genome.fa.s8547.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008547.1 Hibiscus syriacus cultivar Beakdansim tig00111438_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134269

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156--333	52	3.3	52	78	8	144	29	25	14	30	1.95
259--608	50	6.9	51	91	4	523	27	27	15	29	1.96
1911--2023	46	2.5	47	79	12	128	4	22	1	71	1.13
1911--2023	26	4.2	27	73	13	83	4	22	1	71	1.13
1913--2008	18	5.3	18	68	25	60	5	20	2	71	1.15
1959--2009	21	2.4	21	77	9	59	5	15	3	74	1.16
1913--2030	19	6.5	18	67	20	68	5	21	1	72	1.13
1981--2029	18	2.7	19	84	12	59	6	18	2	73	1.14
11650--11747	44	2.1	46	90	7	155	39	20	10	29	1.85
27024--27087	21	3.1	21	75	4	76	17	18	26	37	1.93
27076--27128	22	2.4	22	93	0	97	16	16	28	37	1.91
27241--27277	6	6.5	6	96	3	60	29	54	16	0	1.43
27777--27801	12	2.1	12	100	0	50	16	8	40	36	1.77
27893--27966	20	3.7	20	74	3	85	39	22	21	16	1.92
28273--28425	60	2.5	61	77	11	147	41	4	22	31	1.74
30407--30584	88	2.0	93	81	9	217	21	19	20	38	1.94
32596--32633	3	12.3	3	88	5	58	28	0	0	71	0.87
32593--32641	9	6.1	8	76	23	50	28	0	2	69	1.00
32598--32645	22	2.2	22	85	7	62	31	0	2	66	1.03
39021--39069	12	3.9	12	86	5	62	71	12	12	4	1.28
38993--39071	24	3.2	24	75	10	70	67	10	20	2	1.32
40244--40289	16	2.9	16	83	0	56	47	28	2	21	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40648--40753	34	3.1	34	76	10	90	33	16	13	36	1.87
40744--40933	105	1.8	105	82	4	249	31	21	11	35	1.88
40944--41047	36	3.0	36	83	4	133	32	19	11	36	1.87
41288--41522	29	8.5	27	86	6	258	28	10	14	47	1.77
41287--41498	56	3.8	56	86	6	286	28	10	14	45	1.79
41288--41498	29	7.5	28	89	3	275	28	10	14	45	1.79
41292--41522	83	2.8	82	81	9	279	28	10	14	46	1.77
41610--41678	28	2.5	28	90	4	104	34	7	14	43	1.73
41629--41794	68	2.5	65	88	4	242	30	11	11	46	1.75
41571--41746	96	1.9	94	85	4	246	33	10	13	42	1.78
41895--42118	120	1.9	119	81	8	276	30	14	12	42	1.83
42016--42140	64	2.0	63	88	1	187	31	14	11	43	1.80
42122--42201	40	2.0	40	87	4	117	31	20	11	37	1.87
42577--42672	36	2.7	34	76	7	93	30	16	12	40	1.86
42598--42672	35	2.1	36	85	7	100	36	18	10	34	1.86
42830--42926	28	3.4	28	79	12	90	25	17	13	43	1.86
43079--43191	40	2.7	41	82	11	142	23	36	19	21	1.95
42934--43198	134	2.0	134	92	1	442	25	34	19	20	1.96
43496--43533	3	12.3	3	88	5	58	28	0	0	71	0.87
43493--43541	9	6.1	8	76	23	50	28	0	2	69	1.00
43498--43545	22	2.2	22	85	7	62	31	0	2	66	1.03
56515--56561	23	2.0	24	83	4	60	59	8	2	29	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57215--57255	8	5.2	8	82	5	57	34	0	29	36	1.58
57328--57826	128	3.9	128	95	0	883	22	25	20	31	1.98
58227--58399	34	5.0	34	78	10	197	38	2	3	56	1.29
58227--58399	73	2.5	71	92	5	282	38	2	3	56	1.29
58344--58368	6	4.2	6	100	0	50	16	0	0	84	0.63
58246--58396	39	4.1	39	73	18	144	36	1	3	58	1.23
58918--59011	21	4.5	21	92	5	145	20	27	34	18	1.95
59015--59062	21	2.3	21	85	0	60	22	12	39	25	1.89
60803--60846	19	2.4	19	81	7	56	54	2	0	43	1.12
60803--60877	19	4.3	18	72	23	54	60	2	0	37	1.11
60818--60889	34	2.1	34	82	10	85	63	5	0	30	1.17
66872--66918	23	2.0	25	84	16	64	61	2	10	25	1.39
67611--67649	16	2.5	16	87	4	53	53	0	0	46	1.00
80791--80864	31	2.5	31	86	4	98	39	2	5	52	1.38
81190--81244	28	1.9	29	82	10	69	34	20	10	34	1.87
82179--82231	21	2.5	21	96	0	97	35	15	9	39	1.79
81994--82428	221	2.0	220	85	3	588	30	16	14	38	1.89
82723--82872	80	1.9	79	83	5	194	46	15	11	26	1.79
82760--83019	125	2.1	125	83	1	333	44	12	10	33	1.75
84517--84561	22	2.0	24	86	8	67	57	2	0	40	1.11
91849--91895	3	15.7	3	82	8	60	36	0	0	63	0.94
91842--91893	12	4.6	11	75	20	54	34	0	1	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93169--93198	15	2.0	15	93	0	51	36	3	6	53	1.44
96447--96485	19	2.1	19	95	0	69	20	38	15	25	1.92
96405--96593	65	2.9	64	80	7	213	31	24	15	28	1.96
96384--96613	64	3.6	64	80	6	216	30	25	16	27	1.97
102379--102434	22	2.7	21	83	10	62	30	23	17	28	1.97
103961--104004	21	2.1	21	86	0	61	9	36	15	38	1.80
105044--105082	19	2.1	19	95	0	69	20	38	15	25	1.92
104981--105189	65	3.2	64	82	11	230	30	25	16	27	1.97
104981--105210	64	3.6	64	81	6	234	29	26	17	26	1.97
109377--109431	9	5.7	9	76	16	56	85	1	12	0	0.68
109362--109429	16	4.2	16	81	7	75	80	1	17	0	0.78
109361--109431	23	3.0	23	83	10	81	80	2	16	0	0.83
109373--109438	9	7.9	9	73	17	54	81	1	16	0	0.76
114645--115207	113	5.0	113	90	2	812	36	15	20	27	1.92
116043--116082	10	3.8	11	93	6	66	17	20	25	37	1.94
116043--116089	21	2.3	20	89	7	69	17	21	27	34	1.95
116092--116133	17	2.4	18	96	4	77	16	50	23	9	1.75
116093--116137	13	3.2	13	77	22	54	17	44	24	13	1.85
116169--116236	29	2.3	29	82	0	82	29	7	23	39	1.82
123296--123342	22	2.1	23	96	4	87	17	51	23	8	1.72
123378--123445	29	2.3	29	84	0	91	29	5	25	39	1.79
125070--125119	3	16.7	3	83	8	66	36	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125092--125124	15	2.1	16	94	5	59	45	3	0	51	1.16
126403--126432	15	2.0	15	100	0	60	40	0	6	53	1.27
127863--127947	7	12.3	7	75	9	50	42	25	0	31	1.56
127865--127937	21	3.5	21	71	15	71	46	20	0	32	1.51
129165--129240	35	2.2	35	83	2	91	32	15	19	31	1.94
129185--129260	23	3.3	23	84	0	89	32	13	21	32	1.91
129183--129262	35	2.3	35	82	6	92	33	12	20	33	1.90
130416--130457	21	2.0	21	86	9	59	35	0	0	64	0.94
133764--133804	9	4.2	9	85	14	55	75	0	24	0	0.80

Tables:   1

The End!