Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008568.1 Hibiscus syriacus cultivar Beakdansim tig00111492_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68128

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8156--8252
51
1.9
51
84
0
131
48
15
21
14
1.80
8989--9447
106
4.3
106
94
0
787
33
24
18
22
1.96
10811--10848
20
1.9
20
88
0
58
18
42
34
5
1.73
11210--11255
24
1.9
24
100
0
92
30
4
0
65
1.12
12858--12908
20
2.4
21
84
12
61
47
0
0
52
1.00
12913--12954
21
2.0
21
86
4
59
28
7
9
54
1.59
15320--15363
11
4.1
11
77
16
56
29
0
0
70
0.88
15319--15359
21
2.0
20
90
4
64
31
0
0
68
0.90
15327--15370
21
2.1
21
87
8
63
34
0
0
65
0.93
16197--16568
155
2.4
152
81
7
417
47
5
15
31
1.68
16235--16571
155
2.2
156
82
7
418
48
5
16
29
1.68
16328--16625
155
1.9
153
80
9
345
49
4
16
29
1.66
17876--17916
3
13.7
3
100
0
82
0
31
0
68
0.90
26765--26823
28
2.1
28
87
6
84
57
8
11
22
1.61
29635--29958
162
2.0
162
99
0
639
40
16
15
27
1.89
31176--31218
23
1.9
22
81
13
52
34
2
18
44
1.63
37513--37583
35
2.0
36
97
2
135
16
32
30
19
1.95
38192--38221
15
2.0
15
100
0
60
13
26
33
26
1.93
45042--45071
15
2.0
15
100
0
60
13
20
33
33
1.91
48139--48179
2
20.5
2
89
0
64
4
43
0
51
1.23
48766--48806
22
1.9
21
85
5
55
19
24
24
31
1.98
52576--52600
3
8.3
3
100
0
50
0
0
32
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56186--56242
19
3.0
19
70
14
55
50
5
0
43
1.24
56168--56242
39
1.9
38
91
2
123
49
6
0
44
1.28
56631--56681
23
2.2
23
89
0
75
17
13
13
54
1.70
66462--66511
21
2.5
21
90
6
77
30
22
18
30
1.97
66678--66716
18
2.1
19
85
4
53
64
10
0
25
1.25

Tables:   1

The End!