genome.fa.s8555.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008555.1 Hibiscus syriacus cultivar Beakdansim tig00111460_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  290565

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714--774	22	2.8	21	80	9	68	80	9	6	3	1.00
717--764	15	3.3	15	82	8	55	79	8	8	4	1.06
733--766	13	2.5	13	95	4	59	79	8	11	0	0.94
748--785	20	1.9	20	88	0	58	78	10	10	0	0.95
6464--6534	17	4.2	16	79	13	72	39	14	8	38	1.76
7793--7854	30	2.1	30	93	0	106	25	35	0	38	1.56
8906--9329	222	1.9	222	93	0	731	23	28	12	35	1.92
9770--9806	18	2.1	18	85	14	51	37	18	8	35	1.81
14103--14163	21	2.9	21	92	0	104	27	27	19	24	1.99
14439--14627	44	4.3	44	92	0	297	34	20	6	38	1.78
14776--15336	59	9.5	59	76	8	432	29	22	11	36	1.89
14831--15334	177	2.8	177	87	4	624	29	22	10	37	1.88
20536--20575	21	1.9	21	94	0	71	25	27	20	27	1.99
20964--21155	89	2.2	89	88	3	280	32	22	6	38	1.79
20964--21153	44	4.3	44	87	4	274	32	22	6	38	1.79
21136--21185	24	2.1	24	96	0	91	36	16	2	46	1.58
25762--25804	11	3.8	11	75	6	50	6	16	2	74	1.14
27295--27353	13	4.8	12	76	17	59	27	40	0	32	1.56
27294--27409	35	3.3	35	91	1	187	26	37	2	32	1.70
29803--29931	59	2.2	59	85	0	168	28	25	18	27	1.98
30621--30684	29	2.2	29	85	2	83	32	23	6	37	1.80
38096--38159	29	2.2	30	80	5	76	34	23	4	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40286--40346	19	3.2	18	93	4	95	18	21	37	22	1.94
47756--47800	20	2.2	20	88	0	63	8	11	6	73	1.25
50764--50812	19	2.5	20	78	21	59	67	0	8	24	1.18
52053--52100	26	2.0	25	84	12	64	39	12	8	39	1.73
54987--55049	10	6.9	9	71	21	51	1	20	3	74	1.04
55004--55048	19	2.5	18	85	7	56	2	20	4	73	1.11
54971--55050	18	4.6	18	68	20	62	3	18	5	72	1.18
55304--55352	19	2.5	20	78	21	59	67	0	8	24	1.18
56652--56694	15	2.8	16	78	3	52	55	4	9	30	1.52
61965--62018	26	2.2	24	86	6	72	62	11	18	7	1.50
71957--71994	18	2.2	17	90	4	58	0	7	10	81	0.87
74164--74203	19	2.0	20	85	4	55	22	15	0	62	1.32
77571--77627	21	2.8	20	81	10	71	40	10	12	36	1.77
77571--77622	19	2.6	21	87	6	72	44	7	13	34	1.72
80830--80856	8	3.4	8	100	0	54	0	14	0	85	0.61
81589--81640	19	2.6	21	90	6	81	46	7	13	32	1.72
86708--86736	13	2.1	14	93	6	51	44	10	24	20	1.82
94160--94251	23	4.1	23	83	9	93	45	2	5	46	1.38
94181--94251	33	2.2	33	85	14	94	47	1	2	47	1.25
94181--94262	2	41.0	2	79	18	91	47	3	2	46	1.33
94449--94590	70	2.0	71	97	2	268	28	19	22	29	1.98
98961--99021	27	2.3	27	86	8	88	75	14	9	0	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98961--99028	9	7.6	9	80	6	66	73	16	10	0	1.09
106450--106491	22	1.9	22	85	9	59	28	7	11	52	1.64
106558--107437	439	2.0	439	97	1	1676	31	21	19	28	1.97
113552--113582	15	2.1	15	93	0	53	19	22	0	58	1.40
114361--114400	15	2.6	16	84	8	55	60	0	22	17	1.37
114540--114652	35	3.2	35	82	3	129	26	4	38	30	1.76
114553--114657	35	3.0	35	87	1	147	26	4	39	29	1.77
115930--115969	17	2.4	17	83	8	55	47	5	15	32	1.66
117140--117202	32	2.0	32	81	12	76	60	0	25	14	1.34
117363--117405	13	3.2	14	83	6	54	39	0	37	23	1.55
121156--121191	14	2.6	14	91	4	56	27	0	47	25	1.52
121156--121194	13	2.9	13	85	7	51	33	0	43	23	1.54
126297--126337	17	2.5	17	88	4	57	43	7	14	34	1.73
126293--126337	16	2.8	15	83	10	54	44	6	13	35	1.70
128481--128505	10	2.5	10	100	0	50	24	12	28	36	1.91
136320--136521	101	2.0	100	89	0	305	26	26	12	34	1.92
136635--136679	23	2.0	23	90	0	72	60	15	13	11	1.60
140872--140928	17	3.3	17	77	2	60	47	5	14	33	1.66
148488--148545	13	4.7	13	72	12	50	29	0	39	31	1.57
148441--148568	36	3.6	36	84	1	170	29	3	37	29	1.73
152573--152617	15	3.3	15	76	23	62	0	4	15	80	0.87
152573--152621	26	1.9	25	95	4	89	0	4	14	81	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156484--156522	17	2.3	17	90	0	60	46	7	12	33	1.71
171295--171327	17	1.9	17	88	11	50	33	36	3	27	1.72
178185--178213	15	1.9	15	100	0	58	27	27	0	44	1.54
184561--184629	30	2.3	31	82	9	90	63	0	23	13	1.29
185567--185609	19	2.2	20	87	4	61	48	6	9	34	1.62
185972--186083	35	3.2	35	88	1	143	31	2	37	28	1.71
186824--186935	35	3.2	35	83	1	125	33	2	36	27	1.71
191147--191191	23	2.0	23	86	0	63	11	13	13	62	1.55
201674--201785	35	3.2	35	88	1	152	32	3	35	28	1.74
208310--208361	6	8.7	6	83	12	63	84	0	15	0	0.62
208316--208361	15	3.1	14	84	9	65	84	0	15	0	0.62
208301--208361	29	2.0	31	87	12	92	81	3	14	0	0.80
212946--212992	19	2.6	18	83	12	60	65	0	14	19	1.26
220429--220492	19	3.3	20	85	10	73	3	18	3	75	1.08
224475--224535	11	6.2	9	74	22	52	0	18	1	80	0.80
224478--224523	12	4.2	11	81	10	58	0	19	2	78	0.86
224483--224537	19	2.9	19	85	15	71	0	18	3	78	0.90
224786--224832	19	2.6	18	83	12	60	65	0	14	19	1.26
226681--226723	15	2.9	15	96	0	77	20	30	0	48	1.50
243789--244041	91	2.8	91	90	0	398	30	21	25	22	1.99
244151--244194	18	2.4	18	96	0	79	18	13	34	34	1.90
249011--249065	24	2.3	24	75	9	60	65	10	14	9	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254247--254472	91	2.5	91	88	0	337	30	22	26	20	1.98
255320--255355	18	2.0	18	89	10	56	0	22	0	77	0.76
255344--255395	25	2.1	25	85	0	68	15	13	15	55	1.69
258289--258335	17	2.8	17	90	6	69	44	6	10	38	1.65
267318--267360	19	2.2	19	87	4	59	4	6	11	76	1.13
267325--267361	19	1.9	19	94	0	65	2	8	8	81	0.97
268730--268772	20	2.2	20	87	4	61	34	9	6	48	1.62
269108--269136	15	1.9	15	100	0	58	20	41	0	37	1.53
275505--275569	12	5.5	12	83	7	71	0	9	10	80	0.92
288586--288640	23	2.3	25	81	6	69	60	14	18	7	1.57

Tables:   1

The End!