Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008551.1 Hibiscus syriacus cultivar Beakdansim tig00111446_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121184

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2062--2122
31
2.0
30
83
3
77
31
26
1
40
1.66
9710--9766
5
11.0
5
78
17
55
3
15
1
78
0.96
9698--9756
25
2.3
26
75
16
61
3
15
5
76
1.10
11242--11367
47
2.8
45
85
8
166
30
22
7
39
1.82
15368--15493
47
2.8
46
85
5
159
30
23
8
38
1.85
19999--20040
13
3.0
14
86
13
68
14
21
0
64
1.29
19999--20038
9
4.3
9
82
17
55
12
22
0
65
1.26
24937--24970
11
3.1
11
82
0
50
70
5
8
14
1.31
29158--29197
13
2.9
15
82
17
59
0
10
12
77
0.99
29526--29570
11
4.1
11
82
5
56
73
6
8
11
1.25
37958--38005
16
2.9
16
87
6
60
66
0
18
14
1.25
43638--43688
24
2.1
24
85
0
66
33
17
11
37
1.86
48206--48267
31
2.0
31
84
6
81
59
0
22
17
1.37
48691--48745
23
2.2
25
78
21
62
61
0
23
14
1.33
48694--48737
15
3.1
14
81
18
56
63
0
27
9
1.24
52433--52472
21
1.9
21
84
0
53
35
20
7
37
1.81
53808--53844
12
3.2
12
77
14
51
43
8
32
16
1.77
62916--62975
22
2.8
22
80
9
63
76
10
13
0
1.01
62931--62969
12
3.4
12
82
13
55
71
10
17
0
1.12
69572--69610
17
2.2
17
95
4
69
79
10
10
0
0.94
71893--71932
21
1.9
21
85
10
55
62
0
17
20
1.33
76122--76294
90
1.9
89
94
1
301
38
10
6
44
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77368--77407
21
1.9
21
85
10
55
62
0
17
20
1.33
78570--78618
25
1.9
25
87
4
71
46
2
14
36
1.56
89944--89983
20
2.0
20
85
0
53
15
27
2
55
1.53
90180--90224
16
2.8
16
80
10
56
80
6
13
0
0.91
106866--106924
16
3.5
16
80
19
59
32
15
11
40
1.83
106931--106983
17
3.1
17
81
10
72
39
13
5
41
1.68
111612--111646
18
1.9
18
100
0
70
11
31
5
51
1.61
113821--113860
12
3.2
12
85
3
53
37
35
5
22
1.76
114177--114223
5
9.8
5
78
17
55
80
0
19
0
0.70
114177--114227
24
2.1
25
88
3
77
80
0
19
0
0.71

Tables:   1

The End!