genome.fa.s8533.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008533.1 Hibiscus syriacus cultivar Beakdansim tig00111411_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90926

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10097--10137	14	3.0	14	83	16	59	80	0	12	7	0.90
11098--11588	271	1.8	270	90	2	797	34	18	22	24	1.96
11098--11588	136	3.6	135	91	1	779	34	18	22	24	1.96
14876--14992	59	2.0	58	90	5	182	41	9	11	37	1.75
16891--16943	20	2.7	20	96	0	97	5	35	30	28	1.80
18433--18585	60	2.6	58	80	6	171	40	5	22	30	1.78
20999--21045	23	2.0	24	95	4	87	51	34	12	2	1.52
28650--28725	39	2.0	38	86	2	107	23	15	9	51	1.72
29892--29918	13	2.1	13	100	0	54	37	7	11	44	1.68
30289--30341	15	3.5	15	77	7	63	45	0	3	50	1.19
30285--30343	15	4.0	15	71	16	52	47	0	3	49	1.18
30290--30348	31	1.9	31	86	6	84	44	0	3	52	1.17
30373--30411	19	2.1	19	85	9	53	48	0	2	48	1.15
30346--30420	27	2.7	27	75	8	71	48	1	5	45	1.33
30674--30755	30	2.7	31	83	3	96	37	6	7	48	1.56
30895--30934	2	20.5	2	94	5	73	50	0	0	50	1.00
30938--30978	17	2.4	17	91	0	64	63	2	21	12	1.40
31126--31283	28	5.5	28	83	9	158	36	7	13	41	1.74
31169--31283	28	4.1	28	88	5	162	37	6	14	41	1.71
31169--31283	55	2.1	55	90	4	178	37	6	14	41	1.71
33180--33208	13	2.1	14	93	6	51	13	13	6	65	1.45
34701--34957	42	6.2	42	76	1	122	29	22	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34716--34918	42	4.9	40	79	5	201	26	22	19	32	1.98
34716--34957	124	1.9	126	83	1	308	27	22	19	30	1.98
35273--35305	2	16.5	2	100	0	66	48	0	0	51	1.00
37703--37796	45	2.1	45	100	0	188	20	36	8	35	1.83
38860--38998	59	2.3	60	80	4	156	35	14	4	46	1.64
40538--40598	31	2.0	31	86	0	86	47	13	6	32	1.68
44912--44972	31	2.0	31	86	0	86	34	13	14	37	1.85
45228--45258	2	15.5	2	100	0	62	48	0	0	51	1.00
45321--45351	2	15.5	2	100	0	62	51	0	0	48	1.00
46463--46491	3	9.7	3	100	0	58	31	0	0	68	0.89
47630--47687	29	2.0	29	96	0	107	32	34	12	20	1.90
52178--52213	18	1.9	19	88	5	56	36	8	11	44	1.70
59194--59236	2	21.5	2	100	0	86	48	0	0	51	1.00
64160--64201	22	1.9	22	85	9	59	52	0	0	47	1.00
64967--65105	42	3.3	41	80	10	174	36	20	22	20	1.95
65135--65295	83	1.9	83	92	0	259	36	16	19	28	1.93
65134--65295	41	3.9	41	89	1	252	35	16	19	28	1.93
65975--66132	42	3.8	41	79	6	138	28	15	22	33	1.95
66309--66363	18	3.1	18	86	0	83	21	43	14	20	1.87
68997--69066	3	23.3	3	94	0	122	34	2	0	62	1.10
68997--69075	18	4.4	18	93	3	115	36	2	0	60	1.10
69600--69631	17	1.9	17	93	6	57	81	3	15	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70525--70565	20	2.0	21	85	4	57	36	2	2	58	1.24
70804--70831	2	14.0	2	100	0	56	50	0	0	50	1.00
71267--71313	18	2.7	18	77	9	53	25	0	2	72	0.96
81911--81973	12	5.4	12	81	12	78	84	0	15	0	0.63
81916--81969	16	3.4	16	80	10	67	85	0	14	0	0.61
81911--81973	22	2.7	24	78	14	78	84	0	15	0	0.63
81922--81974	27	1.9	28	92	3	90	83	0	16	0	0.66
82289--82328	16	2.5	16	88	8	55	32	7	7	52	1.58
83097--83529	84	5.2	84	98	1	800	27	14	21	36	1.92
84144--85262	113	10.0	113	89	4	1579	37	12	19	29	1.89
85582--85696	3	38.3	3	98	0	212	33	1	0	64	1.04
85695--85741	23	2.1	21	84	7	58	61	2	0	36	1.08
86231--86260	15	1.9	16	93	6	53	80	3	16	0	0.85
86201--86255	29	1.9	28	85	3	74	61	12	25	0	1.31

Tables:   1

The End!