTAA
* * * *** * * * ** **
535570 CCAATTCAGATTCCCATGTTTGGTGGCGGCTAGACAAGCTCCGATAAGAGAAGGTAA-T-CTTCC
57 -GAA---AGGTT----TCTTACCT---AG-TAAACTATTTCC-A-AA-A-TTGGTAAGTCCTT--
* * * * ** * * * ** * ** *
535633 CTGAAGAACACTGGAATGAATCAACACTCTTTTGTTA-TTTTAT-TTCTAAA--ATAAAAGAAAG
104 C-G--G-GC-C----ATCAGT-AA-A-TCTTTCG--AGCATGATGCT-TAAATCCTTCAGGTCAT
** * * * * * * ** * * * *
535694 GAGAAAAACATTTTCA--AACAAGAT-AGTCCCAATTTTGG-AAGGTCCTTGAAG-----CGAGC
154 CTG-TAAGCCTTTTGAGCAAGATGATAAGT--C-ATTCGGGCCA--TCCAT-AAGACCTTCGGGT
* ** * ** * * *
535750 AAGACCCATTTTGC--CCCTATTAGAGAAAA--AGAATGAGTGATGC-CA---AGAATGATGAAG
212 AGGA--TGTTTTACATGTCTCTTA-A-AAAATGAGAAAGA-T--TTCTCATTTA-AAT-ATGAA-
** * * * * *** ** * ***
535807 CA-TTCCATATTCTTGAAAG-AA-AATGCTATGAGAAATCAG-AAA-GATTGGAGGATAGAACTT
267 -ATTTGAAAATT-TTGAAAGTAAGAAAGGTTTCTTACCT-AGTAAACTATT--TCCA-A-AA-TT
** * * ** * * ** * * * *
535867 -GTAACACTTTCTCGTGACGTTGTCGGTAA-CCCATCGAG-A--AAGC-GATGATCGC--C--CT
324 GGTAAGTCCTTC-AG-G-C--CATCAGTAAGTCTTTCGAGCATGATGCTTA-AATC-CTTCGGGT
* * * * *** * * ** *
535922 -ATTTGAAAGGGGCACATATCCCAGC--GTATAGA-AA-AAATGCAAG--A-GGAT--GACCAAT
382 CATCTGTAA---GC-C-T-TTCGAGCAAG-AT-GATAAGTCCTTCAGGCCATCCATAAGACC-TT
* *** ** ** * * ** * * *
535977 C---AAGGATGAATTTTGGCACCAAAATTTGGATGAGTCATGAAAGTACCCACATTGGAGGATGA
438 CGGGTAGGATG--TTTT--CA-CGTGATTTCAAAAAATGA-GAAAGT-TTCTCATT-TA-AAT-A
** ** * * * * * ** * * *
536039 CCAAGAACTCATATCATGTTG-AGA-TA-ACAAGGTTCAGATCGA-AAAGACATTAAGATTGAGT
493 TGAA-ATTTGAAAT--TTTTGAAAAGTAGA-AAGTTTCTTACCTAGTAA-AC--T---ATT---T
** * * * ** * * * * * *
536100 CTCGCAACTTGGAGTGTCAGT-GGAAGACCATGAATTTGAGCAGAGCTTACCAGGA-AAAAC--A
545 C-CAAAATTTGTA-AGTCCTTCGG--G-CCATGAA--T-A--AG-TCTTTCGAGCATGATACTTA
* *** * ** ** ** * * **
536161 AA-CCATCCAAAAATCAAT-TAATTGTAGAGTTCTAAAAAAATAGTTCTGAAAGAGTAATTGAGC
599 AATCC-TTC--GGGTC-ATCT-A-T-AAGCCTT-T-CGAGCA-AG--ATGATA-AGTCCTTGAGC
* * * * * * * ***
536224 CAAATGACAT-AGA--AT-GGCATCAAGATCATATT-AC-TAACCAC
651 C--ATCA-ATAAGACCTTCGG-GT-ATGAT-GTTTTCACATGATTTC
* **** ** * ** **
536265 AATAAGAATTTGAGAGA--TAAAACATTT-CCTCTGAAA--TAAAGA---CAGAAAACAAAGACC
1 AA-AA-AA--TGAGAAATGTTTCTCATTTAAATATGAAATTTAAA-ATTTTTGAAAAGTAAG---
* * * * * * * ** * * ****
536322 ACAAGATGATTGAGCTGATCTTCAGAAGAATGCAAGCTT--GAAA-TCATAAGTTTCTACACTAA
58 A-AAG--G-TT--TCTTA-CCT-AGTA-AA--CTA-TTTCCAAAATTGGTAAG-TCCTTC-GGGC
* ** * * * * * ****** * *
536384 TATCTAAGTAAA-CACTAGAG-AAGAGTGATCACAGAAAGAAGGCCTAAT-TCT---CCATTTTA
109 CATC--AGTAAATCTTTCGAGCATGA-TGCTTAAATCCTTCAGG--TCATCTGTAAGCC-TTTT-
* * *** * * * * ** * * *****
536443 AAGACAAAGGAAAATTGAATCAGT-ATTTATG-CATGCATGAGAACATC-ATTTGAATAAGAGA-
167 GAG-C-AA-G---A-TG-ATAAGTCATTCGGGCCATCCATAAGACCTTCGGGTAGGATGTTTTAC
** * *** * ** ** * *
536504 AAATC-CATT--AAATTGTA-TTCGTATTTCACACATAAACGTATG-GTTTTTATAGATCTTCT-
224 ATGTCTC-TTAAAAAATG-AGAAAG-ATTTCTCATTTAAA--TATGAAATTTGA-AAAT-TT-TG
* * * * * * * * * * ** * **
536563 AAGGAAAAGAAAAGATTCAT-GCTATTAAA--A-TCCCAACAAGTAG-AAGATATAATTAAAACC
281 AAAG-TAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAA-AATTGGTAAG---TCCTTCAGGCC
* ** * ** * * ** * ** *
536623 -TCAAATACAGGGAATCATATTTAAGGAGGTAGAACCTGAAGA-AC--AAGGTGGA-C-CCAATC
341 ATC-AGTA-A--G--TC-T-TTCGAGCA--T-GATGCTTAA-ATCCTTCGGGT-CATCTGTAAGC
* * * * * * * ***** * * *** *
536682 C-ATAGAGGAAG-T-ATTA--CTTTAAAGTGGGGCATATTG-CCTGACCATTA-AATCGTTTT--
393 CTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCCATA-AGACCT-TCGGGTAGGAT-GTTTTCA
* * *
536738 -GTAAATATT-AAAAAATGAGAAAGGTTTCTCATTTAAACATGAAATTTGAAATTTCTGAAAAGT
455 CGT-GAT-TTCAAAAAATGAGAAA-GTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGT
* * * *
536801 AAGAAAAGTTTCTTACCTAGTAAACTATTTCAAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGT
517 -AG-AAAGTTTCTTACCTAGTAAACTATTTCCAAAATTTGTAAGTCCTTCGGGCCATGAATAAGT
* * * ** * *
536866 ATTTCAAGCATCATTTTTAAATCCTTCAGGTCATCTGTAAGCCTTTC-AGGCAAGATGATAAGTC
580 CTTTCGAGCATGATACTTAAATCCTTCGGGTCATCTATAAGCCTTTCGA-GCAAGATGATAAGTC
* * * * * *
536930 CTTCGGGCCATCCATAAGACCTTTGGGCAGGATAGTTTT-ACATGA-CTC
644 CTT-GAGCCATCAATAAGACCTTCGGGTATGAT-GTTTTCACATGATTTC
*
536978 TAAAAAATGAGAAATGTTTCTTATTTAAATATG-------AAA--TTTGAAAAGTAAGGAAAGGT
1 -AAAAAATGAGAAATGTTTCTCATTTAAATATGAAATTTAAAATTTTTGAAAAGTAA-GAAAGGT
* * * * * * *
537034 TTCTTACCTCGTAAACTATTTCCAAAATTAGCAAGTCCTTCGGGCCATCAGTAAGTATTTTGATC
64 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAATCTTTCGAGC
* * * * **
537099 ATGATGCTTAAAT-TTTCCAGGTCATTTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAAGCC
129 ATGATGCTTAAATCCTT-CAGGTCATCTGTAAGCCTTTTGAGCAAGATGATAAGTCATTCGGGCC
* * ** * * *
537163 ATCCATAAGACCTTTGGGCAATATGTTTTCACACGTCTC-TAGAAAAATGAGAAAGGTTTCCCAT
193 ATCCATAAGACCTTCGGGTAGGATGTTTT-ACATGTCTCTTA-AAAAATGAGAAAGATTTCTCAT
* * * * * * *
537227 TTAAATATGATATTTGTAATTTTTGAAAAGTATGATATGTTTCTTATCTAGTAAACTATTTCCAA
256 TTAAATATGAAATTTGAAAATTTTG-AAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAA
* * * * * *
537292 AATTGGTAAGCCCTTCCGGCCATTAGTAAATCTTTTGAGCATGATACTTAAATCCTTCGGGTCAT
320 AATTGGTAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCAT
* * * * * *
537357 CTGTAAGCATTTTGAGCAAGATGATAGGTCATTC-GTGCCATCCATAAGA-CTTCGGGTAGAATA
385 CTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAG-GCCATCCATAAGACCTTCGGGTAGGATG
* * * *
537420 TTTTCACGTGATTTCAAAAAACGAGGAATGTTTCTTATTTAAATATGAAATTT-AAAATTTTGAA
449 TTTTCACGTGATTTCAAAAAATGA-GAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAA
* * ***
537484 AAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCCATCTGT
513 AAGT-AGAAA-GTTTCTTACCTAGTAAACTATTTCCAAAATTTGTAAGTCCTTCGGGCCATGAAT
* * ** * * * *
537549 AAGTCTTTTGAGCATGATGCTTAAATTTTTTGGGTCAT-TGTAAGCCTTTTGAGTAAGATGATAA
576 AAGTCTTTCGAGCATGATACTTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAA
* * * * *
537613 GACCTTCGGGGCCATCCAA-AAGACCTTCTGGTAGGATGTTTTAACATG-TCTCTC
641 GTCCTT--GAGCCAT-CAATAAGACCTTCGGGTATGATGTTTTCACATGAT-T-TC
* * * * * *
537667 GAAAAATGAGAAAGGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGTAAAGCAAGAAAGGTTT
1 AAAAAATGAGAAATGTTTCTCATTTAAATATGAAATTTAAAATTTTTGAAAAGTAAGAAAGGTTT
* * * * * *
537732 CTTACCTAGTAAACCATTTCAAAAATTGGTAAG-CCATTTGGGCCATTAGTAAGTCTTTCGATCA
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC-TTCGGGCCATCAGTAAATCTTTCGAGCA
* * * * *
537796 CGATGTTTAAATCTGCTT--GGTCATCT-TAAGTCTTTTG-GCAAAATGATAAGTCCTTCGGGCC
130 TGATGCTTAAATC--CTTCAGGTCATCTGTAAGCCTTTTGAGCAAGATGATAAGTCATTCGGGCC
* * *
537857 -TCTATAAGACCTT-GAGTAGGATGTTTTCACGTGAT-TC--AAAAAAT-AG-AAGATTTCTCAT
193 ATCCATAAGACCTTCGGGTAGGATGTTTT-ACATG-TCTCTTAAAAAATGAGAAAGATTTCTCAT
* * * * * *
537915 TTAAATCTAAAATTTGAAATTTTTGTAAAGTCAGATAGATTT-TTA-CTAGTAAACTATTTCCAA
256 TTAAATATGAAATTTGAAAATTTTG-AAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAA
* * * * * * ** *
537978 ATTTGGTAAGTCCTTCGGGCCATCAGTAAGCCTTTCGACCA-GATG-ATAAGTCCTTCTAGCCAT
320 AATTGGTAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCAT
** ** * * *** * ** * *
538041 CAATAAGACCTTTC-AGGTAG--GAT--GT-TTTCACATGATTTCAATAA-A-----AAGAAGAA
385 CTGTAAG-CCTTTCGAGCAAGATGATAAGTCCTT--CAGGCCATCCATAAGACCTTCGGGTAG-G
* * * * * ** ** ** * *
538094 AAG-CTTCTCTTTAAATC-TGAAATTTG-AA-TTT-T--TTGAAA-A-GTAA---GAAAGGTTTC
446 ATGTTTTCACGTGATTTCAAAAAATGAGAAAGTTTCTCATTTAAATATGAAATTTGAAA--TTT-
** * ** * ** * *** *
538147 TT-ACCTAGTA-AACTA-TTTCTAAAATTGGT-ATGTCA-TTCGAAACATCAATAAGTCTTTCGA
508 TTGA-AAAGTAGAA--AGTTTCT-TACCTAGTAAACT-ATTTCCAAA-ATTTGTAAGTCCTTCG-
*** ** * * * * * * * * * *
538207 GTATAATGCTTAAATCCTTT-GTG--TCATCCGT-AAGCCTTTTGAGATAGAT-AATAAGTCCTT
566 G-GCCATGAATAAGT-CTTTCGAGCATGATACTTAAATCC-TTCG-GGT-CATCTATAAG-CCTT
* * * * ** * ** **
538267 T-GGGC--CATCCATAAGACCTT-AG-GGT--ATGATG-TTTTCACGT-T-A---TTTCA-A--A
625 TCGAGCAAGAT-GATAAGTCCTTGAGCCATCAAT-AAGACCTTCGGGTATGATGTTTTCACATGA
538316 ----
688 TTTC
* ** * * * *
538316 AGATGA-G-GAAA-GTTTCTCATTTAAA-ACTAAAATTTGAAAGTTTT-ATAAAGTAAGAAATGT
1 AAAAAATGAGAAATGTTTCTCATTTAAATA-TGAAATTTAAAATTTTTGA-AAAGTAAGAAAGGT
* * * *
538376 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAGGTCTTTCGGGCCATCGGTAAGTCTTTCGAGC
64 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAATCTTTCGAGC
* * * * * *
538441 ATGATACTAAAATCCTTCGGGTCATCTGTAAG-CTTTTGAAGCAAGATGATAAGTCCTTCAGGCA
129 ATGATGCTTAAATCCTTCAGGTCATCTGTAAGCCTTTTG-AGCAAGATGATAAGTCATTCGGGCC
* * *
538505 ATCCATAAGACCTTCGGGTATGATGTTTTCACGTGAT-T-TTAAAAGATGAGGAAAG-TTTCTCA
193 ATCCATAAGACCTTCGGGTAGGATGTTTT-ACATG-TCTCTTAAAAAATGA-GAAAGATTTCTCA
* * *
538567 TTTAAA-ACT-ATAATTTTAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTC
255 TTTAAATA-TGA-AATTTGAAAATTTTG-AAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTC
* * * * * *
538630 CAAAATTGGTAAGT-CTCTC-GGACCATGACTAAGTCTTTCGAACATAATGCTTAAATCTTTTGG
317 CAAAATTGGTAAGTCCT-TCAGG-CCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGG
* * * * * * * *
538693 GT--T-TTTAAGCCTTTCGTGAAAGAGGATAAGTCATTC-GAGACATCTATAAGTCCTTCGGGTA
380 GTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAG-GCCATCCATAAGACCTTCGGGTA
*
538754 GGATGTTTTCACACGT-CTCTT-AAAAAATGAGAAAGATTTCTCATTTTAAA-ATGAAATTTGAA
444 GGATGTTTT--CACGTGAT-TTCAAAAAATGAGAAAG-TTTCTCA-TTTAAATATGAAATTTGAA
* * ** ** * *
538816 AATTTTGATAAGTAAGAAAGGTTTCTTACAAAGTAAACTATTTTCTGAAA-TCGATAAGCCCTTC
504 ATTTTTGAAAAGT-AGAAA-GTTTCTTACCTAGTAAACTA-TTTCCAAAATTTG-TAAGTCCTTC
* * * * * * **
538880 GGGCCATTAGTAAGTCTTTCGAGCATGGTGCTTAAATCCTTCGGGTTATC-AGTATGCCTTTATA
565 GGGCCATGAATAAGTCTTTCGAGCATGATACTTAAATCCTTCGGGTCATCTA-TAAGCCTTTCGA
* * * *
538944 GCAAGATGATAAGACCTTCTAGCCATCCAA-AAGACCTTCGGGCAGGATGTTTTCACATG-TCTC
629 GCAAGATGATAAGTCCTT-GAGCCAT-CAATAAGACCTTCGGGTATGATGTTTTCACATGAT-T-
539007 TC
690 TC
* ** * * * *
539009 AAAAACTGAGAAA-ACTTCTCATTTAAATATGAAATTTGAAATTTTTAAAAAGTAAGATATGTTT
1 AAAAAATGAGAAATGTTTCTCATTTAAATATGAAATTTAAAATTTTTGAAAAGTAAGAAAGGTTT
* * * *
539073 CTTACCTAGTAAACTATTTCCAAAATTGGTAAG-CCTTTCAGGCCATTAGTAAGTCTTTTGAGCA
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC-TTCGGGCCATCAGTAAATCTTTCGAGCA
* * * *
539137 TGATGCTTAAATCCTTCGGGTCATTTGTAAGCCTTTCGAGCAAGATGATAAGTCATTCAGGCCAT
130 TGATGCTTAAATCCTTCAGGTCATCTGTAAGCCTTTTGAGCAAGATGATAAGTCATTCGGGCCAT
** * * ** **
539202 CCATAAGA-CTTCAAGTAGGATATTTTCACATGAT-T-TCAAAATGTGAGAAATTTTTCT-ATTT
195 CCATAAGACCTTCGGGTAGGATGTTTT-ACATG-TCTCTTAAAAAATGAGAAAGATTTCTCA-TT
* * *
539263 TAAATCTGAAATTTGAAATTTTTGAAAAGTAAAAAAGGTTTCTTACCTAGTAAACTATTTCCAAA
257 TAAATATGAAATTTGAAAATTTTG-AAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAA
** ** *
539328 ATTGGTAAGTCCTTTTGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATTTTTTGGGTCATC
321 ATTGGTAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATC
** * * * * *
539393 TGTAAGCCCTTT-GTTCAAGATGATAAGACATTCGGGCCATCCA-AATGACCTTCGGGCATGATG
386 TGTAAG-CCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCCATAA-GACCTTCGGGTAGGATG
* * *
539456 TTTTCACAT-ATCTCTCAAAAAATGAGAAAGGTTTCTCATTTAAATCTGAAATTTGAATTTTTTG
449 TTTTCACGTGAT-T-TCAAAAAATGAGAAA-GTTTCTCATTTAAATATGAAATTTGAAATTTTTG
* * * * * * *
539520 TAAACTAAGAAAGGTTTCTTACCTAGTAAACTGTTTCCAAAATTGGTAAGCCCTTCAGGCCATTA
511 AAAAGT-AGAAA-GTTTCTTACCTAGTAAACTATTTCCAAAATTTGTAAGTCCTTCGGGCCATGA
* * * ** ** * * * * *
539585 GTAAGTCTTTCAAGAACAATGTTTAAATCTTTCAGGTCATCTGTAAGCCTTTCGAACTAGATGAT
574 ATAAGTCTTTCGAGCATGATACTTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGAT
* * * *
539650 AAGTCCTTCG-GACCATCTATAAGACCTTTGGGTACGATGTTTTCACGTGATTTC
639 AAGTCCTT-GAG-CCATCAATAAGACCTTCGGGTATGATGTTTTCACATGATTTC
* * * * * * *
539704 AAAACAATGAGAAA-GATTTCTTATTTAAATCTAAAATTTGAAATTTTTGAAAAGTCATAAAGAT
1 AAAA-AATGAGAAATG-TTTCTCATTTAAATATGAAATTTAAAATTTTTGAAAAGTAAGAAAGGT
* * *
539768 TTCTTACCTAGTAAACTATTTCCAAATTTGGTAAGT-CTTCGGGCCATCAGTAAGTCTTTCGAAC
64 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAATCTTTCGAGC
* * * *
539832 ATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCT-A-CAA-ATTGATAAGTCCTTTGAGC
129 ATGATGCTTAAATCCTTCAGGTCATCTGTAAGCCTTT-TGAGCAAGA-TGATAAGTCATTCGGGC
* * * * *
539894 CATCAATAAGACCTTCGGGTATGATGTTTTCACATG-AT-TTCAAAATTGAGAAA-AGTTTCTCA
192 CATCCATAAGACCTTCGGGTAGGATGTTTT-ACATGTCTCTTAAAAAATGAGAAAGA-TTTCTCA
* * *
539956 TTTAAATATGAAATTT-CAAATTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTCTA
255 TTTAAATATGAAATTTGAAAATTTTG-AAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCA
* * * * * * *
540020 AAATTGGGAAGTCATTCGGGCCATCAATAAGTCTTTCGAGCATGATGCTTATATCCTTCGTGTTA
319 AAATTGGTAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCA
* * * *
540085 TCTGTAATCCTTTTGAGCAGGATGATAAGTCCTTC-GAGCCATCCATAAGACCTTCGGGTATGAT
384 TCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAG-GCCATCCATAAGACCTTCGGGTAGGAT
* *
540149 GTTTTCACGTGATTTCAAAAGATGAGGAAATTTTCTCATTTAAA-ACTGAAATTTGAAATTTTTG
448 GTTTTCACGTGATTTCAAAAAATGA-GAAAGTTTCTCATTTAAATA-TGAAATTTGAAATTTTTG
* * * *
540213 AAAAGTAAGAAAGGTTTCTTA-CTAGTAAACTATTTCCAAAATTGGCAAGTCTTTCGGGCCATCA
511 AAAAGT-AGAAA-GTTTCTTACCTAGTAAACTATTTCCAAAATTTGTAAGTCCTTCGGGCCATGA
* * * *
540277 GTATGTCTTTCGAGCATGATACTTAAATCTTTCGGGTCATCTATAAGCATTTCGAGCAAGATGAT
574 ATAAGTCTTTCGAGCATGATACTTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGAT
* * * * * * * *
540342 AAG-CTTTCGGGCAATCCATGAGACCATCGGGTAAGATGTTTTCACGTGATTTC
639 AAGTCCTT-GAGCCATCAATAAGACCTTCGGGTATGATGTTTTCACATGATTTC
* * * * * * *
540395 AAAAGATAAGGTAA-GTTTCTCATTTAAA-ATTATAATTTGAAATTTTTGAAAATTAAGAAAGTT
1 AAAAAATGA-GAAATGTTTCTCATTTAAATATGA-AATTTAAAATTTTTGAAAAGTAAGAAAGGT
* * * * * * *
540458 TTCTTACCTAGCAAAATATTTCCAAAATTTGTAAGTCTTTCGGGCCATCACTAAGTCTTTCGAAC
64 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAATCTTTCGAGC
* * * * * * * * *
540523 ATAATTCTTAAAT-CTTCCA-GT--TTTTTAAGCCTTTCGAGAAAGAGGATAAGCCATTTGGGCC
129 ATGATGCTTAAATCCTT-CAGGTCATCTGTAAGCCTTTTGAGCAAGATGATAAGTCATTCGGGCC
* ** *
540584 ATCTATAAGACCTTCGGGTAGGATGGTTTTACATGTCTCTCGAAAAATGAGAAAGGTTTCTCATT
193 ATCCATAAGACCTTCGGGTAGGAT-GTTTTACATGTCTCTTAAAAAATGAGAAAGATTTCTCATT
* *
540649 TTAATATGAAATTTGAAAATTTTGAAAAGTAAGAAAGGTTTC-TACATAGTAAACTATTTCCAAA
257 TAAATATGAAATTTGAAAATTTTG-AAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAA
* * * * *
540713 ATTGGTAAGCCCTTCGGGCCATTAATAAGTCTTTCGAGCATGATGGTTAAATCCTTCGGGTCATC
321 ATTGGTAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATC
* * * * * *
540778 TGTAAACTTTTCGAGCAAGATTATAAGTCTTTCGGGCCATCCATCAA-ACCTTCGGGTAAGATGT
386 TGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCCAT-AAGACCTTCGGGTAGGATGT
* * *
540842 TTTCACGTAATTTCAAAAAATGAGAATGGTTTCTCATTTGAATATGAAATTTTGAAA-TTTTGAA
450 TTTCACGTGATTTCAAAAAATGAGAA-AGTTTCTCATTTAAATATGAAA-TTTGAAATTTTTGAA
* * * * *
540906 AATTATGAAATGTTTCTTACCTTGTAAACTATTTTCC-AAA-TTGCTACGTCCTTTGGGCCATCA
513 AAGTA-GAAA-GTTTCTTACCTAGTAAACTA-TTTCCAAAATTTG-TAAGTCCTTCGGGCCATGA
* * * * ** *
540969 ATAAGACTTTTGAACATGATAATTAAATTTTTTGGGTCATCTATAAGCCTTTCGAGCAAGATGAT
574 ATAAGTCTTTCGAGCATGATACTTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGAT
* * * * * * *
541034 AAGACCATCGAGCCATCCAA-ATGACCTTCAGGCAGGATGTTTTCACTTG-TCTCTC
639 AAGTCC-TTGAGCCAT-CAATAAGACCTTCGGGTATGATGTTTTCACATGAT-T-TC
* * *
541089 AAAAAATGAGAAATGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGTAAAGTAAGAAAGGTTT
1 AAAAAATGAGAAATGTTTCTCATTTAAATATGAAATTTAAAATTTTTGAAAAGTAAGAAAGGTTT
* * * * *
541154 CTTACCTAGTAAACTATTTCCAAAATTTGTAAGCCCTTCGGGGCCATTAGTAAGTCTTTTGAGCA
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTC-GGGCCATCAGTAAATCTTTCGAGCA
* * * * ** * *
541219 TGGTGTTTAAATCCTTCAAGTAATCTGTAAGTGTTTCGAGCAAGATGATAAGTCCTTCGGGCCAT
130 TGATGCTTAAATCCTTCAGGTCATCTGTAAGCCTTTTGAGCAAGATGATAAGTCATTCGGGCCAT
* * * *
541284 CTATAAGACCTTTGGGTAGGATGTTTTCACTTGAT-T-TCAAAAAATGAGAAAGATTTCTCATTT
195 CCATAAGACCTTCGGGTAGGATGTTTT-ACATG-TCTCTTAAAAAATGAGAAAGATTTCTCATTT
* * * *
541347 AAATCTAAAATTTGAAAATTTTGAAAAGTCAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAT
258 AAATATGAAATTTGAAAATTTTG-AAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAA
* * *
541412 TTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCAAGATGCTTAAATCCTTCAGGTCAT-T
322 TTGGTAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCT
* * * * * * * * **
541476 GTAAACCTTTCGAACAA-TTGATATGTCCTT-TGTGCCATCAATAACACTTTCAAGTAGGATGTT
387 GTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAG-GCCATCCATAAGACCTTCGGGTAGGATGTT
* *
541539 TTCACATGACTTC-AAAAATGAGAAAAGTTTCTCATTTAAATAT-AAA-TTG-AATTTCTTGAAA
451 TTCACGTGATTTCAAAAAATGAG-AAAGTTTCTCATTTAAATATGAAATTTGAAATTT-TTGAAA
* * * * * * * *
541600 TGT--AAGGTTTTTTACCTAGTAAACTATTTCTAAAATTGGTAAGTCATTCGTGCCATCAATAAG
514 AGTAGAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTTGTAAGTCCTTCGGGCCATGAATAAG
* ** * * * * *
541663 TCTTTTGAGCATGATGTTTAAATCCTTCGTGTCATCTGTAAGCATTTTGAGCTAGATGATAAGTC
579 TCTTTCGAGCATGATACTTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTC
541728 CTT
644 CTT
541731 CGGGCAATCC
Statistics
Matches: 6741, Mismatches: 1615, Indels: 1274
0.70 0.17 0.13
Matches are distributed among these distances:
644 3 0.00
646 120 0.02
647 9 0.00
648 22 0.00
649 14 0.00
650 21 0.00
651 6 0.00
652 2 0.00
653 48 0.01
654 17 0.00
655 48 0.01
656 7 0.00
657 21 0.00
658 2 0.00
659 2 0.00
660 1 0.00
661 1 0.00
662 7 0.00
663 7 0.00
664 1 0.00
665 13 0.00
666 19 0.00
667 34 0.01
668 23 0.00
669 22 0.00
670 9 0.00
671 1 0.00
672 13 0.00
673 26 0.00
674 17 0.00
675 39 0.01
676 26 0.00
677 4 0.00
678 1 0.00
679 5 0.00
680 14 0.00
681 11 0.00
682 8 0.00
683 9 0.00
684 34 0.01
685 42 0.01
686 304 0.05
687 177 0.03
688 149 0.02
689 163 0.02
690 136 0.02
691 333 0.05
692 264 0.04
693 175 0.03
694 978 0.15
695 1538 0.23
696 586 0.09
697 289 0.04
698 146 0.02
699 5 0.00
700 7 0.00
702 2 0.00
703 2 0.00
704 8 0.00
705 4 0.00
706 6 0.00
707 2 0.00
708 15 0.00
709 2 0.00
710 6 0.00
711 3 0.00
712 13 0.00
713 21 0.00
714 13 0.00
715 8 0.00
716 7 0.00
717 41 0.01
718 26 0.00
719 51 0.01
720 39 0.01
721 31 0.00
722 26 0.00
723 20 0.00
724 19 0.00
725 17 0.00
726 4 0.00
727 5 0.00
728 4 0.00
729 4 0.00
730 7 0.00
731 4 0.00
732 6 0.00
733 10 0.00
734 14 0.00
735 15 0.00
736 7 0.00
737 17 0.00
738 23 0.00
739 22 0.00
740 18 0.00
741 36 0.01
742 29 0.00
743 21 0.00
744 14 0.00
745 6 0.00
746 11 0.00
747 11 0.00
748 22 0.00
749 12 0.00
750 12 0.00
751 6 0.00
752 5 0.00
753 3 0.00
755 1 0.00
757 3 0.00
758 9 0.00
759 12 0.00
760 7 0.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (691 bp):
AAAAAATGAGAAATGTTTCTCATTTAAATATGAAATTTAAAATTTTTGAAAAGTAAGAAAGGTTT
CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAATCTTTCGAGCAT
GATGCTTAAATCCTTCAGGTCATCTGTAAGCCTTTTGAGCAAGATGATAAGTCATTCGGGCCATC
CATAAGACCTTCGGGTAGGATGTTTTACATGTCTCTTAAAAAATGAGAAAGATTTCTCATTTAAA
TATGAAATTTGAAAATTTTGAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGG
TAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAA
GCCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCCATAAGACCTTCGGGTAGGATGTTTTCAC
GTGATTTCAAAAAATGAGAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAGAA
AGTTTCTTACCTAGTAAACTATTTCCAAAATTTGTAAGTCCTTCGGGCCATGAATAAGTCTTTCG
AGCATGATACTTAAATCCTTCGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGTCCTTGAGC
CATCAATAAGACCTTCGGGTATGATGTTTTCACATGATTTC
Found at i:535461 original size:42 final size:41
Alignment explanation
Indices: 535383--535470 Score: 95
Period size: 42 Copynumber: 2.1 Consensus size: 41
535373 AATTGCTAAG
* *
535383 TCCTTCGGGCCATCGATAATTATGTCGAGCATGATGAGTAAA
1 TCCTTCGGGCCATCGATAAATATGTCGAGCAAGATGA-TAAA
* * * * * *
535425 TCCTTCGGGTCATCTATAAATCTTTCGATCAAGATGATAAG
1 TCCTTCGGGCCATCGATAAATATGTCGAGCAAGATGATAAA
535466 TCCTT
1 TCCTT
535471 TGAGCAAGAC
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
41 8 0.21
42 30 0.79
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (41 bp):
TCCTTCGGGCCATCGATAAATATGTCGAGCAAGATGATAAA
Found at i:535471 original size:232 final size:233
Alignment explanation
Indices: 532051--535475 Score: 3346
Period size: 232 Copynumber: 14.8 Consensus size: 233
532041 TTTAAATATT
* * * * *
532051 AAAAAATGAGAAAGGTTTCTCATTTATACATGAAATTTGAAATTTCTGAAAAGTAAGAAACGTTT
1 AAAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTT
* * *
532116 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTATTTCAAGCAT
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAATTCTTTCGAGCAT
* * * *
532181 CATGCTTAAATCCTTCAGGTCATCTGTAAGCCTTTC-AGGCAAGATGATAAGTCCTTCGGGCCAT
131 GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGA-GCAAGATGATAAGTCCTTTGAGCCAT
* * * *
532245 CCATAAGACCTTTGGGCAGGATACTTTT-ACATG-A-CTC
195 CCATAAGACCTTCGGGTAGGAT-GTTTTCACATGTATTTC
* *
532282 TAAAAAATGAGAAAGGTTTCTTATTT-AA-AT---A--TGAAA--TTTGAAAAGTAAGAAAGGTT
1 -AAAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTT
* * * * *
532338 TCTTACCTCGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATCAGTAAGTATTTCGATCA
65 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAATTCTTTCGAGCA
** * * **
532403 TGATGCTTAAATTTTTCAGGTCATTTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAAGCCAT
130 TGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTTGAGCCAT
* * * * *
532468 CCATAAGACCTTTGGGCAAGATGTTTTCACACGTCTTT-
195 CCATAAGACCTTCGGGTAGGATGTTTTCACATGTATTTC
* * * * * *
532506 AGAAAAATGAGAAAGGTTTCCCATTTAAATATGATATTTGTAATTTTTGAAAAGTAAGATATGTT
1 A-AAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTT
* * * * *
532571 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGCCCTTCCGGCCATTAGTAAATCTTTTGAGCA
65 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAATTCTTTCGAGCA
* * * * * * * *
532636 TGATACCTAAATCCTTCGGGTCATCTGTAAGCATTTCAAGCAAGATGATAGGT-CATTCATCCAT
130 TGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTTGAGCCAT
* * * *
532700 CCTTAAGA-CTTCGGGTAGAATATTTTCACGTG-ATTTC
195 CCATAAGACCTTCGGGTAGGATGTTTTCACATGTATTTC
* * *
532737 AAAAAATGAGAAATGTTTCTCATTTAAATATGAAATTTAAAAATTTTGAAAAGTAAGAAAGGTTT
1 AAAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTT
* * *
532802 CTTATCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCCATCAGTAAATCTTTCGAGCAT
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAATTCTTTCGAGCAT
* ** ** * * * * * *
532867 GACGCTTAAATTTTTTTGGTCATCTATAAGCCTTTTGAGCAAGACGATAAGACCTTCGGGCCATC
131 GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTTGAGCCATC
* * * * *
532932 CAAAAGACCTTCGGGCAAGATTTTTTCACATGTCTCTT-
196 CATAAGACCTTCGGGTAGGATGTTTTCACATGTAT-TTC
* * * * * *
532970 GATAAATGAG-AAAGATTTCTCATTTGAATCTGAAATTT-AAAATTTTG-TAAGCTAAGAAAGGT
1 AAAAAATGAGAAAAG-TTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAG-TAAGAAAGGT
* * * * * *
533032 TTCTTACCTAGTAAACTGTTTACAAAATTGGTAAGCCCTTCGGGCCATTAGTAATTCTTTCAAGA
64 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAATTCTTTCGAGC
* * * * * * * * * *
533097 ACGATGTTTAAATCTTTCAGGTCATCTGTAAGCCTTTCGAACTAGGTGATAAGTTCTTCGGGCCA
129 ATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTTGAGCCA
* * *
533162 TCTATAAGACCTTCGGGTTGGATGTTTTCACGTG-ATTTC
194 TCCATAAGACCTTCGGGTAGGATGTTTTCACATGTATTTC
* * *** * *
533201 AAAAAATG-TAAAAGATTTCTTATTTAAATCCAAAATTTGAAATTTTTGAAAAGTCAGAAAGATT
1 AAAAAATGAGAAAAG-TTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTT
* * ** * * * *
533265 TCTTACCTAGTAAACTATTTCCAAATTTTGTGGTGTCCTTAGGTCCATGAGTAAGTCTTTCGAGC
65 TCTTACCTAGTAAACTATTTCCAAAATTGGT-AAGTCCTTCGGGCCATCAGTAATTCTTTCGAGC
* * * *
533330 TTGATGCTTAAATCCTTCGGGTCATCTATAAGCCTTTCGACCAA-TTGATAAGTCC-TTGAGCCA
129 ATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTTGAGCCA
* * *
533393 TCAATAAGACCTTCAGGTATGATGTTTTCACATG-ATTTC
194 TCCATAAGACCTTCGGGTAGGATGTTTTCACATGTATTTC
* * * * *
533432 AAAAAATTAGAAAAGTTTCTCATTTAAATATGAAATTTGAATTTTTTGACAGGTAAGAATGGTTT
1 AAAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTT
* * ** * * *
533497 CTTACCTAGTAAACTATTTCTAAAATTAGTAAGTCAGTCGGACCATCAATAAGTCTTTCGAGCAT
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAATTCTTTCGAGCAT
* ** * *
533562 GATGCTTAAATCCTTCGTGTCATCTGTAAGCCTTTTTAACAAGATGATAAGT-CTTTCGGGCCAT
131 GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTT-GAGCCAT
* * * * *
533626 CCATAATACTTTCGAGTATGATGTTTT-A-AGGTGATTTC
195 CCATAAGACCTTCGGGTAGGATGTTTTCACATGT-ATTTC
* * *
533664 AAAAGATGAGGAAATTTTCTCATTTTAAACTA--AAATTTGAAATTTTTGAAAAGTAAGAAAGGT
1 AAAAAATGAGAAAAGTTTCTCA-TTTAAA-TATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGT
* ** * * *
533727 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTCAAGCAATCAGTAAGTCTTTCAAGC
64 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAATTCTTTCGAGC
* * * * * *
533792 ATGATACTTAATTCCTTCGGGTCATCTTTAAGCGTTTCGAGCAAGATGAGAAGTCCTCCTG-GCC
129 ATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCT-TTGAGCC
* *
533856 ATCCATAAGACCTTCGGGTATGATGTTTTCACGT-TATTTC
193 ATCCATAAGACCTTCGGGTAGGATGTTTTCACATGTATTTC
* * * ** * * *
533896 AAAAGATGAGGAAATTTTCTGTTTTAAA-ATTGAATTTTTAAATTTTTGAAAAGTAGGAAAGGTT
1 AAAAAATGAGAAAAGTTTCTCATTTAAATA-TGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTT
* * * * * *
533960 TCTTACGTAGTAAACTATTTCCAAAATTTGTAAGTCTTTCGGGCCATCAATAAGTCCTTCGAGCA
65 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAATTCTTTCGAGCA
* * * * * *
534025 TGATACTTAAATCCTTCGGGTCATCTGTAAGCATTTTGAGCAAGATGATAAGTCCTTCGGGCAAT
130 TGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTTGAGCCAT
**
534090 CCATAAGATTTTCGGGT-GTGATGTTTT--CATGTTATTTC
195 CCATAAGACCTTCGGGTAG-GATGTTTTCACATG-TATTTC
* * * * * *
534128 AAAAGATGAGGAAATTTTCTCA-TTAAAAATTGTAATTTAAAATTTTTGAAAAGTAAGAAAGGTT
1 AAAAAATGAGAAAAGTTTCTCATTTAAATA-TGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTT
* * * * * * *
534192 TCTTACCTAGTAAAATATTTCAAAAATTTGTAAGTCTTTCGTGCCATCACTAGA-TCTTTCGAAC
65 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTA-ATTCTTTCGAGC
* * * * * *
534256 AT-AGTGCTTAAATCCTTCAGGT--TTTTTAAGCCTTTCGAGAAAGAGGATAAGTCATTTG-GAC
129 ATGA-TGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTTGAG-C
* * * * *
534317 CATCTATAAGACCTTCGGGTTGGATGTTTTAACATGTCTCTC
192 CATCCATAAGACCTTCGGGTAGGATGTTTTCACATGTATTTC
* * *
534359 GAAAAATGAGAAAAGTTTCTCATTTTAATATGAAATTTGAAAATTTTGAAAAGTAAGAAAGGTTT
1 AAAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTT
* * ** * ** * * *
534424 CTTACATAGTAAACTATTTCTAAAATTGGTAAAACCATCATGCCATTAGTTAGTCTTTCGAGCAT
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAATTCTTTCGAGCAT
* * * * *
534489 GATGCTTAAATCCTTCGGGTCTTGTGTAAGCCTTTCGAGCAAGATAATACGTCC-TTCAGGCCAT
131 GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTTGA-GCCAT
* * * *
534553 CCATCACACCTTCGGGTAGGTTGTTTTCACGTG-ATTTC
195 CCATAAGACCTTCGGGTAGGATGTTTTCACATGTATTTC
* * * * *
534591 AAAAAATGAGAAATGTGTCTCATTTGAATATGAAATTTGGAATTTTTGAAAAGTATGAAAGGTTT
1 AAAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTT
** * * * **
534656 CTTACCTAGTAAACTATTTTAAAAATTGGAAAGTCCATT-GGGCCATGAATAAGACTTTCGAGCA
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC-TTCGGGCCATCAGTAATTCTTTCGAGCA
* ** * * * * * *
534720 TGAT-CTTAATTTTTTTGGGTCATCTATAAGTCTTTCGAGTAAGATGATAAGACC-TTCAGGCCA
130 TGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTTGA-GCCA
* * * * * ***
534783 TCAAAAAGTCCTTTGGGTAGGATGTTTTCACATATGGCTC
194 TCCATAAGACCTTCGGGTAGGATGTTTTCACATGTATTTC
* * * * *
534823 AAAAAATGACAAATGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGTAGAGTAAGAAAGG-TT
1 AAAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTT
* * * * *
534887 CTTACATAGTAAACTATTTCCAAAATTGGTAAGCCCTTCGGGCAATTAGTAA-GCTTTTCGAGCA
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAATTC-TTTCGAGCA
* ** * * * * * *
534951 TGATGTTTAAATCCTTCATGTCATATGCAAGCTTTTCGAGCAAGATGATAAGTCATTCGGGCCAT
130 TGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTTGAGCCAT
*
535016 CTATAAGACCTTCGGGTAGGATGTTTT--CATGTGATTTC
195 CCATAAGACCTTCGGGTAGGATGTTTTCACATGT-ATTTC
* * * *
535054 AAAAAATGAG-AAAGATTTCTCATTTAAATAT-AGAATTTGAAAATTTTGTAAAGTCAGTAAGGT
1 AAAAAATGAGAAAAG-TTTCTCATTTAAATATGA-AATTTGAAATTTTTGAAAAGTAAGAAAGGT
* * ** *
535117 TTCTTACCTAGTAAACTATTTCCAAATTTGGTAGGTTATTCGGGCCATCAGTAAGT-TTTCGAGC
64 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAATTCTTTCGAGC
* * * *
535181 ATGATGTTTAAATCCTTCGGGCCATCTGTAAGCCTTTCAAACAAGATGATAAGTCCTTTGAGCCA
129 ATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTTGAGCCA
* * ** * *
535246 TCCATAAGAACTTCAGACAGGATGTTTTCACATGTCTTTT
194 TCCATAAGACCTTCGGGTAGGATGTTTTCACATGTATTTC
* * * * *
535286 GAAAAATGAGAAAAGTTTCTCATTTAAATTTGAAAATTAAAAGTTTTGAAAAGTAAGAAA-GTTT
1 AAAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTT
* * * *
535350 TTTACCTAGTAAACTATTTCCAAAATTGCTAAGTCCTTCGGGCCATC-GATAATTATGTCGAGCA
66 CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAG-TAATTCTTTCGAGCA
** * ** *
535414 TGATGAGTAAATCCTTCGGGTCATCTATAAATCTTTCGATCAAGATGATAAGTCCTTTGAGC
130 TGATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTTGAGC
535476 AAGACGTTTT
Statistics
Matches: 2635, Mismatches: 482, Indels: 152
0.81 0.15 0.05
Matches are distributed among these distances:
222 4 0.00
223 162 0.06
224 23 0.01
225 8 0.00
226 2 0.00
227 1 0.00
229 3 0.00
230 294 0.11
231 642 0.24
232 1199 0.46
233 291 0.11
234 6 0.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (233 bp):
AAAAAATGAGAAAAGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTT
CTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAATTCTTTCGAGCAT
GATGCTTAAATCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTTGAGCCATC
CATAAGACCTTCGGGTAGGATGTTTTCACATGTATTTC
Found at i:537376 original size:233 final size:231
Alignment explanation
Indices: 536746--538012 Score: 1334
Period size: 233 Copynumber: 5.5 Consensus size: 231
536736 TTGTAAATAT
* * *
536746 TAAAAAATGAGAAAGGTTTCTCATTTAAACATGAAATTTGAAATTTCTGAAAAGTAAGAAAAGTT
1 TAAAAAATGAGAAAGGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTT
* * **
536811 TCTTACCTAGTAAACTATTTCAAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTATTTCAAGCA
66 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTTGAGCA
* ** * *
536876 TCATTTTTAAATCCTTCAGGTCATCTGTAAGCCTTTCAGGCAAGATGATAAGTCCTTCGGGCCAT
131 TGATGCTTAAATCCTTCAGGTCATCTGTAAGCTTTTGA-GCAAGATGATAAGTCCTTCGGGCCAT
* * *
536941 CCATAAGACCTTTGGGCAGGATAGTTTT-ACATGACTC
195 CCATAAGACCTTTGGGTAAGAT-GTTTTCACATGTCTC
* *
536978 TAAAAAATGAGAAATGTTTCTTATTT-AA-AT---A--TGAAA--TTTGAAAAGTAAGGAAAGGT
1 TAAAAAATGAGAAAGGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAA-GAAAGGT
* * * * *
537034 TTCTTACCTCGTAAACTATTTCCAAAATTAGCAAGTCCTTCGGGCCATCAGTAAGTATTTTGATC
65 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTTGAGC
* * * **
537099 ATGATGCTTAAAT-TTTCCAGGTCATTTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCAAGCC
130 ATGATGCTTAAATCCTT-CAGGTCATCTGTAAG-CTTTTGAGCAAGATGATAAGTCCTTCGGGCC
* * *
537163 ATCCATAAGACCTTTGGGCAATATGTTTTCACACGTCTC
193 ATCCATAAGACCTTTGGGTAAGATGTTTTCACATGTCTC
* * * * * *
537202 TAGAAAAATGAGAAAGGTTTCCCATTTAAATATGATATTTGTAATTTTTGAAAAGTATGATATGT
1 TA-AAAAATGAGAAAGGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGT
* * * * *
537267 TTCTTATCTAGTAAACTATTTCCAAAATTGGTAAGCCCTTCCGGCCATTAGTAAATCTTTTGAGC
65 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTTGAGC
* * * * *
537332 ATGATACTTAAATCCTTCGGGTCATCTGTAAGCATTTTGAGCAAGATGATAGGTCATTCGTGCCA
130 ATGATGCTTAAATCCTTCAGGTCATCTGTAAGC-TTTTGAGCAAGATGATAAGTCCTTCGGGCCA
* * * *
537397 TCCATAAGA-CTTCGGGT-AGAATATTTTCACGTGATTTC
194 TCCATAAGACCTTTGGGTAAG-ATGTTTTCACATG-TCTC
* * * * *
537435 -AAAAAACGAGGAATGTTTCTTATTTAAATATGAAATTT-AAAATTTTGAAAAGTAAGAAAGGTT
1 TAAAAAATGAGAAAGGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTT
* *
537498 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTTGGGCCATCTGTAAGTCTTTTGAGCA
66 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTTGAGCA
** ** * *
537563 TGATGCTTAAATTTTTTGGGTCAT-TGTAAGCCTTTTGAGTAAGATGATAAGACCTTCGGGGCCA
131 TGATGCTTAAATCCTTCAGGTCATCTGTAAG-CTTTTGAGCAAGATGATAAGTCCTTC-GGGCCA
* * *
537627 TCCAAAAGACCTTCT-GGTAGGATGTTTTAACATGTCTC
194 TCCATAAGACCTT-TGGGTAAGATGTTTTCACATGTCTC
* * * *
537665 TCGAAAAATGAGAAAGGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGTAAAGCAAGAAAGGT
1 T-AAAAAATGAGAAAGGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGT
* * * * * *
537730 TTCTTACCTAGTAAACCATTTCAAAAATTGGTAAG-CCATTTGGGCCATTAGTAAGTCTTTCGAT
65 TTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCC-TTCGGGCCATCAGTAAGTCTTTTGAG
* * *
537794 CACGATGTTTAAATCTGCTT--GGTCATCT-TAAGTCTTTTG-GCAAAATGATAAGTCCTTCGGG
129 CATGATGCTTAAATC--CTTCAGGTCATCTGTAAG-CTTTTGAGCAAGATGATAAGTCCTTCGGG
* * * *
537855 CC-TCTATAAGACC-TTGAGTAGGATGTTTTCACGTGAT-TC
191 CCATCCATAAGACCTTTGGGTAAGATGTTTTCACATG-TCTC
* * * * * * *
537894 -AAAAAAT-AG-AAGATTTCTCATTTAAATCTAAAATTTGAAATTTTTGTAAAGTCAGATAGATT
1 TAAAAAATGAGAAAGGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTT
* *
537956 T-TTA-CTAGTAAACTATTTCCAAATTTGGTAAGTCCTTCGGGCCATCAGTAAGCCTTT
66 TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTT
538013 CGACCAGATG
Statistics
Matches: 869, Mismatches: 133, Indels: 75
0.81 0.12 0.07
Matches are distributed among these distances:
223 62 0.07
224 146 0.17
225 78 0.09
226 4 0.00
227 9 0.01
228 1 0.00
229 46 0.05
230 128 0.15
231 55 0.06
232 97 0.11
233 227 0.26
234 14 0.02
235 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (231 bp):
TAAAAAATGAGAAAGGTTTCTCATTTAAATATGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTT
TCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGGGCCATCAGTAAGTCTTTTGAGCA
TGATGCTTAAATCCTTCAGGTCATCTGTAAGCTTTTGAGCAAGATGATAAGTCCTTCGGGCCATC
CATAAGACCTTTGGGTAAGATGTTTTCACATGTCTC
Found at i:538206 original size:191 final size:182
Alignment explanation
Indices: 537838--538206 Score: 436
Period size: 191 Copynumber: 2.0 Consensus size: 182
537828 TTTTGGCAAA
* * * *
537838 ATGATAAGTCCTTCGGGCCTCTATAAGACCTTGAGTAGGATGTTTTCACGTGATTCAAAAAATAG
1 ATGATAAGTCCTTCGAGCCTCAATAAGACCTTCAGTAGGATGTTTTCACATGATTCAAAAAATAG
* * * *
537903 AAGATTTCTCATTTAAATCTAAAATTTGAAATTTTTGTAAAGTCAGATAGATTTTTACTAGTAAA
66 AAGACTTCTCATTTAAATCTAAAATTTGAAATTTTTGAAAAGTAAGAAAGATTTTTACTAGTAAA
* * *** *
537968 CTATTTCCAAATTTGGTAAGTCCTTCGGGCCATCAGTAAGCCTTTCGACCAG
131 CTATTTCCAAAATTGGTAAGTCATTCGAAACATCAATAAGCCTTTCGACCAG
*
538020 ATGATAAGTCCTTCTAGCCATCAATAAGACCTTTCAGGTAGGATGTTTTCACATGATTTCAATAA
1 ATGATAAGTCCTTCGAGCC-TCAATAAGACC-TTCA-GTAGGATGTTTTCACATGA-TTCAA-AA
* * *
538085 AA-AGAAGAAAAGCTTCTC-TTTAAATCTGAAATTTGAATTTTTTGAAAAGTAAGAAAGGTTTCT
61 AATAGAAG---A-CTTCTCATTTAAATCTAAAATTTGAAATTTTTGAAAAGTAAGAAAGATTT-T
* * *
538148 TACCTAGTAAACTATTTCTAAAATTGGTATGTCATTCGAAACATCAATAAGTCTTTCGA
121 TA-CTAGTAAACTATTTCCAAAATTGGTAAGTCATTCGAAACATCAATAAGCCTTTCGA
538207 GTATAATGCT
Statistics
Matches: 155, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
182 17 0.11
183 10 0.06
184 3 0.02
185 18 0.12
186 10 0.06
187 4 0.03
189 38 0.25
190 8 0.05
191 47 0.30
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (182 bp):
ATGATAAGTCCTTCGAGCCTCAATAAGACCTTCAGTAGGATGTTTTCACATGATTCAAAAAATAG
AAGACTTCTCATTTAAATCTAAAATTTGAAATTTTTGAAAAGTAAGAAAGATTTTTACTAGTAAA
CTATTTCCAAAATTGGTAAGTCATTCGAAACATCAATAAGCCTTTCGACCAG
Found at i:538433 original size:232 final size:231
Alignment explanation
Indices: 537988--541742 Score: 3957
Period size: 232 Copynumber: 16.3 Consensus size: 231
537978 ATTTGGTAAG
* * * ** *
537988 TCCTTCGGGCCATCAGTAAGCCTTTCGA-CCAGATGATAAGTCCTTCTAGCCATCAATAAGACCT
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACC-
* * * * *
538052 TTCAGGTAGGATGTTTTCACATGATTTCAATAAAAAGAAGAAAAGCTTCTC-TTTAAATCTGAAA
65 TTCGGGTAGGATGTTTTCACGTGATTTCAA-AAAATG-AG-AAAGTTTCTCATTTAAAACTGAAA
* * *
538116 TTTGAATTTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCTAAAATTGGTATGTC
127 TTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTC
* *** * * *
538181 ATTCGAAACATCAATAAGTCTTTCGAGTATAATGCTTAAA
192 TTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
* * * * * *
538221 TCCTTTGTGTCATCCGTAAGCCTTTTGAG-ATAGATAATAAGTCCTTTGGGCCATCCATAAGACC
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCA-AGATGATAAGTCCTTCGGGCCATCCATAAGACC
* * * * *
538285 TTAGGGTATGATGTTTTCACGTTATTTCAAAAGATGAGGAAAGTTTCTCATTTAAAACTAAAATT
65 TTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGA-GAAAGTTTCTCATTTAAAACTGAAATT
* * *
538350 TGAAAGTTTT-ATAAAGTAAGAAATGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAGGTCT
129 TGAAATTTTTGA-AAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCT
* * *
538414 TTCGGGCCATCGGTAAGTCTTTCGAGCATGATACTAAAA
193 TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
* * *
538453 TCCTTCGGGTCATCTGTAAG-CTTTTGAAGCAAGATGATAAGTCCTTCAGGCAATCCATAAGACC
1 TCCTTCGGGTCATCTGTAAGCCTTTCG-AGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACC
* * *
538517 TTCGGGTATGATGTTTTCACGTGATTTTAAAAGATGAGGAAAGTTTCTCATTTAAAACT-ATAAT
65 TTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGA-GAAAGTTTCTCATTTAAAACTGA-AAT
* *
538581 TTTAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTCCAAAATTGGTAAGTCT
128 TTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCT
* * * * * *
538646 CTCGGACCATGACTAAGTCTTTCGAACATAATGCTTAAA
193 TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
* * * * * * * * * * *
538685 TCTTTTGGGT--T-TTTAAGCCTTTCGTGAAAGAGGATAAGTCATTCGAGACATCTATAAGTCCT
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCT
*
538747 TCGGGTAGGATGTTTTCACACGT-CTCTT-AAAAAATGAGAAAGATTTCTCATTTTAAAA-TGAA
66 TCGGGTAGGATGTTTT--CACGTGAT-TTCAAAAAATGAGAAAG-TTTCTCA-TTTAAAACTGAA
* * ** ** * *
538809 ATTTGAAAATTTTGATAAGTAAGAAAGGTTTCTTACAAAGTAAACTATTTTCTGAAATCGATAAG
126 ATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTA-TTTCCAAAATTGGTAAG
* * * *
538874 CCCTTCGGGCCATTAGTAAGTCTTTCGAGCATGGTGCTTAAA
190 TCTTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
* * * ** * ** *
538916 TCCTTCGGGTTATCAGTATGCCTTTATAGCAAGATGATAAGACCTTCTAGCCATCCAAAAGACCT
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCT
* * * **
538981 TCGGGCAGGATGTTTTCACATG-TCTCTCAAAAACTGAGAAAACTTCTCATTTAAATA-TGAAAT
66 TCGGGTAGGATGTTTTCACGTGAT-T-TCAAAAAATGAGAAAGTTTCTCATTTAAA-ACTGAAAT
* * * *
539044 TTGAAATTTTTAAAAAGTAAGATATGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGCCT
128 TTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCT
* * *
539109 TTCAGGCCATTAGTAAGTCTTTTGAGCATGATGCTTAAA
193 TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
* * *
539148 TCCTTCGGGTCATTTGTAAGCCTTTCGAGCAAGATGATAAGTCATTCAGGCCATCCATAAGA-CT
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCT
** * * ** * *
539212 TCAAGTAGGATATTTTCACATGATTTCAAAATGTGAGAAA-TTTTTCTATTTTAAATCTGAAATT
66 TCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGAGAAAGTTTCTC-A-TTTAAAACTGAAATT
*
539276 TGAAATTTTTGAAAAGTAAAAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCT
129 TGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGT-CT
*
539341 TT-TGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
193 TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
** * ** * *
539379 TTTTTTGGGTCATCTGTAAGCCCTTT-GTTCAAGATGATAAGACATTCGGGCCATCCA-AATGAC
1 TCCTTCGGGTCATCTGTAAG-CCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAA-GAC
* * * *
539442 CTTCGGGCATGATGTTTTCACAT-ATCTCTCAAAAAATGAGAAAGGTTTCTCATTTAAATCTGAA
64 CTTCGGGTAGGATGTTTTCACGTGAT-T-TCAAAAAATGAGAAA-GTTTCTCATTTAAAACTGAA
* * * * *
539506 ATTTGAATTTTTTGTAAACTAAGAAAGGTTTCTTACCTAGTAAACTGTTTCCAAAATTGGTAAGC
126 ATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGT
* * * * * ** *
539571 CCTTCAGGCCATTAGTAAGTCTTTCAAGAACAATGTTTAAA
191 CTTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
* * * * * *
539612 TCTTTCAGGTCATCTGTAAGCCTTTCGAACTAGATGATAAGTCCTTCGGACCATCTATAAGACCT
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCT
* * * * *
539677 TTGGGTACGATGTTTTCACGTGATTTCAAAACAATGAGAAAGATTTCTTATTTAAATCTAAAATT
66 TCGGGTAGGATGTTTTCACGTGATTTCAAAA-AATGAGAAAG-TTTCTCATTTAAAACTGAAATT
* * * *
539742 TGAAATTTTTGAAAAGTCATAAAGATTTCTTACCTAGTAAACTATTTCCAAATTTGGTAAGTC-T
129 TGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTT
*
539806 TCGGGCCATCAGTAAGTCTTTCGAACATGATGCTTAAA
194 TCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
* * * *
539844 TCCTTCGGGTCATCTGTAAGCCTTTCTA-CAA-ATTGATAAGTCCTTTGAGCCATCAATAAGACC
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGA-TGATAAGTCCTTCGGGCCATCCATAAGACC
* * *
539907 TTCGGGTATGATGTTTTCACATGATTTC-AAAATTGAGAAAAGTTTCTCATTTAAATA-TGAAAT
65 TTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGAG-AAAGTTTCTCATTTAAA-ACTGAAAT
* * * * *
539970 TTCAAA-TTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTCTAAAATTGGGAAGTCA
128 TTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCT
* *
540034 TTCGGGCCATCAATAAGTCTTTCGAGCATGATGCTTATA
193 TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
* * * * * *
540073 TCCTTCGTGTTATCTGTAATCCTTTTGAGCAGGATGATAAGTCCTTCGAGCCATCCATAAGACCT
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCT
* * *
540138 TCGGGTATGATGTTTTCACGTGATTTCAAAAGATGAGGAAATTTTCTCATTTAAAACTGAAATTT
66 TCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGA-GAAAGTTTCTCATTTAAAACTGAAATTT
*
540203 GAAATTTTTGAAAAGTAAGAAAGGTTTCTTA-CTAGTAAACTATTTCCAAAATTGGCAAGTCTTT
130 GAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTT
* *
540267 CGGGCCATCAGTATGTCTTTCGAGCATGATACTTAAA
195 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
* * * * * * *
540304 TCTTTCGGGTCATCTATAAGCATTTCGAGCAAGATGATAAG-CTTTCGGGCAATCCATGAGACCA
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCT
* * * * *
540368 TCGGGTAAGATGTTTTCACGTGATTTCAAAAGATAAGGTAAGTTTCTCATTTAAAA-TTATAATT
66 TCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGA-GAAAGTTTCTCATTTAAAACTGA-AATT
* * * * *
540432 TGAAATTTTTGAAAATTAAGAAAGTTTTCTTACCTAGCAAAATATTTCCAAAATTTGTAAGTCTT
129 TGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTT
* * * *
540497 TCGGGCCATCACTAAGTCTTTCGAACATAATTCTTAAA
194 TCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
** * * * * * *
540535 T-CTTCCAGT--TTTTTAAGCCTTTCGAGAAAGAGGATAAG-CCATTTGGGCCATCTATAAGACC
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCC-TTCGGGCCATCCATAAGACC
* * *
540596 TTCGGGTAGGATGGTTTT-ACATG-TCTCTCGAAAAATGAGAAAGGTTTCTCATTTTAATA-TGA
65 TTCGGGTAGGAT-GTTTTCACGTGAT-T-TCAAAAAATGAGAAA-GTTTCTCA-TTTAAAACTGA
* *
540658 AATTTGAAAATTTTGAAAAGTAAGAAAGGTTTC-TACATAGTAAACTATTTCCAAAATTGGTAAG
125 AATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAG
* * * * *
540722 CCCTTCGGGCCATTAATAAGTCTTTCGAGCATGATGGTTAAA
190 TCTTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
* * * *
540764 TCCTTCGGGTCATCTGTAAACTTTTCGAGCAAGATTATAAGTCTTTCGGGCCATCCATCAA-ACC
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCAT-AAGACC
* * * *
540828 TTCGGGTAAGATGTTTTCACGTAATTTCAAAAAATGAGAATGGTTTCTCATTTGAATA-TGAAAT
65 TTCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGAGAA-AGTTTCTCATTT-AAAACTGAAA-
* * * * * *
540892 TTTGAAA-TTTTGAAAATTATGAAATGTTTCTTACCTTGTAAACTATTTTCC-AAATTGCTACGT
127 TTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTA-TTTCCAAAATTGGTAAGT
* * * * **
540955 CCTTT-GGGCCATCAATAAGACTTTTGAACATGATAATTAAA
191 -CTTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
** * * * * *
540996 TTTTTTGGGTCATCTATAAGCCTTTCGAGCAAGATGATAAGACCATCGAGCCATCCA-AATGACC
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAA-GACC
* * * *
541060 TTCAGGCAGGATGTTTTCACTTG-TCTCTCAAAAAATGAGAAATGTTTCTCATTTAAATCTGAAA
65 TTCGGGTAGGATGTTTTCACGTGAT-T-TCAAAAAATGAGAAA-GTTTCTCATTTAAAACTGAAA
* * *
541124 TTTGAAATTTTTGTAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTTGTAAGCC
127 TTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTC
* * * * *
541189 CTTCGGGGCCATTAGTAAGTCTTTTGAGCATGGTGTTTAAA
192 TTTC-GGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
** * ** *
541230 TCCTTCAAGTAATCTGTAAGTGTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCT
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCT
* * * *
541295 TTGGGTAGGATGTTTTCACTTGATTTCAAAAAATGAGAAAGATTTCTCATTTAAATCTAAAATTT
66 TCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGAGAAAG-TTTCTCATTTAAAACTGAAATTT
* * * *
541360 GAAAATTTTGAAAAGTCAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAATTTGGTAAGTCCTT
130 GAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTT
*
541425 CGGGCCATCAGTAAGTCTTTCGAGCAAGATGCTTAAA
195 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
* * * * * * * * * *
541462 TCCTTCAGGTCAT-TGTAAACCTTTCGAACAA-TTGATATGTCCTTTGTGCCATCAATAACACTT
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCT
** * *
541525 TCAAGTAGGATGTTTTCACATGACTTC-AAAAATGAGAAAAGTTTCTCATTTAAATA-T-AAA-T
66 TCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGAG-AAAGTTTCTCATTTAAA-ACTGAAATT
* * * *
541586 TG-AATTTCTTG-AAA-T--GTAAGGTTTTTTACCTAGTAAACTATTTCTAAAATTGGTAAGTCA
129 TGAAATTT-TTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCT
* * * *
541646 TTCGTGCCATCAATAAGTCTTTTGAGCATGATGTTTAAA
193 TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
* * * * *
541685 TCCTTCGTGTCATCTGTAAGCATTTTGAGCTAGATGATAAGTCCTTCGGGCAATCCAT
1 TCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCAT
541743 TGAAATTTAA
Statistics
Matches: 2955, Mismatches: 476, Indels: 190
0.82 0.13 0.05
Matches are distributed among these distances:
223 85 0.03
224 13 0.00
225 20 0.01
226 7 0.00
227 6 0.00
228 79 0.03
229 264 0.09
230 369 0.12
231 580 0.20
232 787 0.27
233 543 0.18
234 194 0.07
235 8 0.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (231 bp):
TCCTTCGGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCT
TCGGGTAGGATGTTTTCACGTGATTTCAAAAAATGAGAAAGTTTCTCATTTAAAACTGAAATTTG
AAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCTTTC
GGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
Found at i:542457 original size:231 final size:228
Alignment explanation
Indices: 541743--543224 Score: 1327
Period size: 231 Copynumber: 6.5 Consensus size: 228
541733 GGCAATCCAT
* * * *
541743 TGAAATTTAAAATTTTTTAAAAGTAAGAAAGGCTTCTTACCTAGTATACTATTTCCAAAATTGGT
1 TGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
* * * * * *
541808 AAATCTTTTGGGCCATCAGTAAGTCTTTGGAGCATGATACTTAAATCC-TTGAGGTCATATGTAA
66 AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTG-GGTCAT-TTTAA
* * * * * ** * *
541872 ACGTTTCGCGCAATATGATAAGTTCTTCA-AGTAATCCATAAG-CCTTCGGGTATGATGTTTTCA
129 GCCTTTCGAGCAAGATGATAAG-TCTT-ATGGCCATCCATAAGACCTTCAGGTAGGATGTTTTCA
*
541935 CGTGATTTCAAAAGATGAGGAAAGTTTCTCATTTAAAA
192 CGTGATTTCAAAA-ATGAGGAAAGTTTCTCATTTAATA
* * * *
541973 CTGTAATTTAAAAATTTTGAAAAGTAAAAAAGGTTTCTTACCTAGTAAGA-TATTTCCAAAATTG
1 -TGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAA-ACTATTTCCAAAATTG
* * ** * * * * * * *
542037 G-GAGTCTTTCACGCCATCACTAAGTCTTTCGAACATAATGCTTAAACCCTTAGAGT-TTTTTAA
64 GTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATTTTAA
* * * ** * * * *
542100 G-CTTTAGAGAAAGAGGATAAGTCATTCGGGCCA-CCATAAGCCCTTCGGGAATGATGTTTTCAC
129 GCCTTTCGAGCAAGATGATAAGTC-TTATGGCCATCCATAAGACCTTCAGGTAGGATGTTTTCAC
* * * *
542163 ATGTCTCTTGAGAAATGA-GAAAGGTTTCTCATTTTAATA
193 GTG-AT-TTCAAAAATGAGGAAA-GTTTCTCA-TTTAATA
* * *
542202 TGAAATTTGAAAATTTTAAAAAGTAAGAAAGGTTTCTTACATAGTAAACTATTTCCAAAATTGGT
1 TGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
* * * *
542267 AAGCCCTTCGAGCCATGAGTAAGTCTTTCGAGCATGATGTTTAAATCCTTTGGGTCATCTTTAAG
66 AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCAT-TTTAAG
* * *
542332 CCTTTCGAACAAGATAATAAGTCTATATGGCCATCCATCAGACCTTCAGGTAGGATGTTTTCACG
130 CCTTTCGAGCAAGATGATAAGTCT-TATGGCCATCCATAAGACCTTCAGGTAGGATGTTTTCACG
* *
542397 TGATTTCAAAAATTA-GAAAGGTTTCTCAATTGAATA
194 TGATTTCAAAAATGAGGAAA-GTTTCTC-ATTTAATA
* * *
542433 TGAAATTTGGAATTTTTGAAAAGTATGAAAGGTTTCTTACATAGTAAACTATTTCCAAAATTGGT
1 TGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
* * * * * * *** *
542498 AAGTCCTTCAGGCCATTAGTAAGTCTTTCAAGTATGATACTTATATCCTTCCAGTC-TTTGAAG-
66 AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATTTTAAGC
* * * * * * * * *
542561 CTTTCGAGCAAGATAATAAGTCCTTAAGGCCATTCATCAGGCTTTTAGGTTGGATGTTTTCATGT
131 CTTTCGAGCAAGATGATAAGT-CTTATGGCCATCCATAAGACCTTCAGGTAGGATGTTTTCACGT
* *
542626 GTTTTCAAAAAATGA-GAAAGGTTTCTCCTTTGAATA
195 GATTTC-AAAAATGAGGAAA-GTTTCTCATTT-AATA
* * * * * * *
542662 TGAAATTTGGAATTTTTTAAATGTATGAAAGGTTTCTTACCTAGTAAACTATTACCAAAATTTGA
1 TGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
* ** * *
542727 AAGTCCTTCGGGCCATCAGTTAGTCTTTTAAGCATGATGCTTAAATCCTTTAGGTTATTTTTAAG
66 AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCA-TTTTAAG
* * ** * * **
542792 CATTTTGAGCAAGATGATAAGTCCTTCGGGCTATCCATAAGACCTTCAAGTAGGATAATTTCACG
130 CCTTTCGAGCAAGATGATAAGT-CTTATGGCCATCCATAAGACCTTCAGGTAGGATGTTTTCACG
* *
542857 TGATTTCCAAAGATGAGGAAAGTTTTTCATTTAA-A
194 TGATTT-CAAAAATGAGGAAAGTTTCTCATTTAATA
* * * * *
542892 CTGAAATTTGAAAATTTTGAAAAGTAAGAAAGGCTTCTTACCAAATAAACTATTTCCAGAATTGG
1 -TGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGG
* * * * *
542957 TAAGTCATTCGGGCAATCAGTAAGTCTTTCAAGCACGATGCTTAAATCCTTCGGGTCATTTGTAA
65 TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATTT-TAA
* * * * **
543022 GACTTTAGAGCAAGATGATAAGTCATT-CGGACCATCCATAAGACATTTTGGGTAGGATGTTTTC
129 GCCTTTCGAGCAAGATGATAAGTC-TTATGG-CCATCCATAAGAC-CTTCAGGTAGGATGTTTTC
* * *
543086 -CTATGATTTCAAAAGATGAGGAAAGTTTATCA--T-CTA
191 AC-GTGATTTCAAAA-ATGAGGAAAGTTTCTCATTTAATA
* * * * * *
543122 --AAA-CTAAAATATTTAAAAAGTAAGAAAGGTTTCTTACCTAGT-AATTGTTTCCAAAATTGGT
1 TGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
* * *
543183 AAGTCCTTTGGGCCATCAATAAGACTTTCGAGCATGATGCTT
66 AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTT
543225 GATGTGATTA
Statistics
Matches: 1023, Mismatches: 195, Indels: 72
0.79 0.15 0.06
Matches are distributed among these distances:
225 51 0.05
226 40 0.04
227 49 0.05
228 135 0.13
229 188 0.18
230 50 0.05
231 348 0.34
232 130 0.13
233 32 0.03
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (228 bp):
TGAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATTTTAAGC
CTTTCGAGCAAGATGATAAGTCTTATGGCCATCCATAAGACCTTCAGGTAGGATGTTTTCACGTG
ATTTCAAAAATGAGGAAAGTTTCTCATTTAATA
Found at i:542709 original size:460 final size:456
Alignment explanation
Indices: 541743--543224 Score: 1451
Period size: 460 Copynumber: 3.2 Consensus size: 456
541733 GGCAATCCAT
* * *
541743 TGAAATTTAAAATTTTTTAAAAGTAAGAAAGGCTTCTTACCTAGTATACTATTTCCAAAATTGGT
1 TGAAATTTGAAATTTTTTAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
* * * * * *
541808 AAATCTTTTGGGCCATCAGTAAGTCTTTGGAGCATGATACTTAAATCC-TTGAGGTCATATGTAA
66 AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTG-GGTCATATTTAA
* * * * * * * *
541872 ACGTTTCGCGCAATATGATAAGTTCTTCAAGTAATCCATAAG-CCTTCGGGTATGATGTTTTCAC
130 GCATTTCGAGCAAGATGATAAG-TCTT-AGGCAATCCATAAGACCTTCAGGTAGGATGTTTTCAC
* * *
541936 GTGATTTCAAAAGATGAGGAAAGTTTCTCATTTAAAACTGTAATTTAAAAATTTTGAAAAGTAAA
193 GTGATTTCAAAA-ATGAGGAAAGTTTCTCATTT-AAACTGAAATTTGAAAATTTTGAAAAGTAAG
* * * * *
542001 AAAGGTTTCTTACCTAGTAAGA-TATTTCCAAAATTGG-GAGTCTTTCACGCCATCACTAAGTCT
256 AAAGGTTTCTTACATAGTAA-ACTATTTCCAAAATTGGTAAGTCATTCAGGCCATCAGTAAGTCT
* * * * * * * **
542064 TTCGAA-CATAATGCTTAAACCCTTAGAGTTTTTTAAGCTTTAGAGAAAGAGGATAAGTCATTCG
320 TTC-AAGCATGATGCTTAAATCCTTCGAGTCTTTGAAGCTTTAGAGCAAGATGATAAGTCATTAA
* * *
542128 GGCCACCATAAGCCCTTCGGGAATGATGTTTTCACATGTCTCTTGAGAAATGAGAAAGGTTTCTC
384 GGCCACCATAAGCCCTTCAGGAATGATGTTTT-ACATGTCTCTTAAAAAATGAGAAAGGTTTCTC
*
542193 ATTTTAATA
448 ATTTGAATA
* * *
542202 TGAAATTTGAAAATTTTAAAAAGTAAGAAAGGTTTCTTACATAGTAAACTATTTCCAAAATTGGT
1 TGAAATTTGAAATTTTTTAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
* * * * *
542267 AAGCCCTTCGAGCCATGAGTAAGTCTTTCGAGCATGATGTTTAAATCCTTTGGGTCATCTTTAAG
66 AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATATTTAAG
* * * * *
542332 CCTTTCGAACAAGATAATAAGTCTATATGGCCATCCATCAGACCTTCAGGTAGGATGTTTTCACG
131 CATTTCGAGCAAGATGATAAGTCT-TA-GGCAATCCATAAGACCTTCAGGTAGGATGTTTTCACG
* * * * *
542397 TGATTTCAAAAATTA-GAAAGGTTTCTCAATTGAATA-TGAAATTTGGAATTTTTGAAAAGTATG
194 TGATTTCAAAAATGAGGAAA-GTTTCTC-ATTTAA-ACTGAAATTTGAAAATTTTGAAAAGTAAG
* *
542460 AAAGGTTTCTTACATAGTAAACTATTTCCAAAATTGGTAAGTCCTTCAGGCCATTAGTAAGTCTT
256 AAAGGTTTCTTACATAGTAAACTATTTCCAAAATTGGTAAGTCATTCAGGCCATCAGTAAGTCTT
* * * * * * *
542525 TCAAGTATGATACTTATATCCTTCCAGTCTTTGAAGCTTTCGAGCAAGATAATAAGTCCTTAAGG
321 TCAAGCATGATGCTTAAATCCTTCGAGTCTTTGAAGCTTTAGAGCAAGATGATAAGTCATTAAGG
* * * * * * * *
542590 CCATTCATCAGGCTTTTAGG-TTGGATGTTTT-CATGTGTTTTCAAAAAATGAGAAAGGTTTCTC
386 CCA-CCATAAGCCCTTCAGGAAT-GATGTTTTACATGTCTCTT-AAAAAATGAGAAAGGTTTCTC
*
542653 CTTTGAATA
448 ATTTGAATA
* * * * * *
542662 TGAAATTTGGAATTTTTTAAATGTATGAAAGGTTTCTTACCTAGTAAACTATTACCAAAATTTGA
1 TGAAATTTGAAATTTTTTAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
* ** * * *
542727 AAGTCCTTCGGGCCATCAGTTAGTCTTTTAAGCATGATGCTTAAATCCTTTAGGTTATTTTTAAG
66 AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATATTTAAG
* * * * **
542792 CATTTTGAGCAAGATGATAAGTCCTTCGGGCTATCCATAAGACCTTCAAGTAGGATAATTTCACG
131 CATTTCGAGCAAGATGATAAGT-CTT-AGGCAATCCATAAGACCTTCAGGTAGGATGTTTTCACG
* *
542857 TGATTTCCAAAGATGAGGAAAGTTTTTCATTTAAACTGAAATTTGAAAATTTTGAAAAGTAAGAA
194 TGATTT-CAAAAATGAGGAAAGTTTCTCATTTAAACTGAAATTTGAAAATTTTGAAAAGTAAGAA
* * * * *
542922 AGGCTTCTTACCA-AATAAACTATTTCCAGAATTGGTAAGTCATTCGGGCAATCAGTAAGTCTTT
258 AGGTTTCTTA-CATAGTAAACTATTTCCAAAATTGGTAAGTCATTCAGGCCATCAGTAAGTCTTT
* * *
542986 CAAGCACGATGCTTAAATCCTTCGGGTCATTTGTAAGACTTTAGAGCAAGATGATAAGTCATT-C
322 CAAGCATGATGCTTAAATCCTTCGAGTC-TTTG-AAG-CTTTAGAGCAAGATGATAAGTCATTAA
** ** * * * * *
543050 GGACCATCCATAAGACATTTTGGGTAGGATGTTTTCCTATGAT-T-TCAAAAGATGAGGAAA-GT
384 GG-CCA-CCATAAG-CCCTTCAGGAATGATGTTTTAC-ATG-TCTCTTAAAAAATGA-GAAAGGT
* *
543112 TTATCA--T--CTA
443 TTCTCATTTGAATA
* * * * * *
543122 --AAA-CTAAAATATTTAAAAAGTAAGAAAGGTTTCTTACCTAGT-AATTGTTTCCAAAATTGGT
1 TGAAATTTGAAATTTTTTAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
* * *
543183 AAGTCCTTTGGGCCATCAATAAGACTTTCGAGCATGATGCTT
66 AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTT
543225 GATGTGATTA
Statistics
Matches: 839, Mismatches: 155, Indels: 61
0.80 0.15 0.06
Matches are distributed among these distances:
456 50 0.06
457 32 0.04
458 12 0.01
459 212 0.25
460 414 0.49
461 39 0.05
462 10 0.01
463 31 0.04
464 28 0.03
465 6 0.01
466 4 0.00
467 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (456 bp):
TGAAATTTGAAATTTTTTAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGT
AAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATATTTAAG
CATTTCGAGCAAGATGATAAGTCTTAGGCAATCCATAAGACCTTCAGGTAGGATGTTTTCACGTG
ATTTCAAAAATGAGGAAAGTTTCTCATTTAAACTGAAATTTGAAAATTTTGAAAAGTAAGAAAGG
TTTCTTACATAGTAAACTATTTCCAAAATTGGTAAGTCATTCAGGCCATCAGTAAGTCTTTCAAG
CATGATGCTTAAATCCTTCGAGTCTTTGAAGCTTTAGAGCAAGATGATAAGTCATTAAGGCCACC
ATAAGCCCTTCAGGAATGATGTTTTACATGTCTCTTAAAAAATGAGAAAGGTTTCTCATTTGAAT
A
Found at i:544780 original size:19 final size:19
Alignment explanation
Indices: 544756--544794 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
544746 TATCCTTTCT
544756 TTATTTCATATCATT-CTTA
1 TTATTTC-TATCATTACTTA
*
544775 TTATTTCTTTCATTACTTA
1 TTATTTCTATCATTACTTA
544794 T
1 T
544795 ATTATTATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATTTCTATCATTACTTA
Found at i:545387 original size:231 final size:230
Alignment explanation
Indices: 545085--545588 Score: 654
Period size: 231 Copynumber: 2.2 Consensus size: 230
545075 CGTTTCTCAT
* *
545085 TTAAATCTAAAATTTGAAATTTTTGTAAAGTAAGAAAGGTTTCTTACATAGTAAACTTTTTCCAA
1 TTAAATCTAAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACATAGTAAACTATTTCCAA
* * * * *
545150 AATTGGTAAG-CCATTCGGGTCAT-GGTAAGTCTTTCGAGCATGATGTTTAAATCTTTCAGGTCA
66 AATTGGTAAGTCC-TTCGGGCCATCAGCAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCA
* * * * *
545213 TTTATAAGCCTTTTGAGCAAGATGATAAGTCATTCAGGACATCTATAAGACCATCAGGTAGGATG
130 TCTAT-AGCCTTTCGACCAAGATGATAAGTC-TTCAAGACATCAATAAGACCATCAGGTAGGATG
* *
545278 TTTTCACGTGATTTCAAAAAACAAAAAATATTTCACAA
193 TTATCACATGATTTCAAAAAACAAAAAATATTTCACAA
* * **
545316 TTAAATCTAAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTTGTAAACTATTTCTGA
1 TTAAATCTAAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACATAGTAAACTATTTCCAA
*
545381 AATTGGTAAGTCCTTCGGGCCATCAGCAAGTCTTTCGAGCATGATGCTTAAATCCTTCTGGTCAT
66 AATTGGTAAGTCCTTCGGGCCATCAGCAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCAT
* * * * *
545446 CTGTAGCCTTTCGACCAATATGATAAGTCTTCAAGCCATCAATATGACCTTCAGGTAGGATGTTA
131 CTATAGCCTTTCGACCAAGATGATAAGTCTTCAAGACATCAATAAGACCATCAGGTAGGATGTTA
* ** * * * *
545511 TCGCATGATTTCAAAAAATGAGAAATGTTTCTCAT
196 TCACATGATTTCAAAAAACAAAAAATATTTCACAA
* * *
545546 TTAAATCTAAATTTTG-ATTTTTTGAAATGTAAGAAAGGTTTCT
1 TTAAATCTAAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCT
545589 CATTTAAATC
Statistics
Matches: 237, Mismatches: 34, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
229 25 0.11
230 72 0.30
231 100 0.42
232 40 0.17
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (230 bp):
TTAAATCTAAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACATAGTAAACTATTTCCAA
AATTGGTAAGTCCTTCGGGCCATCAGCAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCAT
CTATAGCCTTTCGACCAAGATGATAAGTCTTCAAGACATCAATAAGACCATCAGGTAGGATGTTA
TCACATGATTTCAAAAAACAAAAAATATTTCACAA
Found at i:545925 original size:394 final size:395
Alignment explanation
Indices: 545221--545982 Score: 1045
Period size: 394 Copynumber: 1.9 Consensus size: 395
545211 CATTTATAAG
*
545221 CCTTTTGAGCAAGATGATAAGTCATTCAGGACATCTATAAGACCATCAGGTAGGATGTTTTCACG
1 CCTTTTGAGCAAGATGATAAGTCATTCAGGACATCCATAAGACCATCAGGTAGGATGTTTTCACG
*
545286 TGATTTCAAAAAACAAAAAATATTTCACAATTAAATCTAAAATTTGAAATTTTTGAAAAGTAAGA
66 TGATTTCAAAAAACAAAAAATATTTCACAATTAAAACTAAAA-TTGAAATTTTTGAAAAGTAAGA
* *
545351 AAGGTTTCTTACCTTGTAAACTATTTCTGAAATTGGTAAGTCCTTCGGGCCATCAGCAAGTCTTT
130 AAGGTTTCTTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCTTCGGGCCATCAGCAAGTCTTT
* * * *
545416 CGAGCATGATGCTTAAATCCTTCTGGTCATCTGTAGCCTTTCGACCAATATGATAAGTCTTCAAG
195 CGAGCATAATGCTTAAATCCTTCAGGTCATCTATAGCCTTTCGACCAAGATGATAAGTCTTCAAG
* * *
545481 CCATCAATATGACCTTCAGGTAGGATGTTATCGCATGATTTCAAAAAATGAGAAATGTTTCTCAT
260 CCATCAATAAGACCTTCAGGTAGGATGTTATCACATGATTTCAAAAAATGAGAAATATTTCT-AT
* *
545546 TTAAATCTAAATTTTG-ATTTTTTG-AAATGTAAGAAAGGTTTCTCATTTAAATCCCTCGGGTCA
324 TTAAATCTAAAATTTGAAATTTTTGAAAAT-TAAGAAAGGTTTCTCATTTAAATCCCTCGGGTCA
545609 TCTATACC
388 TCTATACC
* * * * * *
545617 CCTTTTGAGTAAGATGATAAGTCATTCGGGGA-ATCCATAAGACCTTCGGGTATGATGTTTTCAT
1 CCTTTTGAGCAAGATGATAAGTCATTC-AGGACATCCATAAGACCATCAGGTAGGATGTTTTCAC
* ** ** * * *
545681 GTGATTTTAAAAGATGAGGAAAT-TTTCTCATTTAAAACTGAAA-TGAAATTTTTGAAAAGTAAG
65 GTGATTTCAAAA-AACAAAAAATATTTCACAATTAAAACTAAAATTGAAATTTTTGAAAAGTAAG
* * * *
545744 AAAGGTTTCTTACCTAGTAAACTCTTT-TCAAAATTGGTAAGTCCTTGGGGCCATCAGTAATTCT
129 AAAGGTTTCTTACCTAGTAAACTATTTCT-AAAATTGGTAAGTCCTTCGGGCCATCAGCAAGTCT
*
545808 TTCGAGCATAATGCTTAAATCCTTCAGGTCATCTATAAGCC-TT-GAGCAAGATGATAAGTCCTT
193 TTCGAGCATAATGCTTAAATCCTTCAGGTCATCTAT-AGCCTTTCGACCAAGATGATAAGT-CTT
** * * * **
545871 CGGGCCATCTATAAGACCTTCAGGTCGGATGTTTTCATGTGATTTCAAAAAATGAGAAATATTTC
256 CAAGCCATCAATAAGACCTTCAGGTAGGATGTTATCACATGATTTCAAAAAATGAGAAATATTTC
545936 TATTTAAATCTAAAATTTGAAATTTTTGAAAATTAAGAAAGGTTTCT
321 TATTTAAATCTAAAATTTGAAATTTTTGAAAATTAAGAAAGGTTTCT
545983 TACAGAGTAA
Statistics
Matches: 320, Mismatches: 39, Indels: 16
0.85 0.10 0.04
Matches are distributed among these distances:
393 32 0.10
394 191 0.60
395 8 0.03
396 80 0.25
397 9 0.03
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (395 bp):
CCTTTTGAGCAAGATGATAAGTCATTCAGGACATCCATAAGACCATCAGGTAGGATGTTTTCACG
TGATTTCAAAAAACAAAAAATATTTCACAATTAAAACTAAAATTGAAATTTTTGAAAAGTAAGAA
AGGTTTCTTACCTAGTAAACTATTTCTAAAATTGGTAAGTCCTTCGGGCCATCAGCAAGTCTTTC
GAGCATAATGCTTAAATCCTTCAGGTCATCTATAGCCTTTCGACCAAGATGATAAGTCTTCAAGC
CATCAATAAGACCTTCAGGTAGGATGTTATCACATGATTTCAAAAAATGAGAAATATTTCTATTT
AAATCTAAAATTTGAAATTTTTGAAAATTAAGAAAGGTTTCTCATTTAAATCCCTCGGGTCATCT
ATACC
Found at i:546009 original size:229 final size:231
Alignment explanation
Indices: 545592--546800 Score: 1195
Period size: 229 Copynumber: 5.3 Consensus size: 231
545582 GGTTTCTCAT
* * * ** * * * ** *
545592 TTAAATCCCTCGGGTCATCTATACCCCTTTTGAGTAAGATGATAAGTCATTCGGGGAATCCATAA
1 TTAAATCCTTCAGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAA
* * * *
545657 GACCTTCGGGTATGATGTTTTCATGTGATTTTAAAAGATGAGGAAAT-TTTCTCATTTAAAACTG
66 GACCTTCAGGTATGATGTTTTCAT-TGATTTCAAAAAATGA-GAAATATTTCTCATTTAAATCTG
* *
545721 AAA--TGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTCTTTTCAAAATTGGTAA
129 AAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAA
* * *
545784 GTCCTTGGGGCCATCAGTAATTCTTTCGAGCATAATGC
194 GTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGC
*
545822 TTAAATCCTTCAGGTCATCTATAAGCC-TT-GAGCAAGATGATAAGTCCTTCGGGCCATCTATAA
1 TTAAATCCTTCAGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAA
** *
545885 GACCTTCAGGTCGGATGTTTTCATGTGATTTCAAAAAATGAGAAATATTTCT-ATTTAAATCTAA
66 GACCTTCAGGTATGATGTTTTCAT-TGATTTCAAAAAATGAGAAATATTTCTCATTTAAATCTGA
* ** *
545949 AATTTGAAATTTTTGAAAATTAAGAAAGGTTTCTTACAGAGTAAACTATTTCCGAAATTGGTAAG
130 AATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAG
* * *
546014 TCCTTCGGGTCACCTGTAAGTCTTTCGAGCATGATGC
195 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGC
* ** * * * * *
546051 TTAAATCCTTCGGGTCATCTGTAAGCCTTTTTACCAATATGATAAGTTCTTCGAGCCATCAATAA
1 TTAAATCCTTCAGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAA
* * *
546116 AACCTTCAGGTATGATTTTTTC-TCATGATTTCAAAAAATGAGAAA-AGCTTCTCATTTAAATCT
66 GACCTTCAGGTATGATGTTTTCAT--TGATTTCAAAAAATGAGAAATA-TTTCTCATTTAAATCT
* * * *
546179 GAAATTTGAATTTTTTGAAAAGTAAAAAAGGTTTTTTACCTAGTAAACTATTTCTAAAATTGGTA
128 GAAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTA
** ** *
546244 AGTCCTTCAAGCCATCAACAAGTCTTTCAAGCATGATGC
193 AGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGC
* * * *
546283 TTAAATCCTTCAAGTCATTTGTAAGCC-TTCAAGCAAGATGATAAGTCCTTCGGACCATCTATAA
1 TTAAATCCTTCAGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAA
** * * * * * *
546347 GACCTTTGGGTATGATGTTTTCA-CGATTT-AAAAAGACGAGGAATCTTTTTCATTTAAAACTGA
66 GACCTTCAGGTATGATGTTTTCATTGATTTCAAAAA-ATGAGAAATATTTCTCATTTAAATCTGA
* *
546410 AATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAAATATTTCCAAAACTT-GCAA
130 AATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAA-TTGGTAA
* * * * * * *
546474 GTCTTTCGGGCCATCACTGAGTCATAC-A-AATGATGT
194 GTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGC
** * * * * * *
546510 TTAAATCCTTTGGGTTATCTTTAAGCCTTTCGAG-AAGAGGATAAGTCATTCGGTCCATCCATAA
1 TTAAATCCTTCAGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAA
** * * ** * * * ** * *
546574 GACCTTTGGGCAGGATGTTTTCACATTTCTCTCAGAAAATGAAAAAGGTGTCTCATTTAAATATG
66 GACCTTCAGGTATGATGTTTT--CATTGATTTCAAAAAATGAGAAATATTTCTCATTTAAATCTG
* *
546639 AAATTTGAAA---TTGAAAAGTAAGAAAGG-TTC-TACATAGTAAACTATTT-CAAAAATGGTAA
129 AAATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAA
* * * * *
546698 GCCCTTCGGGCCATTAGTAAGT-GTTCGAGCACGATGT
194 GTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGC
** * * * * *
546735 TTTGATCCTTCAGGTCATCTGTAAGTCTTTCGA-CATGATGCTTAAATCCTTCGGGTCATCTATA
1 TTAAATCCTTCAGGTCATCTGTAAGCCTTTCGAGCAAGATG-ATAAGTCCTTCGGGCCATCTATA
546799 AG
65 AG
546801 CCATTCGACC
Statistics
Matches: 805, Mismatches: 152, Indels: 48
0.80 0.15 0.05
Matches are distributed among these distances:
223 3 0.00
224 26 0.03
225 51 0.06
226 22 0.03
227 106 0.13
228 81 0.10
229 215 0.27
230 59 0.07
231 121 0.15
232 121 0.15
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Consensus pattern (231 bp):
TTAAATCCTTCAGGTCATCTGTAAGCCTTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAA
GACCTTCAGGTATGATGTTTTCATTGATTTCAAAAAATGAGAAATATTTCTCATTTAAATCTGAA
ATTTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGT
CCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGC
Found at i:546759 original size:41 final size:41
Alignment explanation
Indices: 546714--546809 Score: 95
Period size: 41 Copynumber: 2.3 Consensus size: 41
546704 CGGGCCATTA
* **
546714 GTAAGT-GTTCGAGCACGATGTTTTGATCCTTCAGGTCATCT
1 GTAAGTCGTTCGA-CACGATGCTTAAATCCTTCAGGTCATCT
* * *
546755 GTAAGTCTTTCGACATGATGCTTAAATCCTTCGGGTCATCT
1 GTAAGTCGTTCGACACGATGCTTAAATCCTTCAGGTCATCT
* * *
546796 ATAAGCCATTCGAC
1 GTAAGTCGTTCGAC
546810 CAATGATAAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
41 40 0.89
42 5 0.11
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (41 bp):
GTAAGTCGTTCGACACGATGCTTAAATCCTTCAGGTCATCT
Found at i:547625 original size:31 final size:31
Alignment explanation
Indices: 547585--547680 Score: 115
Period size: 31 Copynumber: 3.1 Consensus size: 31
547575 GTCCCGAAAG
* *
547585 ACCTATCCATATATTCCGAAGAACATAGGTA
1 ACCTGTCCATATGTTCCGAAGAACATAGGTA
*
547616 ACCTGTCCATATGTCCCGAATG-ACATAGGTA
1 ACCTGTCCATATGTTCCGAA-GAACATAGGTA
* *
547647 AACTGTCCATATGTTTCGAA-AGACATAGGTA
1 ACCTGTCCATATGTTCCGAAGA-ACATAGGTA
547678 ACC
1 ACC
547681 CTTGACTCTT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
31 54 0.98
32 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (31 bp):
ACCTGTCCATATGTTCCGAAGAACATAGGTA
Found at i:551949 original size:31 final size:31
Alignment explanation
Indices: 551914--551984 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
551904 TCTGAAGAAT
* *
551914 ATAGGTAACCTGTCCATATGTCCCGAAGGAC
1 ATAGGTAACCTGTCCATATGTCCCAAAAGAC
* * * *
551945 ATAGGTAAACTGTTCGTATGTCTCAAAAGAC
1 ATAGGTAACCTGTCCATATGTCCCAAAAGAC
551976 ATAGGTAAC
1 ATAGGTAAC
551985 ACTCGACTCT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (31 bp):
ATAGGTAACCTGTCCATATGTCCCAAAAGAC
Found at i:554432 original size:21 final size:21
Alignment explanation
Indices: 554393--554432 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
554383 TTGTAACCTT
*
554393 AAATGATATATAAGCTTAAGG
1 AAATGATATATAAGATTAAGG
* *
554414 AAATGTTATATAGGATTAA
1 AAATGATATATAAGATTAA
554433 ACTATGAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.17, T:0.33
Consensus pattern (21 bp):
AAATGATATATAAGATTAAGG
Found at i:554808 original size:94 final size:91
Alignment explanation
Indices: 554657--554841 Score: 248
Period size: 92 Copynumber: 2.0 Consensus size: 91
554647 CGATACCGAC
* * *
554657 GGTAGTATCGATACCATGGTAAGGGTATCGATATCAATCATCGAATCTAAAATTGGTATCGATAT
1 GGTAATATCGATACCATGGTAAGGGTATCAATATCAATCATCGAACCTAAAATTGGTATCGATAT
* *
554722 CGGAAGGGGGTATCGGTACCATAGTAT
66 AGGAA-GGGATATCGGTACCATAGTAT
554749 GGTAATATCGATACCATGGTAAGGGTATCAATA-CTAGGCA-CATCGAACCTAAAATTGGTATCG
1 GGTAATATCGATACCATGGTAAGGGTATCAATATC-A---ATCATCGAACCTAAAATTGGTATCG
* *
554812 ATATAGGAAGGGATATTGGTACCGTAGTAT
62 ATATAGGAAGGGATATCGGTACCATAGTAT
554842 AGAATTATCA
Statistics
Matches: 82, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
91 1 0.01
92 32 0.39
93 18 0.22
94 30 0.37
95 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (91 bp):
GGTAATATCGATACCATGGTAAGGGTATCAATATCAATCATCGAACCTAAAATTGGTATCGATAT
AGGAAGGGATATCGGTACCATAGTAT
Found at i:555534 original size:79 final size:79
Alignment explanation
Indices: 555273--555830 Score: 812
Period size: 79 Copynumber: 7.1 Consensus size: 79
555263 TTGGAACGAA
555273 AGCAT-AAA-AATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTG-AATG--T
1 AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTAT
555333 ATGGGTACATTGTC
66 ATGGGTACATTGTC
* * * * *
555347 AGCATAAAATAATAATGCATATAGGTACATTATTGGCATGAAAGTATGCCATAGCTAAAATGTAT
1 AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATG---
555412 ATATATGGGTACATTGTC
63 -TATATGGGTACATTGTC
* *
555430 ACCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGTCATAGCTGAAATGTAT
1 AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTAT
555495 ATGGGTACATTGTTC
66 ATGGGTACATTG-TC
*
555510 -GCATAAAAGAATAATTCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTAT
1 AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTAT
555574 ATGGGTACATTGTC
66 ATGGGTACATTGTC
*
555588 AGCATAAAA-AATAATGCATAT-GGTGCATTATTGACATG-AAGGATG-CATAGCTGAAATGTAT
1 AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTAT
*
555649 ATGGGTACATTTTC
66 ATGGGTACATTGTC
* *
555663 AGCATAAATGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTAAAATGTAT
1 AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTAT
555728 ATGGGTACATTGTC
66 ATGGGTACATTGTC
* * * * * *
555742 AGTATAAAAGAATAATGCATTTGGGTGCATTATTGGCATGAAAGGATACCATCGTTGAAATGCAT
1 AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTAT
* *
555807 ATGGGTGCATTATC
66 ATGGGTACATTGTC
*
555821 ACCATAAAAG
1 AGCATAAAAG
555831 TATATTATAT
Statistics
Matches: 436, Mismatches: 33, Indels: 25
0.88 0.07 0.05
Matches are distributed among these distances:
74 5 0.01
75 40 0.09
76 62 0.14
77 36 0.08
78 20 0.05
79 201 0.46
80 2 0.00
83 70 0.16
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (79 bp):
AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTAT
ATGGGTACATTGTC
Found at i:555684 original size:154 final size:158
Alignment explanation
Indices: 555273--555828 Score: 810
Period size: 154 Copynumber: 3.6 Consensus size: 158
555263 TTGGAACGAA
555273 AGCAT-AAA-AATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTG-AATG--T
1 AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTAT
* * * *
555333 ATGGGTACATTGTCAGCATAAAAT-AATAATGCATATAGGTACATTATTGGCATGAAAGTATGCC
66 ATGGGTACATTTTCAGCAT-AAATGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCC
555397 ATAGCTAAAATGTATATATATGGGTACATTGTC
130 ATAGCTAAAATG----TATATGGGTACATTGTC
* *
555430 ACCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGTCATAGCTGAAATGTAT
1 AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTAT
* *
555495 ATGGGTACATTGTTC-GCATAAAAGAATAATTCATATGGGTGCATTATTGGCATGAAAGGATGCC
66 ATGGGTACATT-TTCAGCATAAATGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCC
*
555559 ATAGCTGAAATGTATATGGGTACATTGTC
130 ATAGCTAAAATGTATATGGGTACATTGTC
*
555588 AGCATAAAA-AATAATGCATAT-GGTGCATTATTGACATG-AAGGATG-CATAGCTGAAATGTAT
1 AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTAT
555649 ATGGGTACATTTTCAGCATAAATGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCA
66 ATGGGTACATTTTCAGCATAAATGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCA
555714 TAGCTAAAATGTATATGGGTACATTGTC
131 TAGCTAAAATGTATATGGGTACATTGTC
* * * * * *
555742 AGTATAAAAGAATAATGCATTTGGGTGCATTATTGGCATGAAAGGATACCATCGTTGAAATGCAT
1 AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTAT
* * *
555807 ATGGGTGCATTATCACCATAAA
66 ATGGGTACATTTTCAGCATAAA
555829 AGTATATTAT
Statistics
Matches: 363, Mismatches: 24, Indels: 23
0.89 0.06 0.06
Matches are distributed among these distances:
153 3 0.01
154 110 0.30
155 18 0.05
156 32 0.09
157 22 0.06
158 60 0.17
159 46 0.13
160 4 0.01
161 3 0.01
162 63 0.17
163 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.30
Consensus pattern (158 bp):
AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTAT
ATGGGTACATTTTCAGCATAAATGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCA
TAGCTAAAATGTATATGGGTACATTGTC
Found at i:555700 original size:233 final size:237
Alignment explanation
Indices: 555273--555829 Score: 828
Period size: 233 Copynumber: 2.4 Consensus size: 237
555263 TTGGAACGAA
555273 AGCAT-AAA-AATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTG-AATG-TA
1 AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGATA
* *
555334 TGGGTACATTGTCAGCATAAAATAATAATGCATATAGGTACATTATTGGCATGAAAGTATGCCAT
66 TGGGTACATTGTCAGCATAAAATAATAATGCATATAGGTACATTATTGACATGAAAGGATGCCAT
555399 AGCTAAAATGTATATATATGGGTACATTGTCACCATAAAAGAATAATGCATATGGGTGCATTATT
131 AGCTAAAATG---ATATATGGGTACATTGTCACCATAAAAGAATAATGCATATGGGTGCATTATT
* *
555464 GGCATGAAAGGATGTCATAGCTGAAATGTATATGGGTACATTGTTC
193 GGCATGAAAGGATGCCATAGCTAAAATGTATATGGGTACATTG-TC
*
555510 -GCATAAAAGAATAATTCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTAT
1 AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATG-AT
*
555574 ATGGGTACATTGTCAGCATAAAA-AATAATGCATAT-GGTGCATTATTGACATG-AAGGATG-CA
65 ATGGGTACATTGTCAGCATAAAATAATAATGCATATAGGTACATTATTGACATGAAAGGATGCCA
* * * *
555635 TAGCTGAAATG-TATATGGGTACATTTTCAGCATAAATGAATAATGCATATGGGTGCATTATTGG
130 TAGCTAAAATGATATATGGGTACATTGTCACCATAAAAGAATAATGCATATGGGTGCATTATTGG
555699 CATGAAAGGATGCCATAGCTAAAATGTATATGGGTACATTGTC
195 CATGAAAGGATGCCATAGCTAAAATGTATATGGGTACATTGTC
* * * * *
555742 AGTATAAAAGAATAATGCATTTGGGTGCATTATTGGCATGAAAGGATACCATCGTTGAAATGCAT
1 AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATG-AT
* * *
555807 ATGGGTGCATTATCACCATAAAA
65 ATGGGTACATTGTCAGCATAAAA
555830 GTATATTATA
Statistics
Matches: 294, Mismatches: 20, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
232 2 0.01
233 166 0.56
236 4 0.01
237 15 0.05
238 52 0.18
239 19 0.06
240 12 0.04
241 24 0.08
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (237 bp):
AGCATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGATA
TGGGTACATTGTCAGCATAAAATAATAATGCATATAGGTACATTATTGACATGAAAGGATGCCAT
AGCTAAAATGATATATGGGTACATTGTCACCATAAAAGAATAATGCATATGGGTGCATTATTGGC
ATGAAAGGATGCCATAGCTAAAATGTATATGGGTACATTGTC
Found at i:555927 original size:59 final size:58
Alignment explanation
Indices: 555855--555978 Score: 180
Period size: 59 Copynumber: 2.1 Consensus size: 58
555845 TGCATTACAA
*
555855 ATATGAATTTCCGTATAGGGCACT-TCGTGTGCTAAA-ATGATAAGAAATTCATACTAAGT
1 ATATGAATTTCCGTATAGGGCACTAT-GTGTGCTAAATAT--TAAGAAAGTCATACTAAGT
*
555914 ATATGAATTTCCGTATAGGGCACTATTTGTGCTAAATATTAAGAAAGTCATACTAAGT
1 ATATGAATTTCCGTATAGGGCACTATGTGTGCTAAATATTAAGAAAGTCATACTAAGT
*
555972 GTATGAA
1 ATATGAA
555979 CTTTTGTATG
Statistics
Matches: 60, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
58 24 0.40
59 33 0.55
60 3 0.05
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (58 bp):
ATATGAATTTCCGTATAGGGCACTATGTGTGCTAAATATTAAGAAAGTCATACTAAGT
Found at i:556427 original size:81 final size:80
Alignment explanation
Indices: 556306--556508 Score: 304
Period size: 81 Copynumber: 2.5 Consensus size: 80
556296 TCAATTATGC
* * * * **
556306 CAGTTCGATGTACGGTTAAATACCGTTGAGTAAAAT-AATAATGGCTTAATTGTGCAAATTTCAT
1 CAGTTAGATGAACGGTTAAACACTGTTGAGT-AAATGAATAATGGCTTAATTGTGCAAATGGCAT
556370 AAAAGTGTAAATGATGT
65 -AAAGTGTAAATGATGT
*
556387 CAGTTAGATGAACGGTTAAACACTGTTAAGTAAATGAATAATGGCTTAATTGTGCAAATGGCATA
1 CAGTTAGATGAACGGTTAAACACTGTTGAGTAAATGAATAATGGCTTAATTGTGCAAATGGCATA
556452 AAGTGTAAATGATGT
66 AAGTGTAAATGATGT
556467 CAGTTAGATGAACGGTT-AACACTGTTGAGTAAA-GAATAATGG
1 CAGTTAGATGAACGGTTAAACACTGTTGAGTAAATGAATAATGG
556509 ACTAGCAGTG
Statistics
Matches: 113, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
78 9 0.08
79 15 0.13
80 37 0.33
81 52 0.46
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (80 bp):
CAGTTAGATGAACGGTTAAACACTGTTGAGTAAATGAATAATGGCTTAATTGTGCAAATGGCATA
AAGTGTAAATGATGT
Found at i:556535 original size:80 final size:81
Alignment explanation
Indices: 556306--556541 Score: 266
Period size: 81 Copynumber: 2.9 Consensus size: 81
556296 TCAATTATGC
* * * * * ** **
556306 CAGTTCGATGTACGGTTAAATACCGTTGAGTAAAAT-AATAATGGCTTAATTGTGCAAATTTCAT
1 CAGTTAGATGAACGGTTAAACACTGTTAAGT-AAATGAATAATGGCTTAACAGTGCAAATGACAT
556370 AAAAGTGTAAATGATGT
65 AAAAGTGTAAATGATGT
** *
556387 CAGTTAGATGAACGGTTAAACACTGTTAAGTAAATGAATAATGGCTTAATTGTGCAAATGGCAT-
1 CAGTTAGATGAACGGTTAAACACTGTTAAGTAAATGAATAATGGCTTAACAGTGCAAATGACATA
556451 AAAGTGTAAATGATGT
66 AAAGTGTAAATGATGT
* * **
556467 CAGTTAGATGAACGGTT-AACACTGTTGAGTAAA-GAATAATGGAC-TAGCAGTGCATTTGACAT
1 CAGTTAGATGAACGGTTAAACACTGTTAAGTAAATGAATAATGG-CTTAACAGTGCAAATGACAT
556529 AAAAAGTGTAAAT
65 -AAAAGTGTAAAT
556542 ATGCAAGTTA
Statistics
Matches: 137, Mismatches: 14, Indels: 9
0.86 0.09 0.06
Matches are distributed among these distances:
78 21 0.15
79 16 0.12
80 48 0.35
81 52 0.38
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.30
Consensus pattern (81 bp):
CAGTTAGATGAACGGTTAAACACTGTTAAGTAAATGAATAATGGCTTAACAGTGCAAATGACATA
AAAGTGTAAATGATGT
Found at i:556619 original size:2 final size:2
Alignment explanation
Indices: 556612--556651 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
556602 GATATGAATG
556612 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
556652 CATTAATGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:571533 original size:12 final size:10
Alignment explanation
Indices: 571470--571542 Score: 51
Period size: 10 Copynumber: 7.0 Consensus size: 10
571460 TCACCACCCC
*
571470 TCATATTATT
1 TCATATTCTT
571480 TCATATTCATT
1 TCATATTC-TT
* *
571491 GC-TA-TATT
1 TCATATTCTT
571499 TCATATTCTT
1 TCATATTCTT
*
571509 TCTTATGTCCTT
1 TCATAT-T-CTT
571521 TCCATACTTCTT
1 T-CATA-TTCTT
571533 TCATATTCTT
1 TCATATTCTT
571543 ATGAAATCAT
Statistics
Matches: 49, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
8 3 0.06
9 3 0.06
10 22 0.45
11 8 0.16
12 8 0.16
13 4 0.08
14 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.03, T:0.56
Consensus pattern (10 bp):
TCATATTCTT
Found at i:572118 original size:20 final size:20
Alignment explanation
Indices: 572093--572149 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
572083 ATTTCTCTGA
572093 AGTGCATTGATGCATTCAAC
1 AGTGCATTGATGCATTCAAC
572113 AGTGCATTGATGCATTCAAC
1 AGTGCATTGATGCATTCAAC
*
572133 AGTGCATCGATGCATTC
1 AGTGCATTGATGCATTC
572150 TTTAGCATGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (20 bp):
AGTGCATTGATGCATTCAAC
Found at i:578946 original size:22 final size:22
Alignment explanation
Indices: 578914--579037 Score: 198
Period size: 22 Copynumber: 5.7 Consensus size: 22
578904 TCGAGGGTTA
*
578914 CATAGGTCCTTCGGGACATATG
1 CATAGGCCCTTCGGGACATATG
*
578936 CATAGGCCCTTCGGGATATATG
1 CATAGGCCCTTCGGGACATATG
* *
578958 CATAGGCCATTCGAGACATATG
1 CATAGGCCCTTCGGGACATATG
578980 CATAGGCCCTTC-GGACATATG
1 CATAGGCCCTTCGGGACATATG
579001 CATAGGCCCTTCGGGACATATG
1 CATAGGCCCTTCGGGACATATG
579023 CATA-GCCCTTCGGGA
1 CATAGGCCCTTCGGGA
579038 TATAGATTTC
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
21 31 0.33
22 63 0.67
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (22 bp):
CATAGGCCCTTCGGGACATATG
Found at i:579019 original size:43 final size:43
Alignment explanation
Indices: 578914--579035 Score: 192
Period size: 43 Copynumber: 2.8 Consensus size: 43
578904 TCGAGGGTTA
* *
578914 CATAGGTCCTTCGGGACATATGCATAGGCCCTTCGGGATATATG
1 CATAGGCCCTTCGGGACATATGCATAGGCCCTTC-GGACATATG
* *
578958 CATAGGCCATTCGAGACATATGCATAGGCCCTTCGGACATATG
1 CATAGGCCCTTCGGGACATATGCATAGGCCCTTCGGACATATG
579001 CATAGGCCCTTCGGGACATATGCATA-GCCCTTCGG
1 CATAGGCCCTTCGGGACATATGCATAGGCCCTTCGG
579036 GATATAGATT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
42 9 0.12
43 32 0.44
44 31 0.43
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (43 bp):
CATAGGCCCTTCGGGACATATGCATAGGCCCTTCGGACATATG
Found at i:582642 original size:19 final size:19
Alignment explanation
Indices: 582618--582667 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
582608 ATGAAAAATG
582618 GGTATCGATACCTAAGCTT
1 GGTATCGATACCTAAGCTT
582637 GGTATCGATACCTAAGCTT
1 GGTATCGATACCTAAGCTT
582656 GGTATCGATACC
1 GGTATCGATACC
582668 ACAACTAGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (19 bp):
GGTATCGATACCTAAGCTT
Found at i:584633 original size:17 final size:19
Alignment explanation
Indices: 584602--584643 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
584592 TGTTATTTAT
584602 TTTTAATAAAATTTA-AA-
1 TTTTAATAAAATTTATAAC
* *
584619 TTTTAATATATTTTATAAC
1 TTTTAATAAAATTTATAAC
584638 TTTTAA
1 TTTTAA
584644 ATTCAATGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 13 0.62
18 2 0.10
19 6 0.29
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTAATAAAATTTATAAC
Found at i:585576 original size:27 final size:27
Alignment explanation
Indices: 585516--585577 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
585506 TTAGTACCGC
* *
585516 CATCACCACTTTGAACTTGAAACTTCA
1 CATCATCACTTTGAACTTGAAACTCCA
* * * *
585543 TAGCATCACTTTTAACTTGAAAGTCCA
1 CATCATCACTTTGAACTTGAAACTCCA
585570 CATCATCA
1 CATCATCA
585578 AGATCTTTAT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (27 bp):
CATCATCACTTTGAACTTGAAACTCCA
Found at i:595602 original size:18 final size:19
Alignment explanation
Indices: 595558--595596 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
595548 TTATGAGGTG
595558 AAAAATGAT-ATTATTGTAA
1 AAAAAT-ATAATTATTGTAA
595577 AAAAATATAATTATT-TAA
1 AAAAATATAATTATTGTAA
595595 AA
1 AA
595597 TTATATCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (19 bp):
AAAAATATAATTATTGTAA
Found at i:596272 original size:23 final size:23
Alignment explanation
Indices: 596216--596284 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
596206 CCAAACAACC
* *
596216 GAAAATATGCCATAAAAACAG-A
1 GAAAATATGTCATAAAGACAGAA
**
596238 GAAAAGCGTGTCATAAAGACAGAA
1 GAAAA-TATGTCATAAAGACAGAA
*
596262 GAAAATATGTCATAAAGGCAGAA
1 GAAAATATGTCATAAAGACAGAA
596285 TTATTAAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
22 5 0.13
23 27 0.71
24 6 0.16
ACGTcount: A:0.54, C:0.12, G:0.20, T:0.14
Consensus pattern (23 bp):
GAAAATATGTCATAAAGACAGAA
Found at i:599350 original size:37 final size:37
Alignment explanation
Indices: 599308--599611 Score: 296
Period size: 37 Copynumber: 8.1 Consensus size: 37
599298 TATATATAAA
*
599308 ATTTT-AAAACATATATAATATATAGTTTTTAAAAAC
1 ATTTTGAAAACATATATAATATATAGTTTTTAAAAAT
* * *
599344 GTTTTTAAAACATATATATAATATATAGTTTTTGAAAAT
1 ATTTTGAAAAC--ATATATAATATATAGTTTTTAAAAAT
* *
599383 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
1 ATTTTGAAAACATATATAATATATAGTTTTTAAAAAT
* * * * * *
599420 ATTTTGAAAA-TTTTTTGAA-A-ATA-TATATAATATAT
1 ATTTTGAAAACATATAT-AATATATAGTTTTTAA-AAAT
599455 AGTTTTTGAAAACATATATATAATATATAGTTTTTAGAAAAT
1 A--TTTTGAAAAC--ATATATAATATATAGTTTTTA-AAAAT
* *
599497 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
1 ATTTTGAAAACATATATAATATATAGTTTTTAAAAAT
* *
599534 ATTTTGAATATATATATAATATATAGTTTTT-AAAAT
1 ATTTTGAAAACATATATAATATATAGTTTTTAAAAAT
* *
599570 CATTTTGAAAACATATATATAATATATAATTTTTGAAAAT
1 -ATTTTGAAAAC--ATATATAATATATAGTTTTTAAAAAT
599610 AT
1 AT
599612 ATATATTATA
Statistics
Matches: 225, Mismatches: 25, Indels: 33
0.80 0.09 0.12
Matches are distributed among these distances:
34 4 0.02
35 7 0.03
36 13 0.06
37 96 0.43
38 20 0.09
39 55 0.24
40 18 0.08
41 3 0.01
42 8 0.04
43 1 0.00
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.45
Consensus pattern (37 bp):
ATTTTGAAAACATATATAATATATAGTTTTTAAAAAT
Found at i:599387 original size:11 final size:11
Alignment explanation
Indices: 599373--599443 Score: 72
Period size: 11 Copynumber: 6.1 Consensus size: 11
599363 AATATATAGT
599373 TTTTGAAAATA
1 TTTTGAAAATA
599384 TTTTGAAAATA
1 TTTTGAAAATA
*
599395 TATAT-AATATATA
1 T-TTTGAA-A-ATA
599408 GTTTTTGAAAATA
1 --TTTTGAAAATA
*
599421 TTTTGAAAATT
1 TTTTGAAAATA
599432 TTTTGAAAATA
1 TTTTGAAAATA
599443 T
1 T
599444 ATATAATATA
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
11 35 0.70
12 3 0.06
13 6 0.12
14 3 0.06
15 3 0.06
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (11 bp):
TTTTGAAAATA
Found at i:599413 original size:26 final size:26
Alignment explanation
Indices: 599384--599498 Score: 150
Period size: 28 Copynumber: 4.5 Consensus size: 26
599374 TTTGAAAATA
599384 TTTTGAAAATATATATAATATATAGT
1 TTTTGAAAATATATATAATATATAGT
*
599410 TTTTGAAAATAT-TTTGAA-A-AT--T
1 TTTTGAAAATATATAT-AATATATAGT
599432 TTTTGAAAATATATATAATATATAGT
1 TTTTGAAAATATATATAATATATAGT
599458 TTTTGAAAACATATATATAATATATAGT
1 TTTTG-AAA-ATATATATAATATATAGT
599486 TTTTAGAAAATAT
1 TTTT-GAAAATAT
599499 TTTGAAAATA
Statistics
Matches: 78, Mismatches: 2, Indels: 17
0.80 0.02 0.18
Matches are distributed among these distances:
22 15 0.19
23 3 0.04
24 4 0.05
25 3 0.04
26 20 0.26
27 7 0.09
28 25 0.32
29 1 0.01
ACGTcount: A:0.45, C:0.01, G:0.08, T:0.46
Consensus pattern (26 bp):
TTTTGAAAATATATATAATATATAGT
Found at i:599522 original size:114 final size:111
Alignment explanation
Indices: 599308--599611 Score: 389
Period size: 114 Copynumber: 2.7 Consensus size: 111
599298 TATATATAAA
* * * *
599308 ATTTT-AAAACATATATAATATATAGTTTTTAAAAACGTTTTT-AAAACATATATATAATATATA
1 ATTTTGAAAATATATAAAATATATAG--TATATAAA-GTTTTTGAAAACATATATATAATATATA
599371 GTTTTTGAAAATATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
63 GTTTTTGAAAATATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
* * *
599420 ATTTTGAAAATTTTTTGAAAATATATA-TAATATATAGTTTTTGAAAACATATATATAATATATA
1 ATTTTGAAAA-TATAT-AAAATATATAGT-ATATAAAGTTTTTGAAAACATATATATAATATATA
599484 GTTTTTAGAAAATATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
63 GTTTTT-GAAAATATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
* * * * * *
599534 ATTTTGAATATATATATAATATATAGTTTTTAAAATCATTTTGAAAACATATATATAATATATAA
1 ATTTTGAAAATATATAAAATATATAGTATATAAAGT--TTTTGAAAACATATATATAATATATAG
599599 TTTTTGAAAATAT
64 TTTTTGAAAATAT
599612 ATATATTATA
Statistics
Matches: 167, Mismatches: 16, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
112 26 0.16
113 47 0.28
114 85 0.51
115 9 0.05
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.45
Consensus pattern (111 bp):
ATTTTGAAAATATATAAAATATATAGTATATAAAGTTTTTGAAAACATATATATAATATATAGTT
TTTGAAAATATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
Found at i:599528 original size:103 final size:102
Alignment explanation
Indices: 599421--599634 Score: 272
Period size: 103 Copynumber: 2.1 Consensus size: 102
599411 TTTGAAAATA
* * *
599421 TTTTGAAAATTTTTTGAAAATATATATAATATATAGTTTTTGAAAA-CATATAT-ATAATATATA
1 TTTTGAAAATATTTTGAAAATATATATAATATATAGTTTTT-AAAATCAT-TATGAAAACATATA
**
599484 GT-TTTTAGAAAATATTTTGAAAATATATATAATATATAGT
64 -TATAATAGAAAAT-TTTTGAAAATATATATAATATATAGT
* *
599524 TTTTGAAAATATTTTGAATATATATATAATATATAGTTTTTAAAATCATTTTGAAAACATATATA
1 TTTTGAAAATATTTTGAAAATATATATAATATATAGTTTTTAAAATCATTATGAAAACATATATA
* * *
599589 TAATATATAATTTTTGAAAATATATATATTATATAGT
66 TAATAGAAAATTTTTGAAAATATATATAATATATAGT
*
599626 TTTTAAAAA
1 TTTTGAAAA
599635 AATATTTATA
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
102 40 0.41
103 57 0.59
ACGTcount: A:0.46, C:0.01, G:0.07, T:0.46
Consensus pattern (102 bp):
TTTTGAAAATATTTTGAAAATATATATAATATATAGTTTTTAAAATCATTATGAAAACATATATA
TAATAGAAAATTTTTGAAAATATATATAATATATAGT
Found at i:599531 original size:26 final size:25
Alignment explanation
Indices: 599498--599653 Score: 83
Period size: 26 Copynumber: 6.0 Consensus size: 25
599488 TTAGAAAATA
599498 TTTTGAAAATATATATAATATATAGT
1 TTTTGAAAATATATATAATATATA-T
*
599524 TTTTGAAAATAT-TTTGAATATATA-
1 TTTTGAAAATATATAT-AATATATAT
* * *
599548 -TAT-AATATATAGTTTTTAA-A-ATCA-
1 TTTTGAA-A-ATA-TATATAATATAT-AT
599572 TTTTGAAAACATATATATAATATATAAT
1 TTTTG-AAA-ATATATATAATATAT-AT
*
599600 TTTTGAAAATATATATATTATATAGT
1 TTTTGAAAATATATATAATATATA-T
* * *
599626 TTTTAAAAAAATATTTATATATTATAT
1 TTTTGAAAATATATATA-ATA-TATAT
599653 T
1 T
599654 ATGGTATAAT
Statistics
Matches: 103, Mismatches: 12, Indels: 29
0.72 0.08 0.20
Matches are distributed among these distances:
22 2 0.02
23 5 0.05
24 5 0.05
25 13 0.13
26 57 0.55
27 12 0.12
28 9 0.09
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.48
Consensus pattern (25 bp):
TTTTGAAAATATATATAATATATAT
Found at i:599603 original size:28 final size:27
Alignment explanation
Indices: 599572--599647 Score: 86
Period size: 26 Copynumber: 2.9 Consensus size: 27
599562 TTTAAAATCA
599572 TTTTGAAAACATATATATAATATATAAT
1 TTTTGAAAA-ATATATATAATATATAAT
* *
599600 TTTTG-AAAATATATATATTATATAGT
1 TTTTGAAAAATATATATAATATATAAT
* *
599626 TTTT-AAAAAAATAT-TTATATAT
1 TTTTGAAAAATATATATAATATAT
599648 TATATTATGG
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
25 6 0.14
26 28 0.67
27 3 0.07
28 5 0.12
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (27 bp):
TTTTGAAAAATATATATAATATATAAT
Found at i:599623 original size:76 final size:75
Alignment explanation
Indices: 599318--599611 Score: 310
Period size: 76 Copynumber: 3.9 Consensus size: 75
599308 ATTTTAAAAC
* ** * *
599318 ATATATAATATATAGTTTTTAAAAACGTTTTTAAAACATATATATAATATATAGTTTTTGAAAAT
1 ATATATAATATATAGTTTTTGAAAATATTTTGAAAA-ATATATATAATATATAATTTTTGAAAAT
* *
599383 ATTTTGAAAAT
65 ATTATGAATAT
* * * * * * * *
599394 ATATATAATATATAGTTTTTGAAAATATTTTGAAAATTTTTTGAAAATATAT-ATAATAT-ATAG
1 ATATATAATATATAGTTTTTGAAAATATTTTGAAAAATATAT-ATAATATATAAT-TTTTGAAAA
* *
599457 T-TTTTGAAAACAT
64 TATTATG--AATAT
*
599470 ATATATAATATATAGTTTTTAGAAAATATTTTG-AAAATATATATAATATATAGTTTTTGAAAAT
1 ATATATAATATATAGTTTTT-GAAAATATTTTGAAAAATATATATAATATATAATTTTTGAAAAT
*
599534 ATTTTGAATAT
65 ATTATGAATAT
599545 ATATATAATATATAGTTTTT-AAAATCATTTTGAAAACATATATATAATATATAATTTTTGAAAA
1 ATATATAATATATAGTTTTTGAAAAT-ATTTTGAAAA-ATATATATAATATATAATTTTTGAAAA
599609 TAT
64 TAT
599612 ATATATTATA
Statistics
Matches: 182, Mismatches: 25, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
73 5 0.03
74 11 0.06
75 44 0.24
76 105 0.58
77 17 0.09
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.46
Consensus pattern (75 bp):
ATATATAATATATAGTTTTTGAAAATATTTTGAAAAATATATATAATATATAATTTTTGAAAATA
TTATGAATAT
Found at i:601512 original size:24 final size:24
Alignment explanation
Indices: 601482--601544 Score: 73
Period size: 20 Copynumber: 2.8 Consensus size: 24
601472 ACTATCCAAG
601482 GAGTATCGATACTACTATGCGCAGT
1 GAGTATCGATACTACTATGC-CAGT
*
601507 -AGTATCGATAC--C-GT-CCAGT
1 GAGTATCGATACTACTATGCCAGT
601526 GAGTATCGATACTACTATG
1 GAGTATCGATACTACTATG
601545 TAAAGTAGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 11
0.70 0.05 0.25
Matches are distributed among these distances:
19 4 0.13
20 12 0.39
21 1 0.03
22 2 0.06
23 1 0.03
24 11 0.35
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
GAGTATCGATACTACTATGCCAGT
Found at i:601530 original size:44 final size:44
Alignment explanation
Indices: 601464--601562 Score: 128
Period size: 44 Copynumber: 2.2 Consensus size: 44
601454 CAACTCAACG
* **
601464 GTATCGATACTATCCAAGGAGTATCGATACTACTATGCGCAGTA
1 GTATCGATACCATCCAAGGAGTATCGATACTACTATGCAAAGTA
* *
601508 GTATCGATACCGTCC-AGTGAGTATCGATACTACTATGTAAAGTA
1 GTATCGATACCATCCAAG-GAGTATCGATACTACTATGCAAAGTA
*
601552 GTATCAATACC
1 GTATCGATACC
601563 TAACATGGTA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
43 2 0.04
44 46 0.96
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (44 bp):
GTATCGATACCATCCAAGGAGTATCGATACTACTATGCAAAGTA
Found at i:601707 original size:18 final size:19
Alignment explanation
Indices: 601662--601707 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
601652 TACTACTATA
*
601662 TGTAAGGGTATTGATACTG
1 TGTAAGGGTATCGATACTG
601681 TGT-AGGGTATCGATACTG
1 TGTAAGGGTATCGATACTG
*
601699 -GTAAAGGTA
1 TGTAAGGGTA
601708 GTATCAATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 2 0.08
18 19 0.79
19 3 0.12
ACGTcount: A:0.28, C:0.07, G:0.33, T:0.33
Consensus pattern (19 bp):
TGTAAGGGTATCGATACTG
Found at i:601876 original size:20 final size:20
Alignment explanation
Indices: 601835--601876 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
601825 GTAAAATTTG
*
601835 ATATTTGAATACTTGGAGTA
1 ATATTTGAATACTTGGAATA
*
601855 ATATTTGTAATA-TTTGAATA
1 ATATTTG-AATACTTGGAATA
601875 AT
1 AT
601877 TTATTCGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.45
Consensus pattern (20 bp):
ATATTTGAATACTTGGAATA
Found at i:602325 original size:15 final size:16
Alignment explanation
Indices: 602307--602340 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
602297 CAAACAATCA
602307 AAAC-ACAAAATATCC
1 AAACAACAAAATATCC
*
602322 AAACAACCAAATATCC
1 AAACAACAAAATATCC
602338 AAA
1 AAA
602341 TCTGTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.62, C:0.26, G:0.00, T:0.12
Consensus pattern (16 bp):
AAACAACAAAATATCC
Found at i:604164 original size:21 final size:21
Alignment explanation
Indices: 604098--604170 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
604088 CGATACATAT
* *
604098 GTATCAATACCCATTCAAGTA
1 GTATCAATACTCATTCAAGCA
* * *
604119 GTATTAGTACT-ATATGAA-CA
1 GTATCAATACTCAT-TCAAGCA
*
604139 ATATCAATACTCATTCAAGCA
1 GTATCAATACTCATTCAAGCA
604160 GTATCAATACT
1 GTATCAATACT
604171 ATGCTAGTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
20 14 0.36
21 25 0.64
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (21 bp):
GTATCAATACTCATTCAAGCA
Found at i:604184 original size:20 final size:20
Alignment explanation
Indices: 604140--604226 Score: 68
Period size: 20 Copynumber: 4.2 Consensus size: 20
604130 ATATGAACAA
* * *
604140 TATCAATACTCATTCAAGCAG
1 TATCAATACT-ATGCTAGTAG
604161 TATCAATACTATGCTAGTAG
1 TATCAATACTATGCTAGTAG
* *
604181 TATCGATACCTA-GCAAGAGTAG
1 TATCAATA-CTATGC--TAGTAG
**
604203 TATCGGTACTATGCTAGTAG
1 TATCAATACTATGCTAGTAG
604223 TATC
1 TATC
604227 GGTACTGGGT
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
20 25 0.45
21 16 0.29
22 14 0.25
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (20 bp):
TATCAATACTATGCTAGTAG
Found at i:604227 original size:20 final size:20
Alignment explanation
Indices: 604167--604232 Score: 80
Period size: 20 Copynumber: 3.2 Consensus size: 20
604157 GCAGTATCAA
*
604167 TACTATGCTAGTAGTATCGA
1 TACTATGCTAGTAGTATCGG
*
604187 TACCTA-GCAAGAGTAGTATCGG
1 TA-CTATGC--TAGTAGTATCGG
604209 TACTATGCTAGTAGTATCGG
1 TACTATGCTAGTAGTATCGG
604229 TACT
1 TACT
604233 GGGTGACCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 19 0.49
21 6 0.15
22 14 0.36
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.32
Consensus pattern (20 bp):
TACTATGCTAGTAGTATCGG
Found at i:619885 original size:15 final size:15
Alignment explanation
Indices: 619865--619896 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
619855 ACGAAAGAAC
*
619865 ACTAAAAAAATGAAT
1 ACTAAAAAAATAAAT
619880 ACTAAAAAAATAAAT
1 ACTAAAAAAATAAAT
619895 AC
1 AC
619897 AATTGAGTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.03, T:0.19
Consensus pattern (15 bp):
ACTAAAAAAATAAAT
Found at i:622320 original size:21 final size:21
Alignment explanation
Indices: 622296--622335 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
622286 AAGACTTTAT
622296 TTTCAAAATAT-AAAAATGATA
1 TTTCAAAAT-TGAAAAATGATA
622317 TTTCAAAATTGAAAAATGA
1 TTTCAAAATTGAAAAATGA
622336 AAATAGTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (21 bp):
TTTCAAAATTGAAAAATGATA
Found at i:626158 original size:23 final size:23
Alignment explanation
Indices: 626102--626158 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
626092 GGTGCGCTAT
626102 GTATCGATACCCCCCTTACATGG
1 GTATCGATACCCCCCTTACATGG
* * ***
626125 GTACCGA-ACCCCCTTTGTGTGG
1 GTATCGATACCCCCCTTACATGG
626147 GTATCGATACCC
1 GTATCGATACCC
626159 TCCACAGGTT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
22 17 0.63
23 10 0.37
ACGTcount: A:0.19, C:0.33, G:0.21, T:0.26
Consensus pattern (23 bp):
GTATCGATACCCCCCTTACATGG
Found at i:628480 original size:23 final size:23
Alignment explanation
Indices: 628426--628486 Score: 90
Period size: 22 Copynumber: 2.7 Consensus size: 23
628416 ATTTAACAAA
* *
628426 AAGGGGGAG-AAGTGTTAAGAGT
1 AAGGGGGAGTAATTTTTAAGAGT
628448 AA-GGGGAGTAATTTTTAAGAGT
1 AAGGGGGAGTAATTTTTAAGAGT
628470 AAGGGGGAGTAATTTTT
1 AAGGGGGAGTAATTTTT
628487 CAAAACTTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
21 6 0.17
22 15 0.43
23 14 0.40
ACGTcount: A:0.34, C:0.00, G:0.38, T:0.28
Consensus pattern (23 bp):
AAGGGGGAGTAATTTTTAAGAGT
Found at i:630937 original size:9 final size:9
Alignment explanation
Indices: 630923--630966 Score: 56
Period size: 9 Copynumber: 4.9 Consensus size: 9
630913 GATCCTACAT
630923 TTTTATTTA
1 TTTTATTTA
630932 TTTTA-TTA
1 TTTTATTTA
630940 TTTT-TCTTA
1 TTTTAT-TTA
630949 TTTTATTTA
1 TTTTATTTA
630958 TTTTTATTT
1 -TTTTATTT
630967 TTATTTAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
8 7 0.23
9 15 0.48
10 9 0.29
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTATTTA
Found at i:630944 original size:18 final size:19
Alignment explanation
Indices: 630921--630966 Score: 69
Period size: 18 Copynumber: 2.5 Consensus size: 19
630911 TTGATCCTAC
630921 ATTTTTATTTATTTTA-TT
1 ATTTTTATTTATTTTATTT
*
630939 ATTTTT-CTTATTTTATTT
1 ATTTTTATTTATTTTATTT
630957 ATTTTTATTT
1 ATTTTTATTT
630967 TTATTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 8 0.33
18 14 0.58
19 2 0.08
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (19 bp):
ATTTTTATTTATTTTATTT
Found at i:630949 original size:17 final size:18
Alignment explanation
Indices: 630929--630962 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
630919 ACATTTTTAT
630929 TTATTTTA-TTATTTTTC
1 TTATTTTATTTATTTTTC
630946 TTATTTTATTTATTTTT
1 TTATTTTATTTATTTTT
630963 ATTTTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (18 bp):
TTATTTTATTTATTTTTC
Found at i:630951 original size:21 final size:22
Alignment explanation
Indices: 630925--630983 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 22
630915 TCCTACATTT
630925 TTATTTAT-TTTATTATTT-TTC
1 TTATTTATATTTATT-TTTATTC
*
630946 TTATTT-TATTTATTTTTATTT
1 TTATTTATATTTATTTTTATTC
*
630967 TTATTTA-ATTGATTTTT
1 TTATTTATATTTATTTTT
630984 TTGTCCTCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 4 0.12
21 29 0.88
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (22 bp):
TTATTTATATTTATTTTTATTC
Found at i:637253 original size:23 final size:23
Alignment explanation
Indices: 637206--637255 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
637196 AATAACATAT
* **
637206 TAGGTAGCGCTTATATAATGTAA
1 TAGGTAGCGATTATATAATAAAA
637229 TAGGTAGCGATTATATAATAAAA
1 TAGGTAGCGATTATATAATAAAA
637252 TAGG
1 TAGG
637256 CATTTAACCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.32
Consensus pattern (23 bp):
TAGGTAGCGATTATATAATAAAA
Found at i:637315 original size:87 final size:87
Alignment explanation
Indices: 637169--637331 Score: 317
Period size: 87 Copynumber: 1.9 Consensus size: 87
637159 TATGTTATAT
637169 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
637234 AGCGATTATATAATAAAATAGG
66 AGCGATTATATAATAAAATAGG
637256 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
*
637321 AGCGCTTATAT
66 AGCGATTATAT
637332 TGACCTATTT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 75 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (87 bp):
CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
AGCGATTATATAATAAAATAGG
Found at i:637696 original size:197 final size:199
Alignment explanation
Indices: 637349--638031 Score: 797
Period size: 197 Copynumber: 3.4 Consensus size: 199
637339 TTTTATAAGT
* * *
637349 AAACCGGTATATTTATACC-GATAACATTGCAAATTTACCTATTACATTATAATTATCGGTTTCG
1 AAACCGGTATATTTATACCGGGT-ACATTGTAAATTTACCAATTACATTATAATTATCGGTTTCG
* * * * * * *
637413 ATGTTTTTTGGATCAATACAATTT--TAAATGTATCGACATTTTATGCGTTCCCCTCGTTGGGCA
65 ATGTTTTTGGGATCGATAC-TTTTAATAAATGTATCGACACTTTATGCGTGCACCTCGTTTGGCA
*
637476 TTCATTCTGGAAACAAT-TATCGACACAAACTTAA-AGAGTGTCGATACATTATTTAGACCTATT
129 TTCATTCTGGAAAAAATGTATCGACACAAA-TTAACA-AGTGTCGATACATTATTTAGACCTATT
637539 TTTTCATA
192 TTTTCATA
* * * * *
637547 AAATC-GTATATTTCTATCGGGTACATTGTAAATTTACCAATCAC-TTGTAATTATCGGTTTCGA
1 AAACCGGTATATTTATACCGGGTACATTGTAAATTTACCAATTACATTATAATTATCGGTTTCGA
*
637610 TGTTTTTGGGATCGATACTTTTAATAAATGTATCTACACTTTATGCGTGCACC-CGTTTGGCATT
66 TGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGCGTGCACCTCGTTTGGCATT
* * * * *
637674 CATTATGGAAAAAATGTATCGACACAAATTTAATAAGTGTAGATACTTTA-TGATGACCTATTTT
131 CATTCTGGAAAAAATGTATCGACACAAA-TTAACAAGTGTCGATACATTATTTA-GACCTATTTT
*
637738 CTCATA
194 TTCATA
*
637744 AAACCGGTATATTTTTACCGGGTACATTGTAAATTTA-CATATTACATTATAATTATCGGTTTCG
1 AAACCGGTATATTTATACCGGGTACATTGTAAATTTACCA-ATTACATTATAATTATCGGTTTCG
* *
637808 AT-TTTATTGGGATCGATACTTTTAATAATTGTATCGACACTTTATGTGTGCACCTCGTTTGGGC
65 ATGTTT-TTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGCGTGCACCTCGTTT-GGC
* *
637872 ATTCATTCTGGACAATAA-GTATCAACACAAATTACACAAGTGTCGATACATTATGTT-GA-CT-
128 ATTCATTCTGGA-AAAAATGTATCGACACAAATTA-ACAAGTGTCGATACATTAT-TTAGACCTA
*
637933 TGTTTTC-TA
190 TTTTTTCATA
* * * * * *
637942 ATTAACCGGTATATTTATGCCGGTTACATTGTTAATTTACCTATTACATTATAATGATTGGTTTC
1 A--AACCGGTATATTTATACCGGGTACATTGTAAATTTACCAATTACATTATAATTATCGGTTTC
638007 GATGTTTTTTGGG-TCGATACTTTTA
64 GATG-TTTTTGGGATCGATACTTTTA
638032 GAAAAAGTAT
Statistics
Matches: 417, Mismatches: 47, Indels: 40
0.83 0.09 0.08
Matches are distributed among these distances:
195 3 0.01
196 59 0.14
197 105 0.25
198 46 0.11
199 69 0.17
200 78 0.19
201 49 0.12
202 7 0.02
203 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.40
Consensus pattern (199 bp):
AAACCGGTATATTTATACCGGGTACATTGTAAATTTACCAATTACATTATAATTATCGGTTTCGA
TGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGCGTGCACCTCGTTTGGCATT
CATTCTGGAAAAAATGTATCGACACAAATTAACAAGTGTCGATACATTATTTAGACCTATTTTTT
CATA
Found at i:642444 original size:21 final size:23
Alignment explanation
Indices: 642389--642469 Score: 78
Period size: 23 Copynumber: 3.6 Consensus size: 23
642379 ACCCGACGGA
642389 TGCATCGATGCACATTCAAGGCG
1 TGCATCGATGCACATTCAAGGCG
* * *
642412 TGCATCGGTGCACCTTC-ATG-G
1 TGCATCGATGCACATTCAAGGCG
* *
642433 TGTATCGATGCACATTTAAAGG-G
1 TGCATCGATGCACA-TTCAAGGCG
642456 ATGCATCGATGCAC
1 -TGCATCGATGCAC
642470 TGTTAAGTGT
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
21 12 0.26
22 4 0.09
23 18 0.39
24 12 0.26
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (23 bp):
TGCATCGATGCACATTCAAGGCG
Found at i:646740 original size:17 final size:17
Alignment explanation
Indices: 646714--646754 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
646704 GGCAAACAAT
*
646714 GTCATTTTCCCGTCATC
1 GTCATCTTCCCGTCATC
646731 GTCATCTTCCCGTCATC
1 GTCATCTTCCCGTCATC
646748 GTCATCT
1 GTCATCT
646755 GAATCACTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.12, C:0.37, G:0.12, T:0.39
Consensus pattern (17 bp):
GTCATCTTCCCGTCATC
Found at i:647870 original size:16 final size:16
Alignment explanation
Indices: 647849--647887 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
647839 CAAAGAGAAT
647849 ATTACAAAATTGCAAA
1 ATTACAAAATTGCAAA
647865 ATTACAAAATTGCAAA
1 ATTACAAAATTGCAAA
*
647881 CTTACAA
1 ATTACAA
647888 GGAAACCCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.54, C:0.15, G:0.05, T:0.26
Consensus pattern (16 bp):
ATTACAAAATTGCAAA
Found at i:648451 original size:65 final size:64
Alignment explanation
Indices: 648310--648468 Score: 173
Period size: 65 Copynumber: 2.5 Consensus size: 64
648300 GCACTAAGAG
* * * *
648310 TGCAGCGATGCATAAAATGTATTCGATGTTTTAAAATAGCCTGAGTACATCGATGCATGGCTGG
1 TGCATCGATGCATAAAATGCATTCGATGTTTTAAAATAGCCTGAGTACATCGATGCATAGCTGA
* *
648374 TGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-A-CTCTGAGTGCATCGATGCATAG-T
1 TGCATCGATGCATAAAATGCATTCGATGTTTT-A-AAATAGC-CTGAGTACATCGATGCATAGCT
*
648436 ATA
63 -GA
*
648439 TGCATC-AGTGCATGAAATGCATTCGATGTT
1 TGCATCGA-TGCATAAAATGCATTCGATGTT
648469 CAATTTATTC
Statistics
Matches: 82, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
64 32 0.39
65 47 0.57
66 3 0.04
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (64 bp):
TGCATCGATGCATAAAATGCATTCGATGTTTTAAAATAGCCTGAGTACATCGATGCATAGCTGA
Found at i:651201 original size:18 final size:18
Alignment explanation
Indices: 651178--651213 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
651168 AATACTCAAT
651178 ACTCCAAGTATCGGCACA
1 ACTCCAAGTATCGGCACA
651196 ACTCCAAGTATCGGCACA
1 ACTCCAAGTATCGGCACA
651214 TTTATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.17, T:0.17
Consensus pattern (18 bp):
ACTCCAAGTATCGGCACA
Found at i:651987 original size:182 final size:182
Alignment explanation
Indices: 651680--652395 Score: 908
Period size: 182 Copynumber: 4.0 Consensus size: 182
651670 TATGCGTACT
* * * * *
651680 TATTAAAGTATCGACACTTTCAATATATCCGGTAG-TGCTTTACCGGTTTTGTCATTTCGAGACC
1 TATTAAAGTATCGACACTTTCAATATATCCGGTCGCT-CTATACCGATTTTGTCCTTTAGAGACC
* * *
651744 G-GTTTAGTCATATTTTTACCTGTTATATCGTTGTGGACCTATACATTGTTATAAAGTATCGACA
65 GATTTTA-TCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTGTTATAAAGTATCGACA
651808 CTTTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
129 CTTTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
* * * * *
651862 TATTAAAGTATCGACACTTTAAATATATTCGGTCGCTCTATACCGGTTTTGTCCTTTAGATACTG
1 TATTAAAGTATCGACACTTTCAATATATCCGGTCGCTCTATACCGATTTTGTCCTTTAGAGACCG
* * * * *
651927 ATTTTATCATATTTTTGCTTGTTATATCGTTATGGATCGATGCATTTTTATAAAGTATCGACACT
66 ATTTTATCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTGTTATAAAGTATCGACACT
*
651992 TTATAGGTGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATAC---
131 TTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
* * *
652041 ---T----TATCGACACTTTCAATATATCCGATCGCTCTATAACGATTTTGTCCTTTAGATACCG
1 TATTAAAGTATCGACACTTTCAATATATCCGGTCGCTCTATACCGATTTTGTCCTTTAGAGACCG
* * *
652099 GTTTTGTCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTGTTATAACA-TATTGACAC
66 ATTTTATCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTGTTATAA-AGTATCGACAC
**
652163 TTTATAGAAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
130 TTTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
* * * *
652216 TAATAAAGTATCGACACTTTCAATATATTCGGTAGCGC-CT-TACCCGATTTTGTCTTTTCGAGA
1 TATTAAAGTATCGACACTTTCAATATATCCGGT--CGCTCTATA-CCGATTTTGTCCTTTAGAGA
* * *
652279 CC-AGTTTTGTCATATTTTTACATGTTATATCGTTGTGGATCGATACATAT-TTATAAAGAATCG
63 CCGA-TTTTATCATATTTTTACCTGTTATATCGTTGTGGATCGATACAT-TGTTATAAAGTATCG
* * *
652342 ACACTTTATAGGCGCTAAAAATGCTTCTCCTTTAAATTCACAATGTGTCGATAC
126 ACACTTTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATAC
652396 ATATCCTGTA
Statistics
Matches: 467, Mismatches: 48, Indels: 37
0.85 0.09 0.07
Matches are distributed among these distances:
172 153 0.33
173 1 0.00
176 1 0.00
178 1 0.00
182 181 0.39
183 126 0.27
184 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (182 bp):
TATTAAAGTATCGACACTTTCAATATATCCGGTCGCTCTATACCGATTTTGTCCTTTAGAGACCG
ATTTTATCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTGTTATAAAGTATCGACACT
TTATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
Found at i:652164 original size:172 final size:171
Alignment explanation
Indices: 651870--652400 Score: 636
Period size: 172 Copynumber: 3.0 Consensus size: 171
651860 TATATTAAAG
* * * * * * *
651870 TATCGACACTTTAAATATATTCGGTCGCTCTATACCGGTTTTGTCCTTTAGATACTGATTTTATC
1 TATCGACACTTTCAATATATCCGATCGCTCTATACCGATTTTGTCCTTTAGATACCGGTTTTGTC
* * * * *
651935 ATATTTTTGCTTGTTATATCGTTATGGATCGATGCATTTTTATAAAGTATCGACACTTTATAGGT
66 ATATTTTTACATGTTATATCGTTGTGGATCGATACA-TTTTATAAAGTATCGACACTTTATAGGA
652000 GCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACT
130 GCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACT
*
652042 TATCGACACTTTCAATATATCCGATCGCTCTATAACGATTTTGTCCTTTAGATACCGGTTTTGTC
1 TATCGACACTTTCAATATATCCGATCGCTCTATACCGATTTTGTCCTTTAGATACCGGTTTTGTC
* * *
652107 ATATTTTTACCTGTTATATCGTTGTGGATCGATACATTGTTATAACA-TATTGACACTTTATAGA
66 ATATTTTTACATGTTATATCGTTGTGGATCGATACATT-TTATAA-AGTATCGACACTTTATAGG
652171 AGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTATAAT
129 AGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATAC------T
* * * * * *
652220 AAAGTATCGACACTTTCAATATATTCGGTAGCGC-CT-TACCCGATTTTGTCTTTTCGAGACCAG
1 ----TATCGACACTTTCAATATA-TCCG-ATCGCTCTATA-CCGATTTTGTCCTTTAGATACCGG
*
652283 TTTTGTCATATTTTTACATGTTATATCGTTGTGGATCGATACATATTTATAAAGAATCGACACTT
59 TTTTGTCATATTTTTACATGTTATATCGTTGTGGATCGATACAT-TTTATAAAGTATCGACACTT
* * * * *
652348 TATAGGCGCTAAAAATGCTTCTCCTTTAAATTCACAATGTGTCGATACA
123 TATAGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACT
652397 TATC
1 TATC
652401 CTGTAGCGTT
Statistics
Matches: 311, Mismatches: 31, Indels: 33
0.83 0.08 0.09
Matches are distributed among these distances:
171 2 0.01
172 151 0.49
173 5 0.02
178 1 0.00
182 22 0.07
183 125 0.40
184 5 0.02
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (171 bp):
TATCGACACTTTCAATATATCCGATCGCTCTATACCGATTTTGTCCTTTAGATACCGGTTTTGTC
ATATTTTTACATGTTATATCGTTGTGGATCGATACATTTTATAAAGTATCGACACTTTATAGGAG
CTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACT
Found at i:652349 original size:183 final size:182
Alignment explanation
Indices: 652042--652395 Score: 500
Period size: 183 Copynumber: 1.9 Consensus size: 182
652032 TGTCGATACT
* * *
652042 TATCGACACTTTCAATATATCCGATCGCTCTATAACGATTTTGTCCTTTAGATACCGGTTTTGTC
1 TATCGACACTTTCAATATATCCGAGCGCTCTATAACGATTTTGTCCTTTAGAGACCAGTTTTGTC
* * *
652107 ATATTTTTACCTGTTATATCGTTGTGGATCGATACATTGTTATAACATATTGACACTTTATAGAA
66 ATATTTTTACATGTTATATCGTTGTGGATCGATACATTGTTATAACAAATCGACACTTTATAGAA
* *
652172 GCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTATAATAAAG
131 GCTAAAAATGCTTCTCCTTTAAATTCACAAAGTGTCGATACTTATAATAAAG
* * * *
652224 TATCGACACTTTCAATATATTCGGTAGCGC-CT-TACCCGATTTTGTCTTTTCGAGACCAGTTTT
1 TATCGACACTTTCAATATA-TCCG-AGCGCTCTATA-ACGATTTTGTCCTTTAGAGACCAGTTTT
652287 GTCATATTTTTACATGTTATATCGTTGTGGATCGATACATAT-TTATAA-AGAATCGACACTTTA
63 GTCATATTTTTACATGTTATATCGTTGTGGATCGATACAT-TGTTATAACA-AATCGACACTTTA
** *
652350 TAGGCGCTAAAAATGCTTCTCCTTTAAATTCACAATGTGTCGATAC
126 TAGAAGCTAAAAATGCTTCTCCTTTAAATTCACAAAGTGTCGATAC
652396 ATATCCTGTA
Statistics
Matches: 152, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
182 22 0.14
183 125 0.82
184 5 0.03
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (182 bp):
TATCGACACTTTCAATATATCCGAGCGCTCTATAACGATTTTGTCCTTTAGAGACCAGTTTTGTC
ATATTTTTACATGTTATATCGTTGTGGATCGATACATTGTTATAACAAATCGACACTTTATAGAA
GCTAAAAATGCTTCTCCTTTAAATTCACAAAGTGTCGATACTTATAATAAAG
Found at i:653428 original size:35 final size:35
Alignment explanation
Indices: 653389--653460 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
653379 TAAACTAAAA
653389 AATAAGTCAATTCACCAAGTGACATGACTTATTAT
1 AATAAGTCAATTCACCAAGTGACATGACTTATTAT
* * *
653424 AATAAGTCTATTTACCAAGTGACGTGACTTATTAT
1 AATAAGTCAATTCACCAAGTGACATGACTTATTAT
653459 AA
1 AA
653461 ATAACATCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.33
Consensus pattern (35 bp):
AATAAGTCAATTCACCAAGTGACATGACTTATTAT
Found at i:658516 original size:15 final size:16
Alignment explanation
Indices: 658498--658539 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
658488 ATTTTTTGTA
658498 TTTTAATTTAAT-TAT
1 TTTTAATTTAATATAT
*
658513 TTTTAAATT-ATATAT
1 TTTTAATTTAATATAT
658528 TTTTATATTTAA
1 TTTTA-ATTTAA
658540 AATGTTGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 2 0.09
15 16 0.73
16 3 0.14
17 1 0.05
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTAATTTAATATAT
Found at i:662228 original size:16 final size:16
Alignment explanation
Indices: 662204--662252 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
662194 ATATCTGCAA
*
662204 AAAAAATTAATTAAAT
1 AAAATATTAATTAAAT
** *
662220 AAAATATTAAACAATT
1 AAAATATTAATTAAAT
662236 AAAATAATTAATTAAAT
1 AAAAT-ATTAATTAAAT
662253 TACAAAAAAA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
16 17 0.68
17 8 0.32
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAATATTAATTAAAT
Found at i:671064 original size:32 final size:32
Alignment explanation
Indices: 671028--671091 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
671018 AGCTTTTGGT
*
671028 TTTTTCATGTTGTTAAAGAGTTGAACAATGAA
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGAA
**
671060 TTTTTTGTGTTGTCAAAGAGTTGAACAATGAA
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGAA
671092 AATAGATGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.33, C:0.06, G:0.20, T:0.41
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGTTGAACAATGAA
Found at i:674071 original size:11 final size:11
Alignment explanation
Indices: 674054--674083 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
674044 AAACCCCCTA
674054 AAAATAACCCC
1 AAAATAACCCC
*
674065 GAAATAACCCC
1 AAAATAACCCC
674076 AAAATAAC
1 AAAATAAC
674084 ACAAAAATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.30, G:0.03, T:0.10
Consensus pattern (11 bp):
AAAATAACCCC
Found at i:674692 original size:3 final size:3
Alignment explanation
Indices: 674684--674744 Score: 104
Period size: 3 Copynumber: 20.0 Consensus size: 3
674674 AAAAGAAATA
674684 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
*
674730 AAT AAT AAT ATT AAT
1 AAT AAT AAT AAT AAT
674745 GAAATATCCG
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
3 52 0.95
4 3 0.05
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:675147 original size:133 final size:133
Alignment explanation
Indices: 675009--675418 Score: 574
Period size: 133 Copynumber: 3.1 Consensus size: 133
674999 TGCTATTCTG
** * * * * *
675009 GGTAGATCAGATCTGGAAACGTTGATTAACTTCATTGATCTTCAGGGAAGATTGAATCGA-GATA
1 GGTAGATCAGATAAGGAAACGTTGATTTACTTCACTGCTCTTTAGGGAAGATTGAATCAAGGA-A
* * * * ** ** *
675073 GATTT-TCTCCATTTCTTCTAAGAGAAGATCAAATCTGGAAAAAAATGGATCTGCTCCACTGCTC
65 AATTTGT-TCCATTTCTTCTCAGGGAAGATAAAAAATGGAAAAAAGGGGACCTGCTCCACTGCTC
675137 TTCAA
129 TTCAA
* * *
675142 GGTAGATTAGATAAGGAAACTTTGATTTACTTAACTGCTCTTTAGGGAAGATTGAATCAAGGAAA
1 GGTAGATCAGATAAGGAAACGTTGATTTACTTCACTGCTCTTTAGGGAAGATTGAATCAAGGAAA
675207 ATTTGTTCCATTTCTTCTCAGGGAAGATAAAAAATGGAAAAAAGGGGACCTGCTCCACTGCTCTT
66 ATTTGTTCCATTTCTTCTCAGGGAAGATAAAAAATGGAAAAAAGGGGACCTGCTCCACTGCTCTT
675272 CAA
131 CAA
* *
675275 GGTAGATTAGATAAGGAAACGTTGATTTACTTCACTGCTCTTTAGAGAAGATTGAATCAAGGAAA
1 GGTAGATCAGATAAGGAAACGTTGATTTACTTCACTGCTCTTTAGGGAAGATTGAATCAAGGAAA
675340 ATTTGTTCCATTTCTTCTCAGGGAAGATAAAAAATGG-AAAAAGGGGACCTGCTCCACTGCTCTT
66 ATTTGTTCCATTTCTTCTCAGGGAAGATAAAAAATGGAAAAAAGGGGACCTGCTCCACTGCTCTT
*
675404 CAG
131 CAA
*
675407 GGTATATCAGAT
1 GGTAGATCAGAT
675419 CTAGAAAAGA
Statistics
Matches: 250, Mismatches: 25, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
132 39 0.16
133 208 0.83
134 3 0.01
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (133 bp):
GGTAGATCAGATAAGGAAACGTTGATTTACTTCACTGCTCTTTAGGGAAGATTGAATCAAGGAAA
ATTTGTTCCATTTCTTCTCAGGGAAGATAAAAAATGGAAAAAAGGGGACCTGCTCCACTGCTCTT
CAA
Found at i:676772 original size:10 final size:9
Alignment explanation
Indices: 676756--676834 Score: 77
Period size: 9 Copynumber: 8.4 Consensus size: 9
676746 TATTTATATA
676756 TTTTATTTT
1 TTTTATTTT
676765 TCTTTATTTTAT
1 T-TTTA-TTT-T
*
676777 TTTTATTTC
1 TTTTATTTT
**
676786 TTTTCCTTT
1 TTTTATTTT
676795 TTTTATTTT
1 TTTTATTTT
*
676804 TTCTATTTT
1 TTTTATTTT
*
676813 TTCTATTTT
1 TTTTATTTT
*
676822 TTCTATTTT
1 TTTTATTTT
676831 TTTT
1 TTTT
676835 CTCTTTTTCT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
9 43 0.73
10 7 0.12
11 7 0.12
12 2 0.03
ACGTcount: A:0.10, C:0.09, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTATTTT
Found at i:676774 original size:9 final size:8
Alignment explanation
Indices: 676735--676833 Score: 69
Period size: 9 Copynumber: 11.9 Consensus size: 8
676725 TTGAACCCCC
676735 TTTTATTTA
1 TTTT-TTTA
*
676744 TTTATTTA
1 TTTTTTTA
*
676752 TATATTTTA
1 T-TTTTTTA
*
676761 TTTTTCT-
1 TTTTTTTA
*
676768 TTATTTTA
1 TTTTTTTA
676776 --TTTTTA
1 TTTTTTTA
*
676782 TTTCTTTTCC
1 TTT-TTTT-A
676792 TTTTTTTA
1 TTTTTTTA
676800 TTTTTTCTA
1 TTTTTT-TA
676809 TTTTTTCTA
1 TTTTTT-TA
676818 TTTTTTCTA
1 TTTTTT-TA
676827 TTTTTTT
1 TTTTTTT
676834 TCTCTTTTTC
Statistics
Matches: 73, Mismatches: 10, Indels: 15
0.74 0.10 0.15
Matches are distributed among these distances:
6 5 0.07
7 5 0.07
8 17 0.23
9 43 0.59
10 3 0.04
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTTTA
Found at i:676774 original size:15 final size:14
Alignment explanation
Indices: 676735--676834 Score: 64
Period size: 15 Copynumber: 7.0 Consensus size: 14
676725 TTGAACCCCC
676735 TTTTA-TTTATTTAT
1 TTTTATTTTATTT-T
676749 TTATATATTTTATTTT
1 TT-T-TATTTTATTTT
676765 TCTTTATTTTATTTT
1 T-TTTATTTTATTTT
* **
676780 TATTTCTTTTCCTTT
1 T-TTTATTTTATTTT
*
676795 TTTTATTTT-TTCTA
1 TTTTATTTTATT-TT
*
676809 TTTT-TTCTATTTT
1 TTTTATTTTATTTT
*
676822 TTCTATTTT-TTTT
1 TTTTATTTTATTTT
676835 CTCTTTTTCT
Statistics
Matches: 68, Mismatches: 11, Indels: 15
0.72 0.12 0.16
Matches are distributed among these distances:
13 12 0.18
14 19 0.28
15 24 0.35
16 5 0.07
17 8 0.12
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTATTTTATTTT
Found at i:676813 original size:18 final size:18
Alignment explanation
Indices: 676756--676873 Score: 87
Period size: 18 Copynumber: 6.2 Consensus size: 18
676746 TATTTATATA
*
676756 TTTTATTTTTCTTTATTTTAT
1 TTTTATTTTT-TCTA-TTT-T
**
676777 TTTTATTTCTTT-TCCTTT
1 TTTTATTT-TTTCTATTTT
676795 TTTTATTTTTTCTATTTT
1 TTTTATTTTTTCTATTTT
*
676813 TTCTATTTTTTCTATTTT
1 TTTTATTTTTTCTATTTT
* *
676831 TTTTCTCTTTTTCTTTTTCT
1 TTTTAT-TTTTTCTATTT-T
*
676851 TTTTCTTTCTTTC-ATTTT
1 TTTTATTT-TTTCTATTTT
676869 ATTTT
1 -TTTT
676874 TTAGGAAAAG
Statistics
Matches: 82, Mismatches: 9, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
17 3 0.04
18 35 0.43
19 21 0.26
20 12 0.15
21 9 0.11
22 2 0.02
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTATTTTTTCTATTTT
Found at i:676847 original size:6 final size:6
Alignment explanation
Indices: 676819--676858 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
676809 TTTTTTCTAT
676819 TTTTTC TATTTT- TTTTCTC TTTTTC TTTTTC TTTTTC TTT
1 TTTTTC T-TTTTC TTTT-TC TTTTTC TTTTTC TTTTTC TTT
676859 CTTTCATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 3 0.10
6 20 0.65
7 8 0.26
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTC
Found at i:677933 original size:16 final size:16
Alignment explanation
Indices: 677914--677963 Score: 91
Period size: 16 Copynumber: 3.1 Consensus size: 16
677904 TACCACTTAC
677914 TCCCCCATGCACTTCT
1 TCCCCCATGCACTTCT
677930 TCCCCCATGCACTTCT
1 TCCCCCATGCACTTCT
*
677946 TCCCCCATGCATTTCT
1 TCCCCCATGCACTTCT
677962 TC
1 TC
677964 AATGATTGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.12, C:0.48, G:0.06, T:0.34
Consensus pattern (16 bp):
TCCCCCATGCACTTCT
Found at i:679268 original size:408 final size:408
Alignment explanation
Indices: 678513--679328 Score: 1492
Period size: 408 Copynumber: 2.0 Consensus size: 408
678503 GAAATGTTGT
678513 TTGTACAATCAAAATTCATCAACTGGTGAAAGGATAATGTTCTCCATTAGGTGAGACCAAAATTT
1 TTGTACAATCAAAATTCATCAACTGGTGAAAGGATAATGTTCTCCATTAGGTGAGACCAAAATTT
*
678578 CCCCAATTCTGTTCCCCAAGGCATTTGACCACCAACAAAGTTCAATTTCCAATGTTCATTAGTAG
66 CCCCAATTCTGTGCCCCAAGGCATTTGACCACCAACAAAGTTCAATTTCCAATGTTCATTAGTAG
*
678643 AAGTAATTGTCTCTTTAGTTGAAATAACCATCAAATCTTTATCTGGGAAATCGAAGTTCATCGGT
131 AAGTAATTGTCTCTTTAGTTGAAATAACCATCAAATCTTCATCTGGGAAATCGAAGTTCATCGGT
*
678708 TCATATTCTTCAGAAGCCCTGCTTGTAATGAAATTTGCTATAACACTCCATATAAATGCTTTTGG
196 TCATATTCTTCAGAAGCCCTGCTTGCAATGAAATTTGCTATAACACTCCATATAAATGCTTTTGG
*
678773 ATCACATATTGGATGTCAAACTGAGACAATAAAATATACCAATGAGCCAATCTTCCAGATAAAGT
261 ATCACATATTGGATGTCAAACTGAGACAATAAAATATACCAACGAGCCAATCTTCCAGATAAAGT
*
678838 AGGTACACCCATAAGATATTTTAGAGGGTCAAGCCTAGAGATCAACTAAGTGGTGTGATACAACA
326 AGGTACACCCATAAGATATTTTAGAGGGTCAAGCCTAGAGATCAACCAAGTGGTGTGATACAACA
678903 TATACTACCTAAGCCATC
391 TATACTACCTAAGCCATC
*
678921 TTGTACAATCAAAATTCAATCGACTGGTGAAAGGATAATGTTCTCCATTAGGTGAGACCAAAATT
1 TTGTACAATCAAAATTC-ATCAACTGGTGAAAGGATAATGTTCTCCATTAGGTGAGACCAAAATT
* *
678986 TTCCCAATTCTGTGCCCCAAGGCATTTGAACCACCATCAAAGTTCAATTTCCAATGTTCATTAGT
65 TCCCCAATTCTGTGCCCCAAGGCATTTG-ACCACCAACAAAGTTCAATTTCCAATGTTCATTAGT
679051 AGAAGTAA-T-TCTCTTTAGTTGAAATAACCATCAAATCTTCATCTGGGAAATCGAAGTTCATCG
129 AGAAGTAATTGTCTCTTTAGTTGAAATAACCATCAAATCTTCATCTGGGAAATCGAAGTTCATCG
679114 GTTCATATTCTTCAGAAGCCCTGCTTGCAATGAAATTTGCTATAACACTCCATATAAATGCTTTT
194 GTTCATATTCTTCAGAAGCCCTGCTTGCAATGAAATTTGCTATAACACTCCATATAAATGCTTTT
* *
679179 GGATCACATATTGGATGTCAAACTGAGACAATAAAATCTGCCAACGAGCCAATCTTCCAGATAAA
259 GGATCACATATTGGATGTCAAACTGAGACAATAAAATATACCAACGAGCCAATCTTCCAGATAAA
*
679244 GTAGGTACACCCATAAGATATTTTAGATGGTCAAGCCTAGAGATCAACCAAGTGGTGTGATACAA
324 GTAGGTACACCCATAAGATATTTTAGAGGGTCAAGCCTAGAGATCAACCAAGTGGTGTGATACAA
*
679309 CATATACTGCCTAAGCCATC
389 CATATACTACCTAAGCCATC
679329 GATTAGTCCA
Statistics
Matches: 394, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
408 278 0.71
409 73 0.19
410 43 0.11
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (408 bp):
TTGTACAATCAAAATTCATCAACTGGTGAAAGGATAATGTTCTCCATTAGGTGAGACCAAAATTT
CCCCAATTCTGTGCCCCAAGGCATTTGACCACCAACAAAGTTCAATTTCCAATGTTCATTAGTAG
AAGTAATTGTCTCTTTAGTTGAAATAACCATCAAATCTTCATCTGGGAAATCGAAGTTCATCGGT
TCATATTCTTCAGAAGCCCTGCTTGCAATGAAATTTGCTATAACACTCCATATAAATGCTTTTGG
ATCACATATTGGATGTCAAACTGAGACAATAAAATATACCAACGAGCCAATCTTCCAGATAAAGT
AGGTACACCCATAAGATATTTTAGAGGGTCAAGCCTAGAGATCAACCAAGTGGTGTGATACAACA
TATACTACCTAAGCCATC
Found at i:687975 original size:21 final size:20
Alignment explanation
Indices: 687947--687986 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
687937 TATTGCAGGA
687947 ATTTATGG-TCTCAACAAAAG
1 ATTTATGGAT-TCAACAAAAG
687967 ATTTCATGGATTCAACAAAA
1 ATTT-ATGGATTCAACAAAA
687987 ACCTTGATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 13 0.72
22 1 0.06
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (20 bp):
ATTTATGGATTCAACAAAAG
Found at i:690245 original size:12 final size:12
Alignment explanation
Indices: 690230--690255 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
690220 GGAAGACTTC
690230 ATGGAAATATTT
1 ATGGAAATATTT
690242 ATGGAAATATTT
1 ATGGAAATATTT
690254 AT
1 AT
690256 CAAAAGTGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (12 bp):
ATGGAAATATTT
Found at i:716795 original size:3 final size:3
Alignment explanation
Indices: 716787--716853 Score: 89
Period size: 3 Copynumber: 21.0 Consensus size: 3
716777 AAAAGAAACA
716787 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
*
716833 AAAT AAAT AAAT AAT ATT AAT
1 -AAT -AAT -AAT AAT AAT AAT
716854 GAAATATCCG
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
3 46 0.75
4 15 0.25
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:720597 original size:15 final size:14
Alignment explanation
Indices: 720558--720601 Score: 56
Period size: 12 Copynumber: 3.2 Consensus size: 14
720548 TACGACGTAA
720558 AAAAAAACGCCGCT
1 AAAAAAACGCCGCT
*
720572 --AAAAGCGCCGCT
1 AAAAAAACGCCGCT
720584 AAAAATAACGCCGCT
1 AAAAA-AACGCCGCT
720599 AAA
1 AAA
720602 GTTTGCGGCG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
12 11 0.44
14 3 0.12
15 11 0.44
ACGTcount: A:0.48, C:0.27, G:0.16, T:0.09
Consensus pattern (14 bp):
AAAAAAACGCCGCT
Found at i:720697 original size:43 final size:43
Alignment explanation
Indices: 720624--720806 Score: 110
Period size: 43 Copynumber: 4.3 Consensus size: 43
720614 TTTGAACAAA
** * *
720624 AAAACGCCGCAATAGGT-TACAACATATAGCGGCGATTGT-TCA-
1 AAAACGCCGCAATAGGTAT-TGATATTTAGCGGCGATT-TATCAT
*
720666 ACAAACGCCGCAAAAGGTATTGATATTTAGCGGCG-TTTATCATT
1 A-AAACGCCGCAATAGGTATTGATATTTAGCGGCGATTTATCA-T
* * * * ** *
720710 AAAACACCACAATAGGTTTTGATATTTAACGGC-ATTTGGCAG
1 AAAACGCCGCAATAGGTATTGATATTTAGCGGCGATTTATCAT
* * * *
720752 ACAAACGCCGCAATA-GTCGTTGATGTTTAGCGGCGTTTTCTTCA-
1 A-AAACGCCGCAATAGGT-ATTGATATTTAGCGGCGATTT-ATCAT
720796 AAAACGCCGCA
1 AAAACGCCGCA
720807 GTAAATTTTT
Statistics
Matches: 110, Mismatches: 21, Indels: 19
0.73 0.14 0.13
Matches are distributed among these distances:
41 1 0.01
42 9 0.08
43 92 0.84
44 6 0.05
45 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (43 bp):
AAAACGCCGCAATAGGTATTGATATTTAGCGGCGATTTATCAT
Found at i:721248 original size:19 final size:21
Alignment explanation
Indices: 721225--721298 Score: 94
Period size: 21 Copynumber: 3.4 Consensus size: 21
721215 ATATATTACT
*
721225 TCTCTCTGTTCTGCCGCTGCC
1 TCTCTCTGTGCTGCCGCTGCC
*
721246 TCTCTCTGTGCTGCCGCTGCT
1 TCTCTCTGTGCTGCCGCTGCC
* *
721267 TCTCTCTCTGCTTCCGCTGCTGC
1 TCTCTCTGTGCTGCCGCTGC--C
721290 TCTCTCTGT
1 TCTCTCTGT
721299 TTCCCTTGCT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
21 37 0.82
23 8 0.18
ACGTcount: A:0.00, C:0.41, G:0.19, T:0.41
Consensus pattern (21 bp):
TCTCTCTGTGCTGCCGCTGCC
Found at i:730955 original size:41 final size:41
Alignment explanation
Indices: 730872--731027 Score: 200
Period size: 40 Copynumber: 3.9 Consensus size: 41
730862 GTTTATACAA
730872 AAAAACGCCACTATTGATTA-CACTATT-CTGGCGTTTGT-T
1 AAAAACGCCACTATTGATTATCACTATTGC-GGCGTTTGTCT
*
730911 AAAAAACGCCACTA-TGATTATCACTATTGCGGCGTTTTTCT
1 -AAAAACGCCACTATTGATTATCACTATTGCGGCGTTTGTCT
* * **
730952 AAAAACGCCATTATTGATTAACACTATTATGGCGTTTGTCT
1 AAAAACGCCACTATTGATTATCACTATTGCGGCGTTTGTCT
730993 AAAAA---CACTATTGATTATCACTATTGCGGCGTTTG
1 AAAAACGCCACTATTGATTATCACTATTGCGGCGTTTG
731028 AGGATAAACG
Statistics
Matches: 102, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
38 26 0.25
39 6 0.06
40 40 0.39
41 30 0.29
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (41 bp):
AAAAACGCCACTATTGATTATCACTATTGCGGCGTTTGTCT
Found at i:731037 original size:79 final size:78
Alignment explanation
Indices: 730872--731044 Score: 215
Period size: 79 Copynumber: 2.2 Consensus size: 78
730862 GTTTATACAA
*
730872 AAAAACGCCACTATTGATTACACTATTCTGGCGTTTGTTAAAAAACGCCACTATGATTATCACTA
1 AAAAACGCCACTATTGATTACACTATTATGGCGTTTGTTAAAAAA--CCACTATGATTATCACTA
** *
730937 TTGCGGCGTTTTTCT
64 TTGCGGCGTTTGACG
*
730952 AAAAACGCCATTATTGATTAACACTATTATGGCGTTTGTCT-AAAAA-CACTATTGATTATCACT
1 AAAAACGCCACTATTGATT-ACACTATTATGGCGTTTGT-TAAAAAACCACTA-TGATTATCACT
*
731015 ATTGCGGCGTTTGAGG
63 ATTGCGGCGTTTGACG
* *
731031 ATAAACGACACTAT
1 AAAAACGCCACTAT
731045 AGTGTAATAT
Statistics
Matches: 81, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
78 5 0.06
79 34 0.42
80 18 0.22
81 23 0.28
82 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.34
Consensus pattern (78 bp):
AAAAACGCCACTATTGATTACACTATTATGGCGTTTGTTAAAAAACCACTATGATTATCACTATT
GCGGCGTTTGACG
Found at i:731097 original size:41 final size:41
Alignment explanation
Indices: 731052--731203 Score: 116
Period size: 42 Copynumber: 3.7 Consensus size: 41
731042 TATAGTGTAA
*
731052 TATATTGCGGCGTTTGTGGTATAAACGCCAAAATTTACCAC
1 TATATTGCGGCATTTGTGGTATAAACGCCAAAATTTACCAC
* * * *
731093 TATA-TGCGGCGTTT-TGGCT-CAATCGCCGCAAAATTTA-TAC
1 TATATTGCGGCATTTGTGG-TATAAACG-C-CAAAATTTACCAC
* * **
731133 TCTATTGTGGCATTTGTGGTATAAACGCCGCTAATTTACCAC
1 TATATTGCGGCATTTGTGGTATAAACGCC-AAAATTTACCAC
** *
731175 CCTATTGCGGCATTTTTGTGTA-AAACGCC
1 TATATTGCGGCATTTGTG-GTATAAACGCC
731204 GCTATGTCAA
Statistics
Matches: 88, Mismatches: 14, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
39 7 0.08
40 18 0.20
41 29 0.33
42 31 0.35
43 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (41 bp):
TATATTGCGGCATTTGTGGTATAAACGCCAAAATTTACCAC
Found at i:751131 original size:2 final size:2
Alignment explanation
Indices: 751124--751156 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
751114 TGCTCAATGC
*
751124 TA TA TA TA TA TA TC TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
751157 AATTGTTTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:753477 original size:21 final size:21
Alignment explanation
Indices: 753451--753491 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
753441 TTGGTGTTGG
753451 AAACAAGATAAA-AATAAGATT
1 AAACAAGATAAAGAA-AAGATT
753472 AAACAAGATAAAGAAAAGAT
1 AAACAAGATAAAGAAAAGAT
753492 AAATGAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.68, C:0.05, G:0.12, T:0.15
Consensus pattern (21 bp):
AAACAAGATAAAGAAAAGATT
Found at i:768177 original size:100 final size:98
Alignment explanation
Indices: 767975--768177 Score: 237
Period size: 100 Copynumber: 2.1 Consensus size: 98
767965 TTTGTTTCAT
* *
767975 TTTAGTACCCTACCATTAAGTTTTGATAAAAAATGAAAGTCTAGGTACCAAATACGTTTAGTACC
1 TTTAGTACCCCACCATTAAGTTTTGATAAAAAATGAAAGTCTAGGTACCAAAAACGTTTAGTACC
* ****** *** *
768040 TAAATCATACTTAAAGTTTAGTTTTTGTTTCAT
66 TAAACCATACTTAAAGTTTAGAAAAAATGAAAA
*
768073 TTTAGTACCCCACCATTAAGTTTTGATAAAAAAAATGAAAGTCTAGGTACTAAAAACGTTTAGTA
1 TTTAGTACCCCACCATTAAGTTTTGAT--AAAAAATGAAAGTCTAGGTACCAAAAACGTTTAGTA
*
768138 CCTAAACCATACTT-AAGTTTTGAAAAAAATGAAAA
64 CCTAAACCATACTTAAAGTTTAG-AAAAAATGAAAA
768173 TTTAG
1 TTTAG
768178 GTACTAAAAC
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
98 26 0.30
99 7 0.08
100 54 0.62
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Consensus pattern (98 bp):
TTTAGTACCCCACCATTAAGTTTTGATAAAAAATGAAAGTCTAGGTACCAAAAACGTTTAGTACC
TAAACCATACTTAAAGTTTAGAAAAAATGAAAA
Found at i:771189 original size:20 final size:20
Alignment explanation
Indices: 771164--771227 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
771154 GCGAATTTAG
771164 TTTCGCGTTGCGATTTTCAT
1 TTTCGCGTTGCGATTTTCAT
771184 TTTCGCGTTGCGATTTTCAT
1 TTTCGCGTTGCGATTTTCAT
* * *
771204 TTTCGCATTGCGAATTTAAT
1 TTTCGCGTTGCGATTTTCAT
771224 TTTC
1 TTTC
771228 AAAAACTACT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.14, C:0.19, G:0.17, T:0.50
Consensus pattern (20 bp):
TTTCGCGTTGCGATTTTCAT
Found at i:773035 original size:63 final size:62
Alignment explanation
Indices: 772907--773046 Score: 167
Period size: 63 Copynumber: 2.2 Consensus size: 62
772897 GTTAGGGGAG
* * *
772907 TTACGTGATAAGGTCGG-TGTTTTACGTGAAGACAATGGTGCGCTACGTGATGAGGTACGGTCT
1 TTACATGATGAGGT-GGATGTTTTACGCGAAGACAATGGTGCGCTACGTGATGAGGTAC-GTCT
* * *
772970 TTACATGGTGAGGTGGATGTTTTACGCGATGACAATGGTGCGCTACGTGGTGAGGTATC-TACT
1 TTACATGATGAGGTGGATGTTTTACGCGAAGACAATGGTGCGCTACGTGATGAGGTA-CGT-CT
*
773033 TTACGTGATGAGGT
1 TTACATGATGAGGT
773047 AGCCGCTCTA
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
62 3 0.05
63 62 0.94
64 1 0.02
ACGTcount: A:0.21, C:0.14, G:0.34, T:0.31
Consensus pattern (62 bp):
TTACATGATGAGGTGGATGTTTTACGCGAAGACAATGGTGCGCTACGTGATGAGGTACGTCT
Found at i:773376 original size:21 final size:21
Alignment explanation
Indices: 773352--773458 Score: 128
Period size: 21 Copynumber: 5.1 Consensus size: 21
773342 GTCATCATTT
*
773352 AAGAGGCACCTCCTATCGTTC
1 AAGAGGCCCCTCCTATCGTTC
773373 AAGAGGCCCCT-CTCATCGTTC
1 AAGAGGCCCCTCCT-ATCGTTC
* *
773394 AAGAGGCCCCTCCCACCGTTC
1 AAGAGGCCCCTCCTATCGTTC
773415 AAGAGGCCCCT-CTCATCGTTC
1 AAGAGGCCCCTCCT-ATCGTTC
* * *
773436 AAGAGGTCCCTCCCACCGTTC
1 AAGAGGCCCCTCCTATCGTTC
773457 AA
1 AA
773459 AAGATCGATT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
20 3 0.04
21 69 0.93
22 2 0.03
ACGTcount: A:0.21, C:0.39, G:0.19, T:0.21
Consensus pattern (21 bp):
AAGAGGCCCCTCCTATCGTTC
Found at i:773406 original size:42 final size:42
Alignment explanation
Indices: 773343--773458 Score: 178
Period size: 42 Copynumber: 2.8 Consensus size: 42
773333 GATGCACCTG
* * * * *
773343 TCATCATTTAAGAGGCACCTCCTATCGTTCAAGAGGCCCCTC
1 TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGGCCCCTC
773385 TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGGCCCCTC
1 TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGGCCCCTC
*
773427 TCATCGTTCAAGAGGTCCCTCCCACCGTTCAA
1 TCATCGTTCAAGAGGCCCCTCCCACCGTTCAA
773459 AAGATCGATT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.22, C:0.38, G:0.17, T:0.23
Consensus pattern (42 bp):
TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGGCCCCTC
Found at i:774933 original size:62 final size:63
Alignment explanation
Indices: 774829--774979 Score: 259
Period size: 62 Copynumber: 2.4 Consensus size: 63
774819 TTGAATTTTA
*
774829 CATTTATTTGTAAAAGTTGATTTGTTTAATTGATGAGAAAATAAGAATT-TTTTTGCTTGTTT
1 CATTGATTTGTAAAAGTTGATTTGTTTAATTGATGAGAAAATAAGAATTATTTTTGCTTGTTT
* *
774891 CATTGATTTGTAAAAGTTGATTTGTTTAATTGATGTGTAAATAAGAATTATTTTTGCTTGTTT
1 CATTGATTTGTAAAAGTTGATTTGTTTAATTGATGAGAAAATAAGAATTATTTTTGCTTGTTT
*
774954 AATTGATTTGTAAAAGTTGATTTGTT
1 CATTGATTTGTAAAAGTTGATTTGTT
774980 GTTTATTCAA
Statistics
Matches: 84, Mismatches: 4, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
62 46 0.55
63 38 0.45
ACGTcount: A:0.30, C:0.03, G:0.17, T:0.50
Consensus pattern (63 bp):
CATTGATTTGTAAAAGTTGATTTGTTTAATTGATGAGAAAATAAGAATTATTTTTGCTTGTTT
Found at i:775076 original size:20 final size:20
Alignment explanation
Indices: 775030--775076 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
775020 GTTGAAGGTA
* *
775030 CAAATTCGCAATGTGAAAAT
1 CAAATTCGCAACGCGAAAAT
*
775050 -AATATTCGCAACGCGAAAGT
1 CAA-ATTCGCAACGCGAAAAT
775070 CAAATTC
1 CAAATTC
775077 ACGTTGCGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
19 2 0.09
20 18 0.82
21 2 0.09
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (20 bp):
CAAATTCGCAACGCGAAAAT
Found at i:775184 original size:34 final size:34
Alignment explanation
Indices: 775110--775193 Score: 96
Period size: 34 Copynumber: 2.5 Consensus size: 34
775100 TTTCACGTTT
* * * **
775110 CGAATTTGACTTTCGCAACGCGATAATTGCGTTG
1 CGAATTTGACTTTCGCAACGCAAAAATCGCAATG
* *
775144 CAAATTTGACTATCGCAACGCAAAAATCGCAATG
1 CGAATTTGACTTTCGCAACGCAAAAATCGCAATG
*
775178 CGAATTTAACTTTCGC
1 CGAATTTGACTTTCGC
775194 GTTGCGAATT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (34 bp):
CGAATTTGACTTTCGCAACGCAAAAATCGCAATG
Found at i:778850 original size:21 final size:20
Alignment explanation
Indices: 778761--778874 Score: 140
Period size: 20 Copynumber: 5.7 Consensus size: 20
778751 TTATATTCGT
* * *
778761 GTTGCGAATTTGAAAATCGA
1 GTTGCAAATTTGAAATTCAA
* *
778781 GTTGCAAATTTGAAAATCGA
1 GTTGCAAATTTGAAATTCAA
778801 GTTGCAAATTTGAAATTC-A
1 GTTGCAAATTTGAAATTCAA
778820 GTTGCAAATTTGAAATTCAA
1 GTTGCAAATTTGAAATTCAA
*
778840 TGTTGCGAATTTGAAATTCAA
1 -GTTGCAAATTTGAAATTCAA
*
778861 TGTTGCGAATTTGA
1 -GTTGCAAATTTGA
778875 CTTCTTTGTT
Statistics
Matches: 89, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
19 19 0.21
20 37 0.42
21 33 0.37
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (20 bp):
GTTGCAAATTTGAAATTCAA
Found at i:778920 original size:20 final size:21
Alignment explanation
Indices: 778881--778929 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
778871 TTGACTTCTT
*
778881 TGTTGCGATTTTCTAAATTCG
1 TGTTGCGATTTACTAAATTCG
778902 TGTTGCGATTTAC-AAATTCG
1 TGTTGCGATTTACTAAATTCG
*
778922 CGTTGCGA
1 TGTTGCGA
778930 ATTTGGAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.41
Consensus pattern (21 bp):
TGTTGCGATTTACTAAATTCG
Found at i:778946 original size:20 final size:20
Alignment explanation
Indices: 778932--778976 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
778922 CGTTGCGAAT
778932 TTGGAAACTGGGTTGCAAAA
1 TTGGAAACTGGGTTGCAAAA
**
778952 TTGGAGTCTGGGTTGCAAAA
1 TTGGAAACTGGGTTGCAAAA
778972 TTGGA
1 TTGGA
778977 GTTCACGTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (20 bp):
TTGGAAACTGGGTTGCAAAA
Found at i:778977 original size:20 final size:20
Alignment explanation
Indices: 778939--778978 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
778929 AATTTGGAAA
778939 CTGGGTTGCAAAATTGGAGT
1 CTGGGTTGCAAAATTGGAGT
778959 CTGGGTTGCAAAATTGGAGT
1 CTGGGTTGCAAAATTGGAGT
778979 TCACGTTGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.10, G:0.35, T:0.30
Consensus pattern (20 bp):
CTGGGTTGCAAAATTGGAGT
Found at i:778986 original size:20 final size:20
Alignment explanation
Indices: 778943--778987 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
778933 TGGAAACTGG
**
778943 GTTGCAAAATTGGAGTCTGG
1 GTTGCAAAATTGGAGTCTAC
778963 GTTGCAAAATTGGAGT-TCAC
1 GTTGCAAAATTGGAGTCT-AC
778983 GTTGC
1 GTTGC
778988 GAATTTGTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.24, C:0.13, G:0.31, T:0.31
Consensus pattern (20 bp):
GTTGCAAAATTGGAGTCTAC
Done.