Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008545.1 Hibiscus syriacus cultivar Beakdansim tig00111434_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65153

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2288--2371
23
3.7
23
86
0
123
17
25
27
29
1.98
9162--9220
23
2.6
23
88
0
91
18
27
27
27
1.98
9163--9230
23
3.0
23
86
0
73
20
25
25
29
1.99
10756--10837
35
2.3
35
97
0
155
25
28
21
24
1.99
10810--10971
63
2.6
63
81
6
186
23
24
21
30
1.99
12316--12356
18
2.3
18
91
0
64
34
14
0
51
1.43
15071--15170
44
2.3
44
84
3
130
23
21
22
34
1.97
25417--25485
5
13.8
5
95
0
93
4
40
36
18
1.71
25483--25531
6
8.2
6
95
0
80
4
16
48
30
1.64
31394--31453
5
12.0
5
94
0
66
6
40
36
16
1.75
31455--31509
6
9.2
6
95
0
101
1
16
49
32
1.56
31784--31838
22
2.5
22
78
0
65
29
7
23
40
1.81
40954--41000
24
2.0
23
83
4
58
31
0
8
59
1.27
43297--43371
23
3.3
22
70
15
71
40
8
20
32
1.81
43279--43383
46
2.3
46
96
1
194
42
7
18
31
1.78
43545--43591
21
2.2
21
84
0
67
27
23
25
23
2.00
43575--43608
17
2.1
16
89
10
52
20
17
32
29
1.96
50007--50099
46
2.0
46
89
0
141
44
5
18
32
1.72
50019--50100
23
3.6
23
71
15
71
43
6
18
31
1.74
50263--50314
21
2.5
21
93
0
86
26
28
23
21
1.99
51442--51542
21
4.8
21
82
0
103
27
30
17
23
1.97
54740--54831
31
3.0
30
68
17
73
29
26
4
40
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54692--54831
60
2.3
60
80
7
160
30
24
3
41
1.72
61520--61635
3
38.0
3
80
6
126
58
2
0
38
1.12
61767--62325
76
7.4
76
94
2
977
34
21
21
22
1.97
62987--63041
22
2.5
23
82
8
69
36
16
14
32
1.89
63396--63569
55
3.3
54
84
4
219
23
20
15
40
1.90

Tables:   1

The End!