Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008534.1 Hibiscus syriacus cultivar Beakdansim tig00111412_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53398

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10375--10428
11
4.8
12
82
15
62
83
0
16
0
0.65
10370--10429
10
5.8
10
86
7
68
83
0
16
0
0.65
10373--10429
20
2.7
21
89
5
80
82
0
17
0
0.67
10746--10785
16
2.5
16
88
8
55
32
7
7
52
1.58
11553--11985
84
5.2
84
98
1
800
27
14
21
36
1.92
12612--13720
113
9.9
110
88
5
1567
37
12
20
29
1.89
12629--13720
225
4.8
224
92
2
1658
37
12
19
29
1.89
12606--13726
338
3.3
335
90
3
1673
37
12
19
29
1.89
14042--14153
3
37.3
3
96
0
197
33
2
0
63
1.09
14666--14695
15
1.9
16
93
6
53
80
3
16
0
0.85
14636--14690
29
1.9
28
85
3
74
61
12
25
0
1.31
22749--22950
43
4.7
42
76
6
145
34
23
15
26
1.95
26303--26352
21
2.3
22
83
10
59
20
6
2
72
1.16
28824--28863
20
2.0
21
85
5
55
52
0
2
45
1.14
33109--33319
103
2.0
103
81
4
246
34
13
12
39
1.83
34841--34926
40
2.2
40
85
8
113
43
22
8
26
1.81
36722--36782
32
1.9
31
87
9
88
31
19
18
31
1.96
40519--40605
3
29.0
3
100
0
174
33
0
0
66
0.92
41393--41432
2
19.5
2
94
5
71
47
0
2
50
1.14
42502--42533
12
2.7
12
100
0
64
28
15
25
31
1.96
44946--45146
101
2.0
101
89
3
307
30
12
8
48
1.70
48689--48813
30
4.2
30
65
24
77
20
4
18
56
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50624--50652
12
2.4
12
100
0
58
10
34
17
37
1.84

Tables:   1

The End!