genome.fa.s855.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000855.1 Hibiscus syriacus cultivar Beakdansim tig00001658_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96552

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397--440	17	2.6	17	77	0	52	59	0	0	40	0.98
1995--2116	60	2.0	61	84	6	158	38	5	24	31	1.79
2016--2155	60	2.3	60	81	2	156	44	4	20	31	1.70
6484--6526	22	1.9	22	85	4	59	34	9	4	51	1.55
9583--9610	10	2.8	10	100	0	56	39	10	0	50	1.37
10516--10566	26	2.0	25	84	3	66	41	0	1	56	1.10
12279--12370	46	2.0	46	97	0	175	42	2	5	50	1.37
21869--21916	18	2.8	16	76	14	51	33	2	0	64	1.05
26253--26415	79	2.1	79	94	0	281	23	12	13	50	1.75
31053--31143	31	2.8	32	81	5	112	45	14	8	31	1.75
31457--31546	28	3.2	28	70	16	69	27	5	0	66	1.13
35354--36211	241	3.6	241	92	1	1420	31	25	19	23	1.98
36596--36644	5	10.0	5	83	16	59	34	0	0	65	0.93
36596--36650	3	19.7	3	75	20	57	32	0	0	67	0.91
36600--36651	20	2.7	19	85	11	70	32	0	0	67	0.91
36699--36764	33	2.0	33	96	0	123	40	21	9	28	1.83
36699--36779	33	2.5	33	89	4	110	38	19	12	29	1.89
37116--37199	40	2.0	44	81	9	104	29	2	0	67	1.03
37139--37201	14	4.6	15	77	22	52	33	0	0	66	0.92
55256--55340	34	2.5	34	96	0	152	15	24	24	35	1.94
55362--55415	22	2.5	22	90	0	90	33	18	35	12	1.89
55445--55488	23	1.9	23	100	0	88	9	25	40	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55442--55495	23	2.4	22	84	9	81	11	24	42	22	1.85
55945--56302	172	2.1	173	90	2	569	39	5	18	37	1.73
58546--59010	14	33.9	14	67	19	123	50	5	3	41	1.41
58541--59010	84	5.8	81	81	9	473	50	5	3	40	1.42
58583--58959	37	10.0	37	81	13	403	50	6	3	40	1.44
58608--59010	23	17.3	23	72	17	171	50	5	3	40	1.43
58541--59010	74	6.2	73	80	12	401	50	5	3	40	1.42
58552--58975	8	56.8	8	71	19	267	50	6	3	40	1.43
62355--62401	18	2.6	18	100	0	94	23	36	14	25	1.93
64151--64183	17	1.9	17	93	0	57	66	0	0	33	0.92
64254--64336	16	5.2	16	71	17	57	43	2	1	53	1.21
66306--66359	20	2.8	20	80	8	58	48	1	0	50	1.11
66310--66367	20	2.6	22	73	15	57	46	1	0	51	1.11
66588--66618	15	2.1	15	93	0	53	29	0	0	70	0.87
66591--66621	16	1.9	16	93	0	53	29	0	0	70	0.87
75810--75860	16	3.2	16	80	2	59	21	17	17	43	1.88
88645--88789	60	2.4	61	82	4	188	33	21	4	40	1.72
88644--88830	60	3.1	59	80	5	171	33	22	4	39	1.74
88903--89023	60	2.0	61	82	4	147	57	6	5	30	1.48
95079--95104	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1

The End!