Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008566.1 Hibiscus syriacus cultivar Beakdansim tig00111481_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 191434
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
File 1 of 2
Found at i:8348 original size:111 final size:105
Alignment explanation
Indices: 8198--8506 Score: 323
Period size: 111 Copynumber: 2.9 Consensus size: 105
8188 TGACGAGCCT
*
8198 GCTCCCTATTCCTTCAG-GAAGTATA-AGACTCGAACAATCTTCATAAAATGTGTCTGCTCTCTA
1 GCTCCCTATTCCTTCAGAG-AGTATAGA-ACTCGAA-AATCTTCATAAAA-GTGTCTGCTCCCTA
*
8261 TTCATTCAGAGAGTATAAGAATTGAACAATCTTCAATAAAACGGGTAC
62 TTCATTCAGAGAGTATAAGAACT---CAATCTTCAAT-AAACGGGTAC
* *
8309 GCTCTCTATTCCTTCAGAGAGTATAGAACTCGGAAAATCTTCAATAAAGAG-GTCCGCTCCCTAT
1 GCTCCCTATTCCTTCAGAGAGTATAGAACTC-GAAAATCTTC-ATAAA-AGTGTCTGCTCCCTAT
* * * * *
8373 TCTTTCAGAGAGTAT-AGGACTCAATCTTTAATAAACGTGTCC
63 TCATTCAGAGAGTATAAGAACTCAATCTTCAATAAACGGGTAC
* * *
8415 ACTCCCTATTCCTTCAGAGAGTATAGGACTCG---ATCTTCATAAAA-TGTCTGCTCCCTATTCC
1 GCTCCCTATTCCTTCAGAGAGTATAGAACTCGAAAATCTTCATAAAAGTGTCTGCTCCCTATTCA
* *
8476 TTCAGAGAGTAT-AGGACTCGATCTTC-ATAAA
66 TTCAGAGAGTATAAGAACTCAATCTTCAATAAA
8507 TGAGTTTGCT
Statistics
Matches: 176, Mismatches: 16, Indels: 24
0.81 0.07 0.11
Matches are distributed among these distances:
99 5 0.03
100 39 0.22
101 5 0.03
102 6 0.03
105 1 0.01
106 36 0.20
107 10 0.06
110 4 0.02
111 58 0.33
112 11 0.06
113 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (105 bp):
GCTCCCTATTCCTTCAGAGAGTATAGAACTCGAAAATCTTCATAAAAGTGTCTGCTCCCTATTCA
TTCAGAGAGTATAAGAACTCAATCTTCAATAAACGGGTAC
Found at i:8420 original size:51 final size:50
Alignment explanation
Indices: 8198--8506 Score: 248
Period size: 55 Copynumber: 5.9 Consensus size: 50
8188 TGACGAGCCT
* * *
8198 GCTCCCTATTCCTTCAG-GAAGTATAAGACTCGAACAATCTTC-ATAAAATGTGTCT
1 GCTCCCTATTCCTTCAGAG-AGTATAGGACT----CAATCTTCAAT-AAA-GGGTCC
* * * * *
8253 GCTCTCTATTCATTCAGAGAGTATAAGAATTGAACAATCTTCAATAAAACGGGTAC
1 GCTCCCTATTCCTTCAGAGAGTAT-AGGACT---CAATCTTCAAT-AAA-GGGTCC
* *
8309 GCTCTCTATTCCTTCAGAGAGTATAGAACTCGGAAAATCTTCAATAAAGAGGTCC
1 GCTCCCTATTCCTTCAGAGAGTATAGGACTC----AATCTTCAATAAAG-GGTCC
* * *
8364 GCTCCCTATTCTTTCAGAGAGTATAGGACTCAATCTTTAATAAACGTGTCC
1 GCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAATAAA-GGGTCC
* * ** *
8415 ACTCCCTATTCCTTCAGAGAGTATAGGACTCGATCTTC-ATAAAATGTCT
1 GCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAATAAAGGGTCC
*
8464 GCTCCCTATTCCTTCAGAGAGTATAGGACTCGATCTTC-ATAAA
1 GCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAATAAA
8507 TGAGTTTGCT
Statistics
Matches: 221, Mismatches: 24, Indels: 24
0.82 0.09 0.09
Matches are distributed among these distances:
49 46 0.21
50 5 0.02
51 50 0.23
52 2 0.01
54 1 0.00
55 71 0.32
56 46 0.21
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (50 bp):
GCTCCCTATTCCTTCAGAGAGTATAGGACTCAATCTTCAATAAAGGGTCC
Found at i:8551 original size:37 final size:36
Alignment explanation
Indices: 8510--8581 Score: 126
Period size: 37 Copynumber: 2.0 Consensus size: 36
8500 TCATAAATGA
8510 GTTTGCTTCACTAATCTTCCGTGAAGGCTTACAGATG
1 GTTTGCTTCACTAATCTTCCGTGAAGGCTTA-AGATG
*
8547 GTTTGCTTCACTACTCTTCCGTGAAGGCTTAAGAT
1 GTTTGCTTCACTAATCTTCCGTGAAGGCTTAAGAT
8582 TGACCTGCTC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 4 0.12
37 30 0.88
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (36 bp):
GTTTGCTTCACTAATCTTCCGTGAAGGCTTAAGATG
Found at i:9993 original size:38 final size:35
Alignment explanation
Indices: 9951--10023 Score: 85
Period size: 38 Copynumber: 2.0 Consensus size: 35
9941 TTTTTCCATC
*
9951 ATTTTTCTTTTCTTATTTTTC-TTCTTCTCATTATTATT
1 ATTTTTCTTTTCAT-TTTTTCATT-TTCTC-TT-TTATT
*
9989 ATTTTTTTTTTCATTTTTTCATTTTCTCTTTTATT
1 ATTTTTCTTTTCATTTTTTCATTTTCTCTTTTATT
10024 TCTTCTTCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
35 5 0.16
36 2 0.06
37 11 0.34
38 14 0.44
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (35 bp):
ATTTTTCTTTTCATTTTTTCATTTTCTCTTTTATT
Found at i:19725 original size:45 final size:46
Alignment explanation
Indices: 19658--19762 Score: 169
Period size: 45 Copynumber: 2.3 Consensus size: 46
19648 CCATGCTTTG
19658 TTATTCACAAAAATAAATCCTAA-CTGCATGATATCTAATTCGCATGC
1 TTATTCA-AAAAATAAATCCTAATC-GCATGATATCTAATTCGCATGC
*
19705 TTATTCAAAAAATAAA-CCTAATCGCATGATATCTAGTTCGCATGC
1 TTATTCAAAAAATAAATCCTAATCGCATGATATCTAATTCGCATGC
19750 TTATTCAAAAAAT
1 TTATTCAAAAAAT
19763 GAAAATAAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
45 39 0.70
46 10 0.18
47 7 0.12
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (46 bp):
TTATTCAAAAAATAAATCCTAATCGCATGATATCTAATTCGCATGC
Found at i:24592 original size:40 final size:40
Alignment explanation
Indices: 24537--24617 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
24527 GTTGTATGAA
24537 TGATTGGGTAGTTTCTTCATCACAGGAGTTTCAAAACCTC
1 TGATTGGGTAGTTTCTTCATCACAGGAGTTTCAAAACCTC
24577 TGATTGGGTAGTTTCTTCATCACAGGAGTTTCAAAACCTC
1 TGATTGGGTAGTTTCTTCATCACAGGAGTTTCAAAACCTC
24617 T
1 T
24618 TATATTTGTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (40 bp):
TGATTGGGTAGTTTCTTCATCACAGGAGTTTCAAAACCTC
Found at i:26622 original size:33 final size:30
Alignment explanation
Indices: 26585--26706 Score: 102
Period size: 36 Copynumber: 3.7 Consensus size: 30
26575 CTATAATTGT
26585 AAATAAAATTATTCATATTATTATATTTTATTA
1 AAATAAAA-TATT-ATATTATTA-ATTTTATTA
26618 AAATAAGAATATTATAATTATATTAAATATTTATTA
1 AAATAA-AATATTAT-A-T-TATT-AAT-TTTATTA
* *
26654 AAATAAAAATAATATATTATTAATTATATT-
1 AAAT-AAAATATTATATTATTAATTTTATTA
* *
26684 AATTAAAATAATAATATTATTAA
1 AAATAAAAT-ATTATATTATTAA
26707 ACTATTAAAA
Statistics
Matches: 76, Mismatches: 5, Indels: 19
0.76 0.05 0.19
Matches are distributed among these distances:
29 5 0.07
30 14 0.18
31 5 0.07
32 5 0.07
33 15 0.20
34 4 0.05
35 7 0.09
36 19 0.25
37 2 0.03
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (30 bp):
AAATAAAATATTATATTATTAATTTTATTA
Found at i:26670 original size:30 final size:32
Alignment explanation
Indices: 26631--26712 Score: 82
Period size: 35 Copynumber: 2.6 Consensus size: 32
26621 TAAGAATATT
26631 ATAATTATATTAAA-TATTT-ATTAAAATAAAA
1 ATAA-TATATTAAACTATTTAATTAAAATAAAA
* *
26662 ATAATATATTATTAATTATATTAATTAAAATAATA
1 ATAATATATTA--AACTAT-TTAATTAAAATAAAA
26697 AT-AT-TATTAAACTATT
1 ATAATATATTAAACTATT
26713 AAAACTTATA
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
30 8 0.18
31 9 0.20
32 2 0.05
33 8 0.18
34 4 0.09
35 13 0.30
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (32 bp):
ATAATATATTAAACTATTTAATTAAAATAAAA
Found at i:26673 original size:35 final size:34
Alignment explanation
Indices: 26601--26699 Score: 103
Period size: 35 Copynumber: 2.9 Consensus size: 34
26591 AATTATTCAT
* * *
26601 ATTATTATAT-TTTATTAAAATAAGAATATTATA
1 ATTATTAAATATTTATTAAAATAAAAATAATATA
26634 ATTATATTAAATATTTATTAAAATAAAAATAATAT-
1 A-T-TATTAAATATTTATTAAAATAAAAATAATATA
* *
26669 ATTATTAATTATATTAATTAAAATAATAATA
1 ATTATTAA--ATATTTATTAAAATAAAAATA
26700 TTATTAAACT
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
33 7 0.12
34 2 0.04
35 27 0.48
36 20 0.36
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (34 bp):
ATTATTAAATATTTATTAAAATAAAAATAATATA
Found at i:26712 original size:29 final size:28
Alignment explanation
Indices: 26659--26714 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 28
26649 TATTAAAATA
26659 AAAATAATATATTATTAATTATATTAATT
1 AAAATAATATATTATTAA-TATATTAATT
26688 AAAATAATAATATTATTAA-ACTATTAA
1 AAAATAAT-ATATTATTAATA-TATTAA
26715 AACTTATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 1 0.04
29 14 0.56
30 10 0.40
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (28 bp):
AAAATAATATATTATTAATATATTAATT
Found at i:26741 original size:14 final size:15
Alignment explanation
Indices: 26709--26742 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
26699 ATTATTAAAC
*
26709 TATTAAAACTTATAA
1 TATTAAAACTTAGAA
26724 TATTAAAA-TTAGAA
1 TATTAAAACTTAGAA
26738 TATTA
1 TATTA
26743 TATTATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (15 bp):
TATTAAAACTTAGAA
Found at i:26892 original size:27 final size:27
Alignment explanation
Indices: 26839--26892 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
26829 TAATCTATTA
* *
26839 TATATTATTAAAATAAAAATATTATAT
1 TATATTATAAAAATAAAAATATAATAT
*
26866 TATATTATAAAAATTATAAATA-AATAT
1 TATATTATAAAAA-TAAAAATATAATAT
26893 AATTTAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (27 bp):
TATATTATAAAAATAAAAATATAATAT
Found at i:29220 original size:187 final size:182
Alignment explanation
Indices: 28895--29283 Score: 618
Period size: 187 Copynumber: 2.1 Consensus size: 182
28885 ATTTCTAATT
* * *
28895 TATATAA-AAATTAAATATTTTATAATTCAAAAAAACAGTTTATAATTAATTTAAATAATATATA
1 TATATAATATATTTAATATTTTATAATTCAAAAAAACAGTTTACAATTAATTTAAATAATATATA
28959 ATTATAAAAAAAAGTATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTATTGG
66 ATTATAAAAAAAAGTATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTATTGG
* *
29024 ATATTAAATTATTAATTGAGTTTTAAATGGTTTGGGCTGAGCCCATATTTTA
131 ATATTAAATTATTAATTGAGTTTTAAATGATTTGGGCTGAGCCCATATGTTA
* * *
29076 TATATAATATATTTAATATTTTTTAATTCAGAAAAATAGTTTACAATTAATTTAAATAATATATA
1 TATATAATATATTTAATATTTTATAATTCAAAAAAACAGTTTACAATTAATTTAAATAATATATA
*
29141 ATTATAAAATAAAAAATTTTATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTT
66 ATTAT--AA-AAAAAA--GTATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTT
* * *
29206 ATTGTATCTTAAATTATTAATTGGGTTTTAAATGATTTGGGCTGAGCCCATATGTTA
126 ATTGGATATTAAATTATTAATTGAGTTTTAAATGATTTGGGCTGAGCCCATATGTTA
29263 TATATAATATATTTAATATTT
1 TATATAATATATTTAATATTT
29284 AAAATTTTAT
Statistics
Matches: 190, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
181 7 0.04
182 56 0.29
184 2 0.01
185 6 0.03
187 119 0.63
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (182 bp):
TATATAATATATTTAATATTTTATAATTCAAAAAAACAGTTTACAATTAATTTAAATAATATATA
ATTATAAAAAAAAGTATATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTATTGG
ATATTAAATTATTAATTGAGTTTTAAATGATTTGGGCTGAGCCCATATGTTA
Found at i:29961 original size:32 final size:31
Alignment explanation
Indices: 29925--30001 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
29915 CGGGGCCGTG
*
29925 GGGCCTACCTAAGAACACATCTTAGGGCCGCA
1 GGGCCTACCTAAGAA-ACATCTCAGGGCCGCA
** **
29957 GGGCCTACCCGAGAATGATCTCAGGGCCGCA
1 GGGCCTACCTAAGAAACATCTCAGGGCCGCA
*
29988 GAGCCTACCTAAGA
1 GGGCCTACCTAAGA
30002 GTCACATTAG
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
31 24 0.65
32 13 0.35
ACGTcount: A:0.27, C:0.31, G:0.27, T:0.14
Consensus pattern (31 bp):
GGGCCTACCTAAGAAACATCTCAGGGCCGCA
Found at i:29984 original size:63 final size:63
Alignment explanation
Indices: 29878--30001 Score: 153
Period size: 63 Copynumber: 2.0 Consensus size: 63
29868 CACTAAGGGA
* * ** *
29878 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCGGGGCCGTGGGGCCTACCTAAGAAC
1 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
* *
29941 ACATCTTAGGGCC-GCAGGGCCTACCCGAGA-ATGATCTCAGGGCCGCAGAGCCTACCTAAGA
1 ACATCTTAGGGCCTG-AGAGCCTACCCAAGATA-GATCTCAGGGCCGCAGAGCCTACCTAAGA
30002 GTCACATTAG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
62 2 0.04
63 50 0.96
ACGTcount: A:0.26, C:0.29, G:0.28, T:0.17
Consensus pattern (63 bp):
ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
Found at i:30881 original size:7 final size:7
Alignment explanation
Indices: 30869--30913 Score: 90
Period size: 7 Copynumber: 6.4 Consensus size: 7
30859 GTCAAAGAAA
30869 GTCAACG
1 GTCAACG
30876 GTCAACG
1 GTCAACG
30883 GTCAACG
1 GTCAACG
30890 GTCAACG
1 GTCAACG
30897 GTCAACG
1 GTCAACG
30904 GTCAACG
1 GTCAACG
30911 GTC
1 GTC
30914 GGGTCGGGTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.27, C:0.29, G:0.29, T:0.16
Consensus pattern (7 bp):
GTCAACG
Found at i:30931 original size:22 final size:22
Alignment explanation
Indices: 30903--30967 Score: 121
Period size: 22 Copynumber: 3.0 Consensus size: 22
30893 AACGGTCAAC
30903 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
30925 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
*
30947 GGTCAACAGTCGGGTCGGGTC
1 GGTCAACGGTCGGGTCGGGTC
30968 AGACCGGTCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.11, C:0.23, G:0.48, T:0.18
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:30967 original size:5 final size:5
Alignment explanation
Indices: 30910--30950 Score: 55
Period size: 5 Copynumber: 7.8 Consensus size: 5
30900 AACGGTCAAC
*
30910 GGTCG GGTCG GGTCG GGTCAAC GGTCG GGTCG GGTCG GGTC
1 GGTCG GGTCG GGTCG GGTC--G GGTCG GGTCG GGTCG GGTC
30951 AACAGTCGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 28 0.88
7 4 0.12
ACGTcount: A:0.05, C:0.22, G:0.54, T:0.20
Consensus pattern (5 bp):
GGTCG
Found at i:30990 original size:19 final size:18
Alignment explanation
Indices: 30964--31061 Score: 117
Period size: 19 Copynumber: 5.2 Consensus size: 18
30954 AGTCGGGTCG
30964 GGTCAGACCGGTCAAACC
1 GGTCAGACCGGTCAAACC
30982 GGCTCAGACCGGTCAAACC
1 GG-TCAGACCGGTCAAACC
31001 GAGTCAGACCGGTCAAACC
1 G-GTCAGACCGGTCAAACC
*
31020 GGTTC-GAACCGGTTGAAACC
1 GG-TCAG-ACCGG-TCAAACC
*
31040 GGTCAAACCGGTCAGAACC
1 GGTCAGACCGGTCA-AACC
31059 GGT
1 GGT
31062 TGAAAACCGG
Statistics
Matches: 70, Mismatches: 3, Indels: 13
0.81 0.03 0.15
Matches are distributed among these distances:
18 6 0.09
19 55 0.79
20 9 0.13
ACGTcount: A:0.28, C:0.31, G:0.29, T:0.13
Consensus pattern (18 bp):
GGTCAGACCGGTCAAACC
Found at i:31007 original size:38 final size:38
Alignment explanation
Indices: 30964--31081 Score: 127
Period size: 38 Copynumber: 3.1 Consensus size: 38
30954 AGTCGGGTCG
30964 GGTCAGACCGGTCAAACCGGCTC-AGACCGG-TCAAACC
1 GGTCAGACCGGTCAAACCGGCTCGA-ACCGGTTCAAACC
* *
31001 GAGTCAGACCGGTCAAACCGGTTCGAACCGGTTGAAACC
1 G-GTCAGACCGGTCAAACCGGCTCGAACCGGTTCAAACC
* *
31040 GGTCAAACCGGTCAGAACCGG-TTGAAAACCGGTT-AAACC
1 GGTCAGACCGGTCA-AACCGGCTCG--AACCGGTTCAAACC
31079 GGT
1 GGT
31082 TTCCAGCAGC
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
37 1 0.01
38 40 0.56
39 22 0.31
40 8 0.11
ACGTcount: A:0.29, C:0.29, G:0.28, T:0.14
Consensus pattern (38 bp):
GGTCAGACCGGTCAAACCGGCTCGAACCGGTTCAAACC
Found at i:31062 original size:29 final size:28
Alignment explanation
Indices: 30964--31081 Score: 116
Period size: 29 Copynumber: 4.1 Consensus size: 28
30954 AGTCGGGTCG
*
30964 GGTCAG-ACCGGTCAAACCGGCTCAGACC
1 GGTCAGAACCGGTCAAACCGG-TCAAACC
*
30992 GGTCA-AACCGAGTCAGACCGGTCAAACC
1 GGTCAGAACCG-GTCAAACCGGTCAAACC
*
31020 GGTTC-GAACCGGTTGAAACCGGTCAAACC
1 GG-TCAGAACCGG-TCAAACCGGTCAAACC
* *
31049 GGTCAGAACCGGTTGAAAACCGGTTAAACC
1 GGTCAGAACCGG-T-CAAACCGGTCAAACC
31079 GGT
1 GGT
31082 TTCCAGCAGC
Statistics
Matches: 77, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
28 20 0.26
29 41 0.53
30 16 0.21
ACGTcount: A:0.29, C:0.29, G:0.28, T:0.14
Consensus pattern (28 bp):
GGTCAGAACCGGTCAAACCGGTCAAACC
Found at i:31082 original size:9 final size:9
Alignment explanation
Indices: 30964--31081 Score: 110
Period size: 9 Copynumber: 12.3 Consensus size: 9
30954 AGTCGGGTCG
*
30964 GGTCAGACC
1 GGTCAAACC
30973 GGTCAAACC
1 GGTCAAACC
*
30982 GGCTCAGACC
1 GG-TCAAACC
30992 GGTCAAACC
1 GGTCAAACC
*
31001 GAGTCAGACC
1 G-GTCAAACC
31011 GGTCAAACC
1 GGTCAAACC
*
31020 GGTTCGAACC
1 GG-TCAAACC
*
31030 GGTTGAAACC
1 GG-TCAAACC
31040 GGTCAAACC
1 GGTCAAACC
31049 GGTCAGAACC
1 GGTCA-AACC
*
31059 GGTTGAAAACC
1 GG-T-CAAACC
*
31070 GGTTAAACC
1 GGTCAAACC
31079 GGT
1 GGT
31082 TTCCAGCAGC
Statistics
Matches: 92, Mismatches: 11, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
9 45 0.49
10 39 0.42
11 7 0.08
12 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.28, T:0.14
Consensus pattern (9 bp):
GGTCAAACC
Found at i:37358 original size:32 final size:31
Alignment explanation
Indices: 37322--37398 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
37312 CGGGGCCGTG
*
37322 GGGCCTACCTAAGAACACATCTTAGGGCCGCA
1 GGGCCTACCTAAGAA-ACATCTCAGGGCCGCA
** **
37354 GGGCCTACCCGAGAATGATCTCAGGGCCGCA
1 GGGCCTACCTAAGAAACATCTCAGGGCCGCA
*
37385 GAGCCTACCTAAGA
1 GGGCCTACCTAAGA
37399 GTCACATTAG
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
31 24 0.65
32 13 0.35
ACGTcount: A:0.27, C:0.31, G:0.27, T:0.14
Consensus pattern (31 bp):
GGGCCTACCTAAGAAACATCTCAGGGCCGCA
Found at i:37381 original size:63 final size:63
Alignment explanation
Indices: 37275--37398 Score: 153
Period size: 63 Copynumber: 2.0 Consensus size: 63
37265 CACTAAGGGA
* * ** *
37275 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCGGGGCCGTGGGGCCTACCTAAGAAC
1 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
* *
37338 ACATCTTAGGGCC-GCAGGGCCTACCCGAGA-ATGATCTCAGGGCCGCAGAGCCTACCTAAGA
1 ACATCTTAGGGCCTG-AGAGCCTACCCAAGATA-GATCTCAGGGCCGCAGAGCCTACCTAAGA
37399 GTCACATTAG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
62 2 0.04
63 50 0.96
ACGTcount: A:0.26, C:0.29, G:0.28, T:0.17
Consensus pattern (63 bp):
ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
Found at i:38279 original size:7 final size:7
Alignment explanation
Indices: 38267--38304 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
38257 GTCAAAGAAA
38267 GTCAACG
1 GTCAACG
38274 GTCAACG
1 GTCAACG
*
38281 GTCAATG
1 GTCAACG
38288 GTCAACG
1 GTCAACG
38295 GTCAACG
1 GTCAACG
38302 GTC
1 GTC
38305 GGGTCGGGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.18
Consensus pattern (7 bp):
GTCAACG
Found at i:38322 original size:22 final size:22
Alignment explanation
Indices: 38294--38336 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
38284 AATGGTCAAC
38294 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
38316 GGTCAACGGTCGGGTCGGGTC
1 GGTCAACGGTCGGGTCGGGTC
38337 AACAGTCGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.09, C:0.23, G:0.49, T:0.19
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:38326 original size:17 final size:17
Alignment explanation
Indices: 38306--38354 Score: 89
Period size: 17 Copynumber: 2.9 Consensus size: 17
38296 TCAACGGTCG
38306 GGTCGGGTCGGGTCAAC
1 GGTCGGGTCGGGTCAAC
38323 GGTCGGGTCGGGTCAAC
1 GGTCGGGTCGGGTCAAC
*
38340 AGTCGGGTCGGGTCA
1 GGTCGGGTCGGGTCA
38355 GACCGGTCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.12, C:0.22, G:0.47, T:0.18
Consensus pattern (17 bp):
GGTCGGGTCGGGTCAAC
Found at i:38348 original size:22 final size:22
Alignment explanation
Indices: 38294--38353 Score: 76
Period size: 17 Copynumber: 3.0 Consensus size: 22
38284 AATGGTCAAC
*
38294 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACAGTCGGGTCGGGTCG
38316 GGTC-A-A--C-GGTCGGGTCG
1 GGTCAACAGTCGGGTCGGGTCG
38333 GGTCAACAGTCGGGTCGGGTC
1 GGTCAACAGTCGGGTCGGGTC
38354 AGACCGGTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
17 14 0.44
18 2 0.06
19 1 0.03
21 2 0.06
22 13 0.41
ACGTcount: A:0.12, C:0.23, G:0.47, T:0.18
Consensus pattern (22 bp):
GGTCAACAGTCGGGTCGGGTCG
Found at i:38376 original size:19 final size:18
Alignment explanation
Indices: 38350--38447 Score: 117
Period size: 19 Copynumber: 5.2 Consensus size: 18
38340 AGTCGGGTCG
38350 GGTCAGACCGGTCAAACC
1 GGTCAGACCGGTCAAACC
38368 GGCTCAGACCGGTCAAACC
1 GG-TCAGACCGGTCAAACC
38387 GAGTCAGACCGGTCAAACC
1 G-GTCAGACCGGTCAAACC
*
38406 GGTTC-GAACCGGTTGAAACC
1 GG-TCAG-ACCGG-TCAAACC
*
38426 GGTCAAACCGGTCAGAACC
1 GGTCAGACCGGTCA-AACC
38445 GGT
1 GGT
38448 TGAAAACCGG
Statistics
Matches: 70, Mismatches: 3, Indels: 13
0.81 0.03 0.15
Matches are distributed among these distances:
18 6 0.09
19 55 0.79
20 9 0.13
ACGTcount: A:0.28, C:0.31, G:0.29, T:0.13
Consensus pattern (18 bp):
GGTCAGACCGGTCAAACC
Found at i:38393 original size:38 final size:38
Alignment explanation
Indices: 38350--38467 Score: 127
Period size: 38 Copynumber: 3.1 Consensus size: 38
38340 AGTCGGGTCG
38350 GGTCAGACCGGTCAAACCGGCTC-AGACCGG-TCAAACC
1 GGTCAGACCGGTCAAACCGGCTCGA-ACCGGTTCAAACC
* *
38387 GAGTCAGACCGGTCAAACCGGTTCGAACCGGTTGAAACC
1 G-GTCAGACCGGTCAAACCGGCTCGAACCGGTTCAAACC
* *
38426 GGTCAAACCGGTCAGAACCGG-TTGAAAACCGGTT-AAACC
1 GGTCAGACCGGTCA-AACCGGCTCG--AACCGGTTCAAACC
38465 GGT
1 GGT
38468 TTCCAGCAGC
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
37 1 0.01
38 40 0.56
39 22 0.31
40 8 0.11
ACGTcount: A:0.29, C:0.29, G:0.28, T:0.14
Consensus pattern (38 bp):
GGTCAGACCGGTCAAACCGGCTCGAACCGGTTCAAACC
Found at i:38448 original size:29 final size:28
Alignment explanation
Indices: 38350--38467 Score: 116
Period size: 29 Copynumber: 4.1 Consensus size: 28
38340 AGTCGGGTCG
*
38350 GGTCAG-ACCGGTCAAACCGGCTCAGACC
1 GGTCAGAACCGGTCAAACCGG-TCAAACC
*
38378 GGTCA-AACCGAGTCAGACCGGTCAAACC
1 GGTCAGAACCG-GTCAAACCGGTCAAACC
*
38406 GGTTC-GAACCGGTTGAAACCGGTCAAACC
1 GG-TCAGAACCGG-TCAAACCGGTCAAACC
* *
38435 GGTCAGAACCGGTTGAAAACCGGTTAAACC
1 GGTCAGAACCGG-T-CAAACCGGTCAAACC
38465 GGT
1 GGT
38468 TTCCAGCAGC
Statistics
Matches: 77, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
28 20 0.26
29 41 0.53
30 16 0.21
ACGTcount: A:0.29, C:0.29, G:0.28, T:0.14
Consensus pattern (28 bp):
GGTCAGAACCGGTCAAACCGGTCAAACC
Found at i:38468 original size:9 final size:9
Alignment explanation
Indices: 38350--38467 Score: 110
Period size: 9 Copynumber: 12.3 Consensus size: 9
38340 AGTCGGGTCG
*
38350 GGTCAGACC
1 GGTCAAACC
38359 GGTCAAACC
1 GGTCAAACC
*
38368 GGCTCAGACC
1 GG-TCAAACC
38378 GGTCAAACC
1 GGTCAAACC
*
38387 GAGTCAGACC
1 G-GTCAAACC
38397 GGTCAAACC
1 GGTCAAACC
*
38406 GGTTCGAACC
1 GG-TCAAACC
*
38416 GGTTGAAACC
1 GG-TCAAACC
38426 GGTCAAACC
1 GGTCAAACC
38435 GGTCAGAACC
1 GGTCA-AACC
*
38445 GGTTGAAAACC
1 GG-T-CAAACC
*
38456 GGTTAAACC
1 GGTCAAACC
38465 GGT
1 GGT
38468 TTCCAGCAGC
Statistics
Matches: 92, Mismatches: 11, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
9 45 0.49
10 39 0.42
11 7 0.08
12 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.28, T:0.14
Consensus pattern (9 bp):
GGTCAAACC
Found at i:39774 original size:44 final size:41
Alignment explanation
Indices: 39695--39776 Score: 101
Period size: 44 Copynumber: 1.9 Consensus size: 41
39685 GCAACGCGAT
* * * *
39695 TTTGAAAAATGTGTTGCGATAGTTAAAATGTGTTGCGAGAG
1 TTTGAAAAATGTGTTACGATAATGAAAAAGTGTTGCGAGAG
39736 TTTGAAAAACGTGTTGTTACGATAATGAAAAAGTGTTGCGA
1 TTTGAAAAA--TG-TGTTACGATAATGAAAAAGTGTTGCGA
39777 TAGTGAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 9 0.26
43 2 0.06
44 23 0.68
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (41 bp):
TTTGAAAAATGTGTTACGATAATGAAAAAGTGTTGCGAGAG
Found at i:39777 original size:19 final size:20
Alignment explanation
Indices: 39697--39786 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 20
39687 AACGCGATTT
*
39697 TGAAAAATGTGTTGCGATAG
1 TGAAAAACGTGTTGCGATAG
* * *
39717 T-TAAAATGTGTTGCGAGAG
1 TGAAAAACGTGTTGCGATAG
*
39736 TTTGAAAAACGTGTTGTTACGATAA
1 --TGAAAAACGTGTTG---CGATAG
39761 TGAAAAA-GTGTTGCGATAG
1 TGAAAAACGTGTTGCGATAG
39780 TGAAAAA
1 TGAAAAA
39787 TCCAAAATAA
Statistics
Matches: 57, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
19 28 0.49
20 1 0.02
21 1 0.02
22 16 0.28
23 7 0.12
25 4 0.07
ACGTcount: A:0.38, C:0.06, G:0.27, T:0.30
Consensus pattern (20 bp):
TGAAAAACGTGTTGCGATAG
Found at i:40122 original size:6 final size:5
Alignment explanation
Indices: 40085--40118 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
40075 CCATCTCTTC
*
40085 TCGGG TCGGG TCGGG TCGGG TCTGG TCGTGG TCG
1 TCGGG TCGGG TCGGG TCGGG TCGGG TCG-GG TCG
40119 TGGTAATACG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.00, C:0.21, G:0.53, T:0.26
Consensus pattern (5 bp):
TCGGG
Found at i:40231 original size:18 final size:18
Alignment explanation
Indices: 40208--40259 Score: 104
Period size: 18 Copynumber: 2.9 Consensus size: 18
40198 AAAATCGCAT
40208 TGCGATTTTGTATTATAA
1 TGCGATTTTGTATTATAA
40226 TGCGATTTTGTATTATAA
1 TGCGATTTTGTATTATAA
40244 TGCGATTTTGTATTAT
1 TGCGATTTTGTATTAT
40260 CGCGTTGCGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.25, C:0.06, G:0.17, T:0.52
Consensus pattern (18 bp):
TGCGATTTTGTATTATAA
Found at i:40270 original size:21 final size:21
Alignment explanation
Indices: 40244--40311 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
40234 TGTATTATAA
40244 TGCGATTTTGTATTATCGCGT
1 TGCGATTTTGTATTATCGCGT
* **
40265 TGCGA--TGGTCAGAATCGCGT
1 TGCGATTTTGT-ATTATCGCGT
*
40285 TGCAATTTTGTATTATCGCGT
1 TGCGATTTTGTATTATCGCGT
40306 TGCGAT
1 TGCGAT
40312 AGTCAAAATC
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 3 0.08
20 12 0.33
21 18 0.50
22 3 0.08
ACGTcount: A:0.18, C:0.16, G:0.26, T:0.40
Consensus pattern (21 bp):
TGCGATTTTGTATTATCGCGT
Found at i:40283 original size:20 final size:20
Alignment explanation
Indices: 40258--40330 Score: 67
Period size: 20 Copynumber: 3.6 Consensus size: 20
40248 ATTTTGTATT
* *
40258 ATCGCGTTGCGATGGTCAGA
1 ATCGCGTTGCGATAGTCAAA
* * **
40278 ATCGCGTTGCAATTTTGT-ATT
1 ATCGCGTTGCGA--TAGTCAAA
40299 ATCGCGTTGCGATAGTCAAA
1 ATCGCGTTGCGATAGTCAAA
40319 ATCGCGTTGCGA
1 ATCGCGTTGCGA
40331 ATCTGGAAAC
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
19 3 0.07
20 24 0.57
21 12 0.29
22 3 0.07
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTCAAA
Found at i:40294 original size:41 final size:41
Alignment explanation
Indices: 40248--40328 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
40238 TTATAATGCG
* *
40248 ATTTTGTATTATCGCGTTGCGATGGTCAGAATCGCGTTGCA
1 ATTTTGTATTATCGCGTTGCGATAGTCAAAATCGCGTTGCA
40289 ATTTTGTATTATCGCGTTGCGATAGTCAAAATCGCGTTGC
1 ATTTTGTATTATCGCGTTGCGATAGTCAAAATCGCGTTGC
40329 GAATCTGGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (41 bp):
ATTTTGTATTATCGCGTTGCGATAGTCAAAATCGCGTTGCA
Found at i:40767 original size:32 final size:32
Alignment explanation
Indices: 40726--40817 Score: 166
Period size: 32 Copynumber: 2.9 Consensus size: 32
40716 AGTACAAGTA
40726 TGTCGCCATCCCTTCCATGCGATACCAAAGGG
1 TGTCGCCATCCCTTCCATGCGATACCAAAGGG
40758 TGTCGCCATCCCTTCCATGCGATACCAAAGGG
1 TGTCGCCATCCCTTCCATGCGATACCAAAGGG
* *
40790 TGTCGCCATCCCTTCCAGGCGACACCAA
1 TGTCGCCATCCCTTCCATGCGATACCAA
40818 TGAGTATTTT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 58 1.00
ACGTcount: A:0.22, C:0.37, G:0.21, T:0.21
Consensus pattern (32 bp):
TGTCGCCATCCCTTCCATGCGATACCAAAGGG
Found at i:41161 original size:41 final size:41
Alignment explanation
Indices: 41104--41202 Score: 189
Period size: 41 Copynumber: 2.4 Consensus size: 41
41094 CGCCTGGAGC
41104 ACCTGGCGACCAATCTTATTTTTGTACAGGTCACTCGGAAT
1 ACCTGGCGACCAATCTTATTTTTGTACAGGTCACTCGGAAT
*
41145 ACCTGGCGACCAATCTTATTTTTGTACAGGTCGCTCGGAAT
1 ACCTGGCGACCAATCTTATTTTTGTACAGGTCACTCGGAAT
41186 ACCTGGCGACCAATCTT
1 ACCTGGCGACCAATCTT
41203 TTTACTATAG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 57 1.00
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (41 bp):
ACCTGGCGACCAATCTTATTTTTGTACAGGTCACTCGGAAT
Found at i:44864 original size:20 final size:20
Alignment explanation
Indices: 44841--44910 Score: 113
Period size: 20 Copynumber: 3.5 Consensus size: 20
44831 AAAGGTTCCA
*
44841 AAATCGCAACGCGAATATAT
1 AAATCGCAACGCGAATATGT
44861 AAATCGCAACGCGAATATGT
1 AAATCGCAACGCGAATATGT
* *
44881 AAATTGCAACGCGAATTTGT
1 AAATCGCAACGCGAATATGT
44901 AAATCGCAAC
1 AAATCGCAAC
44911 ACATAAGTCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.21
Consensus pattern (20 bp):
AAATCGCAACGCGAATATGT
Found at i:44930 original size:40 final size:41
Alignment explanation
Indices: 44839--44939 Score: 109
Period size: 40 Copynumber: 2.5 Consensus size: 41
44829 ACAAAGGTTC
* * * *
44839 CAAAATCGCAACGCGAATATATAAATCGCAACGCGAATATGT
1 CAAATTCGCAACGCGAATTTATAAATCGCAACAC-AATAAGT
*
44881 -AAATT-GCAACGCGAATTTGTAAATCGCAACAC-ATAAGT
1 CAAATTCGCAACGCGAATTTATAAATCGCAACACAATAAGT
*
44919 CAAATTCGCAACACGGAATTT
1 CAAATTCGCAACGC-GAATTT
44940 CAAATTCACA
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
38 5 0.10
39 5 0.10
40 30 0.60
41 10 0.20
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.22
Consensus pattern (41 bp):
CAAATTCGCAACGCGAATTTATAAATCGCAACACAATAAGT
Found at i:44944 original size:21 final size:20
Alignment explanation
Indices: 44918--44959 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
44908 AACACATAAG
*
44918 TCAAATTCGCAACACGGAATT
1 TCAAATTCACAACAC-GAATT
*
44939 TCAAATTCACAACGCGAATT
1 TCAAATTCACAACACGAATT
44959 T
1 T
44960 ATTTTTCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (20 bp):
TCAAATTCACAACACGAATT
Found at i:48733 original size:13 final size:13
Alignment explanation
Indices: 48715--48757 Score: 68
Period size: 13 Copynumber: 3.3 Consensus size: 13
48705 ATCGGTCAAC
48715 GGTCAACGGGTCG
1 GGTCAACGGGTCG
*
48728 GGTCAATGGGTCG
1 GGTCAACGGGTCG
*
48741 GGTAAACGGGTCG
1 GGTCAACGGGTCG
48754 GGTC
1 GGTC
48758 GGGTTGTAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.16, C:0.19, G:0.47, T:0.19
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:49611 original size:20 final size:20
Alignment explanation
Indices: 49586--49626 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
49576 ATCGATATAG
*
49586 GTAAACAGTACTATCGCAAT
1 GTAAACAGTACTATCACAAT
49606 GTAAACAGTACTATCACAAT
1 GTAAACAGTACTATCACAAT
49626 G
1 G
49627 CGATTTTCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (20 bp):
GTAAACAGTACTATCACAAT
Found at i:49651 original size:20 final size:20
Alignment explanation
Indices: 49623--49661 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
49613 GTACTATCAC
49623 AATGCGATTTTCAAATTCGT
1 AATGCGATTTTCAAATTCGT
*
49643 AATGTGATTTTCAAATTCG
1 AATGCGATTTTCAAATTCG
49662 CAACGCTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (20 bp):
AATGCGATTTTCAAATTCGT
Found at i:49712 original size:20 final size:20
Alignment explanation
Indices: 49687--49724 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
49677 ATATAGGTAA
49687 ACAGTACTATCGCAATGTAC
1 ACAGTACTATCGCAATGTAC
*
49707 ACAGTATTATCGCAATGT
1 ACAGTACTATCGCAATGT
49725 GATTTTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (20 bp):
ACAGTACTATCGCAATGTAC
Found at i:49723 original size:97 final size:97
Alignment explanation
Indices: 49546--49738 Score: 323
Period size: 97 Copynumber: 2.0 Consensus size: 97
49536 GTACTATCAC
*
49546 AATGCGATTTTCAAATTCGCAACGCTAATTATCGATATAGGTAAACAGTACTATCGCAATGTAAA
1 AATGCGATTTTCAAATTCGCAACGCTAATTACCGATATAGGTAAACAGTACTATCGCAATGTAAA
49611 CAGTACTATCACAATGCGATTTTCAAATTCGT
66 CAGTACTATCACAATGCGATTTTCAAATTCGT
* * *
49643 AATGTGATTTTCAAATTCGCAACGCTAATTGCCGATATAGGTAAACAGTACTATCGCAATGTACA
1 AATGCGATTTTCAAATTCGCAACGCTAATTACCGATATAGGTAAACAGTACTATCGCAATGTAAA
* * *
49708 CAGTATTATCGCAATGTGATTTTCAAATTCG
66 CAGTACTATCACAATGCGATTTTCAAATTCG
49739 CAACGCTAAT
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
97 89 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32
Consensus pattern (97 bp):
AATGCGATTTTCAAATTCGCAACGCTAATTACCGATATAGGTAAACAGTACTATCGCAATGTAAA
CAGTACTATCACAATGCGATTTTCAAATTCGT
Found at i:49828 original size:20 final size:22
Alignment explanation
Indices: 49805--49854 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 22
49795 TGAGTTGTGA
49805 ATTTGGAAAATTC-CGTTGCG-
1 ATTTGGAAAATTCGCGTTGCGT
*
49825 ATTT--ACATATTCGCGTTGCGT
1 ATTTGGA-AAATTCGCGTTGCGT
49846 ATTTGGAAA
1 ATTTGGAAA
49855 CTGTGTTGCG
Statistics
Matches: 23, Mismatches: 2, Indels: 8
0.70 0.06 0.24
Matches are distributed among these distances:
18 1 0.04
19 5 0.22
20 11 0.48
21 4 0.17
22 1 0.04
23 1 0.04
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (22 bp):
ATTTGGAAAATTCGCGTTGCGT
Found at i:49899 original size:19 final size:20
Alignment explanation
Indices: 49859--49905 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
49849 TGGAAACTGT
* *
49859 GTTGCGAAATTGGAGTTCGC
1 GTTGCGAAATTCGAGATCGC
49879 GTTGCGAAA-TCGAGATCGC
1 GTTGCGAAATTCGAGATCGC
49898 GTTGCGAA
1 GTTGCGAA
49906 TTTGTTGGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 16 0.64
20 9 0.36
ACGTcount: A:0.23, C:0.17, G:0.34, T:0.26
Consensus pattern (20 bp):
GTTGCGAAATTCGAGATCGC
Found at i:62972 original size:24 final size:24
Alignment explanation
Indices: 62928--62973 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
62918 TTTAAAAGAT
*
62928 AAAACTTAAAATAAAATGAAAATG
1 AAAACTTAAAAGAAAATGAAAATG
*
62952 AAAACTTGAAAAGAGAA-GAAAA
1 AAAACTT-AAAAGAAAATGAAAA
62974 AAAAGAACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.67, C:0.04, G:0.13, T:0.15
Consensus pattern (24 bp):
AAAACTTAAAAGAAAATGAAAATG
Found at i:66475 original size:103 final size:103
Alignment explanation
Indices: 66302--66622 Score: 570
Period size: 103 Copynumber: 3.1 Consensus size: 103
66292 TAATGTCCAT
* * * *
66302 AAGGACTACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
*
66367 GACTTCACACATGTTCCAAAGAATACATATATGTCCTG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
*
66405 AAGGACCACATATCATTCCTTAAGAATCATTTACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
*
66470 TACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
*
66508 AAGGACCACATATCATTCCTTAAGAATCATATATATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
66573 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66611 AAGGACCACATA
1 AAGGACCACATA
66623 GACCCTCGAC
Statistics
Matches: 208, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 208 1.00
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.27
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:68208 original size:21 final size:21
Alignment explanation
Indices: 68184--68228 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
68174 CCATGTTCGT
* * *
68184 TTGAGGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
68205 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
68226 TTG
1 TTG
68229 CCTAGAAATC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.13, C:0.24, G:0.31, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:71382 original size:23 final size:23
Alignment explanation
Indices: 71356--71403 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
71346 TGCACCGAAT
71356 TGCCACATAGAATTACACCGTAG
1 TGCCACATAGAATTACACCGTAG
* * * *
71379 TGCCGCGTAGAATTGCATCGTAG
1 TGCCACATAGAATTACACCGTAG
71402 TG
1 TG
71404 TCATATAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (23 bp):
TGCCACATAGAATTACACCGTAG
Found at i:71538 original size:21 final size:21
Alignment explanation
Indices: 71512--71551 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
71502 TCCAAAGAAT
71512 ACATAT-ATGTCCTGAAGAACC
1 ACATATCAT-TCCTGAAGAACC
*
71533 ACATATCATTCCTTAAGAA
1 ACATATCATTCCTGAAGAA
71552 TCATTTACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.28
Consensus pattern (21 bp):
ACATATCATTCCTGAAGAACC
Found at i:71609 original size:103 final size:103
Alignment explanation
Indices: 71423--71743 Score: 561
Period size: 103 Copynumber: 3.1 Consensus size: 103
71413 AATGTCCATA
* * * *
71423 AAGGACTACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
*
71488 GACTTCACACATGTTCCAAAGAATACATATATGTCCTG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
* *
71526 AAGAACCACATATCATTCCTTAAGAATCATTTACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
*
71591 TACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
*
71629 AAGGACCACATATCATTCCTTAAGAATCATATATATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
71694 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
71732 AAGGACCACATA
1 AAGGACCACATA
71744 GACCCTCGAC
Statistics
Matches: 206, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
103 206 1.00
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.27
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:73348 original size:21 final size:21
Alignment explanation
Indices: 73324--73368 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
73314 CCATGTTCGT
* * *
73324 TTGAGGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
73345 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
73366 TTG
1 TTG
73369 CCTAGAAATC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.13, C:0.24, G:0.31, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:75067 original size:11 final size:11
Alignment explanation
Indices: 75051--75075 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
75041 AAAGTGATAG
75051 TAAATCTGCGA
1 TAAATCTGCGA
75062 TAAATCTGCGA
1 TAAATCTGCGA
75073 TAA
1 TAA
75076 GCATTGCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (11 bp):
TAAATCTGCGA
Found at i:75540 original size:23 final size:23
Alignment explanation
Indices: 75475--75551 Score: 109
Period size: 23 Copynumber: 3.3 Consensus size: 23
75465 CCATAATAAA
** ** *
75475 AAAACTCTGTTTACCGGAGCCGA
1 AAAACTCTGTTTACTAGAGTTGG
75498 AAAACTCTGTTTACTAGAGTTGG
1 AAAACTCTGTTTACTAGAGTTGG
75521 AAAACTCTGTTTACTAGAGTTGG
1 AAAACTCTGTTTACTAGAGTTGG
75544 AAAACTCT
1 AAAACTCT
75552 ATTTCTACAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30
Consensus pattern (23 bp):
AAAACTCTGTTTACTAGAGTTGG
Found at i:75612 original size:23 final size:25
Alignment explanation
Indices: 75586--75644 Score: 68
Period size: 29 Copynumber: 2.3 Consensus size: 25
75576 CAAAAAATAT
75586 ATAATT-T-TACCTTATATTTAAGA
1 ATAATTATATACCTTATATTTAAGA
75609 ATAATTACAATAATACCTTATATTTAAGA
1 ATAATT---AT-ATACCTTATATTTAAGA
75638 ATAATTA
1 ATAATTA
75645 CAATAATACT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
23 6 0.20
26 1 0.03
27 1 0.03
29 22 0.73
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.42
Consensus pattern (25 bp):
ATAATTATATACCTTATATTTAAGA
Found at i:75626 original size:29 final size:29
Alignment explanation
Indices: 75593--75653 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
75583 TATATAATTT
75593 TACCTTATATTTAAGAATAATTACAATAA
1 TACCTTATATTTAAGAATAATTACAATAA
75622 TACCTTATATTTAAGAATAATTACAATAA
1 TACCTTATATTTAAGAATAATTACAATAA
75651 TAC
1 TAC
75654 TCTCTCTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.48, C:0.11, G:0.03, T:0.38
Consensus pattern (29 bp):
TACCTTATATTTAAGAATAATTACAATAA
Found at i:78269 original size:13 final size:14
Alignment explanation
Indices: 78237--78273 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
78227 TGAGTTGTGA
78237 AGGAAAAAAAAGTT
1 AGGAAAAAAAAGTT
78251 AGGAAAATAAAA-TT
1 AGGAAAA-AAAAGTT
78265 A-GAAAAAAA
1 AGGAAAAAAA
78274 CTAAAAAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 3 0.14
13 5 0.23
14 10 0.45
15 4 0.18
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (14 bp):
AGGAAAAAAAAGTT
Found at i:79219 original size:13 final size:14
Alignment explanation
Indices: 79187--79223 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
79177 TGAGTTGTGA
79187 AGGAAAAAAAAGTT
1 AGGAAAAAAAAGTT
79201 AGGAAAATAAAA-TT
1 AGGAAAA-AAAAGTT
79215 A-GAAAAAAA
1 AGGAAAAAAA
79224 CTAAAAAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 3 0.14
13 5 0.23
14 10 0.45
15 4 0.18
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (14 bp):
AGGAAAAAAAAGTT
Found at i:79657 original size:946 final size:946
Alignment explanation
Indices: 77172--80014 Score: 5386
Period size: 951 Copynumber: 3.0 Consensus size: 946
77162 TTTAAAAGGG
77172 AAAATTGTTGAAAAACAGATAAAATAAAAGGAGAAAATACCAAAATAAAAATAAAAAAAATATAT
1 AAAATTGTTGAAAAACAGATAAAATAAAAGGAGAAAATACCAAAATAAAAAT-AAAAAAATATAT
77237 AAAATAATGGAAATGACAATACCAATAAAAAATATAAACAAGGTTGAGTTGTGAAGG-AAAAAAA
65 AAAATAATGGAAATGACAATACCAATAAAAAATATAAACAAGGTTGAGTTGTGAAGGAAAAAAAA
*
77301 GTTAGGAAAATAAAATTAGAAAAAAACTAAAAAAGTAAATAAATAAATAGATAAAGGGACCAAAA
130 GTTAGGAAAATAAAATTAGAAAAAAACTAAAAAAGTAAATAAATAATTAGATAAAGGGACCAAAA
77366 TGAATTGAATTGGACTTTGTGGACTGAAATTGATACTAAAGACCAAACTGCAAAAAAAA-AAGAA
195 TGAATTGAATTGGACTTTGTGGACTGAAATTGATACTAAAGACCAAACTGCAAAAAAAATAA-AA
77430 TTTGAGGGTTAATTTGCAAAGCATAGATAGTGACTAAATTGAATGAATTGAGAATCCATACGTGA
259 TTTGAGGGTTAATTTGCAAAGCATAGATAGTGACTAAATTGAATGAATTGAGAATCCATACGTGA
77495 AATTACAAACGATGACCATATTGTAATGCGACTCAAAACAACAGGGATCACGAAGAGAATTTAAG
324 AATTACAAACGATGACCATATTGTAATGCGACTCAAAACAACAGGGATCACGAAGAGAATTTAAG
*
77560 AATATCCTATTTATAAAACGGTCCTCGGTATATAAATACCCAAAAATGCCCCTTTTCACTCATTT
389 AATCTCCTATTTATAAAACGGTCCTCGGTATATAAATACCCAAAAATGCCCCTTTTCACTCATTT
77625 GTAACATTTTCAATTTCAATTTCGTTTTCGTATGTTTTTGCCTTCGGACTTGCTTTGGTTGTTTT
454 GTAACATTTTCAATTTCAATTTCGTTTTCGTATGTTTTTGCCTTCGGACTTGCTTTGGTTGTTTT
*
77690 CTCTGATGATGGTTTCTGTTTTATGTACTGTTGATATTGGTTATGTTGTCTTTTGTGGGACGGTT
519 CTCTGATGATGGTTTCTGTTTTATGTACTGTTGATATTGGTTATGTTGTCTTTTGTGGGATGGTT
*
77755 GTGATTTTGTTCGACCGTGGTGGTCTGGCTCACTGTGTTGATGGTTTGGTATCATGGTGTATCAC
584 GTGATTTTGTTCGACCGTGGTGGTCTGGCTCACTGTGTTGATGGTTTGGTATCGTGGTGTATCAC
77820 GGTTATGTTACCGGGATGTTTATGTGTGCCCTCTCTCGTCCAGTTGTGATGATACTTATAGGCCT
649 GGTTATGTTACCGGGATGTTTATGTGTGCCCTCTCTCGTCCAGTTGTGATGATACTTATAGGCCT
* *
77885 TCATCGGCCGTTGGTCTGTTCTGAAATTCGAGGCTCTCGTGGCCGTTGAGGTCGGACACCCCGGG
714 TCATCGGCCGTTGGTCTGTTCTGAAATTCGGGGCTCTCGTGGCCGTTGAGGCCGGACACCCCGGG
77950 ATGGGTCAGTCCCGGGGATCTCGGCCGGCCGTTGACACTGCTGACCGTTTGGCTCCCTGACTTTG
779 ATGGGTCAGTCCCGGGGATCTCGGCCGGCCGTTGACACTGCTGACCGTTTGGCTCCCTGACTTTG
78015 CGGCATGAGAAGGGTTGAATGAAACCCTAGTCTTTTGCAACCTTGACCGTTGATCTCCTATCATG
844 CGGCATGAGAAGGGTTGAATGAAACCCTAGTCTTTTGCAACCTTGACCGTTGATCTCCTATCATG
78080 ATCCAACGGCTATGAACTGTGCGGCACTGGACTTAGAT
909 ATCCAACGGCTATGAACTGTGCGGCACTGGACTTAGAT
*
78118 AAAATTGTTG-AAAACATATAAAATAAAAGGAGAAAATACCAAAATAAAAATTAAAAAAATATAT
1 AAAATTGTTGAAAAACAGATAAAATAAAAGGAGAAAATACCAAAATAAAAA-TAAAAAAATATAT
78182 AAAATAATGGAAATGACAATACCAATAAAAAAATATAAACAAGGTTGAGTTGTGAAGGAAAAAAA
65 AAAATAATGGAAATGACAATACCAAT-AAAAAATATAAACAAGGTTGAGTTGTGAAGGAAAAAAA
78247 AGTTAGGAAAATAAAATTAGAAAAAAACTAAAAAAGTAAATAAATAAATAAATAGATAAAGGGAC
129 AGTTAGGAAAATAAAATTAGAAAAAAACTAAAAAAGTAAATAAAT-AAT---TAGATAAAGGGAC
78312 CAAAATGAATTGAATTGGACTTTGTGGACTGAAATTGATACTAAAGACCAAACTGCAAAAAAAAT
190 CAAAATGAATTGAATTGGACTTTGTGGACTGAAATTGATACTAAAGACCAAACTGCAAAAAAAAT
*
78377 AGAATTTGAGGGTTAATTTGCAAAGCATAGATAGTGACTAAATTGAATGAATTGAGAATCCATAC
255 AAAATTTGAGGGTTAATTTGCAAAGCATAGATAGTGACTAAATTGAATGAATTGAGAATCCATAC
*
78442 GTGAAATTACAAACGATGACCATATTGTAATGCGACTCAAAACAATAGGGATCACGAAGAGAATT
320 GTGAAATTACAAACGATGACCATATTGTAATGCGACTCAAAACAACAGGGATCACGAAGAGAATT
78507 TAAGAATCTCCTATTTATAAAACGGTCCTCGGTATATAAATACCCAAAAATGCCCCTTTTCACTC
385 TAAGAATCTCCTATTTATAAAACGGTCCTCGGTATATAAATACCCAAAAATGCCCCTTTTCACTC
*
78572 ATTTGTAACATTTTCAATTTCAATTTCGTTTTCGTATGTTTTTGCCTTCGGACTTGTTTTGGTTG
450 ATTTGTAACATTTTCAATTTCAATTTCGTTTTCGTATGTTTTTGCCTTCGGACTTGCTTTGGTTG
78637 TTTTCTCTGATGATGGTTTCTGTTTTATGTACTGTTGATATTGGTTATGTTGTCTTTTGTGGGAT
515 TTTTCTCTGATGATGGTTTCTGTTTTATGTACTGTTGATATTGGTTATGTTGTCTTTTGTGGGAT
*
78702 GGTTGTGATTTTGTTCGACCGTGGTGGTCTGGCTCATTGTGTTGATGGTTTGGTATCGTGGTGTA
580 GGTTGTGATTTTGTTCGACCGTGGTGGTCTGGCTCACTGTGTTGATGGTTTGGTATCGTGGTGTA
* *
78767 TCACGGTTATGTTACCGGGATGTTTATTTGTGCCCTCTCTCATCCAGTTGTGATGATACTTATAG
645 TCACGGTTATGTTACCGGGATGTTTATGTGTGCCCTCTCTCGTCCAGTTGTGATGATACTTATAG
* *
78832 GCCTTCATCGGCCGTTGGTCTGTTTTGAAATTCGGGGCTCTCGTGGCCATTGAGGCCGGACACCC
710 GCCTTCATCGGCCGTTGGTCTGTTCTGAAATTCGGGGCTCTCGTGGCCGTTGAGGCCGGACACCC
78897 CGGGATGGGTCAGTCCCGGGGATCTCGGCCGGCCGTTGACACTGCTGACCGTTTGGCTCCCTGAC
775 CGGGATGGGTCAGTCCCGGGGATCTCGGCCGGCCGTTGACACTGCTGACCGTTTGGCTCCCTGAC
78962 TTTGCGGCATGAGAAGGGTTGAATGAAACCCTAGTCTTTTGCAACCTTGACCGTTGATCTCCTAT
840 TTTGCGGCATGAGAAGGGTTGAATGAAACCCTAGTCTTTTGCAACCTTGACCGTTGATCTCCTAT
79027 CATGATCCAACGGCTATGAACTGTGCGGCACTGGACTTAGAT
905 CATGATCCAACGGCTATGAACTGTGCGGCACTGGACTTAGAT
*
79069 AAAATTGTTGAAAAACAGATAAAATAAAAGGAGAAAATACCAAAATAAAAATAAAAATATATATA
1 AAAATTGTTGAAAAACAGATAAAATAAAAGGAGAAAATACCAAAATAAAAATAAAAAAATATATA
79134 AAATAATGGAAATGACAATACCAATAAAAAATATAAACAAGGTTGAGTTGTGAAGGAAAAAAAAG
66 AAATAATGGAAATGACAATACCAATAAAAAATATAAACAAGGTTGAGTTGTGAAGGAAAAAAAAG
79199 TTAGGAAAATAAAATTAGAAAAAAACTAAAAAAGTAAATAAATAATTAGATAAAGGGACCAAAAT
131 TTAGGAAAATAAAATTAGAAAAAAACTAAAAAAGTAAATAAATAATTAGATAAAGGGACCAAAAT
*
79264 GAATTGAATTGGACTTTGTGGACTAAAATTGATACTAAAGACCAAACTGCAAAAAAAATAAAATT
196 GAATTGAATTGGACTTTGTGGACTGAAATTGATACTAAAGACCAAACTGCAAAAAAAATAAAATT
79329 TGAGGGTTAATTTGCAAAGCATAGATAGTGACTAAATTGAATGAATTGAGAATCCATACGTGAAA
261 TGAGGGTTAATTTGCAAAGCATAGATAGTGACTAAATTGAATGAATTGAGAATCCATACGTGAAA
79394 TTACAAACGATGACCATATTGTAATGCGACTCAAAACAACAGGGATCACGAAGAGAATTTAAGAA
326 TTACAAACGATGACCATATTGTAATGCGACTCAAAACAACAGGGATCACGAAGAGAATTTAAGAA
79459 TCTCCTATTTATAAAACGGTCCTCGGTATATAAATACCCAAAAATGCCCCTTTTCACTCATTTGT
391 TCTCCTATTTATAAAACGGTCCTCGGTATATAAATACCCAAAAATGCCCCTTTTCACTCATTTGT
79524 AACATTTTCAATTTCAATTTCGTTTTCGTATGTTTTTGCCTTCGGACTTGCTTTGGTTGTTTTCT
456 AACATTTTCAATTTCAATTTCGTTTTCGTATGTTTTTGCCTTCGGACTTGCTTTGGTTGTTTTCT
*
79589 CTGATGATGGTTTATGTTTTATGTACTGTTGATATTGGTTATGTTGTCTTTTGTGGGATGGTTGT
521 CTGATGATGGTTTCTGTTTTATGTACTGTTGATATTGGTTATGTTGTCTTTTGTGGGATGGTTGT
* *
79654 GATTTTGCTCGACCGTGGTGGTCTGGCTCACTGTGTTGATGGTTTGCTATCGTGGTGTATCACGG
586 GATTTTGTTCGACCGTGGTGGTCTGGCTCACTGTGTTGATGGTTTGGTATCGTGGTGTATCACGG
79719 TTATGTTACCGGGATGTTTATGTGTGCCCTCTCTCGTCCAGTTGTGATGATACTTATAGGCCTTC
651 TTATGTTACCGGGATGTTTATGTGTGCCCTCTCTCGTCCAGTTGTGATGATACTTATAGGCCTTC
* *
79784 ATTGGCCGTTGGTCTGTTCTGAAATTCGGGGCTCTCATGGCCGTTGAGGCCGGACACCCCGGGAT
716 ATCGGCCGTTGGTCTGTTCTGAAATTCGGGGCTCTCGTGGCCGTTGAGGCCGGACACCCCGGGAT
*
79849 GGGTCAGTCCCGGGGATCTTGGCCGGCCGTTGACACTGCTGACCGTTTGGCTCCCTGACTTTGCG
781 GGGTCAGTCCCGGGGATCTCGGCCGGCCGTTGACACTGCTGACCGTTTGGCTCCCTGACTTTGCG
79914 GCATGAGAAGGGTTGAATGAAACCCTAGTCTTTTGCAACCTTGACCGTTGATCTCCTATCATGAT
846 GCATGAGAAGGGTTGAATGAAACCCTAGTCTTTTGCAACCTTGACCGTTGATCTCCTATCATGAT
79979 CCAACGGCTATGAACTGTGCGGCACTGGACTTAGAT
911 CCAACGGCTATGAACTGTGCGGCACTGGACTTAGAT
80015 GAAACCTTAT
Statistics
Matches: 1856, Mismatches: 32, Indels: 18
0.97 0.02 0.01
Matches are distributed among these distances:
945 77 0.04
946 797 0.43
947 51 0.03
948 2 0.00
949 3 0.00
950 83 0.04
951 803 0.43
952 40 0.02
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (946 bp):
AAAATTGTTGAAAAACAGATAAAATAAAAGGAGAAAATACCAAAATAAAAATAAAAAAATATATA
AAATAATGGAAATGACAATACCAATAAAAAATATAAACAAGGTTGAGTTGTGAAGGAAAAAAAAG
TTAGGAAAATAAAATTAGAAAAAAACTAAAAAAGTAAATAAATAATTAGATAAAGGGACCAAAAT
GAATTGAATTGGACTTTGTGGACTGAAATTGATACTAAAGACCAAACTGCAAAAAAAATAAAATT
TGAGGGTTAATTTGCAAAGCATAGATAGTGACTAAATTGAATGAATTGAGAATCCATACGTGAAA
TTACAAACGATGACCATATTGTAATGCGACTCAAAACAACAGGGATCACGAAGAGAATTTAAGAA
TCTCCTATTTATAAAACGGTCCTCGGTATATAAATACCCAAAAATGCCCCTTTTCACTCATTTGT
AACATTTTCAATTTCAATTTCGTTTTCGTATGTTTTTGCCTTCGGACTTGCTTTGGTTGTTTTCT
CTGATGATGGTTTCTGTTTTATGTACTGTTGATATTGGTTATGTTGTCTTTTGTGGGATGGTTGT
GATTTTGTTCGACCGTGGTGGTCTGGCTCACTGTGTTGATGGTTTGGTATCGTGGTGTATCACGG
TTATGTTACCGGGATGTTTATGTGTGCCCTCTCTCGTCCAGTTGTGATGATACTTATAGGCCTTC
ATCGGCCGTTGGTCTGTTCTGAAATTCGGGGCTCTCGTGGCCGTTGAGGCCGGACACCCCGGGAT
GGGTCAGTCCCGGGGATCTCGGCCGGCCGTTGACACTGCTGACCGTTTGGCTCCCTGACTTTGCG
GCATGAGAAGGGTTGAATGAAACCCTAGTCTTTTGCAACCTTGACCGTTGATCTCCTATCATGAT
CCAACGGCTATGAACTGTGCGGCACTGGACTTAGAT
Found at i:80299 original size:63 final size:61
Alignment explanation
Indices: 80169--80300 Score: 149
Period size: 63 Copynumber: 2.1 Consensus size: 61
80159 TATTATATAA
** * * *
80169 TATATATTTTCAAAAATATTTAAAATTATATATTATATGTTTTTAAAAAAATGTTTTCAAAAT
1 TATATATTTTCAAAAATATTTAAAACCATATATTATAAGTTTTT--AAAAATGATTTCAAAAC
* *
80232 TATATAGTTTTCAAAAATGTTTTTAAAACCATATATTATAAGTTTTT-GAAATGATTTCAAAAC
1 TATATA-TTTTCAAAAA--TATTTAAAACCATATATTATAAGTTTTTAAAAATGATTTCAAAAC
80295 TATATA
1 TATATA
80301 ATATATATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
63 25 0.42
64 10 0.17
66 24 0.41
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.45
Consensus pattern (61 bp):
TATATATTTTCAAAAATATTTAAAACCATATATTATAAGTTTTTAAAAATGATTTCAAAAC
Found at i:80404 original size:36 final size:37
Alignment explanation
Indices: 80336--80567 Score: 190
Period size: 36 Copynumber: 6.2 Consensus size: 37
80326 TTTTAAAAAC
*
80336 TATATATATTTT-CAAAATG-TTTAAAAACTATATAA
1 TATATATATTTTAAAAAATGTTTTAAAAACTATATAA
* *
80371 TATATAT-TTTTAAAAAATGTTTTAAAAATTATATAT
1 TATATATATTTTAAAAAATGTTTTAAAAACTATATAA
* * ** *
80407 TATATTTATTTT-CAAAATACTTTCAAAACTATATAA
1 TATATATATTTTAAAAAATGTTTTAAAAACTATATAA
* * *
80443 TATATATACTTTCAAAAAT-ATTTAAAAACTATATAA
1 TATATATATTTTAAAAAATGTTTTAAAAACTATATAA
* * * * * *
80479 TATATAAATGTTTTCATACATGTTTTCAAAACTATATAT
1 TATAT--ATATTTTAAAAAATGTTTTAAAAACTATATAA
80518 TATATATAGGTTTTAAAAATAT-TTTTAAACTAA-TATATATA
1 TATATATA--TTTTAAAAA-ATGTTTTAAA--AACTATATA-A
80559 TATATATAT
1 TATATATAT
80568 ATATATATAT
Statistics
Matches: 156, Mismatches: 28, Indels: 22
0.76 0.14 0.11
Matches are distributed among these distances:
34 4 0.03
35 13 0.08
36 68 0.44
37 11 0.07
38 10 0.06
39 32 0.21
40 8 0.05
41 10 0.06
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (37 bp):
TATATATATTTTAAAAAATGTTTTAAAAACTATATAA
Found at i:80448 original size:72 final size:71
Alignment explanation
Indices: 80336--80569 Score: 236
Period size: 72 Copynumber: 3.1 Consensus size: 71
80326 TTTTAAAAAC
* *
80336 TATATATATTTTCAAAATGTTTAAAAACTATATAATATATATTTTTAAAAAATGTTTTAAAAATT
1 TATATATATTTTCAAAATCTTTCAAAACTATATAATATATATTTTTAAAAAAT-TTTTAAAAATT
80401 ATATAT-
65 ATATATA
* * * * *
80407 TATATTTATTTTCAAAATACTTTCAAAACTATATAATATATATACTTTCAAAAATATTTAAAAAC
1 TATATATATTTTCAAAAT-CTTTCAAAACTATATAATATATAT-TTTTAAAAAATTTTTAAAAAT
80472 TATATAATA
64 TATAT-ATA
* * * * *
80481 TATAAATGTTTTCATACATGTTTTCAAAACTATATATTATATATAGGTTTTAAAAATATTTTTAA
1 TATATATATTTTCA-AAAT-CTTTCAAAACTATATA--ATATATA-TTTTTAAAAA-ATTTTTAA
80546 ACTAATATATATATA
60 A--AAT-TATATATA
80561 TATATATAT
1 TATATATAT
80570 ATATATATAA
Statistics
Matches: 131, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
71 17 0.13
72 35 0.27
73 11 0.08
74 11 0.08
75 18 0.14
77 14 0.11
78 8 0.06
80 12 0.09
81 5 0.04
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (71 bp):
TATATATATTTTCAAAATCTTTCAAAACTATATAATATATATTTTTAAAAAATTTTTAAAAATTA
TATATA
Found at i:80557 original size:2 final size:2
Alignment explanation
Indices: 80550--80578 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
80540 TTTTAAACTA
80550 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80579 AATGAGACGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:81279 original size:45 final size:48
Alignment explanation
Indices: 81191--81279 Score: 123
Period size: 45 Copynumber: 1.9 Consensus size: 48
81181 ATGTTATATA
*
81191 TTAAAATGGATTGAATATTCACGTATTAGAAAGTTTATTTTGATAATT
1 TTAAAATGGATTGAATATTCACCTATTAGAAAGTTTATTTTGATAATT
*
81239 TTAAAAT-GATTGAATATT-ACCT-TTAGTCAA-TTTATTTTGAT
1 TTAAAATGGATTGAATATTCACCTATTAG-AAAGTTTATTTTGAT
81280 TCAAGTCAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
45 15 0.39
46 5 0.13
47 11 0.29
48 7 0.18
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.46
Consensus pattern (48 bp):
TTAAAATGGATTGAATATTCACCTATTAGAAAGTTTATTTTGATAATT
Found at i:83258 original size:46 final size:46
Alignment explanation
Indices: 83191--83282 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
83181 ATAAAGCATA
83191 CTAGAAATTTAAAAATAAGATGGAAAATATCTCAAATCATTACCAT
1 CTAGAAATTTAAAAATAAGATGGAAAATATCTCAAATCATTACCAT
*
83237 CTAGAAATTTAAAAATAAGATGGATAATATCTCAAATCATTACCAT
1 CTAGAAATTTAAAAATAAGATGGAAAATATCTCAAATCATTACCAT
83283 TTCTTTCTGT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.49, C:0.13, G:0.09, T:0.29
Consensus pattern (46 bp):
CTAGAAATTTAAAAATAAGATGGAAAATATCTCAAATCATTACCAT
Found at i:84234 original size:25 final size:25
Alignment explanation
Indices: 84206--84256 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
84196 ATTATAAAGT
*
84206 TAAAAATTGAAATTAAAAGATTAGG
1 TAAAAAGTGAAATTAAAAGATTAGG
84231 TAAAAAGTGAAATTAAAAGATTAGG
1 TAAAAAGTGAAATTAAAAGATTAGG
84256 T
1 T
84257 CCTTCAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.55, C:0.00, G:0.18, T:0.27
Consensus pattern (25 bp):
TAAAAAGTGAAATTAAAAGATTAGG
Found at i:84319 original size:87 final size:85
Alignment explanation
Indices: 84228--84813 Score: 452
Period size: 87 Copynumber: 6.8 Consensus size: 85
84218 TTAAAAGATT
* * * * *
84228 AGGTAAAAAGTGAAATT-AAAAGATTAGGTCCTTCAATTATAGAGGTAGAAAGTGAGATTGAAAA
1 AGGTAAAAAGTGAGATTAAAAAAATTAGG-GCTTCAATTATAAAGGTAAAAAGTGAGATT-AAAA
84292 AATATTAGGAACCT-AGATTATAA
64 AA-ATTAGGAACCTCA-ATTATAA
84315 AGGTAAAAAGTGAGATTGAAAAAAATTAAGGGCTTCAATTATAAAGGTAAAAAGTGAGATTAAAA
1 AGGTAAAAAGTGAGATT-AAAAAAATT-AGGGCTTCAATTATAAAGGTAAAAAGTGAGATTAAAA
** *
84380 AAATTAGGGGCTTCAATTATAA
64 AAATTAGGAACCTCAATTATAA
* * * * * *
84402 AGGTTAAAGGTGGGATTGAAAAACATTAGGGGCTTCAATTATAAAAGTAAAAAGTGAGATTCAAA
1 AGGTAAAAAGTGAGATT-AAAAAAATTA-GGGCTTCAATTATAAAGGTAAAAAGTGAGATTAAAA
* * * *
84467 ACATTAGG--CTTCAATTTTGA
64 AAATTAGGAACCTCAATTATAA
* * * * * * *
84487 AGGTAGAAAGTCATATTGAAAAAATTATGAGCCTCAGA-TATAAAGGTAAAAAGTGAGGTT-AAA
1 AGGTAAAAAGTGAGATTAAAAAAATTA-GGGCTTCA-ATTATAAAGGTAAAAAGTGAGATTAAAA
** * *
84550 AAATTAGGGGCTTTAATTATAA
64 AAATTAGGAACCTCAATTATAA
** * * * * * * * **
84572 ATCTAGAAAGTGAGATTGAAAAATTTTGGGGTCTCAATTTTAAATGTAAAAAAAGAGATTAAAAA
1 AGGTAAAAAGTGAGATTAAAAAAATTAGGGCT-TCAATTATAAAGGTAAAAAGTGAGATTAAAAA
* *
84637 AATTAAGG-GCTTCAATTATAA
65 AATT-AGGAACCTCAATTATAA
** * * * *
84658 AACTAGAAAGTGAGATTAAAAAAATTAGGGGCATCAATTATAAAGATAAAAAGTGAGATT--GAA
1 AGGTAAAAAGTGAGATTAAAAAAATTA-GGGCTTCAATTATAAAGGTAAAAAGTGAGATTAAAAA
** *
84721 AATTAGGGGCTTCAATTATAA
65 AATTAGGAACCTCAATTATAA
* * * * * * * *
84742 ATGTAAAAAGTGAAATTGAAAAAAATCAGGACCTCAATTATAAACGTAAAAAGTAAGATTACAAA
1 AGGTAAAAAGTGAGATT-AAAAAAATTAGGGCTTCAATTATAAAGGTAAAAAGTGAGATTAAAAA
84807 AATTAGG
65 AATTAGG
84814 GGACTCAATT
Statistics
Matches: 410, Mismatches: 72, Indels: 35
0.79 0.14 0.07
Matches are distributed among these distances:
83 13 0.03
84 96 0.23
85 81 0.20
86 75 0.18
87 101 0.25
88 7 0.02
89 34 0.08
90 3 0.01
ACGTcount: A:0.47, C:0.06, G:0.20, T:0.26
Consensus pattern (85 bp):
AGGTAAAAAGTGAGATTAAAAAAATTAGGGCTTCAATTATAAAGGTAAAAAGTGAGATTAAAAAA
ATTAGGAACCTCAATTATAA
Found at i:84394 original size:43 final size:43
Alignment explanation
Indices: 84228--84829 Score: 560
Period size: 43 Copynumber: 14.0 Consensus size: 43
84218 TTAAAAGATT
* * ** *
84228 AGGTAAAAAGTGAAATT-AAAAGATTAGGTCCTTCAATTATAG
1 AGGTAAAAAGTGAGATTAAAAAAATTAGGGGCTTCAATTATAA
* ** *
84270 AGGTAGAAAGTGAGATTGAAAAAATATTAGGAACCT-AGATTATAA
1 AGGTAAAAAGTGAGATT-AAAAAA-ATTAGGGGCTTCA-ATTATAA
*
84315 AGGTAAAAAGTGAGATTGAAAAAAATTAAGGGCTTCAATTATAA
1 AGGTAAAAAGTGAGATT-AAAAAAATTAGGGGCTTCAATTATAA
84359 AGGTAAAAAGTGAGATTAAAAAAATTAGGGGCTTCAATTATAA
1 AGGTAAAAAGTGAGATTAAAAAAATTAGGGGCTTCAATTATAA
* * * *
84402 AGGTTAAAGGTGGGATTGAAAAACATTAGGGGCTTCAATTATAA
1 AGGTAAAAAGTGAGATT-AAAAAAATTAGGGGCTTCAATTATAA
* * * * *
84446 AAGTAAAAAGTGAGATTCAAAACATTA--GGCTTCAATTTTGA
1 AGGTAAAAAGTGAGATTAAAAAAATTAGGGGCTTCAATTATAA
* * * * * * *
84487 AGGTAGAAAGTCATATTGAAAAAATTATGAGCCTCAGA-TATAA
1 AGGTAAAAAGTGAGATTAAAAAAATTAGGGGCTTCA-ATTATAA
* *
84530 AGGTAAAAAGTGAGGTT-AAAAAATTAGGGGCTTTAATTATAA
1 AGGTAAAAAGTGAGATTAAAAAAATTAGGGGCTTCAATTATAA
** * * * * *
84572 ATCTAGAAAGTGAGATTGAAAAATTTTGGGG-TCTCAATTTTAA
1 AGGTAAAAAGTGAGATTAAAAAAATTAGGGGCT-TCAATTATAA
* ** *
84615 ATGTAAAAAAAGAGATTAAAAAAATTAAGGGCTTCAATTATAA
1 AGGTAAAAAGTGAGATTAAAAAAATTAGGGGCTTCAATTATAA
** * *
84658 AACTAGAAAGTGAGATTAAAAAAATTAGGGGCATCAATTATAA
1 AGGTAAAAAGTGAGATTAAAAAAATTAGGGGCTTCAATTATAA
* *
84701 AGATAAAAAGTGAGATT--GAAAATTAGGGGCTTCAATTATAA
1 AGGTAAAAAGTGAGATTAAAAAAATTAGGGGCTTCAATTATAA
* * * * *
84742 ATGTAAAAAGTGAAATTGAAAAAAATCA-GGACCTCAATTATAA
1 AGGTAAAAAGTGAGATT-AAAAAAATTAGGGGCTTCAATTATAA
* * * *
84785 ACGTAAAAAGTAAGATTACAAAAATTAGGGGAC-TCAATTTTAA
1 AGGTAAAAAGTGAGATTAAAAAAATTAGGGG-CTTCAATTATAA
84828 AG
1 AG
84830 AGAAAAAAAT
Statistics
Matches: 456, Mismatches: 86, Indels: 35
0.79 0.15 0.06
Matches are distributed among these distances:
41 70 0.15
42 56 0.12
43 209 0.46
44 83 0.18
45 38 0.08
ACGTcount: A:0.47, C:0.06, G:0.20, T:0.27
Consensus pattern (43 bp):
AGGTAAAAAGTGAGATTAAAAAAATTAGGGGCTTCAATTATAA
Found at i:84609 original size:128 final size:128
Alignment explanation
Indices: 84228--84828 Score: 549
Period size: 128 Copynumber: 4.7 Consensus size: 128
84218 TTAAAAGATT
* * * * *
84228 AGGTAAAAAGTGAAATT-AAAAGATTAGG-TCCTTCAATTATAGAGGTAGAAAGTGAGATTGAAA
1 AGGTAAAAAGTGAGATTAAAAAAATTAGGAGCC-TCAATTATAAAGGTAAAAAGTGAGATT-AAA
** * **
84291 AAATATTAGGAACCT-AGATTATAAAGGTAAAAAGTGAGATTGAAAAAAATTAAGGGCTTCAATT
64 AAA-ATTAGGGGCTTCA-ATTATAAAAATAAAAAGTGAGATTG--AAAAATTAAGGGCTTCAATT
84355 ATAA
125 ATAA
* * * * *
84359 AGGTAAAAAGTGAGATTAAAAAAATTAGGGGCTTCAATTATAAAGGTTAAAGGTGGGATTGAAAA
1 AGGTAAAAAGTGAGATTAAAAAAATTAGGAGCCTCAATTATAAAGGTAAAAAGTGAGATT-AAAA
* * * * *
84424 ACATTAGGGGCTTCAATTATAAAAGTAAAAAGTGAGATTCAAAACATT-A-GGCTTCAATTTTGA
65 AAATTAGGGGCTTCAATTATAAAAATAAAAAGTGAGATTGAAAA-ATTAAGGGCTTCAATTATAA
* * * * * *
84487 AGGTAGAAAGTCATATTGAAAAAATTATGAGCCTCAGA-TATAAAGGTAAAAAGTGAGGTT-AAA
1 AGGTAAAAAGTGAGATTAAAAAAATTAGGAGCCTCA-ATTATAAAGGTAAAAAGTGAGATTAAAA
* ** * ** * *
84550 AAATTAGGGGCTTTAATTATAAATCTAGAAAGTGAGATTGAAAAATTTTGGGGTCTCAATTTTAA
65 AAATTAGGGGCTTCAATTATAAAAATAAAAAGTGAGATTGAAAAATTAAGGGCT-TCAATTATAA
* ** * ** *
84615 ATGTAAAAAAAGAGATTAAAAAAATTAAGG-GCTTCAATTATAAAACTAGAAAGTGAGATTAAAA
1 AGGTAAAAAGTGAGATTAAAAAAATT-AGGAGCCTCAATTATAAAGGTAAAAAGTGAGATTAAAA
* * *
84679 AAATTAGGGGCATCAATTATAAAGATAAAAAGTGAGATTG-AAAATTAGGGGCTTCAATTATAA
65 AAATTAGGGGCTTCAATTATAAAAATAAAAAGTGAGATTGAAAAATTAAGGGCTTCAATTATAA
* * * * * *
84742 ATGTAAAAAGTGAAATTGAAAAAAATCAGGA-CCTCAATTATAAACGTAAAAAGTAAGATTACAA
1 AGGTAAAAAGTGAGATT-AAAAAAATTAGGAGCCTCAATTATAAAGGTAAAAAGTGAGATTAAAA
*
84806 AAATTAGGGGAC-TCAATTTTAAA
65 AAATTAGGGG-CTTCAATTATAAA
84829 GAGAAAAAAA
Statistics
Matches: 386, Mismatches: 70, Indels: 32
0.79 0.14 0.07
Matches are distributed among these distances:
125 3 0.01
126 41 0.11
127 77 0.20
128 129 0.33
129 46 0.12
130 3 0.01
131 47 0.12
132 39 0.10
133 1 0.00
ACGTcount: A:0.47, C:0.06, G:0.20, T:0.27
Consensus pattern (128 bp):
AGGTAAAAAGTGAGATTAAAAAAATTAGGAGCCTCAATTATAAAGGTAAAAAGTGAGATTAAAAA
AATTAGGGGCTTCAATTATAAAAATAAAAAGTGAGATTGAAAAATTAAGGGCTTCAATTATAA
Found at i:84780 original size:170 final size:171
Alignment explanation
Indices: 84321--84828 Score: 551
Period size: 170 Copynumber: 3.0 Consensus size: 171
84311 ATAAAGGTAA
*
84321 AAAGTGAGATTGAAAAAAATTAAGGGCTTCAATTATAAAGGTAAAAAGTGAGATTAAAAAAATTA
1 AAAGTGAGATT-AAAAAAATTAAGGGCATCAATTATAAAGGTAAAAAGTGAGATT-AAAAAATTA
* * * * * *
84386 GGGGCTTCAATTATAAAGGTTAAAGGTGGGATTGAAAAACATTAGGGGCTTCAATTATAAAAGTA
64 GGGGCTTCAATTATAAATGTAAAAAGTGAGATTGAAAAAAATTA-GGGCCTCAATTATAAAAGTA
** * * * **
84451 AAAAGTGAGATTCAAAACATT-A-GGCTTCAATTTTGAAGGTAG
128 AAAAAAGAGATTAAAAAAATTAAGGGCTTCAATTTTAAAACTAG
* * * * * * *
84493 AAAGTCATATTGAAAAAATTATGAGCCTCAGA-TATAAAGGTAAAAAGTGAGGTTAAAAAATTAG
1 AAAGTGAGATTAAAAAAATTAAGGGCATCA-ATTATAAAGGTAAAAAGTGAGATTAAAAAATTAG
* * * ** * * * *
84557 GGGCTTTAATTATAAATCTAGAAAGTGAGATTGAAAAATTTTGGGGTCTCAATTTTAAATGTAAA
65 GGGCTTCAATTATAAATGTAAAAAGTGAGATTGAAAAAAATTAGGGCCTCAATTATAAAAGTAAA
*
84622 AAAAGAGATTAAAAAAATTAAGGGCTTCAATTATAAAACTAG
130 AAAAGAGATTAAAAAAATTAAGGGCTTCAATTTTAAAACTAG
* * *
84664 AAAGTGAGATTAAAAAAATTAGGGGCATCAATTATAAAGATAAAAAGTGAGATT-GAAAATTAGG
1 AAAGTGAGATTAAAAAAATTAAGGGCATCAATTATAAAGGTAAAAAGTGAGATTAAAAAATTAGG
* * * *
84728 GGCTTCAATTATAAATGTAAAAAGTGAAATTGAAAAAAATCAGGACCTCAATTATAAACGTAAAA
66 GGCTTCAATTATAAATGTAAAAAGTGAGATTGAAAAAAATTAGGGCCTCAATTATAAAAGTAAAA
* * *
84793 AGTA-AGATTACAAAAATTAGGGGAC-TCAATTTTAAA
131 A-AAGAGATTAAAAAAATTAAGGG-CTTCAATTTTAAA
84829 GAGAAAAAAA
Statistics
Matches: 276, Mismatches: 54, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
169 33 0.12
170 135 0.49
171 98 0.36
172 10 0.04
ACGTcount: A:0.47, C:0.07, G:0.19, T:0.27
Consensus pattern (171 bp):
AAAGTGAGATTAAAAAAATTAAGGGCATCAATTATAAAGGTAAAAAGTGAGATTAAAAAATTAGG
GGCTTCAATTATAAATGTAAAAAGTGAGATTGAAAAAAATTAGGGCCTCAATTATAAAAGTAAAA
AAAGAGATTAAAAAAATTAAGGGCTTCAATTTTAAAACTAG
Found at i:84850 original size:86 final size:84
Alignment explanation
Indices: 84634--84894 Score: 224
Period size: 84 Copynumber: 3.1 Consensus size: 84
84624 AAGAGATTAA
* ** * * * * * *
84634 AAAAATTAAGGGCTTCAATTATAAAACTAGAAAGTGAGATTAAAAAAATTAGGGGCATCAATTAT
1 AAAAATTAGGGGCTTCAATTATAAAAGAAAAAAATAAAATTAAAAAAATCAGGGACATCAATTAT
*
84699 AAAGATAAAAAGTGAGATT
66 AAAGATAAAAAGTAAGATT
* * * * * *
84718 GAAAATTAGGGGCTTCAATTATAAATGTAAAAAGTGAAATTGAAAAAAATCA-GGACCTCAATTA
1 AAAAATTAGGGGCTTCAATTATAAAAGAAAAAAATAAAATT-AAAAAAATCAGGGACATCAATTA
84782 TAAACG-TAAAAAGTAAGATT
65 TAAA-GATAAAAAGTAAGATT
* * * * *
84802 ACAAAAATTAGGGGAC-TCAATTTTAAAGAGAAAAAAATAAAATTAAAAAAGTTAAGGACAACAA
1 --AAAAATTAGGGG-CTTCAATTATAAA-AGAAAAAAATAAAATTAAAAAAATCAGGGACATCAA
* *
84866 TTATAAA-AAAAAAAGTATGATT
62 TTATAAAGATAAAAAGTAAGATT
84888 GAAAAAT
1 -AAAAAT
84895 AAAGGACCCT
Statistics
Matches: 146, Mismatches: 23, Indels: 15
0.79 0.12 0.08
Matches are distributed among these distances:
84 62 0.42
85 16 0.11
86 41 0.28
87 27 0.18
ACGTcount: A:0.54, C:0.07, G:0.16, T:0.24
Consensus pattern (84 bp):
AAAAATTAGGGGCTTCAATTATAAAAGAAAAAAATAAAATTAAAAAAATCAGGGACATCAATTAT
AAAGATAAAAAGTAAGATT
Found at i:84881 original size:170 final size:170
Alignment explanation
Indices: 84333--84892 Score: 389
Period size: 170 Copynumber: 3.3 Consensus size: 170
84323 AGTGAGATTG
* ** ** *
84333 AAAAAAATTAAGGGCTTCAATTATAAAGGTAAAAAGTGAGATTAAAAAAATTAGGGGCTTCAATT
1 AAAAAAATTAAGGACAACAATTATAAAGAAAAAAAGTGAGATT--GAAAATTAGGGGCTTCAATT
** * * ** * * * * * **
84398 ATAAAGGTTAAAGGTGGGATTGAAAAACATTAGGGGCTTCAATTATAAAAGTAAAAAGTGAGATT
64 ATAAATCTAAAAAGTGAAATTGAAAAAAATCA-GGACCTCAATTATAAACGTAAAAAAAGAGATT
* * * * *** * * * *
84463 CAAAACATT-A-GGCTTCAATTTTGAAGGTAGAAAGTCATATT
128 AAAAAAATTAAGGGCTTCAATTATAAAACAAAAAAATAAAATT
* * ** ** * * *
84504 GAAAAAATT-ATGAGCCTCAGA-TATAAAGGTAAAAAGTGAGGTTAAAAAATTAGGGGCTTTAAT
1 AAAAAAATTAAGGA-CAACA-ATTATAAAGAAAAAAAGTGAGATT-GAAAATTAGGGGCTTCAAT
* * ** ** ** * *
84567 TATAAATCTAGAAAGTGAGATTGAAAAATTTTGGGGTCTCAATTTTAAATGTAAAAAAAGAGATT
63 TATAAATCTAAAAAGTGAAATTGAAAAAAATCAGGACCTCAATTATAAACGTAAAAAAAGAGATT
* * * * *
84632 AAAAAAATTAAGGGCTTCAATTATAAAACTAGAAAGTGAGATT
128 AAAAAAATTAAGGGCTTCAATTATAAAACAAAAAAATAAAATT
* * * *
84675 AAAAAAATTAGGGGCATCAATTATAAAGATAAAAAGTGAGATTGAAAATTAGGGGCTTCAATTAT
1 AAAAAAATTAAGGACAACAATTATAAAGAAAAAAAGTGAGATTGAAAATTAGGGGCTTCAATTAT
* * *
84740 AAATGTAAAAAGTGAAATTGAAAAAAATCAGGACCTCAATTATAAACGTAAAAAGTA-AGATTAC
66 AAATCTAAAAAGTGAAATTGAAAAAAATCAGGACCTCAATTATAAACGTAAAAA-AAGAGATTAA
* * *
84804 AAAAATTAGGGGAC-TCAATTTTAAAGAGAAAAAAATAAAATT
130 AAAAATTAAGGG-CTTCAATTATAAA-ACAAAAAAATAAAATT
*
84846 AAAAAAGTTAAGGACAACAATTATAAA-AAAAAAAGT-ATGATTGAAAA
1 AAAAAAATTAAGGACAACAATTATAAAGAAAAAAAGTGA-GATTGAAAA
84893 ATAAAGGACC
Statistics
Matches: 315, Mismatches: 64, Indels: 21
0.79 0.16 0.05
Matches are distributed among these distances:
169 34 0.11
170 154 0.49
171 125 0.40
172 2 0.01
ACGTcount: A:0.49, C:0.06, G:0.18, T:0.26
Consensus pattern (170 bp):
AAAAAAATTAAGGACAACAATTATAAAGAAAAAAAGTGAGATTGAAAATTAGGGGCTTCAATTAT
AAATCTAAAAAGTGAAATTGAAAAAAATCAGGACCTCAATTATAAACGTAAAAAAAGAGATTAAA
AAAATTAAGGGCTTCAATTATAAAACAAAAAAATAAAATT
Found at i:85749 original size:15 final size:16
Alignment explanation
Indices: 85712--85749 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
85702 ATTATGAAAA
85712 TATTTAAAAATATTTAT
1 TATTT-AAAATATTTAT
*
85729 TTTTTAAAATA-TTAT
1 TATTTAAAATATTTAT
85744 TATTTA
1 TATTTA
85750 TTTATTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 9 0.47
16 6 0.32
17 4 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TATTTAAAATATTTAT
Found at i:85751 original size:26 final size:23
Alignment explanation
Indices: 85722--85771 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
85712 TATTTAAAAA
*
85722 TATTTATTT-TTTAAAATATTAT
1 TATTTATTTATTTAAAATAATAT
85744 TATTTATTTATTTAAAATAATAT
1 TATTTATTTATTTAAAATAATAT
85767 TATTT
1 TATTT
85772 CTAAACTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
TATTTATTTATTTAAAATAATAT
Found at i:97844 original size:2 final size:2
Alignment explanation
Indices: 97825--97871 Score: 51
Period size: 2 Copynumber: 24.0 Consensus size: 2
97815 TACGATAAAC
* * * *
97825 AT AT AC AT AT AA AT AT AT AT AT AT A- AT AA AT AT AT AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97866 AT AT AT
1 AT AT AT
97872 CAGAAAACTG
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (2 bp):
AT
Found at i:105866 original size:11 final size:11
Alignment explanation
Indices: 105850--105920 Score: 62
Period size: 11 Copynumber: 6.8 Consensus size: 11
105840 CAATAGCAAC
105850 AAGAAAAAAAA
1 AAGAAAAAAAA
105861 AAG-AAAAAAA
1 AAGAAAAAAAA
* *
105871 AATAAAAAGAA
1 AAGAAAAAAAA
*
105882 AAG---AGAAA
1 AAGAAAAAAAA
*
105890 AAG-GAAAAAA
1 AAGAAAAAAAA
105900 AAGAAAAAAAA
1 AAGAAAAAAAA
105911 AAGCAAAAAA
1 AAG-AAAAAA
105921 GGATGGGAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
8 6 0.12
10 16 0.33
11 20 0.42
12 6 0.12
ACGTcount: A:0.85, C:0.01, G:0.13, T:0.01
Consensus pattern (11 bp):
AAGAAAAAAAA
Found at i:105867 original size:9 final size:9
Alignment explanation
Indices: 105855--105910 Score: 58
Period size: 9 Copynumber: 5.9 Consensus size: 9
105845 GCAACAAGAA
105855 AAAAAAAAG
1 AAAAAAAAG
*
105864 AAAAAAAAATA
1 -AAAAAAAA-G
105875 AAAAGAAAAG
1 AAAA-AAAAG
* *
105885 AGAAAAAGG
1 AAAAAAAAG
105894 AAAAAAAAG
1 AAAAAAAAG
105903 AAAAAAAA
1 AAAAAAAA
105911 AAGCAAAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
9 19 0.50
10 15 0.39
11 4 0.11
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:105869 original size:10 final size:10
Alignment explanation
Indices: 105854--105911 Score: 66
Period size: 10 Copynumber: 5.9 Consensus size: 10
105844 AGCAACAAGA
105854 AAAAAAAAAG
1 AAAAAAAAAG
*
105864 AAAAAAAAAT
1 AAAAAAAAAG
105874 AAAAAGAAAAG
1 AAAAA-AAAAG
*
105885 --AGAAAAAG
1 AAAAAAAAAG
*
105893 GAAAAAAAAG
1 AAAAAAAAAG
105903 AAAAAAAAA
1 AAAAAAAAA
105912 AGCAAAAAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
8 5 0.12
9 2 0.05
10 29 0.73
11 4 0.10
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:105877 original size:16 final size:15
Alignment explanation
Indices: 105853--105920 Score: 66
Period size: 16 Copynumber: 4.1 Consensus size: 15
105843 TAGCAACAAG
105853 AAAAAAAAAAGAAAA
1 AAAAAAAAAAGAAAA
105868 AAAAATAAAAAGAAAA
1 AAAAA-AAAAAGAAAA
105884 GAGAAAAAGGAAAA-AAAA
1 -A-AAAAA--AAAAGAAAA
105902 GAAAAAAAAAAGCAAAA
1 -AAAAAAAAAAG-AAAA
105919 AA
1 AA
105921 GGATGGGAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
15 9 0.20
16 12 0.26
17 11 0.24
18 10 0.22
19 4 0.09
ACGTcount: A:0.85, C:0.01, G:0.12, T:0.01
Consensus pattern (15 bp):
AAAAAAAAAAGAAAA
Found at i:105888 original size:23 final size:22
Alignment explanation
Indices: 105853--105920 Score: 79
Period size: 21 Copynumber: 3.1 Consensus size: 22
105843 TAGCAACAAG
105853 AAAAA-AAAAAGAAAAA-AAAA
1 AAAAAGAAAAAGAAAAAGAAAA
*
105873 TAAAAAGAAAAGAGAAAAAGGAAA
1 -AAAAAGAAAA-AGAAAAAGAAAA
*
105897 AAAAAGAAAAA-AAAAAGCAAA
1 AAAAAGAAAAAGAAAAAGAAAA
105918 AAA
1 AAA
105921 GGATGGGAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
21 17 0.40
22 5 0.12
23 17 0.40
24 3 0.07
ACGTcount: A:0.85, C:0.01, G:0.12, T:0.01
Consensus pattern (22 bp):
AAAAAGAAAAAGAAAAAGAAAA
Found at i:105922 original size:29 final size:28
Alignment explanation
Indices: 105853--105923 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 28
105843 TAGCAACAAG
* * *
105853 AAAA-AAAAAAGAAAAAAAAATAAAAAG
1 AAAAGAAAAAAGGAAAAAAAAGAAAAAA
105880 AAAAGAGAAAAAGGAAAAAAAAGAAAAAA
1 AAAAGA-AAAAAGGAAAAAAAAGAAAAAA
105909 AAAAGCAAAAAAGGA
1 AAAAG-AAAAAAGGA
105924 TGGGAATCGA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 4 0.11
28 1 0.03
29 32 0.84
30 1 0.03
ACGTcount: A:0.83, C:0.01, G:0.14, T:0.01
Consensus pattern (28 bp):
AAAAGAAAAAAGGAAAAAAAAGAAAAAA
Found at i:107538 original size:36 final size:39
Alignment explanation
Indices: 107458--107549 Score: 111
Period size: 36 Copynumber: 2.4 Consensus size: 39
107448 TTCACTACAT
*
107458 GTTTCCCTCGAAACAGAAGATTTTGTCTCTCTCTTGAGATA
1 GTTTCCCTTGAAAC--AAGATTTTGTCTCTCTCTTGAGATA
107499 GTTTCCCTTGAAACAA-ATTTTGTCTC-C-CTTGAG-TCA
1 GTTTCCCTTGAAACAAGATTTTGTCTCTCTCTTGAGAT-A
*
107535 GTTTCTCTTGAAACA
1 GTTTCCCTTGAAACA
107550 TAAACTTTGA
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
35 1 0.02
36 21 0.44
37 1 0.02
38 10 0.21
39 2 0.04
41 13 0.27
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (39 bp):
GTTTCCCTTGAAACAAGATTTTGTCTCTCTCTTGAGATA
Found at i:107602 original size:63 final size:63
Alignment explanation
Indices: 107495--107616 Score: 183
Period size: 63 Copynumber: 1.9 Consensus size: 63
107485 TCTCTCTTGA
107495 GATAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGTCAGTTTCTCTTGAAACATAAACTTT
1 GATAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGTCAGTTTCTCTTGAAACATAAACTTT
* ** * *
107558 GATAGTTTCCCTTGGAATGAATTTTTTCTCCCTTGA-TACGGTTTCTCTTGAAACATAAA
1 GATAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGT-CAGTTTCTCTTGAAACATAAA
107617 AACTTTGAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
62 1 0.02
63 52 0.98
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (63 bp):
GATAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGTCAGTTTCTCTTGAAACATAAACTTT
Found at i:107650 original size:21 final size:21
Alignment explanation
Indices: 107621--107703 Score: 79
Period size: 21 Copynumber: 4.2 Consensus size: 21
107611 CATAAAAACT
*
107621 TTGAAACAAGTTTTGTCTCCC
1 TTGAAACAAATTTTGTCTCCC
*
107642 TTGAGAC-AA---T-T-TCCC
1 TTGAAACAAATTTTGTCTCCC
107657 TTGAAACAAATTTTGTCTCCC
1 TTGAAACAAATTTTGTCTCCC
* *
107678 TTGAAACAAAATTTCGTCTCGC
1 TTGAAAC-AAATTTTGTCTCCC
107700 TTGA
1 TTGA
107704 GACAGTTTCC
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
15 10 0.20
16 3 0.06
17 1 0.02
19 1 0.02
20 2 0.04
21 17 0.34
22 16 0.32
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (21 bp):
TTGAAACAAATTTTGTCTCCC
Found at i:107696 original size:22 final size:21
Alignment explanation
Indices: 107653--107703 Score: 75
Period size: 22 Copynumber: 2.4 Consensus size: 21
107643 TGAGACAATT
*
107653 TCCCTTGAAACAAATTTTGTC
1 TCCCTTGAAACAAATTTCGTC
107674 TCCCTTGAAACAAAATTTCGTC
1 TCCCTTGAAAC-AAATTTCGTC
*
107696 TCGCTTGA
1 TCCCTTGA
107704 GACAGTTTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 11 0.41
22 16 0.59
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.35
Consensus pattern (21 bp):
TCCCTTGAAACAAATTTCGTC
Found at i:108300 original size:44 final size:44
Alignment explanation
Indices: 108220--108434 Score: 114
Period size: 44 Copynumber: 4.9 Consensus size: 44
108210 GACAATTTTA
* * * * *
108220 TTTTTGCTCAAATCCATCGCAGAAGGAG-TTGAATCAGCGTCAAC
1 TTTTTGCTCGATTCTATCACAGAAGGAGATAG-ATCAGCGTCAAC
* * **
108264 TTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCACCAAC
1 TTTTTGCTCGATTCTATCACAGAAGGAGATAGATCAGCGTCAAC
* * * * * * **
108308 ATCTTGTTCGATTAC-ATCACAGAAGGATATGGATC-GACATTTTTA-
1 TTTTTGCTCGATT-CTATCACAGAAGGAGATAGATCAG-C--GTCAAC
* * * * * * *
108353 TTTTTTCTCAAATCCATCGCAGAAGGAGCTGGATCAGCGTCAAC
1 TTTTTGCTCGATTCTATCACAGAAGGAGATAGATCAGCGTCAAC
* * *
108397 TTTTAGCTTGATTCTATCACAGAATGAGATAGATCAGC
1 TTTTTGCTCGATTCTATCACAGAAGGAGATAGATCAGC
108435 ACCAACATCT
Statistics
Matches: 122, Mismatches: 41, Indels: 16
0.68 0.23 0.09
Matches are distributed among these distances:
43 3 0.02
44 89 0.73
45 28 0.23
46 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (44 bp):
TTTTTGCTCGATTCTATCACAGAAGGAGATAGATCAGCGTCAAC
Found at i:108430 original size:133 final size:133
Alignment explanation
Indices: 108189--108444 Score: 431
Period size: 133 Copynumber: 1.9 Consensus size: 133
108179 GGTTCAAATC
* *
108189 CATCACAGAAGGAGGTGGATCGACAATTTTATTTTTGCTCAAATCCATCGCAGAAGGAGTTGAAT
1 CATCACAGAAGGAGATGGATCGACAATTTTATTTTTGCTCAAATCCATCGCAGAAGGAGCTGAAT
* *
108254 CAGCGTCAACTTTTTGCTCGATTCTATCACAGAATGAGGTAGATCAGCACCAACATCTTGTTCGA
66 CAGCGTCAACTTTTAGCTCGATTCTATCACAGAATGAGATAGATCAGCACCAACATCTTGTTCGA
108319 TTA
131 TTA
* * * *
108322 CATCACAGAAGGATATGGATCGACATTTTTATTTTTTCTCAAATCCATCGCAGAAGGAGCTGGAT
1 CATCACAGAAGGAGATGGATCGACAATTTTATTTTTGCTCAAATCCATCGCAGAAGGAGCTGAAT
*
108387 CAGCGTCAACTTTTAGCTTGATTCTATCACAGAATGAGATAGATCAGCACCAACATCT
66 CAGCGTCAACTTTTAGCTCGATTCTATCACAGAATGAGATAGATCAGCACCAACATCT
108445 CGTGGATCGA
Statistics
Matches: 114, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
133 114 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (133 bp):
CATCACAGAAGGAGATGGATCGACAATTTTATTTTTGCTCAAATCCATCGCAGAAGGAGCTGAAT
CAGCGTCAACTTTTAGCTCGATTCTATCACAGAATGAGATAGATCAGCACCAACATCTTGTTCGA
TTA
Found at i:108526 original size:107 final size:107
Alignment explanation
Indices: 108359--108551 Score: 289
Period size: 107 Copynumber: 1.8 Consensus size: 107
108349 TTTATTTTTT
* * * *
108359 CTCAAATCCATCGCAGAAGGAGCTGGATCAGCGTCAACTTTTAGCTTGATTCTATCACAGAATGA
1 CTCAAATCCATCGCAGAAGGAGCTGGATCAACGTCAACTTTTAGCTCGATTATATCACAGAAGGA
108424 GATAGATCAGCACCAACATCTCGTGGATCGACATTTTTTTCA
66 GATAGATCAGCACCAACATCTCGTGGATCGACATTTTTTTCA
* * *
108466 CTCAAATCCATCGCAGAAGGGGTTGGATCAATGTCAACTTTTTA-CTCGATTATATCACAGAAGG
1 CTCAAATCCATCGCAGAAGGAGCTGGATCAACGTCAAC-TTTTAGCTCGATTATATCACAGAAGG
* *
108530 AGGTAGATCAGCACCAATATCT
65 AGATAGATCAGCACCAACATCT
108552 TGTTCGATTA
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
107 71 0.93
108 5 0.07
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (107 bp):
CTCAAATCCATCGCAGAAGGAGCTGGATCAACGTCAACTTTTAGCTCGATTATATCACAGAAGGA
GATAGATCAGCACCAACATCTCGTGGATCGACATTTTTTTCA
Found at i:108652 original size:240 final size:243
Alignment explanation
Indices: 108203--108948 Score: 795
Period size: 240 Copynumber: 3.0 Consensus size: 243
108193 ACAGAAGGAG
** *
108203 GTGGATCGACAATTTTATTTTTGCTCAAATCCATCGCAGAAGGAGTTGAATCAGCGTCAACTTTT
1 GTGGATCGACAATTTTATTTTCACTCAAATCCATCGCAGAAGGAGTTGAATCAACGTCAACTTTT
* * *
108268 TGCTCGATTCTATCACAGAATGAGGTAGATCAGCACCAACATCTTGTTCGATTACATCACAGAAG
66 TACTCGATTATATCACAGAAGGAGGTAGATCAGCACCAACATCTTGTTCGATTACATCACAGAAG
* **
108333 GATATGGATCGACATTTTTATTTTTTCTCAAATCCATCGCAGAAGGAGCTGGATCAGCGTCAACT
131 GAGATGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGCTGGATCAGCGTCAACT
* *
108398 TTTAGCTTGATTCTATCACAGAATGAGATAGATCAGCACCAACATCTC
196 TTTAGCTCGATTCTATCACAGAAGGAGATAGATCAGCACCAACATCTC
* * *
108446 GTGGATCGAC-A-TTT-TTTTCACTCAAATCCATCGCAGAAGGGGTTGGATCAATGTCAACTTTT
1 GTGGATCGACAATTTTATTTTCACTCAAATCCATCGCAGAAGGAGTTGAATCAACGTCAACTTTT
* *
108508 TACTCGATTATATCACAGAAGGAGGTAGATCAGCACCAATATCTTGTTCGATTACATCACAGAAT
66 TACTCGATTATATCACAGAAGGAGGTAGATCAGCACCAACATCTTGTTCGATTACATCACAGAAG
* * *
108573 GAGGTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAATGAGTTGGATCAGCGTCAACT
131 GAGATGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGCTGGATCAGCGTCAACT
* * *
108638 TTTAGCTCGATTCTATCATAGAAGGAGGTAGATCAGCACCAACATCTTT
196 TTTAGCTCGATTCTATCACAGAAGGAGATAGATCAGCACCAACATC-TC
* * * * * *
108687 TTTGATTACATCACAGATAGAGATGAATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGG
1 GTGGA-T-C--GACA-AT-----T---T---TATTTTCA----C-T-CAAATCCATCGCAGAAGG
* * * * * *
108752 AGTTGGATCAGCGTCAAC-TTTTAGCTAGATTCTATCACAGAAGGAGGTAGATCAACACCAATAT
44 AGTTGAATCAACGTCAACTTTTTA-CTCGATTATATCACAGAAGGAGGTAGATCAGCACCAACAT
* * * * * * * *
108816 CTCGTTCAAATCCATCACAAAAGGAGGTGGATCAACA-TTTT-TTTTCGCTCAAATCCATCGTAG
108 CTTGTTCGATTACATCACAGAAGGAGATGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAG
* * * * *
108879 AAGGAGTTGGATTAGCGTCAACTTTTTGTTTGATTCTATCACAGAAGGATG-TAGATCAGCACCA
173 AAGGAGCTGGATCAGCGTCAACTTTTAGCTCGATTCTATCACAGAAGGA-GATAGATCAGCACCA
108943 ACATCT
237 ACATCT
108949 TGTTTGATTA
Statistics
Matches: 427, Mismatches: 48, Indels: 36
0.84 0.09 0.07
Matches are distributed among these distances:
240 203 0.48
241 7 0.02
242 2 0.00
243 11 0.03
245 2 0.00
247 1 0.00
253 1 0.00
256 1 0.00
260 5 0.01
263 1 0.00
264 83 0.19
265 10 0.02
266 100 0.23
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30
Consensus pattern (243 bp):
GTGGATCGACAATTTTATTTTCACTCAAATCCATCGCAGAAGGAGTTGAATCAACGTCAACTTTT
TACTCGATTATATCACAGAAGGAGGTAGATCAGCACCAACATCTTGTTCGATTACATCACAGAAG
GAGATGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGCTGGATCAGCGTCAACT
TTTAGCTCGATTCTATCACAGAAGGAGATAGATCAGCACCAACATCTC
Found at i:108698 original size:133 final size:133
Alignment explanation
Indices: 108446--109298 Score: 1024
Period size: 133 Copynumber: 6.4 Consensus size: 133
108436 CCAACATCTC
* * **
108446 GTGGATCGACA--TTT-TTTTCACTCAAATCCATCGCAGAAGGGGTTGGATCAATGTCAACTTTT
1 GTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAAC-TTT
* *
108508 TA-CTCGATTATATCACAGAAGGAGGTAGATCAGCACCAATATCTTGTTCGATTACATCACAGAA
65 TAGCTCGATTCTATCACAGAAGGAGGTAGATCAGCACCAACATCTTGTTCGATTACATCACAGAA
*
108572 TGAG
130 GGAG
*
108576 GTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAATGAGTTGGATCAGCGTCAACTTTT
1 GTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTT
* * *
108641 AGCTCGATTCTATCATAGAAGGAGGTAGATCAGCACCAACATCTTTTTTGATTACATCACAGATA
66 AGCTCGATTCTATCACAGAAGGAGGTAGATCAGCACCAACATCTTGTTCGATTACATCACAGA-A
108706 -GAG
130 GGAG
* *
108709 ATGAATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTT
1 GTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTT
* * * * * * * *
108774 AGCTAGATTCTATCACAGAAGGAGGTAGATCAACACCAATATCTCGTTCAAATCCATCACAAAAG
66 AGCTCGATTCTATCACAGAAGGAGGTAGATCAGCACCAACATCTTGTTCGATTACATCACAGAAG
108839 GAG
131 GAG
* * *
108842 GTGGATCAACA-TTTT-TTTTCGCTCAAATCCATCGTAGAAGGAGTTGGATTAGCGTCAACTTTT
1 GTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTT
* * * * *
108905 TGTTTGATTCTATCACAGAAGGATGTAGATCAGCACCAACATCTTGTTTGATTACATCACAGAAG
66 AGCTCGATTCTATCACAGAAGGAGGTAGATCAGCACCAACATCTTGTTCGATTACATCACAGAAG
108970 GAG
131 GAG
* * * *
108973 GTGGATCGACATTTTTATTTTTGCTCAAATCTATCGCAGAGGGAGTTGGATCAACGTCAACTTTT
1 GTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTT
* * * * * *
109038 TGCTTGATTCTATCACAGAAGGAGGTAGATCAACACCAACATCTCGTTCGATTCCATTACAGAAG
66 AGCTCGATTCTATCACAGAAGGAGGTAGATCAGCACCAACATCTTGTTCGATTACATCACAGAAG
109103 GAG
131 GAG
* * * * *
109106 ATGGATCGATATTTTTA-TTTCGCTCAAATCCATCGCAGAAGGAGTCGGATCAGCATCAAATTTT
1 GTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTT
* * * * * * * *
109170 TGCTCGATTCTATCATCAAAAGGAGAAGGAGATAGATCATCATCGATATCTTGTTTGATTTCATC
66 AGCTCGATTCTATCA-C------AGAAGGAGGTAGATCAGCACCAACATCTTGTTCGATTACATC
109235 ACAGAAGGAG
124 ACAGAAGGAG
** * * * *
109245 GTGGATCGATGTTTTCA-TTTCACTCAAATCCATCACATG-CGGAGTTGGATCAGC
1 GTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCA-GAAGGAGTTGGATCAGC
109299 ATCATCAACA
Statistics
Matches: 626, Mismatches: 81, Indels: 23
0.86 0.11 0.03
Matches are distributed among these distances:
130 11 0.02
131 112 0.18
132 71 0.11
133 342 0.55
134 1 0.00
139 88 0.14
140 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (133 bp):
GTGGATCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATCAGCGTCAACTTTT
AGCTCGATTCTATCACAGAAGGAGGTAGATCAGCACCAACATCTTGTTCGATTACATCACAGAAG
GAG
Found at i:109069 original size:44 final size:44
Alignment explanation
Indices: 108745--109112 Score: 165
Period size: 44 Copynumber: 8.4 Consensus size: 44
108735 AAATCCATCG
* * * * *
108745 CAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTAGATTCTATCA
1 CAGAAGGAGGTGGATCAACATCAACTTTTTGCTTGATTCTATCA
* * * * * * *
108789 CAGAAGGAGGTAGATCAACACCAA-TATCT-CGTTCAAATCCATCA
1 CAGAAGGAGGTGGATCAACATCAACTTTTTGC-TT-GATTCTATCA
* ** ** * * *
108833 CAAAAGGAGGTGGATCAACAT--TTTTTTTCGCTCAAATCCATCG
1 CAGAAGGAGGTGGATCAACATCAACTTTTT-GCTTGATTCTATCA
* * * * * *
108876 TAGAAGGAGTTGGATTAGCGTCAACTTTTTGTTTGATTCTATCA
1 CAGAAGGAGGTGGATCAACATCAACTTTTTGCTTGATTCTATCA
* * * * * * *
108920 CAGAAGGATGTAGATCAGCACCAACATCTTGTTTGATTAC-ATCA
1 CAGAAGGAGGTGGATCAACATCAACTTTTTGCTTGATT-CTATCA
* ** ** * *
108964 CAGAAGGAGGTGGATCGACATTTTTA-TTTTTGCTCAAATCTATCG
1 CAGAAGGAGGTGGATCAACA--TCAACTTTTTGCTTGATTCTATCA
* * *
109009 CAGAGGGAGTTGGATCAACGTCAACTTTTTGCTTGATTCTATCA
1 CAGAAGGAGGTGGATCAACATCAACTTTTTGCTTGATTCTATCA
* * * * * * *
109053 CAGAAGGAGGTAGATCAACACCAACATCTCG-TTCGATTCCATTA
1 CAGAAGGAGGTGGATCAACATCAACTTTTTGCTT-GATTCTATCA
*
109097 CAGAAGGAGATGGATC
1 CAGAAGGAGGTGGATC
109113 GATATTTTTA
Statistics
Matches: 232, Mismatches: 79, Indels: 26
0.69 0.23 0.08
Matches are distributed among these distances:
42 1 0.00
43 34 0.15
44 163 0.70
45 33 0.14
46 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
CAGAAGGAGGTGGATCAACATCAACTTTTTGCTTGATTCTATCA
Found at i:109903 original size:3 final size:3
Alignment explanation
Indices: 109895--109988 Score: 154
Period size: 3 Copynumber: 31.3 Consensus size: 3
109885 GGGTTGAAAA
*
109895 ATT ATT ATT AAAT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
109941 ATT ATT ATT ATT ATT ATT -TT ATT ATT CTT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
109988 A
1 A
109989 CTCAGGCACT
Statistics
Matches: 85, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
2 2 0.02
3 81 0.95
4 2 0.02
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:110202 original size:23 final size:22
Alignment explanation
Indices: 110168--110211 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
110158 AAGAGAGGAA
*
110168 GCCATAGATAGAAGAGATGAAAG
1 GCCATAGATAG-AGAGAAGAAAG
110191 GCCATACG-TAGAGAGAAGAAA
1 GCCATA-GATAGAGAGAAGAAA
110212 AGAGGAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 9 0.47
23 9 0.47
24 1 0.05
ACGTcount: A:0.48, C:0.11, G:0.30, T:0.11
Consensus pattern (22 bp):
GCCATAGATAGAGAGAAGAAAG
Found at i:110549 original size:146 final size:145
Alignment explanation
Indices: 110229--110625 Score: 406
Period size: 146 Copynumber: 2.7 Consensus size: 145
110219 AAATAGAAAA
*
110229 CAACA-TCTCAAACGGTCAAAAGTTGAGCAAGGCCAGCAGGAACAACATACTGAAAATTCAAGAC
1 CAACATTC-CAAAAGGTCAAAAGTTGAG-AAGGCCAGCAGGAACAACATACTGAAAATTCAAGAC
* *
110293 AATCGGACGGTGGACGGTGGACGGTGGCGGATCGGAGAAAACAAATTCGAACGGGTTTAGGAATC
64 AATCGGACGGTGGA---T--A--GTGGCGGATCAGAGAAAACAAATTCGAACGGCTTTAGGAATC
* * * *
110358 TTGTCGGTGATCGGGAAATCCGAT
122 TTGCCAGCGATCGGGAAATCCAAT
*
110382 CAATATT--AAGAACGGTCAAAAGTTGAGAAAGGCCAGCAGGAACAACATACTGAAAATTCAAGA
1 CAACATTCCAA-AA-GGTCAAAAGTTGAG-AAGGCCAGCAGGAACAACATACTGAAAATTCAAGA
* * **
110445 CGATCGGATGGTGGATAGTGGCGGATCAGAGAAAACAAATTCGAACGGCTTTAGGCCTCTTGCCA
63 CAATCGGACGGTGGATAGTGGCGGATCAGAGAAAACAAATTCGAACGGCTTTAGGAATCTTGCCA
**
110510 GCGATCGGGATGTCCAAT
128 GCGATCGGGAAATCCAAT
* * * * * * *
110528 CAACATTCCAAAAGGTGAAAAGTTGTTCGAA-GTCAACACGAACAACATACTGAAAAATCAGGAC
1 CAACATTCCAAAAGGTCAAAAGTTG--AGAAGGCCAGCAGGAACAACATACTGAAAATTCAAGAC
* * ** *
110592 TATCGGACGGTGGACAACGGCAGATCAGAGAAAA
64 AATCGGACGGTGGATAGTGGCGGATCAGAGAAAA
110626 TAAAATCTAA
Statistics
Matches: 208, Mismatches: 29, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
146 129 0.62
147 4 0.02
148 4 0.02
150 1 0.00
151 2 0.01
152 1 0.00
153 66 0.32
154 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.18
Consensus pattern (145 bp):
CAACATTCCAAAAGGTCAAAAGTTGAGAAGGCCAGCAGGAACAACATACTGAAAATTCAAGACAA
TCGGACGGTGGATAGTGGCGGATCAGAGAAAACAAATTCGAACGGCTTTAGGAATCTTGCCAGCG
ATCGGGAAATCCAAT
Found at i:110712 original size:20 final size:20
Alignment explanation
Indices: 110683--110724 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
110673 GGATTCTGTT
110683 ATTTTATTTTAACC-TTTTA
1 ATTTTATTTTAACCATTTTA
*
110702 ATTTATATTTTTACCATTTTA
1 ATTT-TATTTTAACCATTTTA
110723 AT
1 AT
110725 CCTTGAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 9 0.45
21 7 0.35
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTTTATTTTAACCATTTTA
Found at i:117226 original size:13 final size:14
Alignment explanation
Indices: 117195--117245 Score: 63
Period size: 13 Copynumber: 3.8 Consensus size: 14
117185 ATCAGAACAA
*
117195 AAAGAGAAAAAAAGC
1 AAAGAGAAAATAA-C
117210 AAAGAGAAAATAA-
1 AAAGAGAAAATAAC
117223 AAAGAGAAAA-AAC
1 AAAGAGAAAATAAC
117236 AAAG-GAAAAT
1 AAAGAGAAAAT
117246 TGAAGAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
12 7 0.21
13 14 0.42
15 12 0.36
ACGTcount: A:0.75, C:0.04, G:0.18, T:0.04
Consensus pattern (14 bp):
AAAGAGAAAATAAC
Found at i:117238 original size:26 final size:27
Alignment explanation
Indices: 117193--117245 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 27
117183 CAATCAGAAC
117193 AAAAAGAGAAAAAAAGCAAAGAGAAAAT
1 AAAAAGAGAAAAAAAGCAAAG-GAAAAT
117221 AAAAAGAG-AAAAAA-CAAAGGAAAAT
1 AAAAAGAGAAAAAAAGCAAAGGAAAAT
117246 TGAAGAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 6 0.24
26 5 0.20
27 6 0.24
28 8 0.32
ACGTcount: A:0.75, C:0.04, G:0.17, T:0.04
Consensus pattern (27 bp):
AAAAAGAGAAAAAAAGCAAAGGAAAAT
Found at i:118419 original size:32 final size:32
Alignment explanation
Indices: 118378--118472 Score: 136
Period size: 32 Copynumber: 2.9 Consensus size: 32
118368 TGAGGGCATC
*
118378 TTTGAAGATTCAATATCAAATGTTGGGGCATTT
1 TTTG-AGATTCAACATCAAATGTTGGGGCATTT
* *
118411 TTTTAGATTTAACATCAAATGTTGGGGCATTT
1 TTTGAGATTCAACATCAAATGTTGGGGCATTT
* *
118443 TTTGAGATTCAACATCGAATATTGGGGCAT
1 TTTGAGATTCAACATCAAATGTTGGGGCAT
118473 CTTTGGGAAG
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
32 52 0.95
33 3 0.05
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (32 bp):
TTTGAGATTCAACATCAAATGTTGGGGCATTT
Found at i:119194 original size:106 final size:106
Alignment explanation
Indices: 119068--119383 Score: 436
Period size: 106 Copynumber: 3.0 Consensus size: 106
119058 ATATCGTGCC
* * * *
119068 ACTCAAGACAACACAAGTTCAACTCCACAACAAAGGGACGGCTGGTTATCAACAAACAATTTTCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTTCC
119133 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTAG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTAG
* *
119174 ACTCGAGACAACACAAGTTCAACTTCATAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTTCC
** *
119239 AATTTTGGAGCCAATTTCAACTTCAAAGCGAAGGATATTAG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTAG
* * * * *
119280 ACTCGAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGGCTGTCAACAAACAA-TTTCT
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTTC-
* * * * * *
119344 TAGTTCCAGAGCCAATTTTAACTTCACGGCGGAGGATATT
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATT
119384 GGACACAGAA
Statistics
Matches: 184, Mismatches: 25, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
105 3 0.02
106 181 0.98
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (106 bp):
ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTTCC
AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTAG
Found at i:119671 original size:29 final size:29
Alignment explanation
Indices: 119634--119725 Score: 99
Period size: 29 Copynumber: 3.4 Consensus size: 29
119624 CTTGAGACAG
*
119634 TTTCTCTTGAAACATAAACATTGAAAACA
1 TTTCCCTTGAAACATAAACATTGAAAACA
**
119663 TTTCCCTTGAAACA-AAATTTTG------
1 TTTCCCTTGAAACATAAACATTGAAAACA
*
119685 TCTCCCTTGAAACATAAACATTGAAAACA
1 TTTCCCTTGAAACATAAACATTGAAAACA
119714 TTTCCCTTGAAA
1 TTTCCCTTGAAA
119726 TGAATTTTAT
Statistics
Matches: 49, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
22 13 0.27
23 6 0.12
28 6 0.12
29 24 0.49
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.33
Consensus pattern (29 bp):
TTTCCCTTGAAACATAAACATTGAAAACA
Found at i:119782 original size:37 final size:37
Alignment explanation
Indices: 119714--119902 Score: 141
Period size: 37 Copynumber: 5.4 Consensus size: 37
119704 ATTGAAAACA
** * **
119714 TTTCCCTTGAAA-TGAATTTTATCTCGATTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
119750 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
* * * *
119787 TTTCTCTTGAAACATAAA---------CATTGA-AAACT
1 TTTCCCTTGAAACA-AAATTTTGTCTCCCTTGAGATA-G
* ** *
119816 TTTCCTTTGAAA-TTAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
*
119852 TTTCCCTTGAAATAAAATTTTGTCTCCCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
*
119889 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
119903 TAAACCTTGA
Statistics
Matches: 116, Mismatches: 23, Indels: 27
0.70 0.14 0.16
Matches are distributed among these distances:
27 2 0.02
28 2 0.02
29 15 0.13
36 27 0.23
37 67 0.58
38 3 0.03
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (37 bp):
TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAG
Found at i:119806 original size:102 final size:102
Alignment explanation
Indices: 119690--119929 Score: 390
Period size: 102 Copynumber: 2.4 Consensus size: 102
119680 TTTTGTCTCC
119690 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTATCTCGATTGAGATAGTTTCC
1 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTATCTCGATTGAGATAGTTTCC
119755 CTTGAAACAAAATTTTGTCTCCCTTGAGATAGTTTCT
66 CTTGAAACAAAATTTTGTCTCCCTTGAGATAGTTTCT
* * * * **
119792 CTTGAAACATAAACATTGAAAACTTTTCCTTTGAAATTAATTTTGTCTCTCTTGAGATAGTTTCC
1 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTATCTCGATTGAGATAGTTTCC
*
119857 CTTGAAATAAAATTTTGTCTCCCTTGAGATAGTTTCT
66 CTTGAAACAAAATTTTGTCTCCCTTGAGATAGTTTCT
* **
119894 CTTGAAACATAAACCTTGAAAATGTTTCCCTTGAAA
1 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAA
119930 CACAAAATAT
Statistics
Matches: 127, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 127 1.00
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.38
Consensus pattern (102 bp):
CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTATCTCGATTGAGATAGTTTCC
CTTGAAACAAAATTTTGTCTCCCTTGAGATAGTTTCT
Found at i:119975 original size:255 final size:254
Alignment explanation
Indices: 119514--120157 Score: 746
Period size: 255 Copynumber: 2.5 Consensus size: 254
119504 ATGCTCACCA
* * * *
119514 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATTTA-TTTTCATTGAAACTAAT
1 TTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAACA-TTGAA-TAACTTTTCCTTGAAACTAAT
* *
119578 TTCGTCTCCCTTGAGACATTTTCTTTTGGAACTAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG
64 TTCGTCTCCCTTGAGACAATTTCTTTTAGAACTAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG
*** *
119643 AAACATAAACATTGAAAACATTTCCCTTGAAACAAAATTTTGTCTCCCTTGAAACATAAACATTG
129 AAACATAAACATTGAAAACATTTCCCTTGAAACAAAATTTTAAATCCCTTGAAACACAAACATTG
** * *
119708 AAAACATTTCCCTTGAAA-TGAATTTTATCTCGATTGAGATAGTTTCCCTTGAAACAAAATT
194 AAAACATTTCCCTTGAAACAAAATCTTATCTCGATTGAGACAGTTTCCCTTGAAAC-AAATT
* * *
119769 TTGTCTCCCTTGAGATAGTTTCTCTTGAAACATAAACATTGAA-AACTTTTCCTTTGAAATTAAT
1 TTGTCTCTCTTGAGATAGTTTCCCTTGAAACA-AAACATTGAATAACTTTTCC-TTGAAACTAAT
* * * * ** * *
119833 TTTGTCTCTCTTGAGATAGTTTCCCTT-GAAATAAAATTTTGTCTCCCTTGAGATAGTTTCTCTT
64 TTCGTCTCCCTTGAGACAATTTCTTTTAGAACT-AAATTTTGTCTCCCTTGAGACAGTTTCTCTT
* ** * **
119897 GAAACATAAACCTTGAAAATGTTTCCCTTGAAACACAAAATATTTAAAT-CCTT-AAA-ACGAGT
128 GAAACATAAACATTGAAAACATTTCCCTTG-AA-ACAAAAT-TTTAAATCCCTTGAAACACAAAC
* * * **
119959 TTTG-AGACAGTTTCCCTTGAAACAAAATCTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAT
190 ATTGAAAACA-TTTCCCTTGAAACAAAATCTTATCTCGATTGAGACAGTTTCCCTTGAAACAAAT
120023 T
254 T
* * *
120024 TTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATCTTTGAATATCTTTTCCTTGAAACAAATT
1 TTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAA-CATTGAATAACTTTTCCTTGAAACTAATT
* * * *
120089 TCGTCTCCCTTGAGACAATTTCTTTTAGAACTAAGTTTTATCTCTCTTGAGACAGTTTCTTTTGA
65 TCGTCTCCCTTGAGACAATTTCTTTTAGAACTAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGA
120154 AACA
130 AACA
120158 AATTTTGTCC
Statistics
Matches: 325, Mismatches: 52, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
253 1 0.00
254 16 0.05
255 242 0.74
256 51 0.16
257 11 0.03
258 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.39
Consensus pattern (254 bp):
TTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAACATTGAATAACTTTTCCTTGAAACTAATTT
CGTCTCCCTTGAGACAATTTCTTTTAGAACTAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAA
ACATAAACATTGAAAACATTTCCCTTGAAACAAAATTTTAAATCCCTTGAAACACAAACATTGAA
AACATTTCCCTTGAAACAAAATCTTATCTCGATTGAGACAGTTTCCCTTGAAACAAATT
Found at i:120001 original size:37 final size:37
Alignment explanation
Indices: 119960--120062 Score: 181
Period size: 36 Copynumber: 2.8 Consensus size: 37
119950 AAAACGAGTT
119960 TTGAGACAGTTTCCCTTGAAACAAAATCTTGTCTCTC
1 TTGAGACAGTTTCCCTTGAAACAAAATCTTGTCTCTC
*
119997 TTGAGACAGTTTCCCTTGAAAC-AAATTTTGTCTCTC
1 TTGAGACAGTTTCCCTTGAAACAAAATCTTGTCTCTC
*
120033 TTGAGATAGTTTCCCTTGAAACAAAATCTT
1 TTGAGACAGTTTCCCTTGAAACAAAATCTT
120063 TGAATATCTT
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
36 34 0.55
37 28 0.45
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (37 bp):
TTGAGACAGTTTCCCTTGAAACAAAATCTTGTCTCTC
Found at i:120083 original size:102 final size:102
Alignment explanation
Indices: 119973--120159 Score: 245
Period size: 102 Copynumber: 1.8 Consensus size: 102
119963 AGACAGTTTC
* * *
119973 CCTTGAAACAAAATCTT-GTCTCTCTTGAGACAGTTTCCCTTGA-AAC-AAATTTTGTCTCTCTT
1 CCTTGAAAC-AAAT-TTCGTCTCCCTTGAGACAATTT-CCTTGAGAACTAAATTTTATCTCTCTT
*
120035 GAGATAGTTTCCCTTGAAACAAAATCTTTGAATATCTTTT
63 GAGACAGTTTCCCTTGAAACAAAATCTTTGAATATCTTTT
* * *
120075 CCTTGAAACAAATTTCGTCTCCCTTGAGACAATTTCTTTTAGAACTAAGTTTTATCTCTCTTGAG
1 CCTTGAAACAAATTTCGTCTCCCTTGAGACAATTTCCTTGAGAACTAAATTTTATCTCTCTTGAG
**
120140 ACAGTTTCTTTTGAAACAAA
66 ACAGTTTCCCTTGAAACAAA
120160 TTTTGTCCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
100 6 0.08
101 24 0.33
102 43 0.59
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (102 bp):
CCTTGAAACAAATTTCGTCTCCCTTGAGACAATTTCCTTGAGAACTAAATTTTATCTCTCTTGAG
ACAGTTTCCCTTGAAACAAAATCTTTGAATATCTTTT
Found at i:120179 original size:36 final size:36
Alignment explanation
Indices: 120072--120193 Score: 140
Period size: 36 Copynumber: 3.4 Consensus size: 36
120062 TTGAATATCT
* * *
120072 TTTC-CTTGAAACAAATTTCGTCTCCCTTGAGACAA
1 TTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAG
* * *
120107 TTTCT-TTTAGAACTAAGTTTTATCTCTCTTGAGACAG
1 TTTCTCTTGA-AAC-AAATTTTGTCTCTCTTGAGACAG
* *
120144 TTTCTTTTGAAACAAATTTTGTCCCTCTTGAGACAG
1 TTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAG
120180 TTTCTCTTGAAACA
1 TTTCTCTTGAAACA
120194 CAAAAAAAAA
Statistics
Matches: 72, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
35 7 0.10
36 36 0.50
37 26 0.36
38 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.41
Consensus pattern (36 bp):
TTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAG
Found at i:120261 original size:42 final size:39
Alignment explanation
Indices: 120179--120277 Score: 123
Period size: 42 Copynumber: 2.5 Consensus size: 39
120169 TCTTGAGACA
*
120179 GTTTCTCTTG-AA-ACACAAAAAAAAAACCCTCGAAATT
1 GTTTCTCTTGAAACACACAAAAAAAAAACCCTCGAAAAT
* *
120216 GTTTCTCTTGAAACACACACACAACAAAAAACCTTTGAAAAT
1 GTTTCTCTTGAAACACACA-A-AA-AAAAAACCCTCGAAAAT
120258 GTTTCTCTTGAAACAC-CAAA
1 GTTTCTCTTGAAACACACAAA
120278 CCCTCGATTT
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
37 10 0.19
38 2 0.04
39 6 0.11
40 2 0.04
41 4 0.07
42 30 0.56
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.25
Consensus pattern (39 bp):
GTTTCTCTTGAAACACACAAAAAAAAAACCCTCGAAAAT
Found at i:121598 original size:18 final size:17
Alignment explanation
Indices: 121559--121598 Score: 71
Period size: 17 Copynumber: 2.3 Consensus size: 17
121549 TAAATTTTGT
121559 TGAGAAAAAATTAGTAA
1 TGAGAAAAAATTAGTAA
121576 TGAGAAAAAATTAGTAA
1 TGAGAAAAAATTAGTAA
121593 TAGAGA
1 T-GAGA
121599 TACTTTCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (17 bp):
TGAGAAAAAATTAGTAA
Found at i:123593 original size:8 final size:8
Alignment explanation
Indices: 123580--123613 Score: 59
Period size: 8 Copynumber: 4.1 Consensus size: 8
123570 ATCAGGCAGT
123580 AGACTAGC
1 AGACTAGC
123588 AGACTAGC
1 AGACTAGC
123596 AGACTAGC
1 AGACTAGC
123604 AGACTTAGC
1 AGAC-TAGC
123613 A
1 A
123614 TTAGAAGGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 20 0.80
9 5 0.20
ACGTcount: A:0.38, C:0.24, G:0.24, T:0.15
Consensus pattern (8 bp):
AGACTAGC
Found at i:124611 original size:22 final size:22
Alignment explanation
Indices: 124586--125861 Score: 1805
Period size: 22 Copynumber: 59.5 Consensus size: 22
124576 ATAATAAATT
*
124586 TTTTAAAATAAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
124608 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
124630 TATTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
124652 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
124674 TATTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
* *
124696 TTTTAAAATAAA--ATTTTCATA
1 TTTTAAAATAAATCA-ATCCATA
124717 TTTT-AAA-AAATCAAT-CATA
1 TTTTAAAATAAATCAATCCATA
124736 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
124758 TTTTAAAATGAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
** *
124780 TTTTAAAAT-AAT-TTTTCATA
1 TTTTAAAATAAATCAATCCATA
124800 -TTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
124821 TTTTAAAAT-AATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
124842 TTTTAAAAT-AATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
124863 TTTT-AAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
124884 TATT-AAATAAATC-ATCCATA
1 TTTTAAAATAAATCAATCCATA
124904 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
124926 TATTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
** *
124948 TTTT-AAATAAAAT-TTTTCATA
1 TTTTAAAAT-AAATCAATCCATA
124969 -TTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
124990 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
125012 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
125034 TTTTAAAATGAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
125056 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
125078 TATTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
125100 TTTTAAAATTAA-CAATCCATA
1 TTTTAAAATAAATCAATCCATA
125121 TTTTAAAATAAATC-ATCCATA
1 TTTTAAAATAAATCAATCCATA
*
125142 TATTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
125164 TTTTAAAATAAATCAATCC-TA
1 TTTTAAAATAAATCAATCCATA
125185 --TT-AAAT-AATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
** *
125203 TTTTAAAATAAAAT-TTTTCATA
1 TTTTAAAAT-AAATCAATCCATA
125225 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
125247 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
125269 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
125291 TTTTAAAATGAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
** *
125313 TTTTAAAATAAAT-TTTTCATA
1 TTTTAAAATAAATCAATCCATA
125334 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
125356 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
125378 TTTTAAAATAAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
125400 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
125422 TATTAAAAT-AATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
125443 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
125465 ---TAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
** *
125484 TTTT-AAATAAAAT-TTTTCATA
1 TTTTAAAAT-AAATCAATCCATA
125505 TTTT-AAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
125526 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
125548 TTTTAAAATGAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
** *
125570 TTTTAAAATAAAT-TTTTCATA
1 TTTTAAAATAAATCAATCCATA
125591 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
125613 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
125635 TTTTAAAATAAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
125657 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
***
125679 TTTTAAAATAAATTTTTCCATA
1 TTTTAAAATAAATCAATCCATA
125701 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
***
125723 TTTTAAAAT-AATTTTTCCATA
1 TTTTAAAATAAATCAATCCATA
**
125744 TTTT-AAATAAATCAATTTATA
1 TTTTAAAATAAATCAATCCATA
**
125765 TTTTAAAATAAAT-TTTCCATA
1 TTTTAAAATAAATCAATCCATA
*
125786 TTTTAAAATAAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
*** *
125808 TTTTAAAATAAATTTTTTCATA
1 TTTTAAAATAAATCAATCCATA
125830 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
125852 TTTTAAAATA
1 TTTTAAAATA
125862 GATTTTAAAA
Statistics
Matches: 1120, Mismatches: 97, Indels: 74
0.87 0.08 0.06
Matches are distributed among these distances:
17 9 0.01
18 6 0.01
19 40 0.04
20 47 0.04
21 285 0.25
22 730 0.65
23 3 0.00
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (22 bp):
TTTTAAAATAAATCAATCCATA
Found at i:125257 original size:279 final size:282
Alignment explanation
Indices: 124588--125861 Score: 1799
Period size: 279 Copynumber: 4.6 Consensus size: 282
124578 AATAAATTTT
*
124588 TTAAAATAAATCAATTCATATTTTAAAATAAATCAATCCATATATTAAAATAAATCAATCCATAT
1 TTAAAATAAATCAATCCATATTTTAAAATAAATCAATCC--ATATT-AAATAAATCAATCCATAT
** * * *
124653 TTTAAAATAAATCAATCCATATATTAAAATAAATCAATCCATATTTTAAAATAAA--ATTTTCAT
63 TTTAAAATAAAT-TTTCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCA-ATCCAT
*
124716 ATTTT-AAA-AAATCAAT-CATATTTTAAAATAAATCAATCCATATTTTAAAATGAATCAATCCA
126 ATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCA
** *
124778 TATTTTAAAAT-AAT-TTTTCATA-TTTAAAATAAATCAATCCATATTTTAAAAT-AATCAATCC
191 TATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCC
*
124839 ATATTTTAAAAT-AATCAATTCATAT-
256 ATATTTTAAAATAAATCAATCCATATA
* *
124864 TTTAAATAAATCAATCCATATATT-AAATAAATC-ATCCATATTTTAAAATAAATCAATCCATAT
1 TTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATA--TT-AAATAAATCAATCCATAT
* ** ** *
124927 ATTAAAATAAATCAATCCATATTTT-AAATAAAAT-TTTTCATA-TTTAAAATAAATCAATCCAT
63 TTTAAAATAAAT-TTTCCATATTTTAAAAT-AAATCAATCCATATTTTAAAATAAATCAATCCAT
*
124989 ATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATGAATCAATCCA
126 ATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCA
* *
125054 TATTTTAAAATAAATCAATCCATATATTAAAATAAATCAATCCATATTTTAAAATTAA-CAATCC
191 TATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCC
125118 ATATTTTAAAATAAATC-ATCCATATA
256 ATATTTTAAAATAAATCAATCCATATA
125144 TTAAAATAAATCAATCCATATTTTAAAATAAATCAATCC-TATTAAAT-AATCAATCCATATTTT
1 TTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTAAATAAATCAATCCATATTTT
*
125207 AAAATAAAATTTTTCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTT
66 AAAAT-AAATTTTCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTT
* ** *
125272 TAAAATAAATCAATCCATATTTTAAAATGAATCAATCCATATTTTAAAATAAAT-TTTTCATATT
130 TAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATT
*
125336 TTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATTCATAT
195 TTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
125401 TTTAAAATAAATCAATCCATATA
260 TTTAAAATAAATCAATCCATATA
*
125424 TTAAAAT-AATCAATCCATATTTTAAAATAAATCAATCCATATAAAATAAATCAATCCATATTTT
1 TTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTAAATAAATCAATCCATATTTT
*
125488 -AAATAAAATTTTTCATATTTT-AAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTT
66 AAAAT-AAATTTTCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTT
* ** *
125551 TAAAATGAATCAATCCATATTTTAAAATAAAT-TTTTCATATTTTAAAATAAATCAATCCATATT
130 TAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATT
*
125615 TTAAAATAAATCAATCCATATTTTAAAATAAATCAATTCATATTTTAAAATAAATCAATCCATAT
195 TTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
*** *
125680 TTTAAAATAAATTTTTCCATATT
260 TTTAAAATAAATCAATCCATATA
*** **
125703 TTAAAATAAATCAATCCATATTTTAAAAT-AATTTTTCCATATTTTAAATAAATCAATTTATATT
1 TTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATA--TTAAATAAATCAATCCATATT
* *** *
125767 TTAAAATAAATTTTCCATATTTTAAAATAAATCAATTCATATTTTAAAATAAATTTTTTCATATT
64 TTAAAATAAATTTTCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATT
125832 TTAAAATAAATCAATCCATATTTTAAAATA
129 TTAAAATAAATCAATCCATATTTTAAAATA
125862 GATTTTAAAA
Statistics
Matches: 908, Mismatches: 60, Indels: 54
0.89 0.06 0.05
Matches are distributed among these distances:
272 14 0.02
273 18 0.02
274 56 0.06
275 17 0.02
276 78 0.09
277 36 0.04
278 99 0.11
279 362 0.40
280 93 0.10
281 62 0.07
282 73 0.08
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (282 bp):
TTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTAAATAAATCAATCCATATTTT
AAAATAAATTTTCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTT
AAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTT
TAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATT
TTAAAATAAATCAATCCATATA
Found at i:125881 original size:11 final size:12
Alignment explanation
Indices: 125851--125890 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
125841 ATCAATCCAT
125851 ATTTTAAAATAG
1 ATTTTAAAATAG
125863 ATTTTAAAATAG
1 ATTTTAAAATAG
125875 A-TTT-AAAT-G
1 ATTTTAAAATAG
125884 ATTTTAA
1 ATTTTAA
125891 TTTTCCCGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 2 0.08
10 7 0.27
11 4 0.15
12 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.45
Consensus pattern (12 bp):
ATTTTAAAATAG
Found at i:129911 original size:19 final size:19
Alignment explanation
Indices: 129887--129929 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
129877 TTGGGGATTG
*
129887 AGAAGGGTGTTGTTCTTTA
1 AGAAGGGTGTTGTTATTTA
129906 AGAAGGGTGTTGTTATTTA
1 AGAAGGGTGTTGTTATTTA
129925 AGAAG
1 AGAAG
129930 CTAGACCTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.28, C:0.02, G:0.33, T:0.37
Consensus pattern (19 bp):
AGAAGGGTGTTGTTATTTA
Found at i:131943 original size:25 final size:25
Alignment explanation
Indices: 131912--131959 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
131902 ATTTATCTTT
*
131912 TAAATTTTATTAAAAAATGTATATA
1 TAAATTTTATTAAAAAATATATATA
131937 TAAATTTTATTAAAAAATATATA
1 TAAATTTTATTAAAAAATATATA
131960 AATTTAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
TAAATTTTATTAAAAAATATATATA
Done.