Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008537.1 Hibiscus syriacus cultivar Beakdansim tig00111424_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80980

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
616--668
27
2.0
26
85
14
72
73
0
5
20
1.03
3762--3828
22
3.0
22
95
2
116
19
26
28
25
1.99
5311--5366
18
2.9
18
84
10
67
37
19
7
35
1.79
5311--5390
22
3.8
22
80
12
96
40
17
6
36
1.75
7329--7388
21
2.9
21
82
0
75
33
31
15
20
1.93
7336--7397
21
3.0
21
80
0
70
32
29
16
22
1.95
7338--7405
21
3.2
21
79
4
66
33
32
13
20
1.91
7900--7938
13
2.9
13
84
3
51
23
2
17
56
1.53
10561--10665
23
4.6
23
75
8
88
24
20
24
30
1.98
10584--10671
24
3.8
24
73
18
78
26
19
25
29
1.98
16645--16730
24
3.6
24
75
10
86
25
23
23
27
2.00
22071--22109
10
3.9
10
86
0
60
58
10
12
17
1.61
22072--22109
20
1.9
20
94
0
67
57
10
13
18
1.63
22290--22326
10
3.7
10
92
0
65
64
18
5
10
1.43
30399--30449
17
3.0
17
88
0
66
19
15
3
60
1.50
38141--38196
29
1.9
29
85
7
78
32
23
12
32
1.92
40828--40865
18
2.2
18
85
4
51
73
5
21
0
1.02
47274--47333
30
2.0
30
90
6
95
48
5
0
46
1.24
47290--47333
14
3.0
14
76
23
54
50
4
0
45
1.22
47320--47398
39
2.0
39
97
0
149
50
3
13
31
1.60
61208--61240
17
2.0
16
94
5
57
39
12
36
12
1.80
62598--62633
2
18.0
2
94
0
63
47
0
2
50
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63156--63180
3
8.3
3
100
0
50
64
0
0
36
0.94
66017--66068
20
2.6
20
100
0
104
26
19
19
34
1.95
70053--70097
20
2.3
20
85
11
58
73
4
6
15
1.21
70004--70162
77
2.1
77
90
0
255
66
5
8
20
1.39
72187--72556
133
2.8
135
83
3
478
21
15
27
35
1.94
72934--73260
100
3.2
101
84
4
412
35
10
19
34
1.87
73720--73744
12
2.1
12
100
0
50
44
0
24
32
1.54

Tables:   1

The End!