genome.fa.s8561.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008561.1 Hibiscus syriacus cultivar Beakdansim tig00111470_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161482

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2287--2575	33	8.5	32	75	20	123	45	18	21	14	1.85
2314--2553	19	13.7	19	82	15	313	45	17	22	14	1.84
2314--2575	52	5.0	52	90	8	417	45	17	22	14	1.85
2582--2666	19	4.6	19	84	10	122	14	24	17	43	1.86
2771--2807	14	2.6	14	91	0	65	45	21	0	32	1.52
4657--4720	18	3.4	19	85	8	78	43	28	17	10	1.82
4693--4782	31	2.8	32	90	6	148	45	22	21	11	1.82
4783--4911	19	7.3	19	75	17	125	8	17	28	45	1.77
4783--4874	33	2.8	33	93	3	150	7	18	28	45	1.76
4954--5331	92	4.1	93	96	2	694	46	18	12	22	1.83
4954--5331	185	2.0	184	95	3	690	46	18	12	22	1.83
7020--7116	19	5.7	18	74	20	93	42	22	24	10	1.85
7007--7094	14	5.7	14	75	22	79	40	23	26	9	1.84
6999--7111	32	3.5	33	91	3	194	44	21	24	9	1.82
7112--7181	32	2.2	33	92	2	115	8	22	25	42	1.82
7123--7203	33	2.5	33	87	4	110	9	25	22	41	1.84
7136--7222	20	4.7	20	71	20	71	11	25	19	43	1.84
7300--7369	33	2.2	32	87	7	97	45	20	22	11	1.82
7739--7929	20	9.6	20	82	5	217	19	19	25	35	1.96
12590--12623	17	1.9	18	88	5	52	14	2	8	73	1.19
15528--15607	20	4.0	20	83	0	97	26	20	21	32	1.97
19925--19969	13	3.5	13	81	0	54	68	13	2	15	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22168--22219	21	2.7	19	77	19	54	65	3	0	30	1.10
22154--22222	30	2.2	30	84	5	84	65	2	0	31	1.08
22995--23087	21	4.6	20	77	4	96	40	18	22	18	1.91
22992--23087	41	2.3	41	92	0	165	41	17	21	18	1.90
23014--23148	41	3.3	41	81	6	123	40	20	19	20	1.92
23076--23169	20	4.7	20	81	2	89	35	24	17	23	1.95
23690--23756	19	3.5	19	83	2	80	49	23	16	10	1.77
23752--23897	19	8.1	19	69	17	96	13	24	19	42	1.87
23785--23872	33	2.6	33	92	1	140	13	27	20	38	1.90
23851--23897	20	2.3	20	75	13	51	14	25	12	46	1.80
25894--26016	42	2.9	42	80	2	122	22	36	17	22	1.95
25950--26016	21	3.2	21	66	6	55	23	35	20	19	1.95
27372--27406	14	2.6	14	90	4	54	28	0	25	45	1.54
27359--27407	14	3.7	14	76	10	50	26	0	22	51	1.49
27585--27702	19	6.7	19	66	19	76	13	23	20	42	1.88
27589--27682	33	2.8	33	98	0	179	12	24	19	43	1.85
29973--29997	12	2.1	12	100	0	50	0	28	0	72	0.86
31474--31510	14	2.6	14	86	0	56	48	21	0	29	1.50
31877--32073	20	9.9	20	99	0	385	36	19	24	19	1.95
32205--32241	14	2.6	14	86	0	56	48	21	0	29	1.50
32608--32664	20	2.8	20	94	0	96	38	17	22	21	1.93
32683--32769	19	4.8	19	90	9	139	13	21	17	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32683--32798	33	3.4	33	84	11	151	13	22	19	43	1.86
32886--32922	14	2.6	14	86	0	56	48	21	0	29	1.50
34786--34923	18	7.9	18	75	18	130	43	23	21	11	1.85
34769--34934	32	4.6	36	76	13	141	43	25	19	12	1.85
34843--34900	14	3.9	14	79	16	71	48	25	17	8	1.75
34827--34918	32	2.8	32	96	1	166	45	23	19	10	1.82
34930--35025	19	5.6	17	72	21	78	11	19	22	45	1.82
34952--35009	14	3.9	14	79	16	71	8	17	25	48	1.75
34935--35025	32	2.8	33	94	3	166	10	18	23	47	1.80
35010--35064	20	2.8	19	83	8	65	16	23	23	36	1.94
35537--35581	18	2.5	18	85	0	63	15	15	42	26	1.87
36900--36937	20	1.9	20	88	0	58	50	21	15	13	1.78
37200--37243	22	2.0	22	95	0	79	18	15	45	20	1.85
37428--37521	20	4.7	20	80	2	89	23	18	24	34	1.96
37448--37583	41	3.3	42	78	5	118	20	20	20	38	1.94
37408--37522	20	5.7	20	78	5	88	23	17	23	35	1.95
37511--37603	21	4.6	20	79	4	105	18	23	18	39	1.92
37511--37606	41	2.3	41	96	0	174	18	22	17	40	1.91
45105--45151	22	2.1	23	88	4	69	57	2	4	36	1.30
47109--47139	12	2.6	12	100	0	62	38	6	6	48	1.55
52730--52756	9	3.0	9	100	0	54	11	22	33	33	1.89
71168--71206	19	2.1	19	85	9	53	33	0	2	64	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71832--71861	2	15.0	2	100	0	60	50	0	0	50	1.00
72785--72836	20	2.6	20	87	0	68	28	17	5	48	1.70
75021--75115	44	2.2	44	96	3	176	44	11	16	27	1.83
78615--78667	2	26.5	2	100	0	106	49	0	0	50	1.00
84151--84191	3	13.7	3	85	10	57	63	2	0	34	1.08
84427--84815	48	8.4	48	79	9	416	32	18	22	26	1.97
84470--84813	89	3.8	89	89	5	528	31	18	22	27	1.97
84453--84815	185	2.0	183	91	2	593	31	18	22	27	1.97
85951--86013	27	2.4	27	82	15	78	6	14	1	77	1.03
98905--98945	3	13.7	3	85	10	57	63	2	0	34	1.08
102572--102605	17	1.9	18	88	5	52	67	2	0	29	1.05
104483--104564	14	6.4	14	72	21	81	14	10	14	59	1.61
104492--104590	24	4.1	24	83	3	119	15	11	15	58	1.63
104505--104553	10	4.5	10	76	18	53	16	12	12	59	1.62
104492--104590	48	2.1	48	86	3	137	15	11	15	58	1.63
104483--104564	38	2.2	38	84	4	103	14	10	14	59	1.61
105236--105268	17	2.0	17	88	5	50	30	6	6	57	1.47
109255--109292	16	2.2	18	86	9	53	23	2	2	71	1.12
114648--114673	2	13.0	2	100	0	52	50	0	0	50	1.00
123328--123353	2	13.0	2	100	0	52	50	0	0	50	1.00
123663--123719	23	2.4	24	82	5	71	63	3	1	31	1.22
129541--129578	18	2.1	18	85	9	51	21	5	0	73	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130278--130311	17	1.9	18	88	5	52	38	5	17	38	1.74
134545--134685	75	1.9	75	89	2	221	27	21	30	20	1.98
140348--140426	37	2.1	37	100	0	158	56	10	25	7	1.58
149108--149152	11	4.1	11	82	5	56	71	4	11	13	1.29
149108--149149	22	1.9	22	90	9	68	69	4	11	14	1.34
153461--153487	11	2.5	11	100	0	54	0	7	18	74	1.05
153823--153867	11	4.1	11	82	5	56	71	4	11	13	1.29
153823--153864	22	1.9	22	90	9	68	69	4	11	14	1.34
156833--156866	16	2.1	16	88	0	50	50	0	2	47	1.16
156908--156941	16	2.0	18	88	11	54	26	2	5	64	1.30
157410--157656	130	1.9	129	93	0	422	35	12	15	36	1.85
158050--158125	35	2.2	35	92	0	125	35	1	23	39	1.63
160153--160234	39	2.1	39	97	0	155	39	6	21	32	1.78

Tables:   1

The End!