Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008536.1 Hibiscus syriacus cultivar Beakdansim tig00111423_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76052

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5713--5770
28
2.1
27
84
9
73
27
3
15
53
1.58
10952--11172
4
60.8
4
69
24
136
52
2
3
41
1.29
10956--11168
27
7.9
28
77
16
96
53
2
3
41
1.30
10991--11175
7
25.4
7
73
23
136
54
1
2
41
1.21
10942--11175
49
4.9
48
77
18
183
53
2
2
41
1.30
11016--11175
9
16.3
10
73
22
87
55
0
1
41
1.15
10940--11196
41
6.0
42
73
17
201
52
3
2
40
1.34
10918--11196
46
6.1
45
75
18
215
53
3
2
39
1.33
11390--11421
2
16.5
2
93
6
57
50
0
0
50
1.00
12050--12113
20
3.2
20
97
0
119
28
17
29
25
1.97
12136--12210
22
3.8
20
75
13
66
30
14
28
26
1.95
12706--12857
79
1.9
79
85
2
207
36
9
24
29
1.86
12832--13162
90
3.7
90
84
2
387
38
9
21
30
1.85
12834--13162
135
2.4
135
80
2
401
38
9
20
31
1.85
12795--13162
45
8.2
45
88
1
292
38
9
21
30
1.86
17819--17951
24
5.5
24
80
0
122
22
12
14
51
1.75
17968--18284
154
2.1
153
88
5
460
20
11
29
38
1.88
22571--22627
24
2.4
24
93
0
96
19
8
14
57
1.62
25410--25468
2
29.5
2
100
0
118
49
0
0
50
1.00
28333--28409
21
3.7
21
94
3
138
23
20
27
28
1.99
29055--29095
22
1.9
22
90
5
66
19
24
31
24
1.98
29128--29195
21
3.1
21
77
8
73
25
13
16
45
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29456--29711
45
5.7
45
84
4
302
40
10
21
28
1.85
30757--30828
36
2.0
36
100
0
144
38
5
25
30
1.78
33170--33208
14
2.7
15
80
19
55
43
0
5
51
1.24
41307--41353
25
1.9
24
86
4
67
55
0
2
42
1.12
41359--41407
25
2.0
24
84
11
64
51
0
10
38
1.36
41357--41421
21
2.8
22
76
17
69
50
0
7
41
1.31
43303--43347
21
2.1
21
87
0
63
31
28
24
15
1.96
44992--45058
22
3.0
22
95
2
116
19
26
28
25
1.99
46559--46642
22
3.8
22
91
0
132
41
16
5
35
1.73
48606--48665
21
2.9
21
82
0
75
33
31
15
20
1.93
48613--48684
21
3.4
21
78
5
74
33
31
15
19
1.93
49182--49228
13
3.5
13
80
8
58
25
2
14
57
1.49
49251--49278
13
2.2
13
100
0
56
32
0
7
60
1.24
50910--50959
20
2.5
20
80
9
57
32
10
24
34
1.88
51879--51984
23
4.6
23
75
11
99
24
19
25
30
1.98
51875--51991
47
2.5
48
82
9
136
23
20
25
29
1.99
58022--58107
24
3.6
24
75
10
86
25
23
23
27
2.00
63484--63522
10
3.9
10
86
0
60
58
10
12
17
1.61
63485--63522
20
1.9
20
94
0
67
57
10
13
18
1.63
63704--63740
10
3.7
10
92
0
65
64
18
5
10
1.43
64620--64657
20
2.0
19
90
10
60
52
15
13
18
1.74
71801--71851
17
3.0
17
88
0
66
19
15
3
60
1.50

Tables:   1

The End!