Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008557.1 Hibiscus syriacus cultivar Beakdansim tig00111462_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126703

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
584--728
69
2.1
68
83
8
177
31
2
35
30
1.72
584--728
34
4.2
35
84
9
165
31
2
35
30
1.72
4696--4747
20
2.7
19
76
5
52
3
11
3
80
0.97
4933--4984
26
2.0
26
82
17
63
57
0
19
23
1.40
5136--5254
35
3.4
35
83
2
148
31
4
35
28
1.76
8355--8384
13
2.4
13
94
5
53
43
0
30
26
1.55
12582--12623
20
2.2
19
86
4
57
33
9
7
50
1.62
17728--17761
14
2.4
14
90
9
52
79
2
17
0
0.86
27119--27158
17
2.4
17
86
0
53
32
15
12
40
1.84
27165--27223
17
3.5
17
68
13
50
28
15
8
47
1.74
38614--38729
35
3.3
34
87
3
160
30
3
37
28
1.74
38671--38735
13
5.2
13
74
12
55
33
3
36
26
1.72
39073--39123
19
2.6
20
84
6
68
45
5
11
37
1.65
42063--42124
30
2.1
30
81
6
72
64
0
22
12
1.27
42711--42826
35
3.3
35
90
1
178
32
0
37
28
1.63
43169--43219
19
2.6
20
87
3
68
45
5
15
33
1.71
45138--45170
2
16.5
2
93
0
57
48
3
0
48
1.17
50148--50187
20
1.9
20
85
10
53
32
7
32
27
1.85
51417--51446
13
2.4
13
94
5
53
26
30
0
43
1.55
55588--55627
20
1.9
20
85
10
53
32
7
32
27
1.85
57126--57167
22
1.9
22
95
0
75
54
23
4
16
1.61
61790--61849
13
4.5
13
79
6
66
1
20
1
76
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61791--61847
19
3.1
18
78
16
55
1
21
1
75
0.98
78635--78691
10
6.0
9
76
11
60
82
3
10
3
0.91
78633--78685
17
3.1
17
84
15
65
81
5
9
3
0.98
78635--78686
19
2.7
19
84
0
68
82
3
9
3
0.91
78642--78707
26
2.5
27
76
11
73
78
4
10
6
1.06
80044--80091
21
2.3
21
96
0
87
39
25
18
16
1.91
82181--82256
35
2.2
35
85
0
98
28
32
3
34
1.76
92887--92929
20
2.2
20
83
8
52
44
11
23
20
1.84
96017--96071
23
2.3
23
84
9
67
67
16
7
9
1.40
96065--96090
5
5.2
5
100
0
52
80
0
19
0
0.71
98930--98964
15
2.4
15
90
4
54
5
17
5
71
1.25
102488--102526
21
1.9
20
89
5
60
23
10
0
66
1.22
102485--102534
21
2.4
21
78
18
59
20
14
0
66
1.26
115410--115457
8
5.9
8
88
11
71
0
22
2
75
0.91
115400--115452
24
2.2
23
81
15
63
0
22
1
75
0.90
115400--115455
13
4.7
12
78
22
64
0
23
1
75
0.90
120857--120891
14
2.5
14
90
9
54
0
17
2
80
0.84
123059--123084
5
5.2
5
100
0
52
80
0
19
0
0.71

Tables:   1

The End!