Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008558.1 Hibiscus syriacus cultivar Beakdansim tig00111463_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2950132
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 14
Found at i:885230 original size:19 final size:19
Alignment explanation
Indices: 885206--885273 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 19
885196 ATACATATAT
885206 GATATATAGTTTTTAAAAA
1 GATATATAGTTTTTAAAAA
*
885225 GATATATAATATATTTAAAAATA
1 GATATATAGT-T-TTT-AAAA-A
* *
885248 TATTATATAGTTTTTCAAAA
1 GA-TATATAGTTTTTAAAAA
885268 -ATATAT
1 GATATAT
885274 GTTATAAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
18 5 0.12
19 10 0.25
20 2 0.05
21 6 0.15
22 7 0.17
23 3 0.08
24 7 0.17
ACGTcount: A:0.49, C:0.01, G:0.06, T:0.44
Consensus pattern (19 bp):
GATATATAGTTTTTAAAAA
Found at i:888100 original size:44 final size:44
Alignment explanation
Indices: 888036--888122 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
888026 GCATTCTTGT
888036 AAATATGAAAGTTCTAAAATATATATGAATGGAAAAGAATATGG
1 AAATATGAAAGTTCTAAAATATATATGAATGGAAAAGAATATGG
* * *
888080 AAATATGAAAGTTCTGAAATATATATGAATGTAAAATAATATG
1 AAATATGAAAGTTCTAAAATATATATGAATGGAAAAGAATATG
888123 AAACGATTAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.52, C:0.02, G:0.16, T:0.30
Consensus pattern (44 bp):
AAATATGAAAGTTCTAAAATATATATGAATGGAAAAGAATATGG
Found at i:892629 original size:55 final size:55
Alignment explanation
Indices: 892506--893216 Score: 881
Period size: 55 Copynumber: 12.9 Consensus size: 55
892496 TTCAATTATC
* *
892506 GTATTGGCACTATGTGTGCAACCCCCACAAAATTCATAATGAGTTTTATGAATTTCT
1 GTATTGGCACTATGTGTGCAA-CCCCACGAAATTCATAATGAG-TTTATGAATTTTT
*
892563 GTATTGGCACTATGTGTGCATCCCCACGAAATTCATAATGAGTTTATGAATTTTT
1 GTATTGGCACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTT
* * *
892618 GTATTAGCACTATGTGTGCAACCCCACGTAATTCATAATGAGTTTACGAA-TTTT
1 GTATTGGCACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTT
* ** * * *
892672 GTATTGGCATTATGTGTGCAACTTCACTAAATTCATAATGAGTTCATGAATTTCT
1 GTATTGGCACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTT
* * * * *
892727 ATAATGGCACTATGTGTGCAACCTCATGAAATTCATAATGAGTTTATGAATTTTC
1 GTATTGGCACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTT
* *
892782 GTATTGGTACTATGTGTGCAACCCCACGAAATTCATAATGTGTTTATGAATTTTT
1 GTATTGGCACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTT
* * * *
892837 TTATTAGCACTATGTGTGCAACCCCCATGAAATTCATAATGAGTTTATGAATTTAT
1 GTATTGGCACTATGTGTGCAA-CCCCACGAAATTCATAATGAGTTTATGAATTTTT
* * * *
892893 GTATTGGCACTATGAGTGCAAGCTCACAAAATTCATAATGAGTTTATGAATTTTT
1 GTATTGGCACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTT
* * *
892948 TTATTGGCACTATGTGTGCAACCTCACGAAATTCATAATGAGTTTATGAATTTCCT
1 GTATTGGCACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTT-TT
* * * **
893004 -TATTGGCACTATGTGTGTAACCCCATGAAATTCATAATGAGTTTATCAATTTCC
1 GTATTGGCACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTT
* * * * *
893058 GTATTGGCACTACGTGTGCAACCTCACGAGATTCCTAATGAGTTTATGAATTTTA
1 GTATTGGCACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTT
* * * * ** * **
893113 GTATTGGCACTATGTGTGCAA-CCTAAGTAATTTATAAAAAGTTTGTGAATTACT
1 GTATTGGCACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTT
* * * *
893167 GTATTGGCACTATGTGTGCAA-CCTACGTAATTCACAATGAGTTTGTGAAT
1 GTATTGGCACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAAT
893217 GACTGTATCA
Statistics
Matches: 566, Mismatches: 84, Indels: 11
0.86 0.13 0.02
Matches are distributed among these distances:
54 112 0.20
55 364 0.64
56 70 0.12
57 20 0.04
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (55 bp):
GTATTGGCACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTT
Found at i:892964 original size:221 final size:218
Alignment explanation
Indices: 892507--893216 Score: 951
Period size: 221 Copynumber: 3.2 Consensus size: 218
892497 TCAATTATCG
* *
892507 TATTGGCACTATGTGTGCAACCCCCACAAAATTCATAATGAGTTTTATGAA-TTTCTGTATTGGC
1 TATTGGCACTATGTGTGCAA-CCTCACGAAATTCATAATGAG-TTTATGAATTTTC-GTATTGGC
*
892571 ACTATGTGTGCATCCCCACGAAATTCATAATGAGTTTATGAATTTTTGTATTAGCACTATGTGTG
63 ACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTTGTATTAGCACTATGTGTG
* * * *
892636 CAACCCCACGTAATTCATAATGAGTTTACGAATTTTGTATTGGCATTATGTGTGCAACTTCACTA
128 CAACCCCACGAAATTCATAATGAGTTTATGAATTTTGTATTGGCACTATGTGTGCAAC-TCACAA
*
892701 AATTCATAATGAGTTCATGAATTTCTA
192 AATTCATAATGAGTTTATGAATTTCTA
* * *
892728 TAATGGCACTATGTGTGCAACCTCATGAAATTCATAATGAGTTTATGAATTTTCGTATTGGTACT
1 TATTGGCACTATGTGTGCAACCTCACGAAATTCATAATGAGTTTATGAATTTTCGTATTGGCACT
* *
892793 ATGTGTGCAACCCCACGAAATTCATAATGTGTTTATGAATTTTTTTATTAGCACTATGTGTGCAA
66 ATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTTGTATTAGCACTATGTGTGCAA
* *
892858 CCCCCATGAAATTCATAATGAGTTTATGAATTTATGTATTGGCACTATGAGTGCAAGCTCACAAA
131 -CCCCACGAAATTCATAATGAGTTTATGAATTT-TGTATTGGCACTATGTGTGCAA-CTCACAAA
* *
892923 ATTCATAATGAGTTTATGAATTTTTT
193 ATTCATAATGAGTTTATGAATTTCTA
* *
892949 TATTGGCACTATGTGTGCAACCTCACGAAATTCATAATGAGTTTATGAATTTCCTTATTGGCACT
1 TATTGGCACTATGTGTGCAACCTCACGAAATTCATAATGAGTTTATGAATTTTCGTATTGGCACT
* * * ** * *
893014 ATGTGTGTAACCCCATGAAATTCATAATGAGTTTATCAATTTCCGTATTGGCACTACGTGTGCAA
66 ATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTTGTATTAGCACTATGTGTGCAA
* * * *
893079 CCTCACGAGATTCCTAATGAGTTTATGAATTTTAGTATTGGCACTATGTGTGCAAC-CTA-AGTA
131 CCCCACGAAATTCATAATGAGTTTATGAATTTT-GTATTGGCACTATGTGTGCAACTC-ACA-AA
* ** * * *
893142 ATTTATAAAAAGTTTGTGAATTACTG
193 ATTCATAATGAGTTTATGAATTTCTA
* * *
893168 TATTGGCACTATGTGTGCAACCT-ACGTAATTCACAATGAGTTTGTGAAT
1 TATTGGCACTATGTGTGCAACCTCACGAAATTCATAATGAGTTTATGAAT
893217 GACTGTATCA
Statistics
Matches: 435, Mismatches: 47, Indels: 17
0.87 0.09 0.03
Matches are distributed among these distances:
218 25 0.06
219 126 0.29
220 99 0.23
221 184 0.42
222 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (218 bp):
TATTGGCACTATGTGTGCAACCTCACGAAATTCATAATGAGTTTATGAATTTTCGTATTGGCACT
ATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTTGTATTAGCACTATGTGTGCAA
CCCCACGAAATTCATAATGAGTTTATGAATTTTGTATTGGCACTATGTGTGCAACTCACAAAATT
CATAATGAGTTTATGAATTTCTA
Found at i:893000 original size:276 final size:275
Alignment explanation
Indices: 892497--893216 Score: 991
Period size: 276 Copynumber: 2.6 Consensus size: 275
892487 AGTATATGTT
* * *
892497 TCAATTATCGTATTGGCACTATGTGTGCAACCCCCACAAAATTCATAATGAGTTTTATGAATTTC
1 TCAATTTTCGTATTGGCACTATGTGTGCAA-CCCCACGAAATTCATAATGAG-TTTATGAATTTT
* * * *
892562 TGTATTGGCACTATGTGTGCATCCCCACGAAATTCATAATGAGTTTATGAATTTTTGTATTAGCA
64 TGTATTGGCACTATGTGTGCAACCCCAAGAAATTCATAATGAGTTTATGAATTTATGTATTGGCA
* * *
892627 CTATGTGTGCAACCCCACGTAATTCATAATGAGTTTACGAA-TTTTGTATTGGCATTATGTGTGC
129 CTATGTGTGCAACCTCACGTAATTCATAATGAGTTTATGAATTTTTGTATTGGCACTATGTGTGC
* * *
892691 AACTTCACTAAATTCATAATGAGTTCATGAATTT-CTATAATGGCACTATGTGTGCAACCTCATG
194 AACCTCACGAAATTCATAATGAGTTCATGAATTTCCT-TAATGGCACTATGTGTGCAACCCCATG
892755 AAATTCATAATGAGTTTA
258 AAATTCATAATGAGTTTA
* * * *
892773 TGAATTTTCGTATTGGTACTATGTGTGCAACCCCACGAAATTCATAATGTGTTTATGAATTTTTT
1 TCAATTTTCGTATTGGCACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTTG
* *
892838 TATTAGCACTATGTGTGCAACCCCCATGAAATTCATAATGAGTTTATGAATTTATGTATTGGCAC
66 TATTGGCACTATGTGTGCAA-CCCCAAGAAATTCATAATGAGTTTATGAATTTATGTATTGGCAC
* * ** *
892903 TATGAGTGCAAGCTCACAAAATTCATAATGAGTTTATGAATTTTTTTATTGGCACTATGTGTGCA
130 TATGTGTGCAACCTCACGTAATTCATAATGAGTTTATGAATTTTTGTATTGGCACTATGTGTGCA
* * *
892968 ACCTCACGAAATTCATAATGAGTTTATGAATTTCCTTATTGGCACTATGTGTGTAACCCCATGAA
195 ACCTCACGAAATTCATAATGAGTTCATGAATTTCCTTAATGGCACTATGTGTGCAACCCCATGAA
893033 ATTCATAATGAGTTTA
260 ATTCATAATGAGTTTA
* * * * * *
893049 TCAATTTCCGTATTGGCACTACGTGTGCAACCTCACGAGATTCCTAATGAGTTTATGAATTTTAG
1 TCAATTTTCGTATTGGCACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTTG
* * * ** *
893114 TATTGGCACTATGTGTGCAA-CCTAAGTAATTTATAAAAAGTTTGTGAA-TTACTGTATTGGCAC
66 TATTGGCACTATGTGTGCAACCCCAAGAAATTCATAATGAGTTTATGAATTTA-TGTATTGGCAC
* *
893177 TATGTGTGCAACCT-ACGTAATTCACAATGAGTTTGTGAAT
130 TATGTGTGCAACCTCACGTAATTCATAATGAGTTTATGAAT
893217 GACTGTATCA
Statistics
Matches: 390, Mismatches: 50, Indels: 11
0.86 0.11 0.02
Matches are distributed among these distances:
273 25 0.06
274 74 0.19
275 94 0.24
276 195 0.50
277 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (275 bp):
TCAATTTTCGTATTGGCACTATGTGTGCAACCCCACGAAATTCATAATGAGTTTATGAATTTTTG
TATTGGCACTATGTGTGCAACCCCAAGAAATTCATAATGAGTTTATGAATTTATGTATTGGCACT
ATGTGTGCAACCTCACGTAATTCATAATGAGTTTATGAATTTTTGTATTGGCACTATGTGTGCAA
CCTCACGAAATTCATAATGAGTTCATGAATTTCCTTAATGGCACTATGTGTGCAACCCCATGAAA
TTCATAATGAGTTTA
Found at i:893232 original size:54 final size:54
Alignment explanation
Indices: 893120--893233 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
893110 TTAGTATTGG
* * * ***
893120 CACTATGTGTGCAACCTAAGTAATTTATAAAAAGTTTGTGAATTACTGTATTGG
1 CACTATGTGTGCAACCTAAGTAATTCACAAAAAGTTTGTGAATGACTGTATCAA
* **
893174 CACTATGTGTGCAACCTACGTAATTCACAATGAGTTTGTGAATGACTGTATCAA
1 CACTATGTGTGCAACCTAAGTAATTCACAAAAAGTTTGTGAATGACTGTATCAA
893228 CACTAT
1 CACTAT
893234 ATATGAAGCT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (54 bp):
CACTATGTGTGCAACCTAAGTAATTCACAAAAAGTTTGTGAATGACTGTATCAA
Found at i:893823 original size:2 final size:2
Alignment explanation
Indices: 893816--893852 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
893806 GACATGTTTA
893816 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
893853 ATTGAAGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:894606 original size:20 final size:20
Alignment explanation
Indices: 894581--894620 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
894571 ATATATTCTT
894581 TCAGGAGGAAGCAAGATGTA
1 TCAGGAGGAAGCAAGATGTA
* * *
894601 TCAGGATGTATCAAGATGTA
1 TCAGGAGGAAGCAAGATGTA
894621 GCAAGATGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.30, T:0.23
Consensus pattern (20 bp):
TCAGGAGGAAGCAAGATGTA
Found at i:894610 original size:10 final size:10
Alignment explanation
Indices: 894592--894631 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
894582 CAGGAGGAAG
894592 CAAGATGTAT
1 CAAGATGTAT
*
894602 CAGGATGTAT
1 CAAGATGTAT
*
894612 CAAGATGTAG
1 CAAGATGTAT
894622 CAAGATGTAT
1 CAAGATGTAT
894632 TACCATTACT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.28
Consensus pattern (10 bp):
CAAGATGTAT
Found at i:898841 original size:21 final size:21
Alignment explanation
Indices: 898815--898854 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
898805 GAGAAATTGT
898815 TTTTAAAATAT-AAAAATGATG
1 TTTTAAAAT-TGAAAAATGATG
898836 TTTTAAAATTGAAAAATGA
1 TTTTAAAATTGAAAAATGA
898855 AAATAAGCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.38
Consensus pattern (21 bp):
TTTTAAAATTGAAAAATGATG
Found at i:902691 original size:21 final size:23
Alignment explanation
Indices: 902665--902716 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
902655 AGGGAATCGA
902665 TCCCCCCATG-A-GGGAACCAAT
1 TCCCCCCATGAAGGGGAACCAAT
** *
902686 TCCCCCTTTGAAGGGGAACCGAT
1 TCCCCCCATGAAGGGGAACCAAT
902709 TCCCCCCA
1 TCCCCCCA
902717 CAGGGGAATC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 8 0.33
22 1 0.04
23 15 0.62
ACGTcount: A:0.23, C:0.40, G:0.19, T:0.17
Consensus pattern (23 bp):
TCCCCCCATGAAGGGGAACCAAT
Found at i:902723 original size:21 final size:21
Alignment explanation
Indices: 902697--902736 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
902687 CCCCCTTTGA
*
902697 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
902718 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
902737 TGGGGTACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:909072 original size:17 final size:17
Alignment explanation
Indices: 909031--909072 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
909021 ATTAAGTGGT
909031 AATTT-TTCCAAAAAAG
1 AATTTATTCCAAAAAAG
*
909047 AATTTTATTCCATAAAAG
1 AA-TTTATTCCAAAAAAG
*
909065 GATTTATT
1 AATTTATT
909073 TAGTGACCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 2 0.09
17 9 0.41
18 11 0.50
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (17 bp):
AATTTATTCCAAAAAAG
Found at i:909131 original size:30 final size:30
Alignment explanation
Indices: 909075--909132 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
909065 GATTTATTTA
* * *
909075 GTGACCTAATTATAAATTTGGTAAAGTTTG
1 GTGACCAAAGTATAAATTTGGAAAAGTTTG
909105 GTGACCAAAGTATAAACTTT-GAAAAGTT
1 GTGACCAAAGTATAAA-TTTGGAAAAGTT
909133 CAAGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (30 bp):
GTGACCAAAGTATAAATTTGGAAAAGTTTG
Found at i:913321 original size:40 final size:40
Alignment explanation
Indices: 913277--913426 Score: 228
Period size: 40 Copynumber: 3.8 Consensus size: 40
913267 AGGACACTAA
913277 GTGTATATGGTGGGCACGACCTTATGTGTAATACACTTCG
1 GTGTATATGGTGGGCACGACCTTATGTGTAATACACTTCG
* * *
913317 GTGTATATGGTGGACATGACCTTATGTGTAATACACTTTG
1 GTGTATATGGTGGGCACGACCTTATGTGTAATACACTTCG
* * *
913357 GTGTATATGGTGGGTACGACTTTATGTGTAATACACTTCA
1 GTGTATATGGTGGGCACGACCTTATGTGTAATACACTTCG
* *
913397 GTTTATATGGTGGGTACGACCTTATGTGTA
1 GTGTATATGGTGGGCACGACCTTATGTGTA
913427 GCACTATGGT
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.23, C:0.13, G:0.27, T:0.37
Consensus pattern (40 bp):
GTGTATATGGTGGGCACGACCTTATGTGTAATACACTTCG
Found at i:916326 original size:3 final size:3
Alignment explanation
Indices: 916314--916366 Score: 97
Period size: 3 Copynumber: 17.3 Consensus size: 3
916304 GCAATATTTG
916314 TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
916360 TAT TAT T
1 TAT TAT T
916367 TGTTTCAAAG
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 46 0.94
4 3 0.06
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:920432 original size:13 final size:13
Alignment explanation
Indices: 920414--920439 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
920404 ACGCAAATAA
920414 TAATAATCAAAAT
1 TAATAATCAAAAT
920427 TAATAATCAAAAT
1 TAATAATCAAAAT
920440 ATCATGTACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TAATAATCAAAAT
Found at i:921470 original size:180 final size:181
Alignment explanation
Indices: 921038--922591 Score: 2574
Period size: 180 Copynumber: 8.6 Consensus size: 181
921028 TTCACCTTTA
** * * ** * *
921038 GTCATTTATAGACTGGTTTTATCATATTTTTACAGGTTATATTATTATGGATCTATACATTTTTA
1 GTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTA
* *
921103 TAAAGTATCGACACTTTATTGGCGCTATATCTTCTTCTCTTATTAATTCCAAAAGTGTCGATATT
66 TAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTT-TTAATTCCAAAAGTGTCGATACT
* *
921168 TATAATAAATTATCGACAATTTCAACATATCCGGTAGCGCTTTACCTGTTTT
130 TATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTT
921220 GTCATTTCGAGACCGGTTTTGTCATATTTTTA-CTGTTATATTGTTATGGATCGATACATTTTTA
1 GTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTA
921284 TAAAGTATCGA-ACTTTATTGGC-CTATAACTTCTTCTCTTATTAATTCCAAAAGTGTCGATACT
66 TAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTT-TTAATTCCAAAAGTGTCGATACT
*
921347 TATAATAAATTATCGACACTTTCAACATATCCGGTAGCGCTTTACCTGTTTT
130 TATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTT
921399 GTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTA
1 GTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTA
921464 TAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTATTAATTCCAAAA--GTCGATACT
66 TAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTT-TTAATTCCAAAAGTGTCGATACT
921527 TATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTT
130 TATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTT
*
921579 GTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTA
1 GTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTA
* *
921644 TAAAGTATCGACACGTTATTAGCGCTATAACTTCTTCTCTTATTAATTCCAAAA--GTCGATACT
66 TAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTT-TTAATTCCAAAAGTGTCGATACT
921707 TATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTT
130 TATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTT
* *
921759 GTCATTTCGAGACCGGTTTTGTCATATTTGTACATGTTATATTGTTATGGATCGATACATTTTTA
1 GTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTA
* *
921824 TAAAGTATCGCCACTTTATTGGCGCTATAAC-TCTTCTCTTTTAAATTCCAAAAGTGTCGATACG
66 TAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTT-AATTCCAAAAGTGTCGATACT
921888 TATAA-AAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTT
130 TATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTT
* * * *
921939 GTCATTTCGAGACCGATTTTATCATATTTTTACCTGTTATATTGTTATAGATCGATATATTTTTA
1 GTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTA
* *
922004 TAAAGTATCGACACTTTATTGACGCTATAACTTCTTCTCTTTTAAATTCCAAAAGGGTCGATACT
66 TAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTT-AATTCCAAAAGTGTCGATACT
* *
922069 TATAATAAATTATCGACACTTTCAACATATCCGGTAGCACTTTACCTGTTTT
130 TATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTT
* *
922121 GTCATTTCGAGACAGGTTTTGTCATATTTTTAACTGTTATATTGTTATGGATCGAT--ATTTTTA
1 GTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTA
* *
922184 TAAAATATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTATCGATACT
66 TAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTT-AATTCCAAAAGTGTCGATACT
*
922249 TATAATAAATTATCGACACTTTCAACATAACCGATAGCGCTTTACCTGTTTT
130 TATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTT
* *
922301 GTCATTTCGATACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATTTTTA
1 GTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTA
* *
922366 TAAAGTATCGACACTTTATTGGCGCTATAAC-TCTTCTCTTTTAAATTCCAAAAGTGTTGATACG
66 TAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTT-AATTCCAAAAGTGTCGATACT
*
922430 TATAATAAATTATCGACACTTTCAACATAACCAGTAGCGCTTTACCTGTTTT
130 TATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTT
*
922482 GTCATTTCGAGACCGATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTA
1 GTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTA
* * *
922547 TAAAGTATCGACATTTTATTGACGATATAACTTCTTCTCTTTTAA
66 TAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAA
922592 AAAAGGTAAA
Statistics
Matches: 1299, Mismatches: 62, Indels: 23
0.94 0.04 0.02
Matches are distributed among these distances:
178 2 0.00
179 141 0.11
180 684 0.53
181 271 0.21
182 201 0.15
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (181 bp):
GTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTA
TAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAATTCCAAAAGTGTCGATACTT
ATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTT
Found at i:922328 original size:542 final size:540
Alignment explanation
Indices: 921038--922592 Score: 2624
Period size: 542 Copynumber: 2.9 Consensus size: 540
921028 TTCACCTTTA
** * * * * *
921038 GTCATTTATAGACTGGTTTTATCATATTTTT-ACAGGTTATATTATTATGGATCTATACATTTTT
1 GTCATTTCGAGACAGGTTTTGTCATATTTTTAAC-TGTTATATTGTTATGGATCGATA-ATTTTT
* *
921102 ATAAAGTATCGACACTTTATTGGCGCTATATCTTCTTCTCTTATTAATTCCAAAAGTGTCGATAT
64 ATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTATTAATTCCAAAAGT-TCGATAC
* *
921167 TTATAATAAATTATCGACAATTTCAACATATCCGGTAGCGCTTTACCTGTTTTGTCATTTCGAGA
128 TTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTTGTCATTTCGAGA
*
921232 CCGGTTTTGTCATATTTTTAC-TGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGAA
193 CCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGCA
*
921296 CTTTATTGGC-CTATAACTTCTTCTCTTATT-AATTCCAAAAGTGTCGATACTTATAATAAATTA
258 CTTTATTGGCGCTATAAC-TCTTCTCTT-TTAAATTCCAAAAGTGTCGATACGTATAATAAATTA
* *
921359 TCGACACTTTCAACATATCCGGTAGCGCTTTACCTGTTTTGTCATTTCGAGACCGGTTTTGTCAT
321 TCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTTGTCATTTCGAGACCGATTTTGTCAT
*
921424 ATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTTATTGGCGC
386 ATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTTATTGACGC
921489 TATAACTTCTTCTCTTATT-AATTCCAAAAGTCGATACTTATAATAAATTATCGACACTTTCAAC
451 TATAACTTCTTCTCTT-TTAAATTCCAAAAGTCGATACTTATAATAAATTATCGACACTTTCAAC
*
921553 ATAACCGGTAGCGCTTTACCTGTTTT
515 ATAACCGGTAGCACTTTACCTGTTTT
* * *
921579 GTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTA
1 GTCATTTCGAGACAGGTTTTGTCATATTTTTAACTGTTATATTGTTATGGATCGATA-ATTTTTA
* *
921644 TAAAGTATCGACACGTTATTAGCGCTATAACTTCTTCTCTTATTAATTCCAAAAG-TCGATACTT
65 TAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTATTAATTCCAAAAGTTCGATACTT
921708 ATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTTGTCATTTCGAGACC
130 ATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTTGTCATTTCGAGACC
*
921773 GGTTTTGTCATATTTGTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGCCAC
195 GGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCG-CAC
921838 TTTATTGGCGCTATAACTCTTCTCTTTTAAATTCCAAAAGTGTCGATACGTATAA-AAATTATCG
259 TTTATTGGCGCTATAACTCTTCTCTTTTAAATTCCAAAAGTGTCGATACGTATAATAAATTATCG
*
921902 ACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTTGTCATTTCGAGACCGATTTTATCATATT
324 ACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTTGTCATTTCGAGACCGATTTTGTCATATT
* *
921967 TTTACCTGTTATATTGTTATAGATCGATATATTTTTATAAAGTATCGACACTTTATTGACGCTAT
389 TTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTTATTGACGCTAT
922032 AACTTCTTCTCTTTTAAATTCCAAAAGGGTCGATACTTATAATAAATTATCGACACTTTCAACAT
454 AACTTCTTCTCTTTTAAATTCCAAAA--GTCGATACTTATAATAAATTATCGACACTTTCAACAT
*
922097 ATCCGGTAGCACTTTACCTGTTTT
517 AACCGGTAGCACTTTACCTGTTTT
922121 GTCATTTCGAGACAGGTTTTGTCATATTTTTAACTGTTATATTGTTATGGATCGAT-ATTTTTAT
1 GTCATTTCGAGACAGGTTTTGTCATATTTTTAACTGTTATATTGTTATGGATCGATAATTTTTAT
*
922185 AAAATATCGACACTTTATTGGCGCTATAACTTCTTCTCTT-TTAAATTCCAAAAGTATCGATACT
66 AAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTATT-AATTCCAAAAGT-TCGATACT
* *
922249 TATAATAAATTATCGACACTTTCAACATAACCGATAGCGCTTTACCTGTTTTGTCATTTCGATAC
129 TATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTTGTCATTTCGAGAC
922314 CGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACA
194 CGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCG-CA
*
922379 CTTTATTGGCGCTATAACTCTTCTCTTTTAAATTCCAAAAGTGTTGATACGTATAATAAATTATC
258 CTTTATTGGCGCTATAACTCTTCTCTTTTAAATTCCAAAAGTGTCGATACGTATAATAAATTATC
*
922444 GACACTTTCAACATAACCAGTAGCGCTTTACCTGTTTTGTCATTTCGAGACCGATTTTGTCATAT
323 GACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTTGTCATTTCGAGACCGATTTTGTCATAT
* *
922509 TTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACATTTTATTGACGATA
388 TTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTTATTGACGCTA
922574 TAACTTCTTCTCTTTTAAA
453 TAACTTCTTCTCTTTTAAA
922593 AAAGGTAAAA
Statistics
Matches: 959, Mismatches: 43, Indels: 22
0.94 0.04 0.02
Matches are distributed among these distances:
539 93 0.10
540 255 0.27
541 151 0.16
542 309 0.32
543 151 0.16
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (540 bp):
GTCATTTCGAGACAGGTTTTGTCATATTTTTAACTGTTATATTGTTATGGATCGATAATTTTTAT
AAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTATTAATTCCAAAAGTTCGATACTTA
TAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTTGTCATTTCGAGACCG
GTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGCACTT
TATTGGCGCTATAACTCTTCTCTTTTAAATTCCAAAAGTGTCGATACGTATAATAAATTATCGAC
ACTTTCAACATAACCGGTAGCGCTTTACCTGTTTTGTCATTTCGAGACCGATTTTGTCATATTTT
TACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTTATTGACGCTATAA
CTTCTTCTCTTTTAAATTCCAAAAGTCGATACTTATAATAAATTATCGACACTTTCAACATAACC
GGTAGCACTTTACCTGTTTT
Found at i:932457 original size:58 final size:58
Alignment explanation
Indices: 932354--932538 Score: 307
Period size: 58 Copynumber: 3.2 Consensus size: 58
932344 GAGTGTTACA
* *
932354 TACAAAGCTAGAATCATTTAAGATTCTCAAGGAAATAAATTCAACTATTTATTTTACT
1 TACAAAGTTAGAATCATTTAAGATTCTCAAGGAAATAAATTCAACTATTTATTTTTCT
* * * *
932412 TACCAAGTTAGAGTCATTTAAGATTATCAAGGAAACAAATTCAACTATTTATTTTTCT
1 TACAAAGTTAGAATCATTTAAGATTCTCAAGGAAATAAATTCAACTATTTATTTTTCT
*
932470 TACAAAGTTAGAATCATTTAAGATTCTCAAAGAAATAAATTCAACTATTTATTTTTCT
1 TACAAAGTTAGAATCATTTAAGATTCTCAAGGAAATAAATTCAACTATTTATTTTTCT
932528 TACAAAGTTAG
1 TACAAAGTTAG
932539 TGTCGAGACG
Statistics
Matches: 116, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 116 1.00
ACGTcount: A:0.41, C:0.13, G:0.09, T:0.37
Consensus pattern (58 bp):
TACAAAGTTAGAATCATTTAAGATTCTCAAGGAAATAAATTCAACTATTTATTTTTCT
Found at i:932878 original size:18 final size:18
Alignment explanation
Indices: 932855--932893 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
932845 ATTGATTTGT
932855 ATTTGTAATAAATTATAA
1 ATTTGTAATAAATTATAA
* * *
932873 ATTTGTATTTAATTTTAA
1 ATTTGTAATAAATTATAA
932891 ATT
1 ATT
932894 AATAATAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (18 bp):
ATTTGTAATAAATTATAA
Found at i:934686 original size:45 final size:45
Alignment explanation
Indices: 934587--934701 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 45
934577 TCAATAATAA
* * * *
934587 AAAAGAACTAACCCTTTAATTTTAATTTTCGCAATCCAACAATTG
1 AAAAGAACTAATCCTTTGATTTTAATTTTCGCAACCCAACAATCG
* * * *
934632 -AAAGTAACTAATCATTTGATTTTAATTTTTGCAACCCGATAATCG
1 AAAAG-AACTAATCCTTTGATTTTAATTTTCGCAACCCAACAATCG
*
934677 AAAAGAACTAATCCTTTGATCTTAA
1 AAAAGAACTAATCCTTTGATTTTAA
934702 GACTAAAATT
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
44 4 0.07
45 50 0.86
46 4 0.07
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (45 bp):
AAAAGAACTAATCCTTTGATTTTAATTTTCGCAACCCAACAATCG
Found at i:948038 original size:17 final size:18
Alignment explanation
Indices: 948016--948054 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
948006 ATATATTATT
948016 TATTATTTACT-TTATAA
1 TATTATTTACTATTATAA
*
948033 TATTATTTATTATTATAA
1 TATTATTTACTATTATAA
948051 -ATTA
1 TATTA
948055 GATTTATCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTATTTACTATTATAA
Found at i:948990 original size:182 final size:182
Alignment explanation
Indices: 948605--949069 Score: 698
Period size: 182 Copynumber: 2.6 Consensus size: 182
948595 GATCCAAATT
* * * * * *
948605 AAAAATGTATTGATCCACAACGATATAACAGGTAAAACTATGACAAAACCAGTATTGAAATGATA
1 AAAAATGTATCGATCAACAACGATATAACAGGTAAAAATATGATAAAACCGGTATTAAAATGATA
* * * * **
948670 AAACCGGTAAAGCGGTACCGAATATATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTTC
66 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGAAACTTTAATATAAGGATCGACACTTC
* * *
948735 GTTAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTCA
131 ATGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAA
* * * * *
948787 AAAAATATATCGATCAACAACGATGTAACAGGTAAAAATATGATAAAACTGGTATCAAAATGATG
1 AAAAATGTATCGATCAACAACGATATAACAGGTAAAAATATGATAAAACCGGTATTAAAATGATA
* * *
948852 AAACCGGTAAAACGCTACCGGATATATTGAAAGTGTCGAAACTTT-ATATAAGGATCGACACTTT
66 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGAAACTTTAATATAAGGATCGACACTTC
948916 ATGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAA
131 ATGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAA
948968 AAAAATGTATCGATCAAACAACGATATAACAGGTAAAAATATGATAAAACCGGTATTAAAATGAT
1 AAAAATGTATCGATC-AACAACGATATAACAGGTAAAAATATGATAAAACCGGTATTAAAATGAT
*
949033 AAAACCGGTAAAATGATACCGGATATATTAAAAGTGT
65 AAAACCGGTAAAACGATACCGGATATATTAAAAGTGT
949070 AATTGTTGCT
Statistics
Matches: 253, Mismatches: 29, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
181 81 0.32
182 172 0.68
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.26
Consensus pattern (182 bp):
AAAAATGTATCGATCAACAACGATATAACAGGTAAAAATATGATAAAACCGGTATTAAAATGATA
AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGAAACTTTAATATAAGGATCGACACTTC
ATGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAA
Found at i:949022 original size:20 final size:19
Alignment explanation
Indices: 948999--949045 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
948989 CGATATAACA
948999 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
949019 GGTATTAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
949039 GGTAAAA
1 GGTAAAA
949046 TGATACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.09, G:0.17, T:0.21
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:949046 original size:17 final size:18
Alignment explanation
Indices: 949008--949050 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
948998 AGGTAAAAAT
949008 ATGATAAAACCGGTATTAAA
1 ATGATAAAACCGG--TTAAA
949028 ATGATAAAACCGG-TAAA
1 ATGATAAAACCGGTTAAA
949045 ATGATA
1 ATGATA
949051 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.43
20 13 0.57
ACGTcount: A:0.51, C:0.09, G:0.16, T:0.23
Consensus pattern (18 bp):
ATGATAAAACCGGTTAAA
Found at i:952138 original size:182 final size:182
Alignment explanation
Indices: 951480--952501 Score: 1748
Period size: 182 Copynumber: 5.6 Consensus size: 182
951470 TTTTACCTTT
* * *
951480 TTTAAAAGAGAAGAAGTTATATCGTCAATAAAGTGTCGATACTTTATAAAAATGTATCGATTCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
*
951545 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
* *
951610 CGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACACTTTTGTAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
951662 TTTAAAAGAGAAG-AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
951726 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
951791 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCG--ACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* *
951841 -TTAATAAGAGAAGAAGTTATAGCGCCAATAATGTGTCGATACTTTATAAAAATATATCGATCCA
1 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
951905 TAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
65 TAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
*
951970 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGATACTTTTGGAA
130 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* * *
952023 TTTAAAAGAGAAGAAATTATAGCGTCAATAAAGTGTCGATACTTTATAAAAATGTATCAATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* *
952088 AACAATATAACATGTAATAATATGACAAAACCGGTCTCGAAATGACAAAACAGTTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
* *
952153 CAGTTATGTTGAAAGTATCGATAATTTATTATAAGTATCGACACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* *
952205 TATAAAAGAGAAGAAGTTATAACGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
*
952270 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
*
952335 CGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTT-GAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* *
952386 ATTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATATTTTATAAAAATGTATCGATCCA
1 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
* * * **
952451 TAATAATATAACATGTAAAAATATGATAAAACTGGTCTATAAATGACAAAA
65 TAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAA
952502 GGCGAACGCA
Statistics
Matches: 795, Mismatches: 39, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
178 4 0.01
179 17 0.02
180 154 0.19
181 157 0.20
182 459 0.58
183 4 0.01
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.28
Consensus pattern (182 bp):
TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
Found at i:952733 original size:87 final size:86
Alignment explanation
Indices: 952637--952803 Score: 282
Period size: 87 Copynumber: 1.9 Consensus size: 86
952627 AAATAGGTCA
952637 ATATAAGCGCTA-CATATTACATTATATAAACGCTACCTAATATGTTATTGTACTTGATAATATT
1 ATATAAGCGCTATC-TATTACATTATATAAACGCTACCTAATATGTTATTGTACTTGATAATATT
952701 TCCGGTTAAATACATATTTTATT
65 TCCGGTTAAATA-ATATTTTATT
* *
952724 ATATAAGCGCTATCTATTACATTATATAAGCGTTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTATCTATTACATTATATAAACGCTACCTAATATGTTATTGTACTTGATAATATTT
*
952789 TCGGTTAAATAATAT
66 CCGGTTAAATAATAT
952804 AACATAACGA
Statistics
Matches: 76, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
86 4 0.05
87 71 0.93
88 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (86 bp):
ATATAAGCGCTATCTATTACATTATATAAACGCTACCTAATATGTTATTGTACTTGATAATATTT
CCGGTTAAATAATATTTTATT
Found at i:952771 original size:23 final size:23
Alignment explanation
Indices: 952721--952765 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
952711 TACATATTTT
* *
952721 ATTATATAAGCGCTATCTATTAC
1 ATTATATAAGCGCTACCTAATAC
*
952744 ATTATATAAGCGTTACCTAATA
1 ATTATATAAGCGCTACCTAATA
952766 TGTTATTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:953328 original size:20 final size:19
Alignment explanation
Indices: 953291--953337 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
953281 AAATATAAAA
*
953291 ACAAAAAAATGACCAAATG
1 ACAAAAAAATGACAAAATG
*
953310 ACAAAAAACATGTCAAAAT-
1 ACAAAAAA-ATGACAAAATG
*
953329 ATAAAAAAA
1 ACAAAAAAA
953338 CATATCATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 1 0.04
19 15 0.62
20 8 0.33
ACGTcount: A:0.68, C:0.13, G:0.06, T:0.13
Consensus pattern (19 bp):
ACAAAAAAATGACAAAATG
Found at i:953338 original size:20 final size:22
Alignment explanation
Indices: 953312--953364 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 22
953302 ACCAAATGAC
* *
953312 AAAAAACATGTCA-AAATA-TA
1 AAAAAACATATCATAAAAAGTA
953332 AAAAAACATATCATAAAAAGTA
1 AAAAAACATATCATAAAAAGTA
953354 AATAAAACATA
1 AA-AAAACATA
953365 CTATAAAGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 12 0.43
21 4 0.14
22 4 0.14
23 8 0.29
ACGTcount: A:0.68, C:0.09, G:0.04, T:0.19
Consensus pattern (22 bp):
AAAAAACATATCATAAAAAGTA
Found at i:954729 original size:13 final size:12
Alignment explanation
Indices: 954711--954743 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
954701 CGTATAGATT
954711 TTTTAAAAATTA
1 TTTTAAAAATTA
954723 CTTTTAAAAATTA
1 -TTTTAAAAATTA
954736 -TTTAAAAA
1 TTTTAAAAA
954744 AAAAAAATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.40
13 12 0.60
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (12 bp):
TTTTAAAAATTA
Found at i:957555 original size:26 final size:25
Alignment explanation
Indices: 957517--957569 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
957507 AAATAGTTTA
* * *
957517 TTTTCGCCCCCTATAATTTTATAAG
1 TTTTCCCCCCCTAAAATTTTAAAAG
957542 TTTTCCCCACCCTAAAATTTTAAAAG
1 TTTTCCCC-CCCTAAAATTTTAAAAG
957568 TT
1 TT
957570 CACCTCATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (25 bp):
TTTTCCCCCCCTAAAATTTTAAAAG
Found at i:958114 original size:18 final size:18
Alignment explanation
Indices: 958093--958134 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
958083 GAAGTCCAGC
958093 GACGAAGAGCTAAGCGAA
1 GACGAAGAGCTAAGCGAA
958111 GACGAAGAGCTAAGCGAA
1 GACGAAGAGCTAAGCGAA
958129 GACGAA
1 GACGAA
958135 TATGCCGCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.45, C:0.17, G:0.33, T:0.05
Consensus pattern (18 bp):
GACGAAGAGCTAAGCGAA
Found at i:959679 original size:51 final size:52
Alignment explanation
Indices: 959614--959757 Score: 159
Period size: 51 Copynumber: 2.8 Consensus size: 52
959604 CGTCATGTAA
* *
959614 AGGTGACGAGTTCCAATAAAAAATATTTTTTTATTTAAACTCT-TCATC-TCG
1 AGGTAACGAGTTCCAATAAAAAATATTTTTTTATTGAAACTCTATCA-CATCG
* * * * *
959665 AGGTTACGAGTTCCAATAAAATATATATTTTTA-TGAAAATTTATCACATCG
1 AGGTAACGAGTTCCAATAAAAAATATTTTTTTATTGAAACTCTATCACATCG
** **
959716 AGGTAAAAAGTTTAAATAAAAAATATTTTTTTATTGAAACTC
1 AGGTAACGAGTTCCAATAAAAAATATTTTTTTATTGAAACTC
959758 GTCACCTCAA
Statistics
Matches: 75, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
50 7 0.09
51 62 0.83
52 6 0.08
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (52 bp):
AGGTAACGAGTTCCAATAAAAAATATTTTTTTATTGAAACTCTATCACATCG
Found at i:969364 original size:23 final size:23
Alignment explanation
Indices: 969338--969387 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
969328 GGAATCGATA
**
969338 CCCCTCTTGAAGGGGAACTGATT
1 CCCCTCTTGAAGGGGAACCAATT
* *
969361 CCCCTTTTGATGGGGAACCAATT
1 CCCCTCTTGAAGGGGAACCAATT
969384 CCCC
1 CCCC
969388 CTGTAGGGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.20, C:0.32, G:0.22, T:0.26
Consensus pattern (23 bp):
CCCCTCTTGAAGGGGAACCAATT
Found at i:973970 original size:54 final size:54
Alignment explanation
Indices: 973458--973951 Score: 790
Period size: 54 Copynumber: 9.1 Consensus size: 54
973448 ACCTTTTCAA
* *
973458 GTGTGCAACTTAAGAAATTCATAATGAGTTTATGAATTTCTGTATTGGCACTAT
1 GTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTGGCACTAT
* * *
973512 GTGTGCAACCTAAGAAATTCCTAATGAGTTTATGAATTTTCGTATTGGCATTAT
1 GTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTGGCACTAT
973566 GTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTGGCACTAT
1 GTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTGGCACTAT
* *
973620 GTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCATACTGGCACTAT
1 GTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTGGCACTAT
* *
973674 GTATGCAACCTAAGAAATTCATAATGAGTTTATGAATTTTCGTATTGGCACTAT
1 GTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTGGCACTAT
* * *
973728 GTGTGTAACCTAAGAAATTCATAATAAGTTTATGAATTTCTGTATTGGCACTAT
1 GTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTGGCACTAT
* *
973782 GTGTGCAACCTAAGGAATTCATAATGAGTTTATGAATTTCCATATTGGCACTAT
1 GTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTGGCACTAT
* ** *
973836 GTGTGCAACTTAAGAAATTCATAATGAGTTTATGAATTTTTGTATTGACACTAT
1 GTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTGGCACTAT
* * * *
973890 GTGTGCAACTTAAGAAATTCATAATGAGTTTGTGAATTACCGTATTGGCACTAC
1 GTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTGGCACTAT
973944 GTGTGCAA
1 GTGTGCAA
973952 ACTATAGAGT
Statistics
Matches: 404, Mismatches: 36, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 404 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (54 bp):
GTGTGCAACCTAAGAAATTCATAATGAGTTTATGAATTTCCGTATTGGCACTAT
Found at i:974232 original size:49 final size:49
Alignment explanation
Indices: 974138--974232 Score: 127
Period size: 49 Copynumber: 1.9 Consensus size: 49
974128 CTGTGTTTTT
* *** **
974138 TGGCAGAAAGGTGCCATTAATGCAAGATAGATGCCTAACGGTGCATTTC
1 TGGCAGAAAGGTGCCACTAATGCAAGATAGATGAAGAACAATGCATTTC
*
974187 TGGCAGAAAGGTGCCACTAATGCAAGTTAGATGAAGAACAATGCAT
1 TGGCAGAAAGGTGCCACTAATGCAAGATAGATGAAGAACAATGCAT
974233 AATTGGTATG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 39 1.00
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (49 bp):
TGGCAGAAAGGTGCCACTAATGCAAGATAGATGAAGAACAATGCATTTC
Found at i:990606 original size:17 final size:17
Alignment explanation
Indices: 990586--990620 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
990576 TCTCACCTCC
* *
990586 TTCTTTTTCTTGTTCTT
1 TTCTTCTTCTTCTTCTT
990603 TTCTTCTTCTTCTTCTT
1 TTCTTCTTCTTCTTCTT
990620 T
1 T
990621 ATTCTTTCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.74
Consensus pattern (17 bp):
TTCTTCTTCTTCTTCTT
Found at i:992151 original size:20 final size:20
Alignment explanation
Indices: 992128--992178 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
992118 ACTACAAGAA
*
992128 CAATATCGATATTGTTCATG
1 CAATATCGATAATGTTCATG
*
992148 CAATATCGGTAATGTTCATG
1 CAATATCGATAATGTTCATG
* *
992168 TAGTATCGATA
1 CAATATCGATA
992179 CTATAAGAAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (20 bp):
CAATATCGATAATGTTCATG
Found at i:994570 original size:17 final size:17
Alignment explanation
Indices: 994548--994581 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
994538 TGTTCACGTT
994548 GATCTTCCCTTAGTTTC
1 GATCTTCCCTTAGTTTC
*
994565 GATCTTCCTTTAGTTTC
1 GATCTTCCCTTAGTTTC
994582 TCTCGATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.26, G:0.12, T:0.50
Consensus pattern (17 bp):
GATCTTCCCTTAGTTTC
Found at i:1011817 original size:23 final size:23
Alignment explanation
Indices: 1011790--1011855 Score: 96
Period size: 23 Copynumber: 2.9 Consensus size: 23
1011780 AACCACATAT
*
1011790 ATGTCCCGAAGGATCGCGTAGAA
1 ATGTCCCGAAGGACCGCGTAGAA
*
1011813 ATGTCCCGAAGGACCACGTAGAA
1 ATGTCCCGAAGGACCGCGTAGAA
* *
1011836 TTATCCCGAAGGACCGCGTA
1 ATGTCCCGAAGGACCGCGTA
1011856 AAACCCTCGA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.30, C:0.26, G:0.27, T:0.17
Consensus pattern (23 bp):
ATGTCCCGAAGGACCGCGTAGAA
Found at i:1018573 original size:21 final size:22
Alignment explanation
Indices: 1018526--1018577 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
1018516 ATAAATTGCA
1018526 CCGAAGTG-CCACATAGAATGTC
1 CCGAA-TGACCACATAGAATGTC
* *
1018548 TCGAATGACCACATA-TATGTC
1 CCGAATGACCACATAGAATGTC
1018569 CCGAATGAC
1 CCGAATGAC
1018578 TGTGTAGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (22 bp):
CCGAATGACCACATAGAATGTC
Found at i:1039824 original size:27 final size:26
Alignment explanation
Indices: 1039768--1039833 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 26
1039758 TATCAAAGAT
*
1039768 AAAATAAAATAAAATGAAACGAAATA
1 AAAATAAAATAAAATGAAACAAAATA
*
1039794 AAAATAAAACTAAGATGAAA-AATAATCA
1 AAAATAAAA-TAAAATGAAACAA-AAT-A
1039822 AAATATAAAATA
1 AAA-ATAAAATA
1039834 TAAAATAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 10 0.29
27 12 0.35
28 6 0.18
29 6 0.18
ACGTcount: A:0.71, C:0.05, G:0.06, T:0.18
Consensus pattern (26 bp):
AAAATAAAATAAAATGAAACAAAATA
Found at i:1040535 original size:28 final size:29
Alignment explanation
Indices: 1040502--1040557 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
1040492 ATAACAATTA
*
1040502 AAATAAAA-ATTAGTATGTTAGTTCGAAC
1 AAATAAAAGATTAGAATGTTAGTTCGAAC
*
1040530 AAATAAAAGTTTAGAATGTTAGTTCGAA
1 AAATAAAAGATTAGAATGTTAGTTCGAA
1040558 TGATAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 8 0.32
29 17 0.68
ACGTcount: A:0.46, C:0.05, G:0.16, T:0.32
Consensus pattern (29 bp):
AAATAAAAGATTAGAATGTTAGTTCGAAC
Found at i:1042585 original size:219 final size:219
Alignment explanation
Indices: 1041981--1042708 Score: 917
Period size: 219 Copynumber: 3.3 Consensus size: 219
1041971 AGTGATATTC
** * * * * ** *
1041981 TTCCTTCATGTTGAGG-AGTTTGATTGTCTAAGGATGACATTGCTCCTTCGCATTGAGAAGATCA
1 TTCCTTCGCGTTGAGGAAGTCTGATTATCTGAGGATGACACTGCTCCTTCGTGTTGAGGAGATCA
* * * *
1042045 -GTCAATCTGGA-AAATATTTGGTGTTGAAGACAACACTGCTCATCCATGTTGAAGAGATCTGGT
66 GGTCAATCTGGAGATA-ATTTGATGTTGAAGACGACATTGCTCATCCATGTTGAAGAGATCTGGT
* * ** * * * * *
1042108 CGCTTCCAAATTAATTGTTTGCTGAAGATGACGATGTTCCTTCTTATTAAGGAAATCGAGTCAAC
130 CGTTTTCAGGTAAATTGTTTGCTGAAGATGACGTTGTTCCTTCTTATTGAGGAAATCGGGTCAAT
*
1042173 CTATAGATAATTTAGAGACAACACG
195 CTAGAGATAATTTAGAGACAACACG
* *
1042198 ATTCCTTCGCGTTGAGGAAGTCTGATTATCTGAGGATGACACTGCTCCTTCGTCTTGAGGAAATC
1 -TTCCTTCGCGTTGAGGAAGTCTGATTATCTGAGGATGACACTGCTCCTTCGTGTTGAGGAGATC
* * * *
1042263 GGGTCAATATGAAGATAATTTGATGTTGAAGACGACATTGCTCATCCATGTTGAAGAGATCTAGT
65 AGGTCAATCTGGAGATAATTTGATGTTGAAGACGACATTGCTCATCCATGTTGAAGAGATCTGGT
* * * *
1042328 CGTTTTCAGGTCAATTGTTTGCTGAAGATGATGTTGTTCCTTCTTGTTGAGGAAAAT-GGGTTAA
130 CGTTTTCAGGTAAATTGTTTGCTGAAGATGACGTTGTTCCTTCTTATTGAGG-AAATCGGGTCAA
*
1042392 TCTAGAGATAATTTAGAGTCAACACAG
194 TCTAGAGATAATTTAGAGACAACAC-G
*
1042419 TTCCTTCGCGTTGAGGAAGTCTAATTATCTGAGGATGA-ACTGCTCCTTCGTGTTGAGGAGATCA
1 TTCCTTCGCGTTGAGGAAGTCTGATTATCTGAGGATGACACTGCTCCTTCGTGTTGAGGAGATCA
* *
1042483 GGTTAATCTGGAGATAATTTGATGTTGAAGACGACATTGTTCATCCATGTTGAAGAGATCTGGTC
66 GGTCAATCTGGAGATAATTTGATGTTGAAGACGACATTGCTCATCCATGTTGAAGAGATCTGGTC
* * * * *
1042548 ATTTTCAGGTAAATTTTTTGATGGAGATGACGTTGTTCCTTCTTTTTGAGGAAATCGGGTCAATC
131 GTTTTCAGGTAAATTGTTTGCTGAAGATGACGTTGTTCCTTCTTATTGAGGAAATCGGGTCAATC
* *
1042613 TTGAGATAATTTGGAGACAACACGG
196 TAGAGATAATTTAGAGACAACAC-G
** * * * * *
1042638 TTCCTTCGTATTGAGGAAGTATGATTGTCTGAGGATGACACTGCTCCTTTGTGTTGAGTAGATCG
1 TTCCTTCGCGTTGAGGAAGTCTGATTATCTGAGGATGACACTGCTCCTTCGTGTTGAGGAGATCA
1042703 GGTCAA
66 GGTCAA
1042709 AACTAACTAT
Statistics
Matches: 441, Mismatches: 62, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
218 18 0.04
219 228 0.52
220 188 0.43
221 7 0.02
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (219 bp):
TTCCTTCGCGTTGAGGAAGTCTGATTATCTGAGGATGACACTGCTCCTTCGTGTTGAGGAGATCA
GGTCAATCTGGAGATAATTTGATGTTGAAGACGACATTGCTCATCCATGTTGAAGAGATCTGGTC
GTTTTCAGGTAAATTGTTTGCTGAAGATGACGTTGTTCCTTCTTATTGAGGAAATCGGGTCAATC
TAGAGATAATTTAGAGACAACACG
Found at i:1043635 original size:6 final size:6
Alignment explanation
Indices: 1043624--1043718 Score: 68
Period size: 6 Copynumber: 15.5 Consensus size: 6
1043614 TCTTGACCCC
* * * * *
1043624 CTTTTT CTTTTTT ATTTTT GTCTTT CTTTTA CTTTTT CTTTTTT CGTTTT
1 CTTTTT C-TTTTT CTTTTT CTTTTT CTTTTT CTTTTT C-TTTTT CTTTTT
* * *
1043674 CTTTTT CTTTTT GTTTCATT -TTCTT CTTTTT C-TTTT CATTTT CTT
1 CTTTTT CTTTTT CTTT--TT CTTTTT CTTTTT CTTTTT CTTTTT CTT
1043719 CTCTTTAGTT
Statistics
Matches: 70, Mismatches: 13, Indels: 12
0.74 0.14 0.13
Matches are distributed among these distances:
5 7 0.10
6 48 0.69
7 13 0.19
8 2 0.03
ACGTcount: A:0.04, C:0.16, G:0.03, T:0.77
Consensus pattern (6 bp):
CTTTTT
Found at i:1043652 original size:25 final size:25
Alignment explanation
Indices: 1043624--1043709 Score: 90
Period size: 25 Copynumber: 3.4 Consensus size: 25
1043614 TCTTGACCCC
1043624 CTTTTTCTTTTT-TATTTTTGTCTTT
1 CTTTTTCTTTTTCT-TTTTTGTCTTT
*
1043649 CTTTTACTTTTTCTTTTTTCGT-TTT
1 CTTTTTCTTTTTCTTTTTT-GTCTTT
*
1043674 CTTTTTCTTTTTGTTTCATTT-TC-TT
1 CTTTTTCTTTTTCTTT--TTTGTCTTT
1043699 CTTTTTCTTTT
1 CTTTTTCTTTT
1043710 CATTTTCTTC
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
25 47 0.89
26 3 0.06
27 3 0.06
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.78
Consensus pattern (25 bp):
CTTTTTCTTTTTCTTTTTTGTCTTT
Found at i:1043659 original size:17 final size:16
Alignment explanation
Indices: 1043624--1043664 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
1043614 TCTTGACCCC
1043624 CTTTTTC-TT-TTTTA
1 CTTTTTCTTTCTTTTA
*
1043638 TTTTTGTCTTTCTTTTA
1 CTTTT-TCTTTCTTTTA
1043655 CTTTTTCTTT
1 CTTTTTCTTT
1043665 TTTCGTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 4 0.18
15 2 0.09
16 7 0.32
17 9 0.41
ACGTcount: A:0.05, C:0.15, G:0.02, T:0.78
Consensus pattern (16 bp):
CTTTTTCTTTCTTTTA
Found at i:1043668 original size:19 final size:19
Alignment explanation
Indices: 1043646--1043718 Score: 66
Period size: 19 Copynumber: 3.9 Consensus size: 19
1043636 TATTTTTGTC
1043646 TTTC-TTTTACTTTTTCTTT
1 TTTCGTTTT-CTTTTTCTTT
1043665 TTTCGTTTTCTTTTTC-TT
1 TTTCGTTTTCTTTTTCTTT
*
1043683 TTT-G-TTTCATTTTCTTCTT
1 TTTCGTTTTCTTTTTC-T-TT
*
1043702 TTTC-TTTTCATTTTCTT
1 TTTCGTTTTCTTTTTCTT
1043719 CTCTTTAGTT
Statistics
Matches: 47, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
16 9 0.19
17 1 0.02
18 6 0.13
19 17 0.36
20 14 0.30
ACGTcount: A:0.04, C:0.16, G:0.03, T:0.77
Consensus pattern (19 bp):
TTTCGTTTTCTTTTTCTTT
Found at i:1043679 original size:20 final size:19
Alignment explanation
Indices: 1043625--1043718 Score: 68
Period size: 20 Copynumber: 4.7 Consensus size: 19
1043615 CTTGACCCCC
1043625 TTTTTC-TTTT-TTATTTTT
1 TTTTTCATTTTCTT-TTTTT
* *
1043643 GTCTTTC-TTTTACTTTTTCT
1 -TTTTTCATTTT-CTTTTTTT
*
1043663 TTTTTCGTTTTCTTTTTCTTT
1 TTTTTCATTTTC-TTTT-TTT
1043684 TTGTTTCATTTTCTTCTTTTT
1 TT-TTTCATTTTCTT-TTTTT
*
1043705 CTTTTCATTTTCTT
1 TTTTTCATTTTCTT
1043719 CTCTTTAGTT
Statistics
Matches: 62, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
19 15 0.24
20 24 0.39
21 12 0.19
22 11 0.18
ACGTcount: A:0.04, C:0.15, G:0.03, T:0.78
Consensus pattern (19 bp):
TTTTTCATTTTCTTTTTTT
Found at i:1043681 original size:31 final size:30
Alignment explanation
Indices: 1043624--1043718 Score: 95
Period size: 31 Copynumber: 3.1 Consensus size: 30
1043614 TCTTGACCCC
* * *
1043624 CTTTTTCTTTTTTATTTTTGTCTTTCTTTT
1 CTTTTTCTTTTTTCTTTTTCTTTTTCTTTT
*
1043654 ACTTTTTCTTTTTTCGTTTTCTTTTTCTTTT
1 -CTTTTTCTTTTTTCTTTTTCTTTTTCTTTT
*
1043685 -TGTTTCATTTTCTTCTTTTTC-TTTTCATTTT
1 CTTTTTC-TTTT-TTCTTTTTCTTTTTC-TTTT
1043716 CTT
1 CTT
1043719 CTCTTTAGTT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
29 5 0.09
30 9 0.17
31 38 0.72
32 1 0.02
ACGTcount: A:0.04, C:0.16, G:0.03, T:0.77
Consensus pattern (30 bp):
CTTTTTCTTTTTTCTTTTTCTTTTTCTTTT
Found at i:1043723 original size:25 final size:24
Alignment explanation
Indices: 1043624--1043723 Score: 80
Period size: 25 Copynumber: 4.0 Consensus size: 24
1043614 TCTTGACCCC
*
1043624 CTTTTTCTTTTT-TATTTTTGTCTTT
1 CTTTTTCTTTTTCT-TTTTTCTC-TT
* *
1043649 CTTTTACTTTTTCTTTTTTCGTTTT
1 CTTTTTCTTTTTCTTTTTTC-TCTT
*
1043674 CTTTTTCTTTTTGTTTCATTT-TCTT
1 CTTTTTCTTTTTCTTT--TTTCTCTT
1043699 CTTTTTC-TTTTCATTTTCTTCTCTT
1 CTTTTTCTTTTTC-TTTT-TTCTCTT
1043724 TAGTTGTAGT
Statistics
Matches: 61, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
23 1 0.02
24 6 0.10
25 49 0.80
26 2 0.03
27 3 0.05
ACGTcount: A:0.04, C:0.17, G:0.03, T:0.76
Consensus pattern (24 bp):
CTTTTTCTTTTTCTTTTTTCTCTT
Found at i:1049792 original size:22 final size:23
Alignment explanation
Indices: 1049766--1049810 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
1049756 TTGGTAGGGG
*
1049766 GTATCGGTACCATAG-AAGGGTA
1 GTATCGATACCATAGTAAGGGTA
*
1049788 GTATCGATACCATGGTAAGGGTA
1 GTATCGATACCATAGTAAGGGTA
1049811 TCGATACCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.24
Consensus pattern (23 bp):
GTATCGATACCATAGTAAGGGTA
Found at i:1049860 original size:95 final size:96
Alignment explanation
Indices: 1049691--1049875 Score: 246
Period size: 95 Copynumber: 1.9 Consensus size: 96
1049681 CCGAAGAGAC
* *
1049691 AGTATCGATACCATGATAAGGGGTATTGATACCAAGAAACATCGAATCTAATTTTGGTATCGATA
1 AGTATCGATACCATGATAAGGGGTATCGATACCAAGAAACATCGAACCTAATTTTGGTATCGATA
*** * * *
1049756 TTGGTAGGGGGTATCGGTACCATAGAAGGGT
66 ACCGAAGGGGATATCAGTACCATAGAAGGGT
* * * * *
1049787 AGTATCGATACCATGGTAA-GGGTATCGATACCAGGCAACATTGAACCTATTTTTGGTATCGATA
1 AGTATCGATACCATGATAAGGGGTATCGATACCAAGAAACATCGAACCTAATTTTGGTATCGATA
1049851 ACCGAAGGGGATATCAGTACCATAG
66 ACCGAAGGGGATATCAGTACCATAG
1049876 TATAGAAGTA
Statistics
Matches: 76, Mismatches: 13, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
95 58 0.76
96 18 0.24
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (96 bp):
AGTATCGATACCATGATAAGGGGTATCGATACCAAGAAACATCGAACCTAATTTTGGTATCGATA
ACCGAAGGGGATATCAGTACCATAGAAGGGT
Found at i:1049886 original size:95 final size:96
Alignment explanation
Indices: 1049683--1049888 Score: 243
Period size: 95 Copynumber: 2.1 Consensus size: 96
1049673 TATCGATACC
* *
1049683 GAAGAGACAGTATCGATACCATGATAAGGGGTATTGATACCAAGAAACATCGAATCTAATTTTGG
1 GAAGAGA-AGTATCGATACCATGATAAGGGGTATCGATACCAAGAAACATCGAACCTAATTTTGG
*** * * *
1049748 TATCGATATTGGTAGGGGGTATCGGTACCATA
65 TATCGATAACCGAAGGGGATATCAGTACCATA
* * * * * * *
1049780 GAAGGGTAGTATCGATACCATGGTAA-GGGTATCGATACCAGGCAACATTGAACCTATTTTTGGT
1 GAAGAGAAGTATCGATACCATGATAAGGGGTATCGATACCAAGAAACATCGAACCTAATTTTGGT
1049844 ATCGATAACCGAAGGGGATATCAGTACCATA
66 ATCGATAACCGAAGGGGATATCAGTACCATA
* *
1049875 GTATAGAAGTATCG
1 GAAGAGAAGTATCG
1049889 GTACTAGGGT
Statistics
Matches: 90, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
95 67 0.74
96 18 0.20
97 5 0.06
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (96 bp):
GAAGAGAAGTATCGATACCATGATAAGGGGTATCGATACCAAGAAACATCGAACCTAATTTTGGT
ATCGATAACCGAAGGGGATATCAGTACCATA
Found at i:1050306 original size:59 final size:59
Alignment explanation
Indices: 1050241--1050988 Score: 1040
Period size: 59 Copynumber: 12.7 Consensus size: 59
1050231 ATGGCACTAA
1050241 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATAGGGCACTTC
1 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATAGGGCACTTC
* *
1050300 GTGTGCTAAAATGATAAGGATATCATACTAAGTGTATGAATTTCCAGATAGGGCACTTC
1 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATAGGGCACTTC
*
1050359 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATAGGGTACTTC
1 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATAGGGCACTTC
1050418 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATAGGGCACTTC
1 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATAGGGCACTTC
*
1050477 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCTAGATAGGGCACTTC
1 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATAGGGCACTTC
* * *
1050536 GTGTGCTAAAATGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATA-GCCATTTC
1 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATAGGGCACTTC
* * *
1050594 GTGTGCTAAAAAGATAAGGAACTCATACTAAGTGTATGAATTTCCAGATATGGCACTTC
1 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATAGGGCACTTC
* * * * *
1050653 GTGCGCTAAAATGATAAGGAAAACATACTAAGTGTATGAATTTCCAGATAGGACACTTT
1 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATAGGGCACTTC
* * * *
1050712 GTGTGCTAAAATGATAAGGAAATTCATAATAAGTGTATGAATATCCGGATAGGGCACTTC
1 GTGTGCTAAAACGATAAGGAAA-TCATACTAAGTGTATGAATTTCCAGATAGGGCACTTC
* * ** *
1050772 GTGTGCTAAAACGATAAAGAAATCATACTAAGTGTATGAATTTCCATATAGGGCGTTTT
1 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATAGGGCACTTC
* * * * * **
1050831 GTATGCTAAAATGTTAA-GAAATCATACCAAGTGTATGAA-TTCCATATAGGGCGTTTC
1 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATAGGGCACTTC
** * * * * ** *
1050888 GTACGCTAAAA-TATTATGAAATCATACCAAGTGTATGAATTTCCTTATAGGGCATTTTC
1 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATAGGGCA-CTTC
** * *
1050947 -TACGCTAAAACG-TTAGGAAATCATACTAAGCGTATGAATTTC
1 GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTC
1050989 TGTAGGGGTA
Statistics
Matches: 630, Mismatches: 53, Indels: 13
0.91 0.08 0.02
Matches are distributed among these distances:
56 2 0.00
57 49 0.08
58 124 0.20
59 404 0.64
60 51 0.08
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (59 bp):
GTGTGCTAAAACGATAAGGAAATCATACTAAGTGTATGAATTTCCAGATAGGGCACTTC
Found at i:1053463 original size:14 final size:14
Alignment explanation
Indices: 1053444--1053486 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
1053434 GGAAATTAAT
1053444 ATGCAAATGCAAAA
1 ATGCAAATGCAAAA
1053458 ATGCAATGATG-AAAA
1 ATGCAA--ATGCAAAA
1053473 ATGCAGAATGCAAA
1 ATGCA-AATGCAAA
1053487 TGCAAAAGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
14 9 0.36
15 12 0.48
16 4 0.16
ACGTcount: A:0.53, C:0.12, G:0.19, T:0.16
Consensus pattern (14 bp):
ATGCAAATGCAAAA
Found at i:1055622 original size:19 final size:20
Alignment explanation
Indices: 1055585--1055623 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
1055575 GTTGGATGTG
*
1055585 CTCTACTATCTAATTTTCAC
1 CTCTACTATCTAATCTTCAC
*
1055605 CTCTACTA-GTAATCTTCAC
1 CTCTACTATCTAATCTTCAC
1055624 AAGTTTACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.26, C:0.31, G:0.03, T:0.41
Consensus pattern (20 bp):
CTCTACTATCTAATCTTCAC
Found at i:1057909 original size:27 final size:27
Alignment explanation
Indices: 1057865--1057927 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
1057855 TATCAAAGAT
1057865 AAAATAAAATGAAATGAAATAAAAAT-A
1 AAAATAAAATGAAATGAAA-AAAAATCA
** *
1057892 AAAATAAAATGAGGTGAAAAATAATCA
1 AAAATAAAATGAAATGAAAAAAAATCA
*
1057919 AATATAAAA
1 AAAATAAAA
1057928 CAAAAGAAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 5 0.16
27 26 0.84
ACGTcount: A:0.70, C:0.02, G:0.10, T:0.19
Consensus pattern (27 bp):
AAAATAAAATGAAATGAAAAAAAATCA
Found at i:1058585 original size:34 final size:32
Alignment explanation
Indices: 1058525--1058606 Score: 101
Period size: 33 Copynumber: 2.5 Consensus size: 32
1058515 AATTAATAAT
* *
1058525 AACAATAAAAATAAAAATTAGTATGTTAGTTTG
1 AACAAT-AAAATAAAAATTAGAATGTTAGTTCG
*
1058558 AACAAATAAAATAAAAGGTTAGAATGTTAGTTCG
1 AAC-AATAAAATAAAA-ATTAGAATGTTAGTTCG
*
1058592 AACGATAAAATAAAA
1 AACAATAAAATAAAA
1058607 TAAATGTTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
33 23 0.53
34 20 0.47
ACGTcount: A:0.55, C:0.05, G:0.13, T:0.27
Consensus pattern (32 bp):
AACAATAAAATAAAAATTAGAATGTTAGTTCG
Found at i:1060733 original size:17 final size:15
Alignment explanation
Indices: 1060694--1060744 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
1060684 TAGTACTCAT
*
1060694 TTAAAA-TTTAAA-G
1 TTAAAATTTTAAATA
*
1060707 TTAAATTTTTAAAATAA
1 TTAAAATTTT-AAAT-A
1060724 TTAAAATTTTAAATA
1 TTAAAATTTTAAATA
1060739 TTAAAA
1 TTAAAA
1060745 AAAATTAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 5 0.16
14 3 0.10
15 10 0.32
16 4 0.13
17 9 0.29
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (15 bp):
TTAAAATTTTAAATA
Found at i:1060736 original size:25 final size:25
Alignment explanation
Indices: 1060707--1060754 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
1060697 AAATTTAAAG
* * *
1060707 TTAAATTTTTAAAATAATTAAAATT
1 TTAAATATTAAAAAAAATTAAAATT
1060732 TTAAATATTAAAAAAAATTAAAA
1 TTAAATATTAAAAAAAATTAAAA
1060755 CTGATAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (25 bp):
TTAAATATTAAAAAAAATTAAAATT
Found at i:1060745 original size:16 final size:17
Alignment explanation
Indices: 1060707--1060744 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
1060697 AAATTTAAAG
*
1060707 TTAAATTTTTAAAATAA
1 TTAAAATTTTAAAATAA
1060724 TTAAAATTTT-AAAT-A
1 TTAAAATTTTAAAATAA
1060739 TTAAAA
1 TTAAAA
1060745 AAAATTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 7 0.35
16 4 0.20
17 9 0.45
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TTAAAATTTTAAAATAA
Found at i:1073725 original size:24 final size:24
Alignment explanation
Indices: 1073689--1073747 Score: 109
Period size: 24 Copynumber: 2.5 Consensus size: 24
1073679 AATGTGAAGT
*
1073689 GTTGGGCAGATAAGATCTATTGTG
1 GTTGGGCAAATAAGATCTATTGTG
1073713 GTTGGGCAAATAAGATCTATTGTG
1 GTTGGGCAAATAAGATCTATTGTG
1073737 GTTGGGCAAAT
1 GTTGGGCAAAT
1073748 CTTCCTTCGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.27, C:0.08, G:0.32, T:0.32
Consensus pattern (24 bp):
GTTGGGCAAATAAGATCTATTGTG
Found at i:1078174 original size:11 final size:11
Alignment explanation
Indices: 1078158--1078182 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1078148 GATATAAGGA
1078158 AAAGCAAAAAT
1 AAAGCAAAAAT
1078169 AAAGCAAAAAT
1 AAAGCAAAAAT
1078180 AAA
1 AAA
1078183 CAAGTTAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAGCAAAAAT
Found at i:1095721 original size:769 final size:760
Alignment explanation
Indices: 1094214--1095739 Score: 2907
Period size: 769 Copynumber: 2.0 Consensus size: 760
1094204 AGCTCGGAAG
1094214 AGTATACTTTAACCATCCTAATATGGCTCGACTGCTCTCAAGAATACTGCTATTGGTTTGTATTC
1 AGTATACTTTAACCATCCTAATATGGCTCGACTGCTCTCAAGAATACTGCTATTGGTTTGTATTC
1094279 GATTTAATGTATATTAGCATAATTTTTGTCGAAATCCTTCAGTTGTTTTACATTTTTGTACTTGC
66 GATTTAATGTATATTAGCATAATTTTTGTCGAAATCCTTCAGTTGTTTTACATTTTTGTACTTGC
1094344 AGCGTATCTTGCATCTCTTGAAGATCCAGAGATAACAGAGCTTGTACTTCGTGAGTATACCGCAC
131 AGCGTATCTTGCATCTCTTGAAGATCCAGAGATAACAGAGCTTGTACTTCGTGAGTATACCGCAC
1094409 AATATGACAGACCAATTTGCAGCTTTGGCAGCCATTGCCCAGAATCCTGGTAAAACTCGAGACGA
196 AATATGACAGACCAATTTGCAGCTTTGGCAGCCATTGCCCAGAATCCTGGTAAAACTCGAGACGA
1094474 TGTTTTGGCAGACTTCTATAGCAAGTGGCAGCATTACCTCGTAAATTTCCTACTTGACTTCCCTT
261 TGTTTTGGCAGACTTCTATAGCAAGTGGCAGCATTACCTCGTAAATTTCCTACTTGACTTCCCTT
1094539 TGCCTACTGGAATGTAGTTTGAACTTTTCTCACATTGGATAATTTTATTTTTACCCTTTTGTAGG
326 TGCCTACTGGAATGTAGTTTGAACTTTTCTCACATTGGATAATTTTATTTTTACCCTTTTGTAGG
1094604 TTGTAAACAATGGTTGCCCTTCAAGCAATGTCTGACATTCCTGGCAATGTAGAGAATGTTCGCAA
391 TTGTAAACAATGGTTGCCCTTCAAGCAATGTCTGACATTCCTGGCAATGTAGAGAATGTTCGCAA
1094669 TCTCTTGAATCATCCAGCATTCGACCTGCGTAATCCAAACAAGGTGGTTGATAACATAAACATAG
456 TCTCTTGAATCATCCAGCATTCGACCTGCGTAATCCAAACAAGGTGGTTGATAACATAAACATAG
1094734 AAGATAACTTTTTCTCTTCAACTTAAATTCAAGCACTTCAATGAATGTGGTTTTTTGTTTTTAAT
521 AAGATAACTTTTTCTCTTCAACTTAAATTCAAGCACTTCAATGAATGTGGTTTTTTGTTTTTAAT
1094799 ATTAGGTATACTCGCTCATTGGAGGATTTCGTGGATCTCCTGTGAATTTCCATGCCAAGGATGGG
586 ATTAGGTATACTCGCTCATTGGAGGATTTCGTGGATCTCCTGTGAATTTCCATGCCAAGGATGGG
1094864 TCTGGTTACAAGTTTTTGGGTTGAAATAGTTTTACACACTGACAAAATAAATCCTCAGGTTCGTT
651 TCTGGTTACAAGTTTTTGGGTTGAAATAGTTTTACACACTGACAAAATAAATCCTCAGGTTCGTT
1094929 AACATTCGACTCTTGCCTCCTTTTGTGC-TTACGTTGAAAAAGGA
716 AACATTCGACTCTTGCCTCCTTTTGTGCTTTACGTTGAAAAAGGA
1094973 AGTATACATTTAACCATCCTAATATGGCTCGACGTGCTCTCAAGAATACTGCTATTGGTTTGTAT
1 AGTATAC-TTTAACCATCCTAATATGGCTCGAC-TGCTCTCAAGAATACTGCTATTGGTTTGTAT
1095038 TCGATTTAATGTATATTAGCATAATTTTTGTCGAAATCCTTCAGTTGTTTTACATTTTTGTACTT
64 TCGATTTAATGTATATTAGCATAATTTTTGTCGAAATCCTTCAGTTGTTTTACATTTTTGTACTT
1095103 GCAGCGTATCTTGCATCTCTTGAAGATCCAGAGATAACAGAGCTTGTACTTCGTGAGTATAATAC
129 GCAGCGTATCTTGCATCTCTTGAAGATCCAGAGATAACAGAGCTTGTACTTCGTGAG--T-ATAC
1095168 CGCAACAAATATGACAGACCAATTTGCAGCTTTGGCAGCCATTGCCCAGAATCCTGGTAAAACTC
191 CGC-AC-AATATGACAGACCAATTTGCAGCTTTGGCAGCCATTGCCCAGAATCCTGGTAAAACTC
1095233 GAGACGATGTTTTGGCAGACTTCTATAGCAAGTGGCAGCATGATTACCTCGTAAATTTCCTACTT
254 GAGACGATGTTTTGGCAGACTTCTATAGCAAGTGGCAGC---ATTACCTCGTAAATTTCCTACTT
1095298 GACTTCCCTTTGCCTACTGGAATGTAGTTTGAACTTTTCTCACATTGGATAATTTTATTTTTACC
316 GACTTCCCTTTGCCTACTGGAATGTAGTTTGAACTTTTCTCACATTGGATAATTTTATTTTTACC
1095363 CTTTTGTAGGTTGTAAACAAATGGTTTGCCCTTCAAGCAATGTCTGACATTCCTGGCAATGTAGA
381 CTTTTGTAGGTTGTAAAC-AATGG-TTGCCCTTCAAGCAATGTCTGACATTCCTGGCAATGTAGA
1095428 GAATGTTCGCAATCTCTTGAATCATCCAGCATTCGACCTGCGTAATCCAAACAAGGTGGTTGATA
444 GAATGTTCGCAATCTCTTGAATCATCCAGCATTCGACCTGCGTAATCCAAACAAGGTGGTTGATA
1095493 ACATAAACATAGAAGATAACTTTTTCTCTTCAACTTAAATTCAAGCACTTCAATGAATGTGG-TT
509 ACATAAACATAGAAGATAACTTTTTCTCTTCAACTTAAATTCAAGCACTTCAATGAATGTGGTTT
1095557 TTTGTTTTTAATATTAGGTATACTCGCTCATTGGAGGATTTCGTGGATCTCCTGTGAATTTCCAT
574 TTTGTTTTTAATATTAGGTATACTCGCTCATTGGAGGATTTCGTGGATCTCCTGTGAATTTCCAT
1095622 GCCAAGGATGGGTCTGGTTACAAGTTTTTGGG-TGAAATAGTTTTACA-ACTGGACAAAATAAAT
639 GCCAAGGATGGGTCTGGTTACAAGTTTTTGGGTTGAAATAGTTTTACACACT-GACAAAATAAAT
1095685 CCTCAGGTTCGTTAACATTCGACTCTTGCCTCCTTTTGTGCTTTACGTTGAAAAA
703 CCTCAGGTTCGTTAACATTCGACTCTTGCCTCCTTTTGTGCTTTACGTTGAAAAA
1095740 CGAAAGACTC
Statistics
Matches: 753, Mismatches: 0, Indels: 17
0.98 0.00 0.02
Matches are distributed among these distances:
759 7 0.01
760 25 0.03
761 153 0.20
763 1 0.00
764 7 0.01
765 2 0.00
766 97 0.13
768 3 0.00
769 174 0.23
770 117 0.16
771 167 0.22
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (760 bp):
AGTATACTTTAACCATCCTAATATGGCTCGACTGCTCTCAAGAATACTGCTATTGGTTTGTATTC
GATTTAATGTATATTAGCATAATTTTTGTCGAAATCCTTCAGTTGTTTTACATTTTTGTACTTGC
AGCGTATCTTGCATCTCTTGAAGATCCAGAGATAACAGAGCTTGTACTTCGTGAGTATACCGCAC
AATATGACAGACCAATTTGCAGCTTTGGCAGCCATTGCCCAGAATCCTGGTAAAACTCGAGACGA
TGTTTTGGCAGACTTCTATAGCAAGTGGCAGCATTACCTCGTAAATTTCCTACTTGACTTCCCTT
TGCCTACTGGAATGTAGTTTGAACTTTTCTCACATTGGATAATTTTATTTTTACCCTTTTGTAGG
TTGTAAACAATGGTTGCCCTTCAAGCAATGTCTGACATTCCTGGCAATGTAGAGAATGTTCGCAA
TCTCTTGAATCATCCAGCATTCGACCTGCGTAATCCAAACAAGGTGGTTGATAACATAAACATAG
AAGATAACTTTTTCTCTTCAACTTAAATTCAAGCACTTCAATGAATGTGGTTTTTTGTTTTTAAT
ATTAGGTATACTCGCTCATTGGAGGATTTCGTGGATCTCCTGTGAATTTCCATGCCAAGGATGGG
TCTGGTTACAAGTTTTTGGGTTGAAATAGTTTTACACACTGACAAAATAAATCCTCAGGTTCGTT
AACATTCGACTCTTGCCTCCTTTTGTGCTTTACGTTGAAAAAGGA
Found at i:1098591 original size:105 final size:102
Alignment explanation
Indices: 1098386--1098592 Score: 387
Period size: 105 Copynumber: 2.0 Consensus size: 102
1098376 ATACCCTCAA
1098386 TAGGGGTATCGATATTGAGATATTTTTCAAAACATCGAATCTAATTTTGGTGATACTTAGGATAT
1 TAGGGGTATCGATATTGAGATATTTTTCAAAACATCGAATCTAATTTTGGTGATACTTAGGATAT
1098451 TATCAATACCCTAGTTCAGAAGTATTGATACTCGGTC
66 TATCAATACCCTAGTTCAGAAGTATTGATACTCGGTC
1098488 TAGGGGTATCGATATTGAGATATTTTTCAAAACATCGAATCTAATTTTGGTATTGATACTTAGGA
1 TAGGGGTATCGATATTGAGATATTTTTCAAAACATCGAATCTAATTTTGG---TGATACTTAGGA
1098553 TATTATCAATACCCTAGTTCAGAAGTATTGATACTCGGTC
63 TATTATCAATACCCTAGTTCAGAAGTATTGATACTCGGTC
1098593 CAAGAGTATC
Statistics
Matches: 102, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
102 50 0.49
105 52 0.51
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (102 bp):
TAGGGGTATCGATATTGAGATATTTTTCAAAACATCGAATCTAATTTTGGTGATACTTAGGATAT
TATCAATACCCTAGTTCAGAAGTATTGATACTCGGTC
Found at i:1113839 original size:149 final size:149
Alignment explanation
Indices: 1113656--1113954 Score: 598
Period size: 149 Copynumber: 2.0 Consensus size: 149
1113646 TTGGCTTTAA
1113656 TCTAATTTAATTGAATTTTAAATTCAATTCATGTGAAATACAAAAATTTCCATTAATGAATCTGG
1 TCTAATTTAATTGAATTTTAAATTCAATTCATGTGAAATACAAAAATTTCCATTAATGAATCTGG
1113721 GTAATTACCAATTTCCATTGCAATATATTCCATCAAAATATTCCATAGTCAAAGATGACCTAATT
66 GTAATTACCAATTTCCATTGCAATATATTCCATCAAAATATTCCATAGTCAAAGATGACCTAATT
1113786 TGACTTTAACTTTCTACTT
131 TGACTTTAACTTTCTACTT
1113805 TCTAATTTAATTGAATTTTAAATTCAATTCATGTGAAATACAAAAATTTCCATTAATGAATCTGG
1 TCTAATTTAATTGAATTTTAAATTCAATTCATGTGAAATACAAAAATTTCCATTAATGAATCTGG
1113870 GTAATTACCAATTTCCATTGCAATATATTCCATCAAAATATTCCATAGTCAAAGATGACCTAATT
66 GTAATTACCAATTTCCATTGCAATATATTCCATCAAAATATTCCATAGTCAAAGATGACCTAATT
1113935 TGACTTTAACTTTCTACTT
131 TGACTTTAACTTTCTACTT
1113954 T
1 T
1113955 GGCCATGAAA
Statistics
Matches: 150, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
149 150 1.00
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (149 bp):
TCTAATTTAATTGAATTTTAAATTCAATTCATGTGAAATACAAAAATTTCCATTAATGAATCTGG
GTAATTACCAATTTCCATTGCAATATATTCCATCAAAATATTCCATAGTCAAAGATGACCTAATT
TGACTTTAACTTTCTACTT
Found at i:1117688 original size:16 final size:16
Alignment explanation
Indices: 1117667--1117720 Score: 99
Period size: 16 Copynumber: 3.4 Consensus size: 16
1117657 ATAAAATTAT
1117667 AAATATGTATTAACAC
1 AAATATGTATTAACAC
1117683 AAATATGTATTAACAC
1 AAATATGTATTAACAC
*
1117699 AAATATGTATTAACAA
1 AAATATGTATTAACAC
1117715 AAATAT
1 AAATAT
1117721 AATTAGATTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.54, C:0.09, G:0.06, T:0.31
Consensus pattern (16 bp):
AAATATGTATTAACAC
Found at i:1120250 original size:19 final size:20
Alignment explanation
Indices: 1120202--1120241 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
1120192 TCGAGTCATC
*
1120202 TTAATTAAAAATATTAAAGT
1 TTAAATAAAAATATTAAAGT
1120222 TTAAATAAAAAT-TTAAAGT
1 TTAAATAAAAATATTAAAGT
1120241 T
1 T
1120242 CAATCAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (20 bp):
TTAAATAAAAATATTAAAGT
Found at i:1121646 original size:11 final size:11
Alignment explanation
Indices: 1121630--1121672 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
1121620 CTTTGGACCT
1121630 AAAATAAAATA
1 AAAATAAAATA
1121641 AAAATAAAATA
1 AAAATAAAATA
* * *
1121652 GAATTAAATAAA
1 AAAATAAA-ATA
1121664 AAAATAAAA
1 AAAATAAAA
1121673 AATTAAATGA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 18 0.69
12 8 0.31
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:1121650 original size:16 final size:17
Alignment explanation
Indices: 1121629--1121672 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
1121619 ACTTTGGACC
1121629 TAAAATAAAATAAA-AA
1 TAAAATAAAATAAATAA
*
1121645 TAAAATAGAATTAAATAA
1 TAAAATA-AAATAAATAA
*
1121663 AAAAATAAAA
1 TAAAATAAAA
1121673 AATTAAATGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
16 7 0.30
17 8 0.35
18 8 0.35
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.20
Consensus pattern (17 bp):
TAAAATAAAATAAATAA
Found at i:1121671 original size:29 final size:27
Alignment explanation
Indices: 1121630--1121703 Score: 78
Period size: 30 Copynumber: 2.6 Consensus size: 27
1121620 CTTTGGACCT
*
1121630 AAAATAAAATAAAAATAAAATAGAATTAA
1 AAAAGAAAATAAAAATAAAAT-GAA-TAA
*
1121659 ATAAA-AAAATAAAAAATTAAATGAATAA
1 A-AAAGAAAAT-AAAAATAAAATGAATAA
*
1121687 AAAAGAAAAGAAAAATA
1 AAAAGAAAATAAAAATA
1121704 TAAAATATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
27 9 0.23
28 8 0.21
29 9 0.23
30 13 0.33
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (27 bp):
AAAAGAAAATAAAAATAAAATGAATAA
Found at i:1121709 original size:29 final size:30
Alignment explanation
Indices: 1121640--1121710 Score: 85
Period size: 28 Copynumber: 2.4 Consensus size: 30
1121630 AAAATAAAAT
*
1121640 AAAAATAAAATAGAATTAAATAAAAAAATA
1 AAAAATAAAATAGAATTAAATAAAAAAAGA
*
1121670 AAAAATTAAAT-GAA-TAAA-AAAGAAAAGA
1 AAAAATAAAATAGAATTAAATAAA-AAAAGA
1121698 AAAATATAAAATA
1 AAAA-ATAAAATA
1121711 TAAAATATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
27 3 0.09
28 13 0.37
29 9 0.26
30 10 0.29
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (30 bp):
AAAAATAAAATAGAATTAAATAAAAAAAGA
Found at i:1121731 original size:17 final size:17
Alignment explanation
Indices: 1121709--1121742 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1121699 AAATATAAAA
*
1121709 TATAAAATATATATTTT
1 TATAAAATACATATTTT
*
1121726 TATAAATTACATATTTT
1 TATAAAATACATATTTT
1121743 CGAAAATTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
TATAAAATACATATTTT
Found at i:1121755 original size:43 final size:44
Alignment explanation
Indices: 1121708--1121797 Score: 105
Period size: 44 Copynumber: 2.1 Consensus size: 44
1121698 AAAATATAAA
* * *
1121708 ATATAAAATATA-TAT-TTTTATAAATTAC-ATATTTTCGAAAATT
1 ATATAAAATATATTATATTTTA-AAA-AACTAAATTTTCAAAAATT
*
1121751 ATATAATATATATTATATTTTAAAAAACTAAATTTTCAAAAATT
1 ATATAAAATATATTATATTTTAAAAAACTAAATTTTCAAAAATT
1121795 ATA
1 ATA
1121798 CATTATATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
43 13 0.32
44 22 0.55
45 5 0.12
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.44
Consensus pattern (44 bp):
ATATAAAATATATTATATTTTAAAAAACTAAATTTTCAAAAATT
Found at i:1121846 original size:29 final size:30
Alignment explanation
Indices: 1121800--1121858 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
1121790 AAATTATACA
* *
1121800 TTATATATGTTTTCAAAAATTATA-TATAT
1 TTATATATATTTTCAAAAACTATATTATAT
*
1121829 TTATATATATTTTTAAAAACTATATTATAT
1 TTATATATATTTTCAAAAACTATATTATAT
1121859 GTTTTCAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (30 bp):
TTATATATATTTTCAAAAACTATATTATAT
Found at i:1121847 original size:55 final size:55
Alignment explanation
Indices: 1121803--1121921 Score: 151
Period size: 55 Copynumber: 2.3 Consensus size: 55
1121793 TTATACATTA
** *
1121803 TATATGTTTTCAA-AA-AT-TA-TATATATTTATATATATTTTTAAAAACTATAT
1 TATATGTTTTCAACAACATATATTATATATAGATATATATTTTCAAAAACTATAT
*
1121854 TATATGTTTTCAACAACATATATTATATATAGATATATATTTTC-AAAACTACA-
1 TATATGTTTTCAACAACATATATTATATATAGATATATATTTTCAAAAACTATAT
*
1121907 TATATATTTTCAACA
1 TATATGTTTTCAACA
1121922 CTACTCCCAG
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
51 13 0.22
52 2 0.03
53 16 0.27
54 10 0.17
55 18 0.31
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.46
Consensus pattern (55 bp):
TATATGTTTTCAACAACATATATTATATATAGATATATATTTTCAAAAACTATAT
Found at i:1121863 original size:22 final size:23
Alignment explanation
Indices: 1121832--1121883 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
1121822 TATATATTTA
*
1121832 TATATATTTTTAAAAAC-TATAT
1 TATATATTTTCAAAAACATATAT
* *
1121854 TATATGTTTTCAACAACATATAT
1 TATATATTTTCAAAAACATATAT
1121877 TATATAT
1 TATATAT
1121884 AGATATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 14 0.56
23 11 0.44
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.48
Consensus pattern (23 bp):
TATATATTTTCAAAAACATATAT
Found at i:1121879 original size:23 final size:20
Alignment explanation
Indices: 1121830--1121881 Score: 61
Period size: 23 Copynumber: 2.5 Consensus size: 20
1121820 TATATATATT
1121830 TATA-TATATTTTTAAAAAC
1 TATATTATATTTTTAAAAAC
*
1121849 TATATTATATGTTTTCAACAAC
1 TATATTATAT-TTTT-AAAAAC
1121871 ATATATTATAT
1 -TATATTATAT
1121882 ATAGATATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 4 0.14
20 5 0.18
21 4 0.14
22 5 0.18
23 10 0.36
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.48
Consensus pattern (20 bp):
TATATTATATTTTTAAAAAC
Found at i:1121911 original size:20 final size:20
Alignment explanation
Indices: 1121886--1121925 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
1121876 TTATATATAG
1121886 ATATATATTTTCAAAACTAC
1 ATATATATTTTCAAAACTAC
*
1121906 ATATATATTTTCAACACTAC
1 ATATATATTTTCAAAACTAC
1121926 TCCCAGGACG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.40
Consensus pattern (20 bp):
ATATATATTTTCAAAACTAC
Found at i:1122432 original size:14 final size:14
Alignment explanation
Indices: 1122415--1122442 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1122405 CCTCTCGACC
1122415 AAAAGACCTCGATT
1 AAAAGACCTCGATT
1122429 AAAAGACCTCGATT
1 AAAAGACCTCGATT
1122443 TTATGCTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.14, T:0.21
Consensus pattern (14 bp):
AAAAGACCTCGATT
Found at i:1124679 original size:201 final size:201
Alignment explanation
Indices: 1124035--1124723 Score: 480
Period size: 201 Copynumber: 3.4 Consensus size: 201
1124025 TCGAGCTTAG
* * * * *
1124035 TGAAATCAAACTCATAAGTTTTTGCTCGACAAT-A-AGCTCTTCTCACGTTAAGCTATGTTGAAA
1 TGAAATCAAACTCAAAAGATTTTACTC-A-AATAATAGCTCTTCTCACCTTAAGCTATG-TCAAA
* * * * * ** ** * *
1124098 -TTTGACTGGGAAATGGTTCTTTATTACCAATTCATAGTCAACCTAGATATTCTTCTTGGAC-TA
63 TTTTGACTGGGAAGTGGTTCATTGTTACCAAATCACAACCAAAATAGGTATTCTTCTTAG-CTTA
* * * * ** * * * * ***
1124161 AAAACCTCAGTTTGAATTTTGATCGGAAGGTATTTCCTTA-CTGCTACCATAC-GATCGATGTGC
127 AAGACCTTAATTTGAATTTTGACCAAAAGATAGTTCC-TAGCTGCTACCATGCTG-TCAATACAC
* *
1124224 GATCGAGCTGAA
190 CATCGAACTGAA
* * ** * * * * *
1124236 TGGAGTCAAACTCGGAAGCTTTTACTTGACA-AATAGCTCTTCTCACTTTAAGCTAGCTATGTTA
1 TGAAATCAAACTCAAAAGATTTTAC-TCAAATAATAGCTCTTCTCACCTT-A---AGCTATGTCA
*** * * *
1124300 AATTTTGACTGGGAAACAGTTCCTTGTTACCAAATCACATCCAAAATAGGTCTTCTTCTTAGCTT
61 AATTTTGACTGGGAAGTGGTTCATTGTTACCAAATCACAACCAAAATAGGTATTCTTCTTAGCTT
* * ** * *
1124365 GAAGACCTTAATTTGAATTTTGATCGGAAGATAGTTCCTCGCTGCTACCATGCTGTCAATACGCC
126 AAAGACCTTAATTTGAATTTTGACCAAAAGATAGTTCCTAGCTGCTACCATGCTGTCAATACACC
* * *
1124430 CTCGAGCTGAG
191 ATCGAACTGAA
* * * *
1124441 TGAAATCAAACTCGAAAGATTTTACTTAAATAATAGCTCTTCTTACCTTAAGCTATGTCAAAATT
1 TGAAATCAAACTCAAAAGATTTTACTCAAATAATAGCTCTTCTCACCTTAAGCTATGTCAAATTT
* * * ** * * *
1124506 TGACTGGGAAGTGGTTCATTGTTTCTAAATCGCAACCAACCTAGGTATTCTTCTTGGTTTAAAGG
66 TGACTGGGAAGTGGTTCATTGTTACCAAATCACAACCAAAATAGGTATTCTTCTTAGCTTAAAGA
* * * * *
1124571 CCTTATTTTGAATTTTGACCAAAAGGTAGTTCGTAGCTGCTACTATGC-GATCAATGCACCATCG
131 CCTTAATTTGAATTTTGACCAAAAGATAGTTCCTAGCTGCTACCATGCTG-TCAATACACCATCG
1124635 AACTGAA
195 AACTGAA
* * * * *
1124642 T-AGAATCGAACTCAAAATATTTTTCTCAACA-AATAGCTCTTCTCACCTTAAGGTGTGTCAAAT
1 TGA-AATCAAACTCAAAAGATTTTACTCAA-ATAATAGCTCTTCTCACCTTAAGCTATGTCAAAT
*
1124705 TTTGACAGGGAAGTGGTTC
64 TTTGACTGGGAAGTGGTTC
1124724 CTCCAAGTGA
Statistics
Matches: 388, Mismatches: 85, Indels: 30
0.77 0.17 0.06
Matches are distributed among these distances:
200 4 0.01
201 221 0.57
202 3 0.01
204 10 0.03
205 149 0.38
206 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (201 bp):
TGAAATCAAACTCAAAAGATTTTACTCAAATAATAGCTCTTCTCACCTTAAGCTATGTCAAATTT
TGACTGGGAAGTGGTTCATTGTTACCAAATCACAACCAAAATAGGTATTCTTCTTAGCTTAAAGA
CCTTAATTTGAATTTTGACCAAAAGATAGTTCCTAGCTGCTACCATGCTGTCAATACACCATCGA
ACTGAA
Found at i:1129839 original size:14 final size:14
Alignment explanation
Indices: 1129820--1129859 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
1129810 GCGTATCAAT
1129820 ATAAATAAAATTAA
1 ATAAATAAAATTAA
*
1129834 ATAAATGAAATTAA
1 ATAAATAAAATTAA
* *
1129848 AAAAATCAAATT
1 ATAAATAAAATT
1129860 GCATTAAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (14 bp):
ATAAATAAAATTAA
Found at i:1131290 original size:2 final size:2
Alignment explanation
Indices: 1131278--1131336 Score: 57
Period size: 2 Copynumber: 30.0 Consensus size: 2
1131268 TTTGAAAGTC
* * * *
1131278 TA TA T- TA TA TA TA TA TT TA AA TA TA TA TA TA TA TA TT TA AA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
1131319 TA TA TA TT TA AA TA TA TA
1 TA TA TA TA TA TA TA TA TA
1131337 CAAATACTAA
Statistics
Matches: 44, Mismatches: 12, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1131303 original size:12 final size:12
Alignment explanation
Indices: 1131286--1131336 Score: 74
Period size: 12 Copynumber: 4.6 Consensus size: 12
1131276 TCTATATTAT
1131286 ATATATATTTAA
1 ATATATATTTAA
1131298 ATATATA--T--
1 ATATATATTTAA
1131306 ATATATATTTAA
1 ATATATATTTAA
1131318 ATATATATTTAA
1 ATATATATTTAA
1131330 ATATATA
1 ATATATA
1131337 CAAATACTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
8 7 0.20
10 2 0.06
12 26 0.74
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
ATATATATTTAA
Found at i:1131308 original size:20 final size:20
Alignment explanation
Indices: 1131278--1131325 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
1131268 TTTGAAAGTC
1131278 TATATTATATATATATTTAAA
1 TATA-TATATATATATTTAAA
1131299 TATATATATATATATTTAAA
1 TATATATATATATATTTAAA
1131319 TATATAT
1 TATATAT
1131326 TTAAATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 23 0.85
21 4 0.15
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
TATATATATATATATTTAAA
Found at i:1131333 original size:20 final size:20
Alignment explanation
Indices: 1131278--1131333 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
1131268 TTTGAAAGTC
*
1131278 TATATTATATATATATTTAAA
1 TATA-TATATAAATATTTAAA
*
1131299 TATATATATATATATTTAAA
1 TATATATATAAATATTTAAA
*
1131319 TATATATTTAAATAT
1 TATATATATAAATAT
1131334 ATACAAATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
20 29 0.88
21 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
TATATATATAAATATTTAAA
Found at i:1158384 original size:20 final size:20
Alignment explanation
Indices: 1158355--1158414 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
1158345 CAACATACAC
1158355 AATTACAAGCGACCACACAA
1 AATTACAAGCGACCACACAA
*
1158375 AATTAAAAGCGACCACACAA
1 AATTACAAGCGACCACACAA
1158395 AATTACAAGCGACCACACAA
1 AATTACAAGCGACCACACAA
1158415 CTTCCTCTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.52, C:0.28, G:0.10, T:0.10
Consensus pattern (20 bp):
AATTACAAGCGACCACACAA
Found at i:1163935 original size:54 final size:54
Alignment explanation
Indices: 1163858--1163985 Score: 195
Period size: 54 Copynumber: 2.4 Consensus size: 54
1163848 ATCACTTCAA
* *
1163858 GGAGTA-GAACTTGAACAATCTTCTGTTTACGGGTTCGCCCCCTCTTTCTTTAG
1 GGAGTAGGAACTCGAACAATCTTCTGCTTACGGGTTCGCCCCCTCTTTCTTTAG
* *
1163911 GGAGTAGGAACTCGAACGATCTTCTGCTTACGGGTTCGCTCCCTCTTTCTTTAG
1 GGAGTAGGAACTCGAACAATCTTCTGCTTACGGGTTCGCCCCCTCTTTCTTTAG
* *
1163965 GGAGTAGGCACTCGAATAATC
1 GGAGTAGGAACTCGAACAATC
1163986 ATCAACGAAC
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
53 6 0.09
54 61 0.91
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (54 bp):
GGAGTAGGAACTCGAACAATCTTCTGCTTACGGGTTCGCCCCCTCTTTCTTTAG
Found at i:1164046 original size:55 final size:54
Alignment explanation
Indices: 1163974--1164592 Score: 828
Period size: 55 Copynumber: 11.3 Consensus size: 54
1163964 GGGAGTAGGC
* * * *
1163974 ACTCGAATAATCATCAACGAACGTGCCTGCTCCCTATTTGTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAAC-AACGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAG
1164029 ACTCGAACAATCTTCAACGAACGTG-CTTGCTCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAAC-AACGTGTC-TGCTCCCTATTTCTTCAGAGAGTATAAG
* * * *
1164084 ACTCGAATAATCTTCATCAACCGCGTCTGCTCCCTATTTCTTCAGAGAGTTTAAG
1 ACTCGAACAATCTTCAACAA-CGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAG
* * *
1164139 ACTCGATCAATCTTCATCAACCTCGTCTGCTCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACAACGT-GTCTGCTCCCTATTTCTTCAGAGAGTATAAG
* * * * *
1164194 ACTTGAAAAATCTTCATCAATCGCGTCTGCTCCCTATTTCTTCAGAGAGTTTAAG
1 ACTCGAACAATCTTCAACAA-CGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAG
* * * *
1164249 ACTCGATCAATCTTCATCAACCGCGTCTGCTCCCTATTTCTTTAGAGAGTATAAG
1 ACTCGAACAATCTTCAACAA-CGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAG
* * * * *
1164304 ACTTGACCAATCTTTAACGAACGTGCCTGCTCCCTATTTCTTCAGAGCGTATAAG
1 ACTCGAACAATCTTCAAC-AACGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAG
*
1164359 ACTCGAACAATCTTCAACGAACGTGCCTGCTCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAAC-AACGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAG
* *
1164414 ACTCGAACAATCTTCAACAATCATGTCTGCTCCCTATTTCTTCAGAGAATATAAG
1 ACTCGAACAATCTTCAACAA-CGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAG
* *
1164469 AATC-AGACAATCTTCAACAAACGTGCCTGCTCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGA-ACAATCTTCAAC-AACGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAG
1164524 ACTCGAACAATCTTCAACAATCGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAG
1 ACTCGAACAATCTTCAACAA-CGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAG
*
1164579 ACTCAAACAATCTT
1 ACTCGAACAATCTT
1164593 GATGCTTCAA
Statistics
Matches: 507, Mismatches: 46, Indels: 22
0.88 0.08 0.04
Matches are distributed among these distances:
54 9 0.02
55 491 0.97
56 7 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.31
Consensus pattern (54 bp):
ACTCGAACAATCTTCAACAACGTGTCTGCTCCCTATTTCTTCAGAGAGTATAAG
Found at i:1180087 original size:21 final size:21
Alignment explanation
Indices: 1180045--1180114 Score: 99
Period size: 21 Copynumber: 3.4 Consensus size: 21
1180035 CACTGAAGTG
1180045 CCACATAATTG-TCC-GAAGGA
1 CCACATAATTGTTCCAG-AGGA
1180065 CCACATAATTGTTCCAGAGGA
1 CCACATAATTGTTCCAGAGGA
* *
1180086 CCACATAATTATCCCAGAGGA
1 CCACATAATTGTTCCAGAGGA
1180107 CCACATAA
1 CCACATAA
1180115 AACCTCGACT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
20 11 0.24
21 34 0.74
22 1 0.02
ACGTcount: A:0.37, C:0.27, G:0.16, T:0.20
Consensus pattern (21 bp):
CCACATAATTGTTCCAGAGGA
Found at i:1185718 original size:21 final size:21
Alignment explanation
Indices: 1185692--1185762 Score: 133
Period size: 21 Copynumber: 3.4 Consensus size: 21
1185682 CACCAAAATG
1185692 CCACATAATTGTCCTGAAGGA
1 CCACATAATTGTCCTGAAGGA
1185713 CCACATAATTGTCCTGAAGGA
1 CCACATAATTGTCCTGAAGGA
*
1185734 CCACATAATTGTCCCGAAGGA
1 CCACATAATTGTCCTGAAGGA
1185755 CCACATAA
1 CCACATAA
1185763 AAATCCCGGA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (21 bp):
CCACATAATTGTCCTGAAGGA
Found at i:1185769 original size:21 final size:21
Alignment explanation
Indices: 1185692--1185785 Score: 80
Period size: 21 Copynumber: 4.5 Consensus size: 21
1185682 CACCAAAATG
** *
1185692 CCACATAATTGTCCTGAAGGA
1 CCACATAAAAGTCCCGAAGGA
** *
1185713 CCACATAATTGTCCTGAAGGA
1 CCACATAAAAGTCCCGAAGGA
**
1185734 CCACATAATTGTCCCGAAGGA
1 CCACATAAAAGTCCCGAAGGA
* *
1185755 CCACATAAAAATCCCGGAGGA
1 CCACATAAAAGTCCCGAAGGA
**
1185776 GGACATAAAA
1 CCACATAAAA
1185786 CACTCGACTC
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 66 1.00
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.18
Consensus pattern (21 bp):
CCACATAAAAGTCCCGAAGGA
Found at i:1185783 original size:42 final size:42
Alignment explanation
Indices: 1185692--1185775 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
1185682 CACCAAAATG
* *** *
1185692 CCACATAATTGTCCTGAAGGACCACATAATTGTCCTGAAGGA
1 CCACATAATTGTCCCGAAGGACCACATAAAAATCCCGAAGGA
*
1185734 CCACATAATTGTCCCGAAGGACCACATAAAAATCCCGGAGGA
1 CCACATAATTGTCCCGAAGGACCACATAAAAATCCCGAAGGA
1185776 GGACATAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.36, C:0.26, G:0.19, T:0.19
Consensus pattern (42 bp):
CCACATAATTGTCCCGAAGGACCACATAAAAATCCCGAAGGA
Found at i:1191603 original size:2 final size:2
Alignment explanation
Indices: 1191596--1191632 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
1191586 TTACCATTTC
1191596 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1191633 TAGTATAGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1195220 original size:2 final size:2
Alignment explanation
Indices: 1195213--1195262 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
1195203 TACATATCAA
1195213 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1195255 AT AT AT AT
1 AT AT AT AT
1195263 TAATGTCAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1204411 original size:21 final size:21
Alignment explanation
Indices: 1204381--1204432 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
1204371 ATTCATCCGG
1204381 TATCGATACTATTCATCCCAA
1 TATCGATACTATTCATCCCAA
* *
1204402 TATTGATACTGTTCATCCCAA
1 TATCGATACTATTCATCCCAA
1204423 TATCGATACT
1 TATCGATACT
1204433 CGAACACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.37
Consensus pattern (21 bp):
TATCGATACTATTCATCCCAA
Found at i:1211654 original size:3 final size:3
Alignment explanation
Indices: 1211646--1211695 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
1211636 TTAATTGTTC
1211646 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1211694 AT
1 AT
1211696 AGTAATAATA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:1214310 original size:21 final size:21
Alignment explanation
Indices: 1214286--1214352 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
1214276 GTCAAGTTGT
1214286 AAGTTTATGATCCATCTATTG
1 AAGTTTATGATCCATCTATTG
* *
1214307 AAGTTTAAG-T-C-TATAGTT-
1 AAGTTTATGATCCATCTA-TTG
*
1214325 -AGCTTATGATCCATCTATTG
1 AAGTTTATGATCCATCTATTG
1214345 AAGTTTAT
1 AAGTTTAT
1214353 TTCTTTGTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 12
0.65 0.12 0.23
Matches are distributed among these distances:
17 6 0.18
18 4 0.12
19 6 0.18
20 4 0.12
21 14 0.41
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.43
Consensus pattern (21 bp):
AAGTTTATGATCCATCTATTG
Found at i:1216226 original size:22 final size:19
Alignment explanation
Indices: 1216180--1216238 Score: 64
Period size: 22 Copynumber: 2.9 Consensus size: 19
1216170 TTCAAAAAAG
*
1216180 GTATCGATACCATAATAGA
1 GTATCAATACCATAATAGA
*
1216199 GTATCAGTACCATAATATAGTA
1 GTATCAATACCAT-A-ATAG-A
*
1216221 GTATCAATACCATGATAG
1 GTATCAATACCATAATAG
1216239 GGGTATCGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
19 11 0.33
20 5 0.15
21 4 0.12
22 13 0.39
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (19 bp):
GTATCAATACCATAATAGA
Found at i:1216962 original size:45 final size:45
Alignment explanation
Indices: 1216662--1216937 Score: 351
Period size: 45 Copynumber: 6.1 Consensus size: 45
1216652 TGAAAAAAAT
1216662 AATGCATATGGGTGCATTATC-GACATGAAAGGATGCCATAATTGA
1 AATGCATATGGGTGCATTATCAG-CATGAAAGGATGCCATAATTGA
1216707 AATGCATATGGGTGCATTATCAGCATGAAAGGAAT-CCATAATTGA
1 AATGCATATGGGTGCATTATCAGCATGAAAGG-ATGCCATAATTGA
* * * * **
1216752 AATGCATATGGGTGTAGTATTAGCATGAAAGAATTTCATAATTGA
1 AATGCATATGGGTGCATTATCAGCATGAAAGGATGCCATAATTGA
**
1216797 AATGCATATGAATGCATTATCAGCATGAAAGGATGCCATAATTGA
1 AATGCATATGGGTGCATTATCAGCATGAAAGGATGCCATAATTGA
* * *
1216842 AATGCATATATGGGTGTATTATCGGCATGAAAGGATGCCATAATTAA
1 AATGC--ATATGGGTGCATTATCAGCATGAAAGGATGCCATAATTGA
*** *
1216889 AATATGTATGGGTGCATTATC-GACATGAAAGGATGTCATAATTGA
1 AATGCATATGGGTGCATTATCAG-CATGAAAGGATGCCATAATTGA
1216934 AATG
1 AATG
1216938 TGTAATGGTT
Statistics
Matches: 200, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
44 3 0.01
45 156 0.78
46 3 0.01
47 38 0.19
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (45 bp):
AATGCATATGGGTGCATTATCAGCATGAAAGGATGCCATAATTGA
Found at i:1216980 original size:137 final size:135
Alignment explanation
Indices: 1216662--1216937 Score: 351
Period size: 137 Copynumber: 2.0 Consensus size: 135
1216652 TGAAAAAAAT
** *
1216662 AATGCATATGGGTGCATTAT-CGACATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTA
1 AATGCATATGAATGCATTATAAG-CATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTA
* * * * *
1216726 TCAGCATGAAAGGAATCCATAATTGAAATGCATATGGGTGTAGTATTAGCATGAAAGAATTTCAT
65 TCAGCATGAAAGGAATCCATAATTAAAATACATATGGGTGCAGTATGAGCATGAAAGAATGTCAT
1216791 AATTGA
130 AATTGA
* *
1216797 AATGCATATGAATGCATTATCAGCATGAAAGGATGCCATAATTGAAATGCATATATGGGTGTATT
1 AATGCATATGAATGCATTATAAGCATGAAAGGATGCCATAATTGAAATGC--ATATGGGTGCATT
* ** * *
1216862 ATCGGCATGAAAGG-ATGCCATAATTAAAATATGTATGGGTGCATTATCGA-CATGAAAGGATGT
64 ATCAGCATGAAAGGAAT-CCATAATTAAAATACATATGGGTGCAGTAT-GAGCATGAAAGAATGT
1216925 CATAATTGA
127 CATAATTGA
1216934 AATG
1 AATG
1216938 TGTAATGGTT
Statistics
Matches: 122, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
135 45 0.37
136 3 0.02
137 73 0.60
138 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (135 bp):
AATGCATATGAATGCATTATAAGCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTAT
CAGCATGAAAGGAATCCATAATTAAAATACATATGGGTGCAGTATGAGCATGAAAGAATGTCATA
ATTGA
Found at i:1223048 original size:20 final size:20
Alignment explanation
Indices: 1223019--1223056 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1223009 TGATTGTATC
* *
1223019 AGTATCGATACCGAAGGGGA
1 AGTATAGATACCAAAGGGGA
1223039 AGTATAGATACCAAAGGG
1 AGTATAGATACCAAAGGG
1223057 AATGTATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.32, T:0.16
Consensus pattern (20 bp):
AGTATAGATACCAAAGGGGA
Found at i:1223063 original size:20 final size:20
Alignment explanation
Indices: 1223019--1223063 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
1223009 TGATTGTATC
* *
1223019 AGTATCGATACCGAAGGGGA
1 AGTATAGATACCGAAAGGGA
1223039 AGTATAGATACC-AAAGGGA
1 AGTATAGATACCGAAAGGGA
1223058 ATGTAT
1 A-GTAT
1223064 CAATACCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.40, C:0.11, G:0.29, T:0.20
Consensus pattern (20 bp):
AGTATAGATACCGAAAGGGA
Found at i:1223069 original size:20 final size:19
Alignment explanation
Indices: 1223019--1223071 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
1223009 TGATTGTATC
* *
1223019 AGTATCGATACCGAAGGGGA
1 AGTATCAATACC-AAAGGGA
1223039 AGTAT-AGATACCAAAGGGA
1 AGTATCA-ATACCAAAGGGA
1223058 ATGTATCAATACCA
1 A-GTATCAATACCA
1223072 TTCAAAACAG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 7 0.25
20 20 0.71
21 1 0.04
ACGTcount: A:0.42, C:0.15, G:0.25, T:0.19
Consensus pattern (19 bp):
AGTATCAATACCAAAGGGA
Found at i:1223640 original size:45 final size:45
Alignment explanation
Indices: 1223578--1223881 Score: 369
Period size: 45 Copynumber: 6.8 Consensus size: 45
1223568 AGAAAAAAAT
* *
1223578 AATGCATATGGGTGCATTATCGGCATGAAAAGATTTCATAATTAA
1 AATGCATATGGGTGCATTATCGGCATGAAAAGATGTCATAATTGA
* * * *
1223623 AATGCATATGGGTGCATTATCGACAAGAAAGGATGCCATAATTGA
1 AATGCATATGGGTGCATTATCGGCATGAAAAGATGTCATAATTGA
* * * *
1223668 AAAGAATATGGGTGCATTATTGGCATGAAAAGATTTCATAATTGA
1 AATGCATATGGGTGCATTATCGGCATGAAAAGATGTCATAATTGA
* ** *
1223713 AATGCATATGGATGCATTATCATCATGAAATGATGTCATAATTGA
1 AATGCATATGGGTGCATTATCGGCATGAAAAGATGTCATAATTGA
* * *
1223758 AATGCATATGGGTGCATTATCGGCATGAAATGATG-CCTAATTTA
1 AATGCATATGGGTGCATTATCGGCATGAAAAGATGTCATAATTGA
* * *
1223802 AATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATTATTGA
1 AATGCATATGGGTGCATTATCGGCATGAAAAGATGTCATAATTGA
* ** *
1223847 AATGCATAAT-TGTGCATTATAAGCATGAATAGATG
1 AATGCAT-ATGGGTGCATTATCGGCATGAAAAGATG
1223882 CTATTAACGA
Statistics
Matches: 221, Mismatches: 36, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
44 41 0.19
45 178 0.81
46 2 0.01
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (45 bp):
AATGCATATGGGTGCATTATCGGCATGAAAAGATGTCATAATTGA
Found at i:1226233 original size:10 final size:9
Alignment explanation
Indices: 1226202--1226268 Score: 55
Period size: 9 Copynumber: 7.1 Consensus size: 9
1226192 CAAAAAGAAG
1226202 AAGAAAAAA
1 AAGAAAAAA
1226211 TAA-AAATAAA
1 -AAGAAA-AAA
1226221 AAGTAAAAAA
1 AAG-AAAAAA
* *
1226231 AAGGAGAAA
1 AAGAAAAAA
*
1226240 AAGAATAAA
1 AAGAAAAAA
*
1226249 AGGAAAAAA
1 AAGAAAAAA
1226258 AAGGAAAAAA
1 AA-GAAAAAA
1226268 A
1 A
1226269 TAAGAAGAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
9 24 0.52
10 19 0.41
11 3 0.07
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (9 bp):
AAGAAAAAA
Found at i:1228439 original size:3 final size:3
Alignment explanation
Indices: 1228431--1228523 Score: 131
Period size: 3 Copynumber: 32.0 Consensus size: 3
1228421 ATATTTATAT
*
1228431 TTA TTA TTA TTA TTAA ATA TTA TTA TTA TTA TT- TTA TT- TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
1228475 TT- TTA TTA TTA TTA TTA TTA TTA ATA TTA TTA TTA TT- TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1228521 TTA
1 TTA
1228524 AATAATAAAT
Statistics
Matches: 81, Mismatches: 4, Indels: 10
0.85 0.04 0.11
Matches are distributed among these distances:
2 8 0.10
3 71 0.88
4 2 0.02
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:1229887 original size:4 final size:4
Alignment explanation
Indices: 1229878--1229917 Score: 57
Period size: 4 Copynumber: 10.2 Consensus size: 4
1229868 AATATAATAT
1229878 TTTA TTTA TTTA TTT- TTTA TTTAA TTT- TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTT-A TTTA TTTA TTTA TTTA T
1229918 GTTTTATTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 6 0.18
4 23 0.70
5 4 0.12
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:1229897 original size:15 final size:15
Alignment explanation
Indices: 1229877--1229925 Score: 68
Period size: 15 Copynumber: 3.5 Consensus size: 15
1229867 AAATATAATA
1229877 TTTTATTTATTTATT
1 TTTTATTTATTTATT
1229892 TTTTATTTA---ATT
1 TTTTATTTATTTATT
*
1229904 TTTTATTTATTTATG
1 TTTTATTTATTTATT
1229919 TTTTATT
1 TTTTATT
1229926 CACTAATATT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 12 0.40
15 18 0.60
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (15 bp):
TTTTATTTATTTATT
Found at i:1229910 original size:27 final size:27
Alignment explanation
Indices: 1229872--1229925 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
1229862 ACTTTAAATA
*
1229872 TAATATTTTATTTATTTATTTTTTATT
1 TAATATTTTATTTATTTATGTTTTATT
*
1229899 TAATTTTTTATTTATTTATGTTTTATT
1 TAATATTTTATTTATTTATGTTTTATT
1229926 CACTAATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (27 bp):
TAATATTTTATTTATTTATGTTTTATT
Found at i:1229925 original size:11 final size:11
Alignment explanation
Indices: 1229882--1229915 Score: 59
Period size: 11 Copynumber: 3.0 Consensus size: 11
1229872 TAATATTTTA
1229882 TTTATTTATTT
1 TTTATTTATTT
1229893 TTTATTTAATTT
1 TTTATTT-ATTT
1229905 TTTATTTATTT
1 TTTATTTATTT
1229916 ATGTTTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTATTTATTT
Found at i:1231440 original size:19 final size:19
Alignment explanation
Indices: 1231427--1231464 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
1231417 TTTTATTTTT
1231427 CTCTAATTTGTTTATATTG
1 CTCTAATTTGTTTATATTG
1231446 CTCTAATTTGTTTATATTG
1 CTCTAATTTGTTTATATTG
1231465 ATTTCTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.11, G:0.11, T:0.58
Consensus pattern (19 bp):
CTCTAATTTGTTTATATTG
Found at i:1232372 original size:43 final size:43
Alignment explanation
Indices: 1232311--1232435 Score: 198
Period size: 43 Copynumber: 2.9 Consensus size: 43
1232301 TGTAGAGAAA
1232311 TTAGGAGTGAAAGTTATCCCCTATATGTAAAGTTTTGTTTAAG
1 TTAGGAGTGAAAGTTATCCCCTATATGTAAAGTTTTGTTTAAG
*
1232354 TTAGGAGTGAAAGTTATCCCCTATATGTAAAGTTTTGTTGAAG
1 TTAGGAGTGAAAGTTATCCCCTATATGTAAAGTTTTGTTTAAG
* * * *
1232397 TTAGAAGTGAAAGCTA-CCCTTATATATAAAGTTTTGTTT
1 TTAGGAGTGAAAGTTATCCCCTATATGTAAAGTTTTGTTT
1232436 GATGTACCGA
Statistics
Matches: 76, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
42 20 0.26
43 56 0.74
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (43 bp):
TTAGGAGTGAAAGTTATCCCCTATATGTAAAGTTTTGTTTAAG
Found at i:1237629 original size:54 final size:54
Alignment explanation
Indices: 1237527--1237629 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 54
1237517 AGAAATCTGG
* * * * *
1237527 GTAGAAGCCATAGGAAATGATGAATGTATTGTCAAATATTTTATGAACATCCGT
1 GTAGAAACCACAGGAAATGATGAATATATTGTCAAATATATTACGAACATCCGT
* *
1237581 GTAGAAACCACAGGAAA-GAATGAATATGTTGTCAAATGTATTACGAACA
1 GTAGAAACCACAGGAAATG-ATGAATATATTGTCAAATATATTACGAACA
1237630 AGTTATTATG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.02
54 40 0.98
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (54 bp):
GTAGAAACCACAGGAAATGATGAATATATTGTCAAATATATTACGAACATCCGT
Found at i:1238662 original size:123 final size:122
Alignment explanation
Indices: 1238414--1238859 Score: 680
Period size: 123 Copynumber: 3.6 Consensus size: 122
1238404 AACTCGATGT
* *
1238414 ATCAACATTTCCA-GAAAGAGTT-ATAATGAGAAGAACTCATCTGAAGATGAAGAAGAAGTTCAT
1 ATCAACATTTCCAGGTAA-AGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCAT
* * *
1238477 AATGAGAAGAACTTGTTCAACCTTTTGCTTGATTCTATCATAGAAGGAGATAGATCAGC
65 AATGAGAAGAACTTGTTCAACCTTTTGCTCGATTCTATCACAGAA-GAGATAGATCAAC
1238536 ATCAACATTTCCAGGTAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
1 ATCAACATTTCCAGGTAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
* *
1238601 ATGAGAAGAACTTGTTCAACCTTTTGCCCGATTCTATCACAGAAGTAGATATATCAAC
66 ATGAGAAGAACTTGTTCAACCTTTTGCTCGATTCTATCACAGAAG-AGATAGATCAAC
* * *
1238659 ATCAATATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATA
1 ATCAACATTTCCAGGTAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
* * *
1238724 ATGAGAAGAACTTATTCAACCTTTTGCTCGACTCTATCACAGAAAGAGATAGATCAAT
66 ATGAGAAGAACTTGTTCAACCTTTTGCTCGATTCTATCACAG-AAGAGATAGATCAAC
* * * * *
1238782 ATCAACATTGCCAGGTAGAGTTCATAATGAGGAGAACTCGTCTGACGAGGAAGAAGAAGTTCATA
1 ATCAACATTTCCAGGTAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
1238847 ATGAGAAGAACTT
66 ATGAGAAGAACTT
1238860 TTTTGAACTT
Statistics
Matches: 299, Mismatches: 21, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
122 18 0.06
123 278 0.93
124 3 0.01
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (122 bp):
ATCAACATTTCCAGGTAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
ATGAGAAGAACTTGTTCAACCTTTTGCTCGATTCTATCACAGAAGAGATAGATCAAC
Found at i:1239121 original size:137 final size:138
Alignment explanation
Indices: 1238799--1239142 Score: 396
Period size: 139 Copynumber: 2.5 Consensus size: 138
1238789 TTGCCAGGTA
* * * *
1238799 GAGTTCATAATGAGGAGAACTCGTCTGACGAGGAAGAAGAAGTTCATAATGAGAAGAACTTTTTT
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAAC-TTGTT
* * *
1238864 GAA-CTTAGCTTGATTCATCATCTATGGAGTTGAATAAAAGAAGAACCTCACTTGAGAATCAATA
65 CAACCTTAGCTTGATTCATCATCTATGAAGTTGAATAAAAGAAGAACCACACTTGAGAATCAATA
**
1238928 TTTTCAAAG
130 TTCCCAAAG
*
1238937 GAAGTTCATAATGAGAAGAACTCATCTGAAAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
1 G-AGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
* * * ** *
1239002 CAACCTT-GCCTT-ATTTCATCA-CATATGAAGTTGAATCAATG-A-CACCACTTTTGAGGATC-
65 CAACCTTAG-CTTGA-TTCATCATC-TATGAAGTTGAATAAAAGAAGAACCACACTTGAGAATCA
1239061 ATCATTCCCAGAAG
127 AT-ATTCCCA-AAG
* * * *
1239075 GAGTTCATAATGAGAAGAACTCATCTGAAGATGAAGAAGAATTTCATAATGAAAATAACTTGTTC
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
1239140 AAC
66 AAC
1239143 ATTTTGCTAG
Statistics
Matches: 178, Mismatches: 21, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
136 2 0.01
137 79 0.44
138 15 0.08
139 82 0.46
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (138 bp):
GAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
AACCTTAGCTTGATTCATCATCTATGAAGTTGAATAAAAGAAGAACCACACTTGAGAATCAATAT
TCCCAAAG
Found at i:1239390 original size:3 final size:3
Alignment explanation
Indices: 1239382--1239445 Score: 78
Period size: 3 Copynumber: 21.7 Consensus size: 3
1239372 TTTTTATTTA
* * *
1239382 TAT TAT TAT TA- TAT TTT TAT TAT TAT TAT TAT TAT TATT TAA AAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT
1239427 TAT T-T TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TA
1239446 AAAAAATAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
2 4 0.08
3 45 0.87
4 3 0.06
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Done.