genome.fa.s8546.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008546.1 Hibiscus syriacus cultivar Beakdansim tig00111435_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125781

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8267--8313	24	2.0	23	83	4	58	31	0	8	59	1.27
10617--10691	23	3.3	22	70	15	71	40	8	20	32	1.81
10599--10703	46	2.3	46	96	1	194	42	7	18	31	1.78
10865--10911	21	2.2	21	84	0	67	27	23	25	23	2.00
10895--10928	17	2.1	16	89	10	52	20	17	32	29	1.96
17327--17419	46	2.0	46	89	0	141	44	5	18	32	1.72
17339--17420	23	3.6	23	71	15	71	43	6	18	31	1.74
17583--17634	21	2.5	21	93	0	86	26	28	23	21	1.99
18767--18867	21	4.8	21	82	0	103	27	30	17	23	1.97
22076--22167	31	3.0	30	68	17	73	29	26	4	40	1.75
22028--22167	60	2.3	60	80	7	160	30	24	3	41	1.72
28895--29010	3	39.0	3	82	5	146	60	2	0	37	1.11
29142--29705	76	7.4	76	95	1	1022	34	21	21	22	1.97
29142--29705	153	3.7	152	97	0	1031	34	21	21	22	1.97
30371--30425	22	2.5	22	84	0	74	36	16	14	32	1.89
30789--30961	54	3.3	54	86	2	226	23	20	15	40	1.91
32401--32684	92	3.1	92	94	2	473	37	20	14	28	1.91
34744--34809	8	8.4	8	77	15	57	0	7	7	84	0.77
35102--35147	2	23.0	2	100	0	92	50	0	0	50	1.00
41694--41805	3	37.0	3	85	1	152	59	2	0	37	1.11
48271--48304	17	2.1	16	88	5	50	50	0	0	50	1.00
62341--62550	65	3.2	64	79	12	216	30	24	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62522--62570	19	2.6	19	84	9	57	24	28	20	26	1.99
62391--62570	65	2.8	64	79	13	190	28	25	19	27	1.99
75626--75732	45	2.4	45	87	4	144	28	21	20	28	1.98
78823--78956	67	2.0	66	98	1	259	39	17	20	21	1.92
88298--88322	13	1.9	13	100	0	50	32	32	8	28	1.86
91847--92240	21	19.3	21	81	7	341	25	20	18	35	1.95
91847--92000	41	3.8	40	88	1	182	31	19	20	28	1.97
91930--92240	41	7.6	41	84	5	339	22	21	17	38	1.93
91847--92240	82	4.8	81	80	7	352	25	20	18	35	1.95
93104--93157	24	2.2	24	90	0	81	22	18	18	40	1.91
95669--95723	20	2.8	20	83	2	67	40	21	20	18	1.92
95714--95801	14	5.6	14	70	23	59	45	19	23	11	1.83
95696--95823	33	3.8	33	93	1	211	46	18	22	11	1.81
95696--95787	19	5.4	19	68	24	78	46	18	21	13	1.82
95828--95903	19	4.0	19	91	3	93	13	17	23	46	1.83
95833--95911	38	2.1	38	83	4	97	13	17	22	45	1.84
95842--95903	19	3.3	19	93	4	99	12	19	22	45	1.84
96011--96047	14	2.6	14	91	0	65	45	21	0	32	1.52
97918--97978	19	3.5	19	74	21	78	44	22	22	9	1.82
97918--97997	33	2.4	33	95	0	142	46	23	21	8	1.79
98021--98058	20	1.9	20	94	0	67	7	15	26	50	1.72
98042--98131	33	2.5	36	84	10	105	10	21	21	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98011--98136	19	6.8	19	79	12	118	11	19	22	47	1.80
98225--98595	93	4.1	93	91	5	562	47	18	12	21	1.81
100274--100391	19	6.1	19	89	3	173	46	18	22	12	1.82
100994--101204	20	10.6	20	81	6	259	21	19	18	40	1.92
100996--101204	61	3.5	58	85	5	269	21	20	18	40	1.92
100994--101204	81	2.7	81	91	2	322	21	19	18	40	1.92
101201--101246	21	2.2	21	84	7	58	36	17	26	19	1.94
104582--104635	28	2.0	28	82	10	67	57	12	9	20	1.63
105740--105781	22	2.0	22	85	4	59	16	9	7	66	1.42
110311--110443	64	2.1	64	97	0	248	26	8	10	54	1.62

Tables:   1

The End!