Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008567.1 Hibiscus syriacus cultivar Beakdansim tig00111484_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58335

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3901--3938
20
1.9
20
88
0
58
10
26
36
26
1.89
3921--3977
20
2.8
20
81
5
60
19
21
36
22
1.95
7785--7829
21
2.2
21
84
4
56
35
8
2
53
1.45
9736--9775
22
1.9
21
90
10
64
15
22
40
22
1.91
13600--13683
27
3.1
27
98
0
159
29
36
8
25
1.85
14218--14273
16
3.5
16
82
4
69
32
12
8
46
1.73
15281--15338
30
1.9
31
92
3
100
63
3
0
32
1.11
18676--18820
53
2.7
54
81
5
168
46
4
24
23
1.71
18898--19104
106
2.0
106
81
7
251
27
2
33
35
1.72
19007--19241
102
2.3
102
83
7
282
33
3
29
33
1.76
19711--19877
18
9.3
18
66
19
73
45
2
4
46
1.39
19735--19761
13
2.1
13
100
0
54
40
7
7
44
1.60
19749--19861
31
3.9
29
80
16
117
46
2
5
46
1.39
19662--19887
125
1.8
126
93
0
391
44
3
5
46
1.43
19748--19875
56
2.3
57
80
11
174
45
3
5
46
1.42
19855--19891
14
2.5
15
91
8
58
37
5
5
51
1.48
19886--19968
15
5.5
15
68
21
66
46
6
6
40
1.53
19872--19996
30
4.2
30
89
5
175
46
5
4
43
1.48
19884--19998
15
7.5
16
65
14
64
48
6
4
40
1.48
19662--19985
125
2.7
122
82
9
326
45
4
5
45
1.44
20105--20339
9
25.3
9
67
22
89
41
2
9
46
1.49
20111--20634
11
48.7
11
66
18
112
41
4
7
46
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20111--20480
22
17.2
22
66
21
139
41
3
8
46
1.50
20164--20317
58
3.1
48
73
20
127
38
3
9
48
1.51
20258--20383
37
3.6
33
69
21
87
45
2
7
45
1.44
20414--20665
33
7.9
33
65
28
84
41
5
5
47
1.50
20426--20513
31
2.7
34
86
10
105
44
4
5
45
1.48
20619--20680
16
3.8
16
79
14
65
40
3
4
51
1.39
21027--21068
6
6.8
6
79
15
50
30
2
0
66
1.04
23147--23209
11
5.9
11
73
14
60
57
1
1
39
1.18
23326--23390
21
3.1
22
80
8
64
36
32
4
26
1.77
23963--24112
75
2.0
74
97
1
282
40
9
2
48
1.50
25384--25418
17
2.1
17
94
0
61
14
0
20
65
1.26
26926--27273
185
1.9
184
92
1
590
40
2
9
47
1.48
28288--28330
6
7.2
6
94
0
68
4
16
48
30
1.66
33927--33975
5
9.8
5
93
0
62
6
40
36
16
1.73
33973--34045
6
12.2
6
97
0
101
6
16
49
27
1.71
34320--34374
22
2.5
22
75
0
56
29
9
23
38
1.85
35323--35428
51
2.1
49
84
3
140
36
14
10
38
1.80
39717--39793
31
2.5
31
85
10
111
41
2
5
50
1.38
40257--40420
75
2.2
70
78
17
170
32
7
4
54
1.51
45358--45500
71
2.0
71
98
0
277
35
11
22
30
1.89
50348--50470
35
3.5
35
85
2
156
43
24
0
31
1.54
52502--52594
35
2.6
36
84
5
127
35
1
19
44
1.58

Tables:   1

The End!