Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000857.1 Hibiscus syriacus cultivar Beakdansim tig00001660_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125406

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4967--4997
2
15.5
2
100
0
62
51
0
0
48
1.00
9344--9405
24
2.7
23
84
2
88
29
27
25
17
1.98
10755--10791
13
2.8
13
91
0
56
32
27
0
40
1.57
11967--12028
32
1.9
32
83
6
81
37
9
19
33
1.84
12616--13057
199
2.2
198
88
3
649
40
15
14
29
1.87
13646--13695
23
2.2
23
88
0
73
34
18
10
38
1.84
13723--13766
23
1.9
23
90
0
70
34
11
9
45
1.72
13630--13859
87
2.7
87
87
0
336
32
12
10
43
1.77
13732--13776
23
2.0
23
86
0
63
37
8
11
42
1.72
13810--13905
23
4.2
23
90
1
140
34
17
7
40
1.78
13810--14110
46
6.8
45
66
17
157
33
14
8
43
1.76
13954--14001
23
2.1
23
84
0
60
39
12
10
37
1.77
13855--14087
87
2.7
86
87
0
331
33
13
9
44
1.75
13636--14110
219
2.2
219
92
0
790
32
13
10
43
1.77
13832--14274
196
2.3
197
90
1
685
33
12
9
43
1.76
14028--14110
23
3.6
23
93
0
139
32
16
6
44
1.72
14053--14284
87
2.7
86
85
5
306
34
10
9
45
1.72
14146--14197
23
2.3
23
82
0
68
38
7
9
44
1.66
18254--18299
21
2.2
22
84
7
60
52
0
0
47
1.00
21643--21683
3
14.3
3
85
10
59
65
0
0
34
0.93
22048--22423
117
3.2
116
90
1
576
27
21
19
30
1.98
23102--23156
22
2.5
22
93
0
92
40
10
12
36
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24491--24663
75
2.3
75
88
2
249
30
23
13
32
1.93
29513--29548
7
5.1
7
87
12
56
58
11
16
13
1.63
33213--33245
16
1.9
18
88
11
52
0
15
30
54
1.41
33737--33788
3
17.7
3
92
4
70
61
0
0
38
0.96
46999--47084
37
2.3
37
84
6
120
38
38
11
11
1.78
47156--47233
38
2.3
33
76
21
88
41
34
10
14
1.79
47158--47237
37
2.2
37
93
4
135
38
36
11
13
1.81
46957--47274
153
2.1
155
89
5
493
33
30
12
22
1.91
72917--72969
20
2.5
22
76
11
58
41
13
5
39
1.68
76289--76371
20
4.1
20
73
10
69
21
37
25
15
1.93
76289--76348
20
2.9
21
82
9
70
20
38
25
16
1.93
76311--76369
21
2.8
21
86
0
73
22
38
23
15
1.92
84749--84870
9
13.1
9
70
20
74
72
0
20
5
1.09
84743--84830
10
8.8
10
76
15
76
75
1
18
5
1.07
84742--84782
21
2.0
21
100
0
82
80
0
14
4
0.87
84778--84864
19
4.8
17
73
19
61
71
1
20
6
1.16
84778--84859
29
2.9
29
75
17
84
69
1
21
7
1.20
84770--84856
38
2.3
36
81
15
95
71
1
21
5
1.14
86020--86482
55
8.6
55
92
1
538
29
15
26
28
1.96
90830--90934
48
2.2
48
83
6
124
21
14
15
48
1.80
90867--90938
24
3.0
24
79
0
90
19
12
16
51
1.76
91908--91944
14
2.8
14
88
8
51
16
21
0
62
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101134--101163
12
2.5
12
100
0
60
6
16
43
33
1.74
101271--101304
3
10.7
3
87
12
50
61
0
0
38
0.96
109094--109149
24
2.4
24
87
3
87
35
7
26
30
1.83

Tables:   1

The End!