Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: VEPZ01008565.1 Hibiscus syriacus cultivar Beakdansim tig00111475_pilon, whole genome shotgun sequence Parameters: 2 7 7 80 10 50 1000 Length: 92766

Tables:   1   

This is table  1  of  1  ( 64 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1979--2022
19
2.4
18
82
10
54
31
2
6
59
1.36
12751--12896
17
8.4
17
73
7
105
34
12
9
43
1.75
12751--12923
35
4.9
35
77
9
142
36
11
9
42
1.73
15751--15795
22
2.0
22
100
0
90
40
8
17
33
1.81
16844--16891
19
2.6
19
80
3
62
75
10
2
12
1.14
21370--21408
15
2.5
15
83
4
51
28
0
0
71
0.86
29025--29096
30
2.4
30
90
0
108
31
23
20
23
1.98
29083--29207
31
4.0
31
77
9
128
31
19
18
31
1.96
33753--33824
30
2.4
30
92
0
117
30
25
20
23
1.99
33811--33935
31
4.0
31
77
9
128
31
19
18
31
1.96
35157--35207
19
2.7
19
100
0
102
23
25
21
29
1.99
40308--40345
15
2.5
16
83
12
53
23
5
7
63
1.42
42211--42276
29
2.4
28
92
5
107
37
0
12
50
1.40
47396--47558
87
1.9
87
94
0
290
42
9
14
33
1.78
50907--51377
183
2.6
183
95
0
825
34
16
14
34
1.89
51255--51497
120
2.0
120
92
0
405
38
14
13
33
1.85
51072--51680
303
2.0
303
93
0
1047
35
15
14
34
1.88
51375--52146
183
4.2
183
96
0
1368
33
16
14
35
1.89
50907--51867
486
2.0
486
95
0
1717
33
15
14
35
1.89
53361--53406
18
2.6
18
85
0
56
21
32
6
39
1.79
53361--53406
12
3.8
12
85
0
56
21
32
6
39
1.79
54878--55649
200
3.8
200
94
1
1303
30
18
14
36
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55883--55931
19
2.6
19
93
6
82
55
8
2
34
1.41
57722--57787
33
2.0
33
90
0
105
22
48
0
28
1.51
57821--57885
21
3.1
21
93
0
103
16
30
10
41
1.83
60275--60321
20
2.4
19
82
10
67
19
17
10
53
1.72
60116--60533
182
2.3
182
89
0
613
26
16
14
42
1.87
61577--61627
20
2.5
20
100
0
102
39
3
13
43
1.63
61698--61762
28
2.4
27
84
5
69
36
6
7
49
1.57
62168--62192
6
4.2
6
100
0
50
52
48
0
0
1.00
71047--71126
34
2.4
33
79
8
81
25
2
10
62
1.39
74495--74528
12
2.8
12
90
4
50
64
5
2
26
1.30
75155--75246
28
3.1
28
69
11
85
36
6
14
42
1.71
76725--76785
22
2.8
22
82
5
70
27
26
16
29
1.97
78831--78935
44
2.4
43
81
6
122
39
35
5
20
1.76
79435--79527
21
4.6
20
78
4
96
38
18
24
18
1.92
79432--79527
41
2.3
41
98
0
183
39
17
23
18
1.92
79435--79527
20
4.6
20
78
4
96
38
18
24
18
1.92
79516--79609
20
4.7
20
77
2
80
35
24
17
23
1.95
79513--79590
41
1.9
41
83
0
102
41
21
15
21
1.90
80151--80335
19
10.1
19
77
14
174
12
22
22
43
1.86
80151--80240
39
2.3
38
94
1
153
12
20
22
45
1.83
80223--80310
33
2.6
33
92
1
140
11
25
25
38
1.89
80278--80335
20
2.9
20
80
10
64
13
24
18
43
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82337--82459
42
2.9
42
80
2
122
22
36
17
22
1.95
82393--82459
21
3.2
21
66
6
55
23
35
20
19
1.95
83817--83852
14
2.6
14
95
0
63
30
0
25
44
1.54
84031--84148
19
6.7
19
66
19
76
13
23
20
42
1.88
84035--84128
33
2.8
33
98
0
179
12
24
19
43
1.85
87918--87954
14
2.6
14
86
0
56
48
21
0
29
1.50
89809--89875
19
3.5
19
83
4
89
37
23
23
14
1.93
89864--89926
14
4.3
14
75
16
65
50
23
15
9
1.73
89848--89922
32
2.3
33
93
2
125
45
24
18
12
1.83
89933--90027
18
5.7
18
68
24
73
11
20
23
45
1.83
89954--90011
14
3.9
14
79
16
71
8
17
25
48
1.75
89938--90027
32
2.8
33
93
5
157
11
18
23
46
1.81
90014--90067
21
2.7
20
85
5
72
14
22
24
38
1.91
90540--90584
18
2.5
18
85
0
63
15
15
42
26
1.87
92186--92229
22
2.0
22
95
0
79
18
15
45
20
1.85
92413--92506
20
4.7
20
80
2
89
23
18
24
34
1.96
92433--92510
41
1.9
41
86
0
111
21
16
21
39
1.92
92393--92507
20
5.7
20
78
5
88
23
17
23
35
1.95
92496--92587
20
4.6
20
79
2
103
18
23
18
39
1.92
92496--92591
41
2.4
41
96
1
176
18
22
17
40
1.91

Tables:   1   

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