genome.fa.s854.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000854.1 Hibiscus syriacus cultivar Beakdansim tig00001657_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64110

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5837--5867	16	1.9	16	93	0	53	32	0	6	61	1.21
12853--12881	6	4.8	6	100	0	58	34	0	31	34	1.58
17981--18025	24	1.9	23	86	4	63	53	2	2	42	1.25
20730--20754	2	12.5	2	100	0	50	48	0	0	52	1.00
23880--23950	37	1.9	37	94	0	124	42	2	7	47	1.45
30885--30933	21	2.3	21	96	0	89	42	12	18	26	1.85
35512--35559	21	2.3	21	92	0	78	39	12	20	27	1.89
36430--36480	23	2.1	26	85	10	72	21	29	5	43	1.76
37464--37529	27	2.4	27	80	10	80	30	1	3	65	1.17
47673--47977	168	1.8	168	82	5	391	32	11	23	31	1.91
51701--51752	21	2.5	21	87	3	70	38	17	25	19	1.93
51741--51854	20	5.7	20	83	6	113	31	25	18	24	1.97
51738--51854	61	1.9	61	85	0	162	33	24	17	23	1.97
52372--52438	19	3.5	19	81	2	80	49	25	16	8	1.74
52434--52584	19	8.1	19	81	10	159	11	23	20	43	1.85
54662--54861	41	4.8	41	76	5	179	23	35	18	23	1.96
54727--54841	21	5.5	21	64	10	56	22	32	21	23	1.98
54659--54831	83	2.1	83	94	3	314	21	36	17	24	1.95
54659--54861	83	2.5	83	88	4	259	22	34	18	23	1.96
56215--56249	14	2.6	14	95	4	63	31	0	25	42	1.55
56405--56535	65	2.0	65	92	2	219	16	22	19	41	1.90
56478--56536	19	3.4	19	73	22	74	13	22	18	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56412--56536	33	3.8	33	83	7	175	15	22	19	43	1.88
59000--59053	24	2.2	24	90	0	81	40	20	16	22	1.91
59788--59838	20	2.5	20	100	0	102	29	19	31	19	1.97
60045--60094	19	2.5	20	90	3	75	32	24	24	20	1.98
60125--60178	14	3.5	14	75	22	54	11	22	20	46	1.82
60107--60177	33	2.2	33	81	0	79	19	21	21	38	1.94
60120--60183	33	1.9	33	90	0	101	14	23	20	42	1.88
60291--60327	14	2.6	14	86	0	56	48	21	0	29	1.50
62069--62136	24	2.9	23	68	23	61	54	14	11	19	1.70
62162--62215	20	2.7	20	80	11	65	37	22	22	18	1.95
62233--62283	18	2.8	18	81	3	57	43	23	19	13	1.87
62295--62352	14	3.9	14	79	16	71	10	17	24	48	1.78
62278--62368	32	2.8	33	94	3	166	12	18	21	47	1.81
62353--62406	20	2.7	19	83	8	63	14	24	24	37	1.93
62890--62932	18	2.4	18	84	0	59	16	16	41	25	1.88

Tables:   1

The End!