genome.fa.s8562.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008562.1 Hibiscus syriacus cultivar Beakdansim tig00111471_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  208436

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17414--17482	35	2.0	35	94	0	120	15	10	20	53	1.71
18186--18252	21	3.2	21	93	0	107	41	25	22	10	1.85
20763--20808	18	2.6	18	86	10	60	19	4	2	73	1.10
23467--23566	13	7.7	13	82	0	128	25	20	20	35	1.96
23476--23566	26	3.5	26	93	0	155	26	19	18	35	1.95
23799--23830	2	16.0	2	100	0	64	50	0	0	50	1.00
23727--23914	85	2.2	85	96	0	340	47	9	4	38	1.57
23884--23922	2	19.5	2	89	10	62	48	2	0	48	1.15
29608--29673	32	2.1	32	83	8	82	81	6	10	1	0.92
29608--29673	16	4.2	15	79	11	60	81	6	10	1	0.92
29608--29673	20	3.3	19	78	18	62	81	6	10	1	0.92
30279--30333	22	2.5	22	96	0	101	36	25	12	25	1.91
30673--30745	24	3.0	24	64	15	60	36	12	5	45	1.65
31336--32820	106	14.1	106	90	2	2121	34	24	17	23	1.96
34519--34593	4	16.8	4	73	20	51	25	5	1	68	1.19
34640--34671	9	3.6	9	91	0	55	21	3	0	75	0.95
36462--36497	2	17.5	2	94	5	63	47	0	2	50	1.15
39366--39403	15	2.7	14	92	8	60	36	5	13	44	1.66
41469--41507	20	2.0	20	84	0	51	23	7	23	46	1.78
41663--41702	21	1.9	21	89	0	62	10	25	40	25	1.86
41685--41745	20	2.9	21	87	9	88	21	24	32	21	1.98
51685--51842	82	1.9	82	82	5	194	28	18	16	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52107--52153	24	1.9	24	86	4	67	14	12	0	72	1.13
52155--53607	236	6.2	236	83	4	1710	35	17	15	32	1.91
53182--53261	42	1.9	42	84	0	106	33	21	21	23	1.97
58805--58848	21	2.0	21	78	4	52	43	11	0	45	1.40
66279--66322	22	2.0	22	86	4	63	13	20	40	25	1.89
68933--68980	23	2.2	21	88	7	69	20	22	35	20	1.96
68933--68992	21	2.7	22	87	5	77	20	25	30	25	1.99
82978--83150	90	1.9	89	92	1	292	37	10	6	45	1.65
89793--89965	90	1.9	89	91	3	285	38	10	6	43	1.67
92773--92803	13	2.4	13	94	0	53	77	3	9	9	1.10
98703--98843	61	2.3	61	86	0	183	36	17	14	31	1.90
100375--100413	20	2.0	20	94	0	69	43	23	0	33	1.54
101056--101120	21	2.9	22	80	13	62	18	43	26	12	1.85
101465--101534	34	2.1	32	89	5	104	31	15	31	21	1.95
102217--102248	15	2.1	15	100	0	64	12	12	37	37	1.81
103873--103951	20	3.9	20	88	3	122	17	39	29	13	1.89
103873--103951	41	2.0	40	94	2	140	17	39	29	13	1.89
105231--105295	20	2.8	25	69	26	70	43	18	9	29	1.81
105967--106012	23	2.0	22	87	4	65	36	26	10	26	1.89
108086--108132	21	2.2	21	100	0	94	38	21	10	29	1.87
108086--108141	21	2.7	21	88	0	58	37	21	8	32	1.84
117496--117543	20	2.4	20	92	0	87	22	33	8	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117737--117870	60	2.2	60	81	5	146	40	5	22	31	1.78
118580--118725	48	3.0	48	84	0	184	45	27	9	17	1.79
118974--119083	55	2.0	55	100	0	220	41	10	5	41	1.63
122155--122417	95	2.7	95	87	4	341	33	14	17	34	1.90
124928--124964	16	2.2	17	90	4	58	75	2	2	18	1.04
126905--126997	37	2.6	34	80	16	91	70	1	6	21	1.15
127032--127070	2	20.0	2	94	5	71	51	0	0	48	1.00
126880--127270	201	1.9	197	82	13	476	61	3	5	28	1.36
127234--127278	23	2.0	23	87	8	67	53	0	4	42	1.21
129836--129961	49	2.6	49	100	0	252	38	11	16	33	1.84
130168--130377	70	3.0	70	87	1	305	30	21	16	31	1.95
142054--142683	311	2.0	313	93	5	1096	37	16	10	35	1.83
147925--147963	14	2.7	14	80	4	51	30	2	0	66	1.05
152187--152224	16	2.5	15	95	4	67	23	36	7	31	1.84
153140--153781	80	8.1	81	84	7	802	30	22	12	34	1.91
153140--153781	158	4.1	160	84	7	807	30	22	12	34	1.91
155042--155300	129	2.0	129	95	0	464	40	16	6	35	1.75
159372--159411	21	1.9	21	85	10	55	57	0	0	42	0.98
160280--160316	15	2.5	15	86	0	56	0	21	0	78	0.75
160280--160318	17	2.1	19	86	13	55	0	20	0	79	0.73
160793--160869	3	25.3	3	89	2	91	58	0	0	41	0.98
161099--162107	113	9.0	113	93	1	1492	29	19	14	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162835--163307	83	5.7	83	94	1	797	35	21	13	29	1.92
164431--164474	4	12.2	4	86	13	53	0	15	0	84	0.63
164421--164474	14	3.9	14	88	9	67	0	16	0	83	0.65
164424--164494	25	2.8	24	83	14	81	2	12	0	84	0.73
164425--164472	18	2.8	17	90	6	78	0	14	0	85	0.60
164423--164483	13	4.5	13	84	11	70	0	14	0	85	0.60
174589--174613	9	2.8	9	100	0	50	52	0	0	48	1.00
176667--176714	15	3.4	15	80	13	57	0	18	2	79	0.84
177178--177247	3	23.3	3	86	5	52	54	0	0	45	0.99
177170--177254	12	7.0	12	76	9	75	55	0	0	44	0.99
177178--177243	18	3.5	18	80	13	71	53	0	0	46	1.00
177190--177240	15	3.7	15	77	17	65	50	0	0	49	1.00
177832--177862	13	2.4	13	100	0	62	38	54	6	0	1.26
178651--178772	59	2.1	59	82	3	147	32	22	13	30	1.93
184288--184327	14	2.8	15	85	11	57	17	10	0	72	1.11
184293--184342	19	2.6	19	87	0	73	14	12	2	72	1.22
189463--189509	5	9.4	5	82	13	53	17	19	0	63	1.30
190604--190779	69	2.5	69	85	6	232	35	22	11	30	1.90
193482--193546	29	2.2	31	83	5	80	30	7	10	50	1.65
195802--195840	20	1.9	20	84	5	51	38	12	23	25	1.90
200423--200599	70	2.5	70	87	3	241	31	24	14	28	1.95
206708--206760	24	2.2	24	93	0	88	22	22	28	26	1.99

Tables:   1

The End!