genome.fa.s8535.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008535.1 Hibiscus syriacus cultivar Beakdansim tig00111421_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52742

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922--960	19	2.1	19	86	13	55	30	5	5	58	1.41
6995--7025	2	15.5	2	100	0	62	48	0	0	51	1.00
9838--9869	2	16.0	2	100	0	64	50	0	0	50	1.00
10031--10085	17	3.3	17	73	12	51	27	1	3	67	1.17
11379--11434	20	2.8	20	94	0	94	41	21	23	14	1.89
11437--11584	57	2.6	57	94	0	260	27	15	20	36	1.93
11590--11689	20	5.0	20	88	0	110	44	15	11	30	1.80
11682--11727	20	2.3	20	92	0	74	34	17	15	32	1.91
11702--11877	57	2.8	65	81	15	242	37	19	15	27	1.92
11757--11899	57	2.5	57	94	0	241	36	22	14	26	1.93
11918--11977	29	2.0	30	87	3	86	31	10	25	33	1.89
11946--11987	20	2.0	21	86	4	59	33	16	21	28	1.95
12153--12188	15	2.4	15	90	0	54	58	2	0	38	1.13
15401--15442	9	4.8	9	94	2	59	23	23	0	52	1.47
15409--15443	9	3.9	9	96	0	61	22	28	0	48	1.51
20735--20804	36	1.9	36	100	0	140	45	8	5	40	1.58
22866--23121	20	12.6	20	77	10	198	37	23	18	19	1.94
22904--23123	41	5.4	41	77	10	184	36	24	18	21	1.95
23678--23774	20	4.8	20	77	9	108	52	18	16	12	1.74
23678--23785	19	5.5	19	79	5	99	51	20	15	12	1.75
23781--23900	40	3.1	39	84	5	161	12	23	17	46	1.82
23803--23891	20	4.4	20	83	6	83	12	23	20	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23786--23900	19	5.8	19	82	11	133	12	22	17	47	1.80
25587--25966	94	4.1	94	95	1	665	21	12	18	47	1.82
26054--26152	19	5.7	19	69	24	85	45	22	22	10	1.82
26076--26128	14	3.4	14	72	22	52	43	22	26	7	1.80
26054--26147	33	2.8	33	95	3	163	44	22	22	10	1.83
26119--26162	19	2.3	19	96	0	79	43	27	15	13	1.85
26159--26298	19	7.8	19	71	16	120	12	21	20	46	1.82
26162--26256	33	2.9	33	96	0	172	11	23	20	45	1.83
26159--26274	52	2.2	52	83	8	139	11	22	20	45	1.82
26186--26237	14	3.4	14	72	23	50	9	25	21	44	1.82
26751--26817	21	3.2	21	66	6	55	23	35	20	19	1.95
26699--26817	42	2.8	42	81	5	107	22	36	18	22	1.95
28167--28203	14	2.6	14	88	12	58	32	0	18	48	1.49
28310--28364	19	3.2	19	65	24	57	49	18	18	14	1.80
28310--28394	33	2.5	33	88	1	116	49	18	16	15	1.80
28399--28565	33	4.8	33	82	9	217	14	20	19	44	1.86
28395--28566	19	9.7	19	68	20	104	15	20	19	44	1.86
31001--31054	24	2.2	24	93	0	90	40	20	18	20	1.91
31001--31068	24	2.8	24	84	0	64	38	20	17	23	1.93
31914--32105	20	9.5	20	75	6	136	19	19	23	37	1.94
31911--32105	41	4.8	41	79	9	179	18	19	23	37	1.94
42602--42655	26	2.1	26	86	6	74	29	3	18	48	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44954--45113	29	5.4	29	81	3	144	23	45	20	10	1.82
45063--45113	10	5.1	10	73	17	52	21	49	17	11	1.79
45012--45113	30	3.4	30	87	5	152	23	49	18	8	1.76
45712--45770	27	2.1	28	84	9	77	32	1	16	49	1.56
45886--45940	18	3.4	18	65	31	52	38	0	9	52	1.33
46229--46280	15	3.5	15	69	10	52	40	1	11	46	1.51
48584--48631	14	3.6	14	75	16	57	47	14	0	37	1.44
48583--48631	25	2.0	25	91	0	80	46	14	0	38	1.44
48603--48883	48	5.4	48	71	20	206	47	11	0	41	1.39
48700--48726	10	2.7	10	100	0	54	40	18	0	40	1.51
48599--49227	166	3.8	167	84	10	840	46	12	0	41	1.41
48765--48846	25	3.3	25	66	8	69	47	13	0	39	1.43
48652--49228	60	10.1	59	84	12	762	46	12	0	40	1.42
48883--49021	14	9.7	14	64	25	51	47	12	0	40	1.41
48599--49231	332	1.9	337	87	9	943	46	12	0	40	1.41
52296--52349	28	1.9	28	96	0	99	57	12	0	29	1.36
52292--52356	28	2.3	28	84	10	96	55	10	0	33	1.35
52326--52374	21	2.3	21	85	3	71	53	16	0	30	1.43

Tables:   1

The End!