Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008543.1 Hibiscus syriacus cultivar Beakdansim tig00111432_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 282078
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33
File 1 of 3
Found at i:2540 original size:22 final size:22
Alignment explanation
Indices: 2515--2584 Score: 54
Period size: 21 Copynumber: 3.1 Consensus size: 22
2505 GGGTTCAAGA
2515 TGAAAACCCGTAAAGGGCGCCT
1 TGAAAACCCGTAAAGGGCGCCT
* * * *
2537 TG-AAACCAG-AGAAGGTCTCAGGT
1 TGAAAACCCGTA-AAGGGCGC--CT
*
2560 TGAAAACCCGTAAAGGGCGGCT
1 TGAAAACCCGTAAAGGGCGCCT
2582 TGA
1 TGA
2585 GAATTGTGTA
Statistics
Matches: 34, Mismatches: 9, Indels: 10
0.64 0.17 0.19
Matches are distributed among these distances:
20 1 0.03
21 12 0.35
22 6 0.18
23 3 0.09
24 11 0.32
25 1 0.03
ACGTcount: A:0.33, C:0.21, G:0.30, T:0.16
Consensus pattern (22 bp):
TGAAAACCCGTAAAGGGCGCCT
Found at i:4025 original size:113 final size:114
Alignment explanation
Indices: 3710--4366 Score: 1001
Period size: 113 Copynumber: 5.8 Consensus size: 114
3700 CTTCAGAATA
*
3710 TGATATTCCCTTCAGAGTAAGCGAAACATGTCTCTC-TTTCCAAGATTTGATATTCCCTTCAGAG
1 TGATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTTCCAAGATTTGATATTCCCTTCAGAG
* *
3774 TAAGTGGAACAAGTCT-TCCTCGATTCAATGGATCAACTCCTCCAGATC
66 TAAGTGGAACAAGTCTACCCTCGATTCAATGGATCAACTCCCCCAGATC
*
3822 TGATATTCCCTTCAGAGTAAGCGGAACAGGTCTCTC-TTT-CAAGATTTGATATTCCCTTCAGAG
1 TGATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTTCCAAGATTTGATATTCCCTTCAGAG
*
3885 TAAGTGGAACAAGTCTA-CCTCGATTCAATGAATCAACTCCCCCAGATC
66 TAAGTGGAACAAGTCTACCCTCGATTCAATGGATCAACTCCCCCAGATC
* *
3933 TGATATTCCCTTCAGAGTAAGCGGAACAGGTCTCTCTTATCCAAGATTTGATATTCCCTTCAGAG
1 TGATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTTCCAAGATTTGATATTCCCTTCAGAG
*
3998 TAAGTGGAACAAGTCTACCCT-GATTCAATGGATCAATTCCCCCAGATC
66 TAAGTGGAACAAGTCTACCCTCGATTCAATGGATCAACTCCCCCAGATC
* * * *
4046 TGATATTCCCTTCTGAGTAAGCGGAACATATATCTCTTTTCTAAGATTTGATATTCCCTTCAGAG
1 TGATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTTCCAAGATTTGATATTCCCTTCAGAG
* *
4111 TAAGTGGAACAAGTCTACCCT-GATTCAATGGATCAATTCCCCCAGATA
66 TAAGTGGAACAAGTCTACCCTCGATTCAATGGATCAACTCCCCCAGATC
* * *
4159 TGATA-TCCCTTCAGAGTAAGCGGAACATGTCTATTTTTTCCAAGATTTGATATTCCATTCAGAG
1 TGATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTTCCAAGATTTGATATTCCCTTCAGAG
* * * * *
4223 TAAGTGGAACAAGTCTA-CCTAGATTCAATGGATTAACTCCCCAAAATA
66 TAAGTGGAACAAGTCTACCCTCGATTCAATGGATCAACTCCCCCAGATC
* *
4271 TGATATTCCCTTCAGAGTAAGCGGAACATATCTCTTTTTTTTCCAAGATTTGATATTCCCTTCAG
1 TGATATTCCCTTCAGAGTAAGCGGAACATGTCTC--TCTTTTCCAAGATTTGATATTCCCTTCAG
*
4336 AGTAAGTGGAACAAGTCTA-CCTTGATTCAAT
64 AGTAAGTGGAACAAGTCTACCCTCGATTCAAT
4367 ATTCCCTGAA
Statistics
Matches: 508, Mismatches: 29, Indels: 13
0.92 0.05 0.02
Matches are distributed among these distances:
111 108 0.21
112 136 0.27
113 203 0.40
114 3 0.01
115 58 0.11
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (114 bp):
TGATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTTCCAAGATTTGATATTCCCTTCAGAG
TAAGTGGAACAAGTCTACCCTCGATTCAATGGATCAACTCCCCCAGATC
Found at i:4237 original size:225 final size:224
Alignment explanation
Indices: 3707--4366 Score: 1004
Period size: 225 Copynumber: 2.9 Consensus size: 224
3697 TCCCTTCAGA
* * *
3707 ATATGATATTCCCTTCAGAGTAAGCGAAACATGTCTCTCTTTCCAAGATTTGATATTCCCTTCAG
1 ATATGATATTCCCTTCAGAGTAAGCGGAACATGTCTTTTTTTCCAAGATTTGATATTCCCTTCAG
* * *
3772 AGTAAGTGGAACAAGTCTTCCTCGATTCAATGGATCAACTCCTCCAGATCTGATATTCCCTTCAG
66 AGTAAGTGGAACAAGTCTACCTAGATTCAATGGATCAACTCCCCCAGATCTGATATTCCCTTCAG
**
3837 AGTAAGCGGAACAGGTCTCTC-TTTCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
131 AGTAAGCGGAACATATCTCTCTTTTCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
3901 A-CCTCGATTCAATGAATCAACTCCCCCAG
196 ACCCT-GATTCAATGAATCAACTCCCCCAG
* * * *
3930 ATCTGATATTCCCTTCAGAGTAAGCGGAACAGGTCTCTCTTATCCAAGATTTGATATTCCCTTCA
1 ATATGATATTCCCTTCAGAGTAAGCGGAACATGTCT-TTTTTTCCAAGATTTGATATTCCCTTCA
*
3995 GAGTAAGTGGAACAAGTCTACCCT-GATTCAATGGATCAATTCCCCCAGATCTGATATTCCCTTC
65 GAGTAAGTGGAACAAGTCTA-CCTAGATTCAATGGATCAACTCCCCCAGATCTGATATTCCCTTC
* *
4059 TGAGTAAGCGGAACATATATCTCTTTTCTAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAG
129 AGAGTAAGCGGAACATATCTCTCTTTTC-AAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAG
* *
4124 TCTACCCTGATTCAATGGATCAATTCCCCCAG
193 TCTACCCTGATTCAATGAATCAACTCCCCCAG
*
4156 ATATGATA-TCCCTTCAGAGTAAGCGGAACATGTCTATTTTTTCCAAGATTTGATATTCCATTCA
1 ATATGATATTCCCTTCAGAGTAAGCGGAACATGTCT-TTTTTTCCAAGATTTGATATTCCCTTCA
* * * *
4220 GAGTAAGTGGAACAAGTCTACCTAGATTCAATGGATTAACTCCCCAAAATATGATATTCCCTTCA
65 GAGTAAGTGGAACAAGTCTACCTAGATTCAATGGATCAACTCCCCCAGATCTGATATTCCCTTCA
*
4285 GAGTAAGCGGAACATATCTCTTTTTTTTCCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAA
130 GAGTAAGCGGAACATATCTC--TCTTTT-CAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAA
*
4350 GTCTACCTTGATTCAAT
192 GTCTACCCTGATTCAAT
4367 ATTCCCTGAA
Statistics
Matches: 397, Mismatches: 31, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
223 33 0.08
224 103 0.26
225 132 0.33
226 69 0.17
227 59 0.15
228 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (224 bp):
ATATGATATTCCCTTCAGAGTAAGCGGAACATGTCTTTTTTTCCAAGATTTGATATTCCCTTCAG
AGTAAGTGGAACAAGTCTACCTAGATTCAATGGATCAACTCCCCCAGATCTGATATTCCCTTCAG
AGTAAGCGGAACATATCTCTCTTTTCAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
ACCCTGATTCAATGAATCAACTCCCCCAG
Found at i:6065 original size:22 final size:22
Alignment explanation
Indices: 6032--6082 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
6022 GATATATAAC
6032 ATATT-TTATAAGCATA-TATATT
1 ATATTATT-TAAGCATATTATA-T
**
6054 ATATTATTTAAGTGTATTATAT
1 ATATTATTTAAGCATATTATAT
6076 ATATTAT
1 ATATTAT
6083 ATAGTATGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
22 19 0.76
23 6 0.24
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (22 bp):
ATATTATTTAAGCATATTATAT
Found at i:6145 original size:17 final size:17
Alignment explanation
Indices: 6123--6177 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
6113 CATTATGTAA
6123 TATATATATAACATGCG
1 TATATATATAACATGCG
* ***
6140 TATATATTATAATTATTTT
1 TATATA-TATAA-CATGCG
6159 TATATATATAACATGCG
1 TATATATATAACATGCG
6176 TA
1 TA
6178 ACACTTATAT
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
17 10 0.36
18 10 0.36
19 8 0.29
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.45
Consensus pattern (17 bp):
TATATATATAACATGCG
Found at i:6256 original size:21 final size:20
Alignment explanation
Indices: 6208--6256 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
6198 TAATAATTTT
6208 TATTAATTTACGCATATAGA
1 TATTAATTTACGCATATAGA
* *
6228 TATATAATTTATGCATATTATA
1 TAT-TAATTTACGCATA-TAGA
6250 TATTAAT
1 TATTAAT
6257 ATTTTTAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 3 0.12
21 16 0.64
22 6 0.24
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (20 bp):
TATTAATTTACGCATATAGA
Found at i:8475 original size:111 final size:111
Alignment explanation
Indices: 8234--8456 Score: 347
Period size: 111 Copynumber: 2.0 Consensus size: 111
8224 GGCCCACCTA
* * * *
8234 AAAGGCGATTACGACAATTATAACTCACCAACTAATTGTTTCTTTCTATTTTAGTCATTTAGCTT
1 AAAGCCGATTACAAAAATTATAACTCACCAACTAATTGTGTCTTTCTATTTTAGTCATTTAGCTT
* *
8299 TTTTTTTTGTTGGTAAAAACGCCACTCATTACTCTTTTTTATGTTG
66 TTTTTTTTGTTGATAAAAACGCCACTCATTACTCTTTTCTATGTTG
* * * *
8345 AAAGGCGATTACGACAATTATAAGTCACCAACTAATTGTGTCTTTCTATTTTAGTCATTTAGCTT
1 AAAGCCGATTACAAAAATTATAACTCACCAACTAATTGTGTCTTTCTATTTTAGTCATTTAGCTT
8410 TTTTTTGTTGTTGATAAAAACGCCACTCATTACTCTTTTCTATGTTG
66 TTTTTT-TTGTTGATAAAAACGCCACTCATTACTCTTTTCTATGTTG
8457 GTTGTCCGTT
Statistics
Matches: 107, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
111 69 0.64
112 38 0.36
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (111 bp):
AAAGCCGATTACAAAAATTATAACTCACCAACTAATTGTGTCTTTCTATTTTAGTCATTTAGCTT
TTTTTTTTGTTGATAAAAACGCCACTCATTACTCTTTTCTATGTTG
Found at i:14907 original size:41 final size:41
Alignment explanation
Indices: 14862--14996 Score: 203
Period size: 41 Copynumber: 3.5 Consensus size: 41
14852 ATTCGTATTG
14862 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
* *
14903 CATTTCGCATTGCG--A--T---AATCACGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
14937 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
14978 CATTTCGCGTTGCGATAGT
1 CATTTCGCGTTGCGATAGT
14997 CTACAGTTGT
Statistics
Matches: 83, Mismatches: 4, Indels: 14
0.82 0.04 0.14
Matches are distributed among these distances:
34 30 0.36
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
41 49 0.59
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (41 bp):
CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
Found at i:14915 original size:20 final size:20
Alignment explanation
Indices: 14887--14993 Score: 91
Period size: 20 Copynumber: 5.6 Consensus size: 20
14877 TAGTTGAAAA
14887 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
* *
14907 TCGCATTGCGA---T--A-A
1 TCGCGTTGCGATTTTCCATT
*
14921 TCACGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
* ** **
14941 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGAT-TTTCCATT
14962 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
14982 TCGCGTTGCGAT
1 TCGCGTTGCGAT
14994 AGTCTACAGT
Statistics
Matches: 64, Mismatches: 16, Indels: 14
0.68 0.17 0.15
Matches are distributed among these distances:
14 9 0.14
15 1 0.02
17 2 0.03
19 1 0.02
20 36 0.56
21 15 0.23
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCATT
Found at i:14933 original size:34 final size:34
Alignment explanation
Indices: 14885--14994 Score: 139
Period size: 34 Copynumber: 3.0 Consensus size: 34
14875 GATAGTTGAA
*
14885 AATCGCGTTGCGATTTTCCATTTCGCATTGCGAT
1 AATCGCGTTGCGATTTTCCATTTCGCGTTGCGAT
*
14919 AATCACGTTGCGATTTTCCATTTCGCGTTGCGATAGTT
1 AATCGCGTTGCGATTTTCCATTTCGCGTTGCG--A--T
14957 GAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGAT
1 ---AATCGCGTTGCGATTTTCCATTTCGCGTTGCGAT
14994 A
1 A
14995 GTCTACAGTT
Statistics
Matches: 66, Mismatches: 3, Indels: 14
0.80 0.04 0.17
Matches are distributed among these distances:
34 31 0.47
36 1 0.02
37 1 0.02
38 1 0.02
39 1 0.02
41 31 0.47
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (34 bp):
AATCGCGTTGCGATTTTCCATTTCGCGTTGCGAT
Found at i:15788 original size:22 final size:22
Alignment explanation
Indices: 15760--15813 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
15750 AATTTGGAAA
*
15760 ATCGCAACGACAACTGTAGATT
1 ATCGCAACGACAACTGTAGACT
*
15782 ATCGCAACAACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
15804 ATCGCAACGA
1 ATCGCAACGA
15814 ATTTGGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.39, C:0.26, G:0.17, T:0.19
Consensus pattern (22 bp):
ATCGCAACGACAACTGTAGACT
Found at i:15830 original size:19 final size:19
Alignment explanation
Indices: 15808--15851 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
15798 TAGACTATCG
15808 CAACGAATTTGGAAAATCA
1 CAACGAATTTGGAAAATCA
*
15827 CAACGAATTTGGAAAATCG
1 CAACGAATTTGGAAAATCA
15846 CAACGA
1 CAACGA
15852 CAACTGTAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.18
Consensus pattern (19 bp):
CAACGAATTTGGAAAATCA
Found at i:15889 original size:20 final size:20
Alignment explanation
Indices: 15864--15940 Score: 91
Period size: 20 Copynumber: 3.8 Consensus size: 20
15854 ACTGTAGACT
15864 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
** ** *
15884 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGGAA-A
*
15905 ATCGCAACACGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
15925 ATCGCAACGCGAAATG
1 ATCGCAACGCGAAATG
15941 CAACACGAAT
Statistics
Matches: 44, Mismatches: 12, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
20 30 0.68
21 14 0.32
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGAAATGGAAA
Found at i:17832 original size:14 final size:13
Alignment explanation
Indices: 17810--17853 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
17800 ATTTTTTATA
17810 TTAATTATAATCC
1 TTAATTATAATCC
**
17823 TTATATTATAAAAC
1 TTA-ATTATAATCC
*
17837 TTAATTATAATCA
1 TTAATTATAATCC
17850 TTAA
1 TTAA
17854 ATTAATTTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (13 bp):
TTAATTATAATCC
Found at i:24135 original size:16 final size:17
Alignment explanation
Indices: 24114--24154 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
24104 CATAAAATTA
*
24114 TAAATAATT-AATATAT
1 TAAATAATTAAAAATAT
24130 TAAAT-ATTAAAAATAT
1 TAAATAATTAAAAATAT
*
24146 AAAATAATT
1 TAAATAATT
24155 TTAAATACTC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 3 0.14
16 15 0.71
17 3 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TAAATAATTAAAAATAT
Found at i:25117 original size:265 final size:256
Alignment explanation
Indices: 24593--25124 Score: 756
Period size: 265 Copynumber: 2.0 Consensus size: 256
24583 TTTTATTATT
* *
24593 TCGGGTGAAACTTTATTTTGGTCGGGTCGGGTCGGGTCGGTTTTTTTAAGTGTGATATTTGGGTC
1 TCGGGTGAAACTTTATTTTGGTCGGGTCGGGTCGGGT--GTTTTTTTAAGTATGATATTCGGGTC
*
24658 GGGTTGAGTTTGGGTTTAGGGTGAAAAATACCTGACCCAAAAATATATATAATTTTACCTTATAT
64 GGGTTGAGTTCGGGTTTAGGGTGAAAAATACCTGACCCAAAAATATATATAATTTTACCTTATAT
* * * * *
24723 ATTTAGGAATAATTACAATAATATCCCTCTATATATAATTTTTTTCAATTAAGTCACTGTTTTTA
129 ATTTAGGAATAATTACAATAATATCCCTCTATATATAATTTTTTCCAATAAAGCCACTATTGTTA
24788 TTGAATAAAAATATTTTTTTTATTTCGGGTCGGGTCGGATTTCTAATTCATATATTCGGGTCGGG
194 TTGAATAAAAATATTTTTTTTATTTCGGGTC-GG-CGGATTTCTAATTCATATATTCGGGTCGGG
*
24853 TCGGGTGAAACTTTATTTTGGTTGGGTCGGGTC-GGT-TTTTTTTAAGTATGATATTCGGGTCGG
1 TCGGGTGAAACTTTATTTTGGTCGGGTCGGGTCGGGTGTTTTTTTAAGTATGATATTCGGGTCGG
* *
24916 GTTGGGTTCGGGTTTTGGGTGAAAAATACCCGACCCGACCTGACCCAAAAA-ATATATAATTTTA
66 GTTGAGTTCGGGTTTAGGGTGAAAAAT----------ACCTGACCCAAAAATATATATAATTTTA
24980 CCTTATATATTTAGGAATAATTACAATAATATCCCTCTATATAT-ATTTTTTCCAATAAAGCCAC
121 CCTTATATATTTAGGAATAATTACAATAATATCCCTCTATATATAATTTTTTCCAATAAAGCCAC
25044 TATTGTTATTGAATAAAAATATTTTTTTATTATTTCGGGTC-G-GG-TTTCTAATTCATATATTC
186 TATTGTTATTGAATAAAAATA-TTTTTT-TTATTTCGGGTCGGCGGATTTCTAATTCATATATTC
*
25106 GGATC-GG
249 GGGTCGGG
25113 TCGGGTGAAACT
1 TCGGGTGAAACT
25125 CGGTTGGGTC
Statistics
Matches: 248, Mismatches: 12, Indels: 24
0.87 0.04 0.08
Matches are distributed among these distances:
256 49 0.20
259 3 0.01
260 46 0.19
261 22 0.09
262 2 0.01
264 37 0.15
265 63 0.25
266 26 0.10
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (256 bp):
TCGGGTGAAACTTTATTTTGGTCGGGTCGGGTCGGGTGTTTTTTTAAGTATGATATTCGGGTCGG
GTTGAGTTCGGGTTTAGGGTGAAAAATACCTGACCCAAAAATATATATAATTTTACCTTATATAT
TTAGGAATAATTACAATAATATCCCTCTATATATAATTTTTTCCAATAAAGCCACTATTGTTATT
GAATAAAAATATTTTTTTTATTTCGGGTCGGCGGATTTCTAATTCATATATTCGGGTCGGG
Found at i:29778 original size:20 final size:21
Alignment explanation
Indices: 29732--29778 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
29722 AGGGTGAGAT
* *
29732 TCGATATTGGTTCATGCATTA
1 TCGATATTGGTTCATACAATA
*
29753 TTGATATT-GTTCATACAATA
1 TCGATATTGGTTCATACAATA
29773 TCGATA
1 TCGATA
29779 CTAAATGGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.43
Consensus pattern (21 bp):
TCGATATTGGTTCATACAATA
Found at i:29911 original size:21 final size:21
Alignment explanation
Indices: 29885--29926 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
29875 ATCGATACTC
*
29885 GAGTATCCATTCTCTCTAATT
1 GAGTATCCATACTCTCTAATT
*
29906 GAGTATTCATACTCTCTAATT
1 GAGTATCCATACTCTCTAATT
29927 TGGTACTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.43
Consensus pattern (21 bp):
GAGTATCCATACTCTCTAATT
Found at i:29936 original size:21 final size:21
Alignment explanation
Indices: 29896--29940 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
29886 AGTATCCATT
*
29896 CTCTCTAATTGAGTATTCATA
1 CTCTCTAATTGAGTACTCATA
29917 CTCTCTAATTTG-GTACTCATA
1 CTCTCTAA-TTGAGTACTCATA
29938 CTC
1 CTC
29941 CTAGTTGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.24, C:0.24, G:0.09, T:0.42
Consensus pattern (21 bp):
CTCTCTAATTGAGTACTCATA
Found at i:30727 original size:42 final size:42
Alignment explanation
Indices: 30680--30771 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
30670 GTACTTGATG
* * *
30680 TTTAGTGACACCATGTGCCATTTTTATTTTATGTT-ACCTACT
1 TTTAGTGACACCATGTGCCATTTCTATTTCATGTTAACC-ACC
*
30722 TTTAGTGACACCATGTTCCATTTCTATTTCATGTTAACCACC
1 TTTAGTGACACCATGTGCCATTTCTATTTCATGTTAACCACC
30764 TTTAGTGA
1 TTTAGTGA
30772 TATCAGGTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 42 0.93
43 3 0.07
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.45
Consensus pattern (42 bp):
TTTAGTGACACCATGTGCCATTTCTATTTCATGTTAACCACC
Found at i:31547 original size:21 final size:21
Alignment explanation
Indices: 31523--31571 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
31513 TAAGCGCCGC
* *
31523 TAAAAACATTCCTGGCGCAAG
1 TAAAAACATTCCCGACGCAAG
*
31544 TAAAAAAATTCCCGACGCAAG
1 TAAAAACATTCCCGACGCAAG
31565 TAAAAAC
1 TAAAAAC
31572 GTCGCAAGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.47, C:0.22, G:0.14, T:0.16
Consensus pattern (21 bp):
TAAAAACATTCCCGACGCAAG
Found at i:32021 original size:48 final size:48
Alignment explanation
Indices: 31946--32041 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
31936 ATTAACCAGT
* *
31946 GACAAGTACCAATCGCAATACACATATAATTAAACAAGTTTATGGGAA
1 GACAAGTACCAATCACAATACAAATATAATTAAACAAGTTTATGGGAA
31994 GACAAGTACCAATCACAATACAAATATAATTAAACAAGTTTATGGGAA
1 GACAAGTACCAATCACAATACAAATATAATTAAACAAGTTTATGGGAA
32042 AAATATTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.48, C:0.16, G:0.14, T:0.23
Consensus pattern (48 bp):
GACAAGTACCAATCACAATACAAATATAATTAAACAAGTTTATGGGAA
Found at i:35255 original size:9 final size:9
Alignment explanation
Indices: 35243--35267 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
35233 AAAATTTAAA
35243 TTTTTATAT
1 TTTTTATAT
35252 TTTTTATAT
1 TTTTTATAT
35261 TTTTTAT
1 TTTTTAT
35268 TAAAATTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTTATAT
Found at i:35810 original size:25 final size:25
Alignment explanation
Indices: 35775--35841 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 25
35765 TAGCTTAGTA
35775 AATA-TTTATATTTGAAAT-TTATTT
1 AATATTTTATATTTGAAATATT-TTT
35799 AATATTTTATATTTAGAAATATTTTT
1 AATATTTTATATTT-GAAATATTTTT
* *
35825 -ATATTATATTTTTGAAA
1 AATATTTTATATTTGAAA
35842 AATGGGTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
24 8 0.21
25 20 0.53
26 8 0.21
27 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (25 bp):
AATATTTTATATTTGAAATATTTTT
Found at i:35812 original size:18 final size:18
Alignment explanation
Indices: 35777--35835 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
35767 GCTTAGTAAA
* *
35777 TATTT-ATATTTGAAATT
1 TATTTAATATTTTATATT
35794 TATTTAATATTTTATATT
1 TATTTAATATTTTATATT
**
35812 TA-GAAATATTTTTATATT
1 TATTTAATA-TTTTATATT
35830 ATATTT
1 -TATTT
35836 TTGAAAAATG
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
17 9 0.28
18 21 0.66
19 2 0.06
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
TATTTAATATTTTATATT
Found at i:35841 original size:24 final size:24
Alignment explanation
Indices: 35775--35841 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 24
35765 TAGCTTAGTA
*
35775 AATATTTATATTTGAAATTTATTT
1 AATATTTATTTTTGAAATTTATTT
*
35799 AATATTTTATATTTAGAAATATT-TTT
1 AATA-TTTAT-TTTTGAAAT-TTATTT
35825 -ATATTATATTTTTGAAA
1 AATATT-TATTTTTGAAA
35842 AATGGGTAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
24 13 0.36
25 11 0.31
26 10 0.28
27 2 0.06
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (24 bp):
AATATTTATTTTTGAAATTTATTT
Found at i:37309 original size:47 final size:44
Alignment explanation
Indices: 37238--37363 Score: 144
Period size: 47 Copynumber: 2.8 Consensus size: 44
37228 TATAAAATCT
**
37238 CTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTACCAAAATA
1 CTTACCA-TTATTACATAAGCTCGTAAGCTTATTTTACCAAAATA
* *
37283 CTTACCATTTAAATTACATAAGCTCGTAAGCTTATTTTTCCAATATA
1 CTTACCA-TT--ATTACATAAGCTCGTAAGCTTATTTTACCAAAATA
* * * *
37330 CTTGCCATTATTCCGTAAGCTCATAAGCTTATTT
1 CTTACCATTATTACATAAGCTCGTAAGCTTATTT
37364 GCATGGTTAC
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
44 22 0.31
45 10 0.14
46 2 0.03
47 37 0.52
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (44 bp):
CTTACCATTATTACATAAGCTCGTAAGCTTATTTTACCAAAATA
Found at i:37516 original size:40 final size:40
Alignment explanation
Indices: 37467--37588 Score: 226
Period size: 40 Copynumber: 3.0 Consensus size: 40
37457 ACCGTAGTGC
* *
37467 TACATATAAGGCCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
37507 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
37547 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
37587 TA
1 TA
37589 TAAACCTGCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 80 1.00
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
Found at i:40048 original size:21 final size:20
Alignment explanation
Indices: 39962--40119 Score: 86
Period size: 21 Copynumber: 7.8 Consensus size: 20
39952 AAATGACCAA
**
39962 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
39981 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
40001 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
40021 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
40042 TAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
40063 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
40083 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
40104 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
40120 ACACATAAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:40148 original size:20 final size:20
Alignment explanation
Indices: 40086--40315 Score: 232
Period size: 20 Copynumber: 11.5 Consensus size: 20
40076 CGATTTTCCA
* ** *
40086 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
40106 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
40126 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
40146 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
40166 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
40186 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
40206 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
40226 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
40246 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
40266 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
40286 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
40306 AAATCACAAC
1 AAATCGCAAC
40316 ACTGAAATTT
Statistics
Matches: 176, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
19 2 0.01
20 172 0.98
21 2 0.01
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:41033 original size:24 final size:24
Alignment explanation
Indices: 40994--41040 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
40984 AAATTTGGTC
40994 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
41018 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
41041 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:41232 original size:12 final size:12
Alignment explanation
Indices: 41215--41239 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
41205 ATATAATCCT
41215 GAAGAAGAAAAA
1 GAAGAAGAAAAA
41227 GAAGAAGAAAAA
1 GAAGAAGAAAAA
41239 G
1 G
41240 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:43572 original size:33 final size:34
Alignment explanation
Indices: 43521--43751 Score: 228
Period size: 33 Copynumber: 6.7 Consensus size: 34
43511 CGGAAATTAC
*
43521 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
* *
43554 AATCCCAAC-ATGAAAATCGCAATACGGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGC-GAAATGAA
*
43588 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
*
43621 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAG
1 AATCGCAA--CG--ATGAAAATCGCAATGCGAAATGAA
43654 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAA--CG--ATGAAAATCGCAATGCGAAATGAA
*
43692 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
43725 AATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAA--CG--ATGAAAATCGCAA
43752 CCAGAGAATC
Statistics
Matches: 169, Mismatches: 11, Indels: 31
0.80 0.05 0.15
Matches are distributed among these distances:
32 1 0.01
33 94 0.56
34 30 0.18
35 7 0.04
36 4 0.02
37 3 0.02
38 30 0.18
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.13
Consensus pattern (34 bp):
AATCGCAACGATGAAAATCGCAATGCGAAATGAA
Found at i:43626 original size:19 final size:19
Alignment explanation
Indices: 43535--43751 Score: 240
Period size: 19 Copynumber: 12.4 Consensus size: 19
43525 GCAACGAGAG
43535 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
43554 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
*
43568 AATCGCAATACGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
43588 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
43602 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
43621 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
43640 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
43654 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
43673 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
43692 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
43706 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
43725 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
43744 AATCGCAA
1 AATCGCAA
43752 CCAGAGAATC
Statistics
Matches: 169, Mismatches: 8, Indels: 42
0.77 0.04 0.19
Matches are distributed among these distances:
14 42 0.25
15 3 0.02
16 7 0.04
17 6 0.04
18 4 0.02
19 94 0.56
20 13 0.08
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:43691 original size:71 final size:71
Alignment explanation
Indices: 43535--43751 Score: 227
Period size: 71 Copynumber: 3.1 Consensus size: 71
43525 GCAACGAGAG
* * * * *
43535 AATCGCAATGCGAAATGAAAATCCCAAC-ATGAAAATCGCAATACGGAAATGAAAATCGCAA--C
1 AATCGCAATGCGAAATGAAAATCGCAACGA-GAGAATCGAAATGC-GAAACGAAAATCGCAATGC
*
43597 G--A-GAG
64 GAAATGAA
* * *
43602 AATCGCAATGCGAAATGAAAATCGCAATGCGA-AAT-GAAAAT-CGCAACGAGAGAATCGCAATG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCG-AAATGCGAAACGA-A-AATCGCAATG
43664 CGAAATGAA
63 CGAAATGAA
* *
43673 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGAAATGCGAAACGAAAATCGCAATGCGA
43738 AATGAA
66 AATGAA
43744 AATCGCAA
1 AATCGCAA
43752 CCAGAGAATC
Statistics
Matches: 126, Mismatches: 12, Indels: 20
0.80 0.08 0.13
Matches are distributed among these distances:
64 5 0.04
65 3 0.02
66 14 0.11
67 28 0.22
68 2 0.02
70 1 0.01
71 59 0.47
72 7 0.06
73 7 0.06
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (71 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGAAATGCGAAACGAAAATCGCAATGCGA
AATGAA
Found at i:43762 original size:33 final size:34
Alignment explanation
Indices: 43621--43773 Score: 138
Period size: 33 Copynumber: 4.5 Consensus size: 34
43611 GCGAAATGAA
*
43621 AATCGCAATGCGAAATGAAAATCGCAA-CGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAATCCAGAG
*
43654 AATCGCAATGCGAAATGAAAATCGCAATGC-GA-
1 AATCGCAATGCGAAATGAAAATCGCAATCCAGAG
* * * * *
43686 AAT-GAAAAT-CGCAACGAGAGAATCGCAATGCGAAATGAA
1 AATCG-CAATGCGAAATGA-A-AATCGCAAT-C--CA-GAG
43725 AATCGCAATGCGAAATGAAAATCGCAA-CCAGAG
1 AATCGCAATGCGAAATGAAAATCGCAATCCAGAG
43758 AATCGCAATGCGAAAT
1 AATCGCAATGCGAAAT
43774 TATAAACGCA
Statistics
Matches: 96, Mismatches: 12, Indels: 24
0.73 0.09 0.18
Matches are distributed among these distances:
31 7 0.07
32 7 0.07
33 56 0.58
34 1 0.01
36 1 0.01
38 10 0.10
39 7 0.07
40 7 0.07
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (34 bp):
AATCGCAATGCGAAATGAAAATCGCAATCCAGAG
Found at i:43789 original size:52 final size:52
Alignment explanation
Indices: 43563--43773 Score: 395
Period size: 52 Copynumber: 4.0 Consensus size: 52
43553 AAATCCCAAC
*
43563 ATGAAAATCGCAATACGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
43616 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
43668 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
43720 ATGAAAATCGCAATGCGAAATGAAAATCGCAACCAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
43772 AT
1 AT
43774 TATAAACGCA
Statistics
Matches: 156, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
52 141 0.90
53 15 0.10
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:43870 original size:19 final size:19
Alignment explanation
Indices: 43798--43862 Score: 121
Period size: 19 Copynumber: 3.4 Consensus size: 19
43788 GATTCTCTCG
43798 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
43818 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
43837 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
43856 TTGCGAT
1 TTGCGAT
43863 AGTCATTTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
19 30 0.67
20 15 0.33
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:43988 original size:14 final size:14
Alignment explanation
Indices: 43969--44005 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
43959 CATCAATTAC
43969 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
43983 ACAAATCATCTTTT
1 ACAAATCAACTTTT
43997 ACAAATCAA
1 ACAAATCAA
44006 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:46003 original size:14 final size:14
Alignment explanation
Indices: 45984--46040 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
45974 GCGAAATGAA
*
45984 AATCGCAACGACAG
1 AATCGCAACGAAAG
45998 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
46015 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
46031 AATCGCAACG
1 AATCGCAACG
46041 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:46016 original size:33 final size:33
Alignment explanation
Indices: 45965--46057 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
45955 GCGAAACCAA
* *
45965 AATCACAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
45998 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
46031 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
46058 TGCGATTTTG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.48, C:0.22, G:0.19, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:46022 original size:19 final size:19
Alignment explanation
Indices: 45928--46062 Score: 119
Period size: 19 Copynumber: 7.6 Consensus size: 19
45918 TAGTTTACTT
* *
45928 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
45948 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
*
45967 TCACAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
45986 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
46000 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
46019 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
46033 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
46052 TCGCAATGCGA
1 TCGCAACGCGA
46063 TTTTGGTTTC
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 16 0.17
16 11 0.12
17 11 0.12
19 45 0.47
20 12 0.13
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:46080 original size:19 final size:19
Alignment explanation
Indices: 46058--46185 Score: 116
Period size: 19 Copynumber: 7.3 Consensus size: 19
46048 AAAATCGCAA
46058 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
46077 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
46091 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
46110 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
46124 TGCGA-TTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
46142 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
46161 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
46181 TGCGA
1 TGCGA
46186 AAGTAAACTA
Statistics
Matches: 88, Mismatches: 9, Indels: 23
0.73 0.08 0.19
Matches are distributed among these distances:
13 2 0.02
14 19 0.22
15 1 0.01
16 3 0.03
17 1 0.01
18 10 0.11
19 39 0.44
20 13 0.15
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.45
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:46100 original size:33 final size:33
Alignment explanation
Indices: 46058--46148 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 33
46048 AAAATCGCAA
46058 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
46091 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
46124 TGCGA-TTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
46149 TTGGTTTCGC
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 18 0.33
33 35 0.64
34 2 0.04
ACGTcount: A:0.08, C:0.19, G:0.29, T:0.45
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:46349 original size:93 final size:93
Alignment explanation
Indices: 46233--46608 Score: 727
Period size: 93 Copynumber: 4.1 Consensus size: 93
46223 ATGGATTGCA
46233 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
46297 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
46325 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
46390 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
*
46418 TTACTTTTAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
46483 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
46511 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
46576 TAGCAGAATTGGCAGCAACCGAATAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
46604 TTACT
1 TTACT
46609 AAGCAATCTA
Statistics
Matches: 280, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
92 4 0.01
93 276 0.99
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:48332 original size:14 final size:14
Alignment explanation
Indices: 48313--48366 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
48303 AAATGAAAAC
48313 CGCAACGAGAGAAT
1 CGCAACGAGAGAAT
*
48327 CGCAACGCGAAATGACAAT
1 CGCAA--CG--A-GAGAAT
48346 CGCAACGAGAGAAT
1 CGCAACGAGAGAAT
48360 CGCAACG
1 CGCAACG
48367 CGAAATGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 17 0.52
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.30
ACGTcount: A:0.41, C:0.26, G:0.26, T:0.07
Consensus pattern (14 bp):
CGCAACGAGAGAAT
Found at i:48340 original size:33 final size:33
Alignment explanation
Indices: 48302--48383 Score: 146
Period size: 33 Copynumber: 2.5 Consensus size: 33
48292 TCTTTTGGTT
*
48302 GAAATGAAAACCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
48335 GAAATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
48368 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
48384 TGCGATTTTG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.46, C:0.22, G:0.23, T:0.09
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:48348 original size:19 final size:19
Alignment explanation
Indices: 48324--48388 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 19
48314 GCAACGAGAG
*
48324 AATCGCAACGCGAAATGAC
1 AATCGCAACGCGAAATGAA
*
48343 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
48357 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
48376 AATCGCAATGCGA
1 AATCGCAACGCGA
48389 TTTTGGTTTC
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
14 10 0.26
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 22 0.58
ACGTcount: A:0.43, C:0.23, G:0.23, T:0.11
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:48419 original size:14 final size:14
Alignment explanation
Indices: 48400--48456 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
48390 TTTGGTTTCG
48400 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
48414 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
48433 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
48447 CGTTGCGATT
1 CGTTGCGATT
48457 TTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:48432 original size:33 final size:33
Alignment explanation
Indices: 48384--48464 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
48374 AAAATCGCAA
**
48384 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
48417 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
48450 TGCGATTTTCATTTC
1 TGCGATTTTCATTTC
48465 TCTCGTTGCG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.09, C:0.22, G:0.22, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:48467 original size:21 final size:21
Alignment explanation
Indices: 48441--48514 Score: 105
Period size: 21 Copynumber: 3.6 Consensus size: 21
48431 CGCGTTGCGA
48441 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
48462 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
48482 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
*
48503 TTATCTCGTTGC
1 TTCTCTCGTTGC
48515 AACTCTTCTG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 17 0.38
21 28 0.62
ACGTcount: A:0.11, C:0.26, G:0.16, T:0.47
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:48637 original size:33 final size:33
Alignment explanation
Indices: 48595--48665 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
48585 AATACTAACT
*
48595 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
48628 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
48661 TGAAA
1 TGAAA
48666 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:48899 original size:22 final size:22
Alignment explanation
Indices: 48847--48901 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
48837 TGGTTGTGAG
**
48847 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
48869 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
48891 GGATTTCTTCG
1 GGATTTCTTCG
48902 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:49073 original size:20 final size:20
Alignment explanation
Indices: 49048--49241 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
49038 CTTTAAATAT
49048 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
49068 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
49090 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
49109 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
49129 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
49149 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
49169 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
49189 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
49209 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
49229 CGCGTTGCGATTT
1 CGCGTTGCGATTT
49242 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:49235 original size:60 final size:60
Alignment explanation
Indices: 49048--49241 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
49038 CTTTAAATAT
**
49048 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
49109 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
49169 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
49229 CGCGTTGCGATTT
1 CGCGTTGCGATTT
49242 TGGAAAATCG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:49258 original size:21 final size:21
Alignment explanation
Indices: 49228--49310 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
49218 ATTTTCATAT
*
49228 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
49249 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
49270 TCGCATTGCGATTTT-AAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
49291 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
49311 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:49301 original size:42 final size:43
Alignment explanation
Indices: 49208--49306 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
49198 ATTTATGTGT
* *
49208 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGAAAAA
**
49249 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-AAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGAAA-AA
*
49291 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
49307 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGAAAAA
Found at i:49577 original size:2 final size:2
Alignment explanation
Indices: 49570--49594 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
49560 TATTATTTTC
49570 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
49595 CCATAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:49851 original size:31 final size:31
Alignment explanation
Indices: 49815--49873 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
49805 AACTTAAAAG
* *
49815 AGTTTTGCAATAGTGAAATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
*
49846 AGTTTTATAATACTGAAATTTAAATAAT
1 AGTTTTACAATACTGAAATTTAAATAAT
49874 CCATACAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.42, C:0.03, G:0.10, T:0.44
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:49922 original size:22 final size:22
Alignment explanation
Indices: 49897--50239 Score: 501
Period size: 22 Copynumber: 15.6 Consensus size: 22
49887 ACAATAAAAT
49897 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
49919 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
**
49941 TTTTAAAATAAAAT-TTTCCATA
1 TTTTAAAAT-AAATCAATCCATA
49963 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*** *
49985 TTTTAAAATAAATTTTTTCATA
1 TTTTAAAATAAATCAATCCATA
*
50007 TTTTAAAATAAATCAATCAATA
1 TTTTAAAATAAATCAATCCATA
*
50029 TTTTAAAATAAATTAATCCATA
1 TTTTAAAATAAATCAATCCATA
**
50051 TTTTAAAATAAAAT-TTTCCATA
1 TTTTAAAAT-AAATCAATCCATA
50073 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
50095 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*** *
50117 TTTTAAAATAAATTTTTTCATA
1 TTTTAAAATAAATCAATCCATA
50139 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
***
50161 TTTTAAAATAAATTTTTCCATA
1 TTTTAAAATAAATCAATCCATA
50183 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
50205 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
50227 TTTTAAAATAAAT
1 TTTTAAAATAAAT
50240 TTTAAAATAG
Statistics
Matches: 284, Mismatches: 33, Indels: 8
0.87 0.10 0.02
Matches are distributed among these distances:
21 8 0.03
22 268 0.94
23 8 0.03
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.41
Consensus pattern (22 bp):
TTTTAAAATAAATCAATCCATA
Found at i:50256 original size:11 final size:12
Alignment explanation
Indices: 50226--50265 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
50216 ATCAATCCAT
50226 ATTTTAAAATAA
1 ATTTTAAAATAA
*
50238 ATTTTAAAATAG
1 ATTTTAAAATAA
50250 A-TTT-AAAT-A
1 ATTTTAAAATAA
50259 ATTTTAA
1 ATTTTAA
50266 TTTCTTTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
9 1 0.04
10 7 0.29
11 4 0.17
12 12 0.50
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (12 bp):
ATTTTAAAATAA
Found at i:50791 original size:14 final size:15
Alignment explanation
Indices: 50605--50797 Score: 226
Period size: 15 Copynumber: 12.5 Consensus size: 15
50595 TAATAAGGTT
50605 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
50620 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
50635 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
50650 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
50665 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
* *
50680 AATTATTATAAAATA
1 ATTTATTTTAAAATA
*
50695 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
* *
50710 AATTATTATAAAATA
1 ATTTATTTTAAAATA
*
50725 AATTATTTTAAAATA
1 ATTTATTTTAAAATA
* *
50740 AATTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
50759 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
50777 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
50791 ATTTATT
1 ATTTATT
50798 AGTATGTATT
Statistics
Matches: 161, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
14 12 0.07
15 129 0.80
16 4 0.02
17 2 0.01
18 1 0.01
19 1 0.01
20 2 0.01
21 4 0.02
22 6 0.04
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:50815 original size:32 final size:32
Alignment explanation
Indices: 50777--51340 Score: 314
Period size: 32 Copynumber: 18.4 Consensus size: 32
50767 TTTTAAAATA
*
50777 ATTTATTTTAAATAATTTATTAGTATGTATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
50809 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
50841 ATTTATTTT--A-AA---A-TA-TA--GATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
50863 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
50895 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
50917 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
** **
50949 ATTTATTTTAAA-ATATGGATT-G-ATTTATT-
1 ATTTATTTTAAATA-ATTTATTAGTATGGATTG
* * * * * *
50978 ATTGTAGTTGTATGGATTGATTTATT--T-T-AAATA
1 ATT-TA-TT-T-T-AAATAATTTATTAGTATGGATTG
* * *
51011 ATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTT-TA---AATAATTTA--TT--AGTATGGATTG
51051 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
51083 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
51105 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
51137 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
51159 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
** **
51191 ATTTATTTTAAA-ATATGGATT-G-ATTTATT-
1 ATTTATTTTAAATA-ATTTATTAGTATGGATTG
*
51220 ATTATAGTTGTATAGATTAATTTATTATTGTAGTTGTATAGATTG
1 ATT-TA-TT-T-TA-AATAATTTATTA--GTA--TG----GATTG
*
51265 ATTTATTTTAAATAATTTATTAGTATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
* *
51297 ATTTATTTTAAATAATTTATTTGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
51329 ATTTATTTTAAA
1 ATTTATTTTAAA
51341 ATATGGATTG
Statistics
Matches: 420, Mismatches: 34, Indels: 156
0.69 0.06 0.26
Matches are distributed among these distances:
22 56 0.13
23 12 0.03
24 3 0.01
25 7 0.02
26 10 0.02
28 10 0.02
29 13 0.03
30 19 0.05
31 22 0.05
32 192 0.46
33 7 0.02
34 16 0.04
35 1 0.00
36 8 0.02
37 1 0.00
38 5 0.01
39 3 0.01
40 22 0.05
41 2 0.00
42 1 0.00
43 2 0.00
44 5 0.01
45 3 0.01
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (32 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTG
Found at i:50848 original size:22 final size:22
Alignment explanation
Indices: 50836--50928 Score: 78
Period size: 22 Copynumber: 3.8 Consensus size: 22
50826 TATTAGTATG
50836 GATTGATTTATTTTAAAATATA
1 GATTGATTTATTTTAAAATATA
50858 GATTGATTTATTTTAAATAATTTATTA
1 GATTGATTTATTTT-AA-AA--TA-TA
* *
50885 GTATGGATTGATTTATTTTAAAATATG
1 G-ATTGA-T---TTATTTTAAAATATA
50912 GATTGATTTATTTTAAA
1 GATTGATTTATTTTAAA
50929 TAATTTATTA
Statistics
Matches: 58, Mismatches: 3, Indels: 20
0.72 0.04 0.25
Matches are distributed among these distances:
22 24 0.41
23 2 0.03
24 2 0.03
25 1 0.02
26 6 0.10
27 5 0.09
28 6 0.10
29 1 0.02
30 2 0.03
31 2 0.03
32 7 0.12
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.52
Consensus pattern (22 bp):
GATTGATTTATTTTAAAATATA
Found at i:50869 original size:54 final size:54
Alignment explanation
Indices: 50800--50977 Score: 338
Period size: 54 Copynumber: 3.3 Consensus size: 54
50790 AATTTATTAG
*
50800 TATGTATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
*
50854 TATAGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
50908 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
50962 TATGGATTGATTTATT
1 TATGGATTGATTTATT
50978 ATTGTAGTTG
Statistics
Matches: 121, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 121 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (54 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
Found at i:51035 original size:134 final size:134
Alignment explanation
Indices: 50858--51657 Score: 587
Period size: 134 Copynumber: 5.9 Consensus size: 134
50848 TTAAAATATA
* *
50858 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTTGTATGAATTGATTTATTTT-AAATATGGATTGATTTAT
50923 TTTAAATAATTTATTAGTATGGATTGATTTATTTTA-AAATATGGATTGATTTATTATTGTAGTT
65 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAGAAATATGGATTGATTTATTATTGTA-TT
50987 -GTATG
129 AGTATG
*
50992 GATTGATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTTGTATGAATTGATTTATTTT-AAATATGGATTGATTTAT
51057 TTTAAATAATTTATTAGTATGGATTGATTTATTTTA-AAATATGGATTGATTTATTTTAAATAAT
65 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAGAAATATGGATTGATTTA--TT--AT--T
*
51121 TTATTAGTATG
124 GTATTAGTATG
* * * * * * *
51132 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTA--TT-AGTATGGATTGATT
1 GATTGATTTATTTT-AAATA---ATTTATTTGTATGAATTGATTTATTTTAAATATGGATTGATT
* * * * *** * *
51194 TATTTT-AA-AA--TA-T-GGATTGATTTA-TTATTATAGTTGTATAGATTAATTTATTATTGTA
62 TATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAGAAATATGGATTGATTTATTATTGTA
*
51252 GTT-GTATA
127 -TTAGTATG
* * *
51260 GATTGATTTATTTTAAATAATTTATTAGTAT-AGATTGATTTATTTTAAATA---ATTTATTTGT
1 GATTGATTTATTTTAAATAATTTATTTGTATGA-ATTGATTTATTTTAAATATGGATTGATTTAT
* * * * * * ***
51321 ATGAATTGATTTATTTTAAAATATGGATTGATATATTATTGTAGTTGTATGGATTGATTTATTTT
65 TTTAAATAATTTA--TT--AGTATGGATTG--AT-TTATTTTAGAAATATGGATTGATTTA--TT
*
51386 AAATAATTTATTAGTATG
121 --AT--TGTATTAGTATG
* * * * * * *
51404 GATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTA--TT-AGTATGGATTGATT
1 GATTGATTTATTTT-AAATA---ATTTATTTGTATGAATTGATTTATTTTAAATATGGATTGATT
* * * * *** *
51466 TATTTT-AA-AA--TA-T-GGATTGATTTA-TTATTGTAGTTGTATAGATTGATTTATTTTAAAT
62 TATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAGAAATATGGATTGATTTA--TT--AT
* *
51524 AATTTATTAGTATA
123 --TGTATTAGTATG
51538 GATTGATTTATTTTAAATAATTTATTTGTATGAATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTTGTATGAATTGATTTATTTT-AAATATGGATTGATTTAT
51603 TTTAAATAATTTATTAGTATGGATTGATTTATTTTA-AAATATGGATTGATTTATT
65 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAGAAATATGGATTGATTTATT
51658 TTAAATAATT
Statistics
Matches: 532, Mismatches: 77, Indels: 110
0.74 0.11 0.15
Matches are distributed among these distances:
123 1 0.00
124 24 0.05
125 1 0.00
126 3 0.01
127 8 0.02
128 23 0.04
129 2 0.00
130 19 0.04
131 1 0.00
132 4 0.01
133 12 0.02
134 222 0.42
135 3 0.01
136 8 0.02
138 37 0.07
139 5 0.01
140 64 0.12
141 13 0.02
142 4 0.01
143 2 0.00
144 39 0.07
145 8 0.02
146 3 0.01
147 1 0.00
148 24 0.05
149 1 0.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.53
Consensus pattern (134 bp):
GATTGATTTATTTTAAATAATTTATTTGTATGAATTGATTTATTTTAAATATGGATTGATTTATT
TTAAATAATTTATTAGTATGGATTGATTTATTTTAGAAATATGGATTGATTTATTATTGTATTAG
TATG
Found at i:51045 original size:22 final size:22
Alignment explanation
Indices: 51020--51062 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
51010 AATTTATTTG
51020 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
51042 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
51063 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:51057 original size:54 final size:54
Alignment explanation
Indices: 50988--51672 Score: 829
Period size: 54 Copynumber: 12.6 Consensus size: 54
50978 ATTGTAGTTG
*
50988 TATGGATTGATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
51042 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
51096 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
51150 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
* ** * * ***
51204 TATGGATTGATTTATTATT--ATAGTTGTA-TAG-ATTAATTTA-TTATTGTAGTTG
1 TATGGATTGATTTATT-TTAAATAATT-TATTAGTATGGATTGATTTATTTTA-AAA
* *
51256 TATAGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTT-AAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
* * * * * * * * ***
51309 TA---ATTTATTTGTATGAATTGATTTATTTTAAAATATGGATTGATATATTATTGTAGTTG
1 TATGGATTGATTTATTTTAAATAATTTA--TT--AGTATGGATTG--AT-TTATTTTA-AAA
51368 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
51422 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
* * * * * *
51476 TATGGATTGATTTATTATT--GTAGTTGTA-TAG-ATTGATTTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATT-TTAAATAATT-TATTAGTATGGATTGA-TTT--AT--TTTA-AAA
* * *
51534 TATAGATTGATTTATTTTAAATAATTTATTTGTATGAATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
51588 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
51642 TATGGATTGATTTATTTTAAATAATTTATTA
1 TATGGATTGATTTATTTTAAATAATTTATTA
51673 TTGTAGTTGT
Statistics
Matches: 540, Mismatches: 59, Indels: 64
0.81 0.09 0.10
Matches are distributed among these distances:
50 17 0.03
51 9 0.02
52 32 0.06
53 28 0.05
54 349 0.65
55 23 0.04
56 4 0.01
57 14 0.03
58 28 0.05
59 11 0.02
60 8 0.01
62 17 0.03
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (54 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
Found at i:51099 original size:22 final size:22
Alignment explanation
Indices: 51074--51116 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
51064 AATTTATTAG
51074 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
51096 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
51117 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:51153 original size:22 final size:22
Alignment explanation
Indices: 51128--51170 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
51118 AATTTATTAG
51128 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
51150 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
51171 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:51237 original size:26 final size:26
Alignment explanation
Indices: 51208--51271 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
51198 TTAAAATATG
51208 GATTGATTTATTATTATAGTTGTATA
1 GATTGATTTATTATTATAGTTGTATA
* *
51234 GATTAATTTATTATTGTAGTTGTATA
1 GATTGATTTATTATTATAGTTGTATA
51260 GATTGATTTATT
1 GATTGATTTATT
51272 TTAAATAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (26 bp):
GATTGATTTATTATTATAGTTGTATA
Found at i:51284 original size:14 final size:14
Alignment explanation
Indices: 51265--51318 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
51255 GTATAGATTG
51265 ATTTATTTTAAATA
1 ATTTATTTTAAATA
* *
51279 ATTTATTAGTATAGATTG
1 ATTTATT--T-TA-AATA
51297 ATTTATTTTAAATA
1 ATTTATTTTAAATA
51311 ATTTATTT
1 ATTTATTT
51319 GTATGAATTG
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 17 0.53
15 2 0.06
16 2 0.06
17 2 0.06
18 9 0.28
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:51302 original size:18 final size:17
Alignment explanation
Indices: 51253--51303 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 17
51243 ATTATTGTAG
51253 TTGTATAGATTGATTTA
1 TTGTATAGATTGATTTA
* *
51270 TT-T-TA-AATAATTTA
1 TTGTATAGATTGATTTA
51284 TTAGTATAGATTGATTTA
1 TT-GTATAGATTGATTTA
51302 TT
1 TT
51304 TTAAATAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
14 9 0.35
15 2 0.08
16 2 0.08
17 4 0.15
18 9 0.35
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (17 bp):
TTGTATAGATTGATTTA
Found at i:51332 original size:18 final size:17
Alignment explanation
Indices: 51253--51582 Score: 86
Period size: 18 Copynumber: 20.1 Consensus size: 17
51243 ATTATTGTAG
51253 TTGTATAGATTGATTTAT
1 TTGTATA-ATTGATTTAT
*
51271 TT-TA-AA-TAATTTAT
1 TTGTATAATTGATTTAT
*
51285 TAGTATAGATTGATTTAT
1 TTGTATA-ATTGATTTAT
*
51303 TT-TA-AA-TAATTTAT
1 TTGTATAATTGATTTAT
51317 TTGTATGAATTGATTTAT
1 TTGTAT-AATTGATTTAT
* **
51335 TT-TA-AAAT-ATGGA-
1 TTGTATAATTGATTTAT
*
51348 TTG-ATATATT-ATTGTAG
1 TTGTATA-ATTGATT-TAT
*
51365 TTGTATGGATTGATTTAT
1 TTGTAT-AATTGATTTAT
*
51383 TT-TA-AA-TAATTTAT
1 TTGTATAATTGATTTAT
* *
51397 TAGTATGGATTGATTTAT
1 TTGTAT-AATTGATTTAT
* *
51415 TT-TAAAATATGGATTGAT
1 TTGTATAAT-T-GATTTAT
* * * *
51433 TTATTTTAAATAATTTAT
1 TT-GTATAATTGATTTAT
* *
51451 TAGTATGGATTGATTTAT
1 TTGTAT-AATTGATTTAT
* *
51469 TT-TAAAATATGGATTGA-
1 TTGTATAAT-T-GATTTAT
* *
51486 TT-TATTATTG---TAG
1 TTGTATAATTGATTTAT
51499 TTGTATAGATTGATTTAT
1 TTGTATA-ATTGATTTAT
*
51517 TT-TA-AA-TAATTTAT
1 TTGTATAATTGATTTAT
*
51531 TAGTATAGATTGATTTAT
1 TTGTATA-ATTGATTTAT
*
51549 TT-TA-AA-TAATTTAT
1 TTGTATAATTGATTTAT
51563 TTGTATGAATTGATTTAT
1 TTGTAT-AATTGATTTAT
51581 TT
1 TT
51583 TAAAATATGG
Statistics
Matches: 222, Mismatches: 49, Indels: 82
0.63 0.14 0.23
Matches are distributed among these distances:
12 1 0.00
13 5 0.02
14 49 0.22
15 27 0.12
16 12 0.05
17 36 0.16
18 85 0.38
19 4 0.02
20 3 0.01
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (17 bp):
TTGTATAATTGATTTAT
Found at i:51383 original size:80 final size:80
Alignment explanation
Indices: 51287--51603 Score: 283
Period size: 80 Copynumber: 3.9 Consensus size: 80
51277 TAATTTATTA
*
51287 GTATAGATTGATTTATTTTAAATAATTTATTTGTATGAATTGATTTATTTTAAAATATGGATTGA
1 GTATAGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGA
51352 TATATTATTGTAGTT
66 TATATTATTGTAGTT
* *
51367 GTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA
1 GTATAGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGA
* *
51432 TTTATTTTAAATAATTTA-TT
66 --TATATT--AT--TGTAGTT
* ** ** * *
51452 AGTATGGATTGATTTATTTTAAA-ATATGGATT-G-ATTTATT-ATTGTAGTTGTATAGAT-T-G
1 -GTATAGATTGATTTATTTTAAATA-ATTTATTAGTATGAATTGATT-TA-TTTTA-AAATATGG
* * *
51511 ATTTATTTTAAATAATT-TA-TT
61 ATTGA---TATATTATTGTAGTT
*
51532 AGTATAGATTGATTTATTTTAAATAATTTATTTGTATGAATTGATTTATTTTAAAATATGGATTG
1 -GTATAGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
*
51597 ATTTATT
65 ATATATT
51604 TTAAATAATT
Statistics
Matches: 193, Mismatches: 26, Indels: 37
0.75 0.10 0.14
Matches are distributed among these distances:
79 3 0.02
80 96 0.50
81 8 0.04
82 17 0.09
83 8 0.04
84 14 0.07
85 14 0.07
86 33 0.17
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.53
Consensus pattern (80 bp):
GTATAGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGA
TATATTATTGTAGTT
Found at i:51408 original size:32 final size:32
Alignment explanation
Indices: 51367--51474 Score: 146
Period size: 32 Copynumber: 3.7 Consensus size: 32
51357 TATTGTAGTT
51367 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
51399 GTATGGATTGATTTA-TTT---TAA---A--A
1 GTATGGATTGATTTATTTTAAATAATTTATTA
51422 -TATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
51453 GTATGGATTGATTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
51475 ATATGGATTG
Statistics
Matches: 66, Mismatches: 0, Indels: 20
0.77 0.00 0.23
Matches are distributed among these distances:
22 14 0.21
23 4 0.06
25 1 0.02
26 3 0.05
28 3 0.05
29 1 0.02
31 4 0.06
32 36 0.55
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATTTATTA
Found at i:51425 original size:22 final size:22
Alignment explanation
Indices: 51400--51442 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
51390 AATTTATTAG
51400 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
51422 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
51443 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:51530 original size:14 final size:14
Alignment explanation
Indices: 51511--51564 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
51501 GTATAGATTG
51511 ATTTATTTTAAATA
1 ATTTATTTTAAATA
* *
51525 ATTTATTAGTATAGATTG
1 ATTTATT--T-TA-AATA
51543 ATTTATTTTAAATA
1 ATTTATTTTAAATA
51557 ATTTATTT
1 ATTTATTT
51565 GTATGAATTG
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 17 0.53
15 2 0.06
16 2 0.06
17 2 0.06
18 9 0.28
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:51542 original size:32 final size:31
Alignment explanation
Indices: 51501--51672 Score: 173
Period size: 32 Copynumber: 6.0 Consensus size: 31
51491 TATTGTAGTT
51501 GTATAGATTGATTTATTTTAAATAATTTATTA
1 GTAT-GATTGATTTATTTTAAATAATTTATTA
*
51533 GTATAGATTGATTTATTTTAAATAATTTATTT
1 GTAT-GATTGATTTATTTTAAATAATTTATTA
51565 GTATGAATTGATTTATTTT-AA-AA--TA-T-
1 GTATG-ATTGATTTATTTTAAATAATTTATTA
51591 G---GATTGATTTATTTTAAATAATTTATTA
1 GTATGATTGATTTATTTTAAATAATTTATTA
51619 GTATGGATTGATTTATTTT-AA-AA--TA-T-
1 GTAT-GATTGATTTATTTTAAATAATTTATTA
51645 G---GATTGATTTATTTTAAATAATTTATTA
1 GTATGATTGATTTATTTTAAATAATTTATTA
51673 TTGTAGTTGT
Statistics
Matches: 122, Mismatches: 1, Indels: 38
0.76 0.01 0.24
Matches are distributed among these distances:
22 27 0.22
23 5 0.04
24 4 0.03
26 6 0.05
27 4 0.03
28 5 0.04
30 4 0.03
31 5 0.04
32 62 0.51
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.53
Consensus pattern (31 bp):
GTATGATTGATTTATTTTAAATAATTTATTA
Found at i:51591 original size:22 final size:22
Alignment explanation
Indices: 51566--51608 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
51556 AATTTATTTG
51566 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
*
51588 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
51609 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:51645 original size:22 final size:22
Alignment explanation
Indices: 51620--51662 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
51610 AATTTATTAG
51620 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
51642 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
51663 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:51722 original size:31 final size:31
Alignment explanation
Indices: 51687--51745 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
51677 AGTTGTATGG
* *
51687 ATTATTTAAATTTCAATATTGTAAAACTAAA
1 ATTATTTAAATCTCAATATTGCAAAACTAAA
*
51718 ATTATTTAAATCTCAGTATTGCAAAACT
1 ATTATTTAAATCTCAATATTGCAAAACT
51746 CTTTTAAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATCTCAATATTGCAAAACTAAA
Found at i:53369 original size:17 final size:17
Alignment explanation
Indices: 53344--53377 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
53334 TAATGAGAAA
*
53344 AAATTAAATAAACAAAT
1 AAATAAAATAAACAAAT
*
53361 AAATAAAATAAATAAAT
1 AAATAAAATAAACAAAT
53378 TAGGATAAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (17 bp):
AAATAAAATAAACAAAT
Found at i:54188 original size:77 final size:76
Alignment explanation
Indices: 53985--54195 Score: 345
Period size: 76 Copynumber: 2.8 Consensus size: 76
53975 TCTTAAATCC
* *
53985 TAATTAAAACACTTAAAA-CTATTTAAACTAAAATACCTGAAACAAAGATAAAATATAAAAATAA
1 TAATTAAAATAC-TAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAAAAATAA
54049 TATCCTAAAACT
65 TATCCTAAAACT
* *
54061 TAATTAAAATA-TCAAAACCTGTTTAAACTAAAATACCTAAAACAATGATAAAATATAAAAATAA
1 TAATTAAAATACT-AAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAAAAATAA
54125 TATCCTAAAACT
65 TATCCTAAAACT
54137 TAATTAAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAA
1 TAATT-AAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAA
54196 TAGTTAAAAT
Statistics
Matches: 125, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
74 1 0.01
75 4 0.03
76 70 0.56
77 49 0.39
78 1 0.01
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.27
Consensus pattern (76 bp):
TAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAAAAATAAT
ATCCTAAAACT
Found at i:56070 original size:11 final size:11
Alignment explanation
Indices: 56054--56095 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
56044 AAGTTTGCTA
56054 AAAAATAAAAT
1 AAAAATAAAAT
*
56065 AAAAATAAAAC
1 AAAAATAAAAT
56076 AAAAATAAAAT
1 AAAAATAAAAT
*
56087 -GAAATAAAA
1 AAAAATAAAA
56096 AATAGAACGA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
10 8 0.29
11 20 0.71
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:56096 original size:22 final size:22
Alignment explanation
Indices: 56054--56095 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
56044 AAGTTTGCTA
56054 AAAAATAAAATAAAAATAAAAC
1 AAAAATAAAATAAAAATAAAAC
*
56076 AAAAATAAAAT-GAAATAAAA
1 AAAAATAAAATAAAAATAAAA
56096 AATAGAACGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (22 bp):
AAAAATAAAATAAAAATAAAAC
Found at i:61808 original size:17 final size:17
Alignment explanation
Indices: 61783--61816 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
61773 TAATGAGAAA
*
61783 AAATTAAATAAACAAAT
1 AAATAAAATAAACAAAT
*
61800 AAATAAAATAAATAAAT
1 AAATAAAATAAACAAAT
61817 TGGGATAAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (17 bp):
AAATAAAATAAACAAAT
Found at i:62511 original size:32 final size:32
Alignment explanation
Indices: 62474--62594 Score: 84
Period size: 32 Copynumber: 3.4 Consensus size: 32
62464 GAAACAAAGA
62474 TAAAATATAAAAATAATATCCTAAAACTTAAT
1 TAAAATATAAAAATAATATCCTAAAACTTAAT
*
62506 TAAAATATCAAAACCTGTTTAAACTAAAATACCTAAAAC--AAT
1 TAAAATAT---AA-------AAA-TAATAT-CCTAAAACTTAAT
62548 GATAAAATATAAAAATAATATCCTAAAACTTAAT
1 --TAAAATATAAAAATAATATCCTAAAACTTAAT
62582 TAAAATACTAAAA
1 TAAAATA-TAAAA
62595 CCTATTTAAA
Statistics
Matches: 70, Mismatches: 2, Indels: 33
0.67 0.02 0.31
Matches are distributed among these distances:
32 23 0.33
33 10 0.14
34 6 0.09
35 2 0.03
41 2 0.03
42 6 0.09
43 5 0.07
44 16 0.23
ACGTcount: A:0.59, C:0.12, G:0.02, T:0.28
Consensus pattern (32 bp):
TAAAATATAAAAATAATATCCTAAAACTTAAT
Found at i:62527 original size:76 final size:76
Alignment explanation
Indices: 62426--62635 Score: 352
Period size: 76 Copynumber: 2.8 Consensus size: 76
62416 TCTTAAATCC
* *
62426 TAATTAAAACACTTAAAA-CTATTTAAACTAAAATACCTGAAACAAAGATAAAATATAAAAATAA
1 TAATTAAAATAC-TAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAAAAATAA
62490 TATCCTAAAACT
65 TATCCTAAAACT
* *
62502 TAATTAAAATA-TCAAAACCTGTTTAAACTAAAATACCTAAAACAATGATAAAATATAAAAATAA
1 TAATTAAAATACT-AAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAAAAATAA
62566 TATCCTAAAACT
65 TATCCTAAAACT
62578 TAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAA
1 TAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAA
62636 TAGTTAAAAT
Statistics
Matches: 125, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
74 1 0.01
75 4 0.03
76 119 0.95
77 1 0.01
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.27
Consensus pattern (76 bp):
TAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAAAAATAAT
ATCCTAAAACT
Found at i:62542 original size:44 final size:43
Alignment explanation
Indices: 62488--62620 Score: 105
Period size: 44 Copynumber: 3.3 Consensus size: 43
62478 ATATAAAAAT
62488 AATATCCTAAAACTTAATTAAAATATCAAAACCTGTTTAAACTAA
1 AATA-CCTAAAACTTAATTAAAATATCAAAACCT-TTTAAACTAA
62533 AATACCTAAAAC--AATGATAAAATAT---AA------AAA-TAA
1 AATACCTAAAACTTAAT--TAAAATATCAAAACCTTTTAAACTAA
*
62566 TAT-CCTAAAACTTAATTAAAATA-CTAAAACCTATTTAAACTAA
1 AATACCTAAAACTTAATTAAAATATC-AAAACCT-TTTAAACTAA
62609 AATACCTAAAAC
1 AATACCTAAAAC
62621 AAAGATAAAA
Statistics
Matches: 69, Mismatches: 2, Indels: 35
0.65 0.02 0.33
Matches are distributed among these distances:
32 15 0.22
33 5 0.07
34 6 0.09
35 2 0.03
41 2 0.03
42 6 0.09
43 5 0.07
44 24 0.35
45 4 0.06
ACGTcount: A:0.56, C:0.15, G:0.02, T:0.28
Consensus pattern (43 bp):
AATACCTAAAACTTAATTAAAATATCAAAACCTTTTAAACTAA
Found at i:65046 original size:16 final size:16
Alignment explanation
Indices: 65020--65059 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 16
65010 GTTATAGTTA
65020 AAATAAAAATAATAATT
1 AAAT-AAAATAATAATT
65037 AAATAAAATAATAATT
1 AAATAAAATAATAATT
65053 AAATAAA
1 AAATAAA
65060 CAAATTAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
AAATAAAATAATAATT
Found at i:65789 original size:75 final size:75
Alignment explanation
Indices: 65700--65873 Score: 226
Period size: 76 Copynumber: 2.3 Consensus size: 75
65690 AATACCTACA
* * * * *
65700 AAAATATAATATAATATTCTAAATCCTAATTAAAATACT-AAAACCTATTTAAATTAAAATACAA
1 AAAATATAAAATAATATCCTAAAACCTAATTAAAATACTAAAAACCTATTTAAACTAAAATAAAA
65764 AGATAAAGAT
66 AGATAAAGAT
*
65774 AAAATATAAAAATAATATCCTAAAACGTAATTAAAATACTAAAAACCTATTTAAACTAAAATAAA
1 AAAATAT-AAAATAATATCCTAAAACCTAATTAAAATACTAAAAACCTATTTAAACTAAAATAAA
65839 AAGATAAA-AT
65 AAGATAAAGAT
* * *
65849 ATAATGTTTAAAATATTATCCTAAA
1 A-AA-ATATAAAATAATATCCTAAA
65874 TTTAAGTTTA
Statistics
Matches: 87, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
74 7 0.08
75 31 0.36
76 47 0.54
77 2 0.02
ACGTcount: A:0.58, C:0.09, G:0.03, T:0.30
Consensus pattern (75 bp):
AAAATATAAAATAATATCCTAAAACCTAATTAAAATACTAAAAACCTATTTAAACTAAAATAAAA
AGATAAAGAT
Found at i:67501 original size:16 final size:16
Alignment explanation
Indices: 67480--67511 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
67470 AAATCTGTTT
*
67480 TTTTTTTTTTGCACTG
1 TTTTTTTTATGCACTG
67496 TTTTTTTTATGCACTG
1 TTTTTTTTATGCACTG
67512 CATTGTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.12, G:0.12, T:0.66
Consensus pattern (16 bp):
TTTTTTTTATGCACTG
Found at i:67745 original size:20 final size:19
Alignment explanation
Indices: 67715--67753 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
67705 AAAGTTCGCT
*
67715 AAAAAATAAAACGAAAATA
1 AAAAAATAAAACAAAAATA
67734 AAAAAATAAAAACAAAAATA
1 AAAAAAT-AAAACAAAAATA
67754 TAACGAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.82, C:0.05, G:0.03, T:0.10
Consensus pattern (19 bp):
AAAAAATAAAACAAAAATA
Found at i:71043 original size:15 final size:15
Alignment explanation
Indices: 71023--71056 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
71013 TTCCTCTTGT
71023 TCTTCCTGACGTGCG
1 TCTTCCTGACGTGCG
*
71038 TCTTCCTGATGTGCG
1 TCTTCCTGACGTGCG
71053 TCTT
1 TCTT
71057 TTTCTGCTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.06, C:0.29, G:0.24, T:0.41
Consensus pattern (15 bp):
TCTTCCTGACGTGCG
Found at i:72762 original size:33 final size:33
Alignment explanation
Indices: 72714--72803 Score: 134
Period size: 33 Copynumber: 2.8 Consensus size: 33
72704 ATATATTAAA
* *
72714 ATAAAATAATGTAATATAATATATATAATATAT
1 ATAATATAATATAATATAATATATATAATATAT
72747 ATAATATAATATAATATAATATA-AT-ATATAT
1 ATAATATAATATAATATAATATATATAATATAT
72778 ATAATAT-ATATAATATAATA-ATATAA
1 ATAATATAATATAATATAATATATATAA
72804 AAATAAAAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
29 1 0.02
30 15 0.28
31 14 0.26
32 2 0.04
33 21 0.40
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (33 bp):
ATAATATAATATAATATAATATATATAATATAT
Found at i:72767 original size:38 final size:40
Alignment explanation
Indices: 72704--72797 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 40
72694 AGTTGAAAAG
* * *
72704 ATATAT-TAAAATAAAATAATGTAATAT-A-ATATATATA
1 ATATATATAATATAATATAATATAATATAATATATATATA
72741 ATATATATAATATAATATAATATAATATAATATATATATA
1 ATATATATAATATAATATAATATAATATAATATATATATA
72781 ATATATATAATATAATA
1 ATATATATAATATAATA
72798 ATATAAAAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
37 6 0.12
38 18 0.35
39 1 0.02
40 26 0.51
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (40 bp):
ATATATATAATATAATATAATATAATATAATATATATATA
Found at i:72803 original size:5 final size:5
Alignment explanation
Indices: 72714--72797 Score: 120
Period size: 5 Copynumber: 17.2 Consensus size: 5
72704 ATATATTAAA
* *
72714 ATAAA ATAAT GTAAT ATAAT AT-AT ATAAT AT-AT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
72762 ATAAT ATAAT ATATAT ATAAT AT-AT ATAAT ATAAT A
1 ATAAT ATAAT ATA-AT ATAAT ATAAT ATAAT ATAAT A
72798 ATATAAAAAT
Statistics
Matches: 72, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
4 12 0.17
5 55 0.76
6 5 0.07
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:72880 original size:15 final size:16
Alignment explanation
Indices: 72862--72892 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
72852 AAAAAATAAG
72862 AATTAAATAAA-AAAT
1 AATTAAATAAACAAAT
72877 AATTAAATAAACAAAT
1 AATTAAATAAACAAAT
72893 TAAAGAGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (16 bp):
AATTAAATAAACAAAT
Found at i:73550 original size:67 final size:73
Alignment explanation
Indices: 73479--73666 Score: 228
Period size: 67 Copynumber: 2.6 Consensus size: 73
73469 TAAAACATCT
* * *
73479 TAAATCCTAATTAAAACACTTAAAA-CTATTTAAACTAAAATAC-CT-AA-A-AAAATAT-AATA
1 TAAATCCTAATTAAAATACTTAAAACCTATTTAAACTAAAATACAATAAAGATAAAATATAAAAA
*
73538 TAATATTC
66 TAATATCC
*
73546 TAAATCCTAATTAAAATTC-TAAAACCTATTTAAACTAAAATACAAATATAAAGATAAAATATAA
1 TAAATCCTAATTAAAATACTTAAAACCTATTTAAACTAAAATAC--A-ATAAAGATAAAATATAA
73610 AAATAATATCC
63 AAATAATATCC
* * *
73621 TAAAACTTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAA
1 TAAATCCTAATTAAAATACTTAAAACCTATTTAAACTAAAATACAA
73667 ATATAAAATA
Statistics
Matches: 102, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
66 5 0.05
67 35 0.34
71 1 0.01
72 2 0.02
73 2 0.02
74 8 0.08
75 26 0.25
76 23 0.23
ACGTcount: A:0.57, C:0.13, G:0.01, T:0.30
Consensus pattern (73 bp):
TAAATCCTAATTAAAATACTTAAAACCTATTTAAACTAAAATACAATAAAGATAAAATATAAAAA
TAATATCC
Found at i:73564 original size:19 final size:19
Alignment explanation
Indices: 73542--73579 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
73532 ATAATATAAT
*
73542 ATTCTAAATCCTAATTAAA
1 ATTCTAAAACCTAATTAAA
*
73561 ATTCTAAAACCTATTTAAA
1 ATTCTAAAACCTAATTAAA
73580 CTAAAATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (19 bp):
ATTCTAAAACCTAATTAAA
Found at i:73605 original size:13 final size:13
Alignment explanation
Indices: 73582--73615 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
73572 TATTTAAACT
73582 AAAATACAAATATA
1 AAAATA-AAATATA
*
73596 AAGATAAAATATA
1 AAAATAAAATATA
73609 AAAATAA
1 AAAATAA
73616 TATCCTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (13 bp):
AAAATAAAATATA
Found at i:73624 original size:75 final size:74
Alignment explanation
Indices: 73479--73701 Score: 255
Period size: 76 Copynumber: 3.1 Consensus size: 74
73469 TAAAACATCT
* * * *
73479 TAAATCCTAATTAAAACACTTAAAA-CTATTTAAACTAAAATAC----CT-AAA-AAAATATAAT
1 TAAATCCTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAAATATAAAATAAAATATAAA
*
73537 ATAATATTC
66 ATAATATCC
*
73546 TAAATCCTAATTAAAATTCT-AAAACCTATTTAAACTAAAATACAAATATAAAGATAAAATATAA
1 TAAATCCTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAAATATAAA-ATAAAATAT-A
73610 AAATAATATCC
64 AAATAATATCC
* * * *
73621 TAAAACTTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAAATATAAAATATAATGTTTA
1 TAAATCCTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAAATATAAAATA-AA-ATATA
*
73686 AAATATTATCC
64 AAATAATATCC
73697 TAAAT
1 TAAAT
73702 TTGAGTTTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
66 4 0.03
67 36 0.27
71 1 0.01
72 2 0.02
73 1 0.01
74 7 0.05
75 30 0.23
76 49 0.37
77 2 0.02
ACGTcount: A:0.56, C:0.12, G:0.01, T:0.31
Consensus pattern (74 bp):
TAAATCCTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAAATATAAAATAAAATATAAA
ATAATATCC
Found at i:76283 original size:2 final size:2
Alignment explanation
Indices: 76276--76303 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
76266 AGCAAAAAGA
76276 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76304 TAATGGCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76404 original size:14 final size:14
Alignment explanation
Indices: 76385--76420 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
76375 TTAGTATTAA
76385 ACTTGAATAACTCG
1 ACTTGAATAACTCG
76399 ACTTGAATAACTCG
1 ACTTGAATAACTCG
*
76413 ACTCGAAT
1 ACTTGAAT
76421 TTCTTAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (14 bp):
ACTTGAATAACTCG
Found at i:77082 original size:60 final size:60
Alignment explanation
Indices: 76989--77153 Score: 160
Period size: 60 Copynumber: 2.8 Consensus size: 60
76979 AATTGGATTA
* *
76989 ATTTGGGGATGAAATTGAAAGATTTTAAAGTTTAGGGACCAATTTGGAATGAGATCCATG
1 ATTTGGGGATGAAATTGAAAGATTTTAAAGTTTAAGGACCAATTTAGAATGAGATCCATG
* *
77049 ATTTGGGGATGAAATT-TAA-ATTTTCAAAAGTTTAAGGACTAATTTAGAATGAGAGT-CAT-
1 ATTTGGGGATGAAATTGAAAGATTTT--AAAGTTTAAGGACCAATTTAGAATGAGA-TCCATG
** * * * *
77108 AGTTTAAGGATGAAATT-AGAATACTTAAAAGTTTAAGGACTAATTT
1 A-TTTGGGGATGAAATTGA-AAGATTTTAAAGTTTAAGGACCAATTT
77154 GAAATGATAG
Statistics
Matches: 90, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
58 5 0.06
59 3 0.03
60 76 0.84
61 3 0.03
62 3 0.03
ACGTcount: A:0.39, C:0.05, G:0.22, T:0.34
Consensus pattern (60 bp):
ATTTGGGGATGAAATTGAAAGATTTTAAAGTTTAAGGACCAATTTAGAATGAGATCCATG
Found at i:77113 original size:31 final size:30
Alignment explanation
Indices: 77077--77178 Score: 93
Period size: 31 Copynumber: 3.4 Consensus size: 30
77067 AATTTTCAAA
77077 AGTTTAAGGACTAATTTAGAATGAGAGTCAT
1 AGTTTAAGGACTAATTTAGAATGA-AGTCAT
* ** * *
77108 AGTTTAAGGA-TGAAATTAGAAT-ACTTAAA
1 AGTTTAAGGACT-AATTTAGAATGAAGTCAT
77137 AGTTTAAGGACTAATTT-GAAATGATAGTCAT
1 AGTTTAAGGACTAATTTAG-AATGA-AGTCAT
*
77168 ATTTTAAGGAC
1 AGTTTAAGGAC
77179 ATACGATGCA
Statistics
Matches: 55, Mismatches: 11, Indels: 10
0.72 0.14 0.13
Matches are distributed among these distances:
28 1 0.02
29 19 0.35
30 4 0.07
31 31 0.56
ACGTcount: A:0.41, C:0.06, G:0.20, T:0.33
Consensus pattern (30 bp):
AGTTTAAGGACTAATTTAGAATGAAGTCAT
Found at i:77160 original size:60 final size:60
Alignment explanation
Indices: 77015--77177 Score: 174
Period size: 60 Copynumber: 2.7 Consensus size: 60
77005 GAAAGATTTT
* * * ** *
77015 AAAGTTTAGGGACCAATTTGGAATGAGA-TCCAT-GATTTGGGGATGAAATTTAAATTTTCA
1 AAAGTTTAAGGACTAATTTGAAATGAGAGT-CATAG-TTTAAGGATGAAATTTAAATCTTCA
77075 AAAGTTTAAGGACTAATTT-AGAATGAGAGTCATAGTTTAAGGATGAAA-TTAGAATACTT-A
1 AAAGTTTAAGGACTAATTTGA-AATGAGAGTCATAGTTTAAGGATGAAATTTA-AAT-CTTCA
* *
77135 AAAGTTTAAGGACTAATTTGAAATGATAGTCATATTTTAAGGA
1 AAAGTTTAAGGACTAATTTGAAATGAGAGTCATAGTTTAAGGA
77178 CATACGATGC
Statistics
Matches: 89, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
59 3 0.03
60 81 0.91
61 5 0.06
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.33
Consensus pattern (60 bp):
AAAGTTTAAGGACTAATTTGAAATGAGAGTCATAGTTTAAGGATGAAATTTAAATCTTCA
Found at i:79424 original size:19 final size:19
Alignment explanation
Indices: 79402--79451 Score: 75
Period size: 19 Copynumber: 2.6 Consensus size: 19
79392 GCGTTTTAGA
*
79402 AAAATCGCAACGTTAAAAG
1 AAAATCGCAACGTCAAAAG
79421 AAAATCGCAACGGTCAAAAG
1 AAAATCGCAAC-GTCAAAAG
79441 -AAATCGCAACG
1 AAAATCGCAACG
79452 CGAGCTTCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 1 0.03
19 21 0.72
20 7 0.24
ACGTcount: A:0.50, C:0.20, G:0.18, T:0.12
Consensus pattern (19 bp):
AAAATCGCAACGTCAAAAG
Found at i:79529 original size:20 final size:20
Alignment explanation
Indices: 79483--79675 Score: 208
Period size: 20 Copynumber: 9.4 Consensus size: 20
79473 GATTTAAGAA
*
79483 AATCGCAATGCGATTGA-TG
1 AATCGCAATGCGATTGAGAG
79502 AATCGCAATGCGATTGAGAG
1 AATCGCAATGCGATTGAGAG
* *
79522 AGTCGCAACGCGATTTAGAAGAG
1 AATCGCAATGCGA-TT-G-AGAG
*
79545 AATCGCAATGCGACTGAGAG
1 AATCGCAATGCGATTGAGAG
* *
79565 ATTCGCAATGCGACTGAGAG
1 AATCGCAATGCGATTGAGAG
* *
79585 AATCGCAACGCGATTTAGAAGAA
1 AATCGCAATGCGA-TT-G-AGAG
*
79608 AATCGCAATGCGACTGAGAG
1 AATCGCAATGCGATTGAGAG
*
79628 AATCGCAATGCGACTGAGAG
1 AATCGCAATGCGATTGAGAG
* * *
79648 AATCGCAACGCGATTTAGAA
1 AATCGCAATGCGATTGAGAG
79668 AATCGCAA
1 AATCGCAA
79676 CGTTAAAAAG
Statistics
Matches: 149, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
19 17 0.11
20 93 0.62
21 5 0.03
22 4 0.03
23 30 0.20
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.18
Consensus pattern (20 bp):
AATCGCAATGCGATTGAGAG
Found at i:79555 original size:43 final size:40
Alignment explanation
Indices: 79483--79675 Score: 190
Period size: 43 Copynumber: 4.7 Consensus size: 40
79473 GATTTAAGAA
* * * *
79483 AATCGCAATGCGATTGA-TGAATCGCAATGCGATTGAGAG
1 AATCGCAACGCGACTGAGAGAATCGCAATGCGACTGAGAG
* *
79522 AGTCGCAACGCGATTTAGAAGAGAATCGCAATGCGACTGAGAG
1 AATCGCAACGCGA-CT-G-AGAGAATCGCAATGCGACTGAGAG
* * * * *
79565 ATTCGCAATGCGACTGAGAGAATCGCAACGCGATTTAGAAGAA
1 AATCGCAACGCGACTGAGAGAATCGCAATGCGA-CT-G-AGAG
*
79608 AATCGCAATGCGACTGAGAGAATCGCAATGCGACTGAGAG
1 AATCGCAACGCGACTGAGAGAATCGCAATGCGACTGAGAG
* * *
79648 AATCGCAACGCGATTTAGAAAATCGCAA
1 AATCGCAACGCGACTGAGAGAATCGCAA
79676 CGTTAAAAAG
Statistics
Matches: 129, Mismatches: 18, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
39 11 0.09
40 45 0.35
41 4 0.03
42 4 0.03
43 65 0.50
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.18
Consensus pattern (40 bp):
AATCGCAACGCGACTGAGAGAATCGCAATGCGACTGAGAG
Found at i:79583 original size:63 final size:62
Alignment explanation
Indices: 79465--79667 Score: 315
Period size: 63 Copynumber: 3.3 Consensus size: 62
79455 GCTTCCAAGT
* * *
79465 TCGC-ACGCGATTT--AAGAAAATCGCAATGCGATTGATGA-ATCGCAATGCGATTGAGAGAG
1 TCGCAACGCGATTTAGAAGAAAATCGCAATGCGACTGA-GAGATCGCAATGCGACTGAGAGAA
*
79524 TCGCAACGCGATTTAGAAGAGAATCGCAATGCGACTGAGAGATTCGCAATGCGACTGAGAGAA
1 TCGCAACGCGATTTAGAAGAAAATCGCAATGCGACTGAGAGA-TCGCAATGCGACTGAGAGAA
79587 TCGCAACGCGATTTAGAAGAAAATCGCAATGCGACTGAGAGAATCGCAATGCGACTGAGAGAA
1 TCGCAACGCGATTTAGAAGAAAATCGCAATGCGACTGAGAG-ATCGCAATGCGACTGAGAGAA
79650 TCGCAACGCGATTTAGAA
1 TCGCAACGCGATTTAGAA
79668 AATCGCAACG
Statistics
Matches: 133, Mismatches: 5, Indels: 8
0.91 0.03 0.05
Matches are distributed among these distances:
59 4 0.03
60 9 0.07
61 2 0.02
62 21 0.16
63 96 0.72
64 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (62 bp):
TCGCAACGCGATTTAGAAGAAAATCGCAATGCGACTGAGAGATCGCAATGCGACTGAGAGAA
Found at i:79676 original size:20 final size:20
Alignment explanation
Indices: 79362--79677 Score: 144
Period size: 20 Copynumber: 15.6 Consensus size: 20
79352 AATGACCAAT
79362 AAAATCGCAACGCGATATT--
1 AAAATCGCAACGCGAT-TTAG
*
79381 AAAATCGCAACGCGTTTTAG
1 AAAATCGCAACGCGATTTAG
** **
79401 AAAAATCGCAACGTTA-AAAG
1 -AAAATCGCAACGCGATTTAG
** *
79421 AAAATCGCAACG-G-TCAAA
1 AAAATCGCAACGCGATTTAG
* **
79439 AGAAATCGCAACGCGAGCTTCC
1 A-AAATCGCAACGCGA-TTTAG
**
79461 AAGTTCGC-ACGCGATTTAAG
1 AAAATCGCAACGCGATTT-AG
*
79481 AAAATCGCAATGCGA-TT-G
1 AAAATCGCAACGCGATTTAG
* * *
79499 ATGAATCGCAATGCGATTGAG
1 A-AAATCGCAACGCGATTTAG
* *
79520 AGAGTCGCAACGCGATTTAG
1 AAAATCGCAACGCGATTTAG
* * *
79540 AAGAGAATCGCAATGCGACTGAG
1 -A-A-AATCGCAACGCGATTTAG
* * * * *
79563 AGATTCGCAATGCGACTGAG
1 AAAATCGCAACGCGATTTAG
*
79583 AGAATCGCAACGCGATTTAGAAG
1 AAAATCGCAACGCGATTT---AG
* * *
79606 AAAATCGCAATGCGACTGAG
1 AAAATCGCAACGCGATTTAG
* * * *
79626 AGAATCGCAATGCGACTGAG
1 AAAATCGCAACGCGATTTAG
*
79646 AGAATCGCAACGCGATTTAG
1 AAAATCGCAACGCGATTTAG
79666 AAAATCGCAACG
1 AAAATCGCAACG
79678 TTAAAAAGAA
Statistics
Matches: 231, Mismatches: 47, Indels: 37
0.73 0.15 0.12
Matches are distributed among these distances:
18 7 0.03
19 53 0.23
20 114 0.49
21 25 0.11
22 2 0.01
23 30 0.13
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (20 bp):
AAAATCGCAACGCGATTTAG
Found at i:79705 original size:19 final size:20
Alignment explanation
Indices: 79664--79703 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
79654 AACGCGATTT
79664 AGAAAATCGCAACGTTAAAA
1 AGAAAATCGCAACGTTAAAA
*
79684 AGAAAATCGCAACGTCAAAA
1 AGAAAATCGCAACGTTAAAA
79704 GATAGTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.55, C:0.17, G:0.15, T:0.12
Consensus pattern (20 bp):
AGAAAATCGCAACGTTAAAA
Found at i:79780 original size:6 final size:6
Alignment explanation
Indices: 79769--79806 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
79759 GACACGTATT
79769 ACCACG ACCACG ACCACG ACCACG ACCACG ACC-CG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC
79807 GACCCGACCC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.32, C:0.53, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:79792 original size:18 final size:17
Alignment explanation
Indices: 79769--79818 Score: 70
Period size: 18 Copynumber: 3.1 Consensus size: 17
79759 GACACGTATT
79769 ACCACGACCACGACCACG
1 ACCACGACCACGACC-CG
79787 ACCACGACCACGACCCG
1 ACCACGACCACGACCCG
79804 A-C-CGACC-CGACCCG
1 ACCACGACCACGACCCG
79818 A
1 A
79819 GACGACGGCG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.25
15 5 0.16
16 1 0.03
17 3 0.09
18 15 0.47
ACGTcount: A:0.30, C:0.52, G:0.18, T:0.00
Consensus pattern (17 bp):
ACCACGACCACGACCCG
Found at i:79824 original size:15 final size:15
Alignment explanation
Indices: 79772--79824 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 15
79762 ACGTATTACC
79772 ACGACCACGACCACGA
1 ACGACCACGACC-CGA
79788 CCACGACCACGACCCGA
1 --ACGACCACGACCCGA
*
79805 CCGACC-CGACCCGA
1 ACGACCACGACCCGA
79819 GACGAC
1 -ACGAC
79825 GGCGGCGGCG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 8 0.25
15 9 0.28
17 3 0.09
18 12 0.38
ACGTcount: A:0.30, C:0.49, G:0.21, T:0.00
Consensus pattern (15 bp):
ACGACCACGACCCGA
Found at i:80502 original size:6 final size:6
Alignment explanation
Indices: 80493--80522 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
80483 GGGTCGGGTC
80493 GGTCGT GGTCGT GGTC-T GGTCGT GGTCGT G
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT G
80523 TGGTCGTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.00, C:0.17, G:0.50, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:80512 original size:11 final size:12
Alignment explanation
Indices: 80493--80522 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
80483 GGGTCGGGTC
80493 GGTCGTGGTCGT
1 GGTCGTGGTCGT
80505 GGTC-TGGTCGT
1 GGTCGTGGTCGT
80516 GGTCGTG
1 GGTCGTG
80523 TGGTCGTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.00, C:0.17, G:0.50, T:0.33
Consensus pattern (12 bp):
GGTCGTGGTCGT
Found at i:80515 original size:17 final size:16
Alignment explanation
Indices: 80484--80522 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
80474 TCTCTCTCGG
80484 GGTCG-GGTCGGTCGT
1 GGTCGTGGTCGGTCGT
80499 GGTCGTGGTCTGGTCGT
1 GGTCGTGGTC-GGTCGT
80516 GGTCGTG
1 GGTCGTG
80523 TGGTCGTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 5 0.23
16 4 0.18
17 13 0.59
ACGTcount: A:0.00, C:0.18, G:0.51, T:0.31
Consensus pattern (16 bp):
GGTCGTGGTCGGTCGT
Done.