genome.fa.s8572.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008572.1 Hibiscus syriacus cultivar Beakdansim tig00111498_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  343468

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1622--1655	2	17.0	2	100	0	68	50	0	0	50	1.00
3028--3060	18	1.9	18	88	11	52	39	6	18	36	1.75
4285--5121	168	5.0	168	91	1	1328	22	29	13	35	1.91
8475--8598	60	2.1	58	83	3	149	31	14	16	37	1.88
9302--9359	24	2.4	25	97	2	109	50	8	10	31	1.67
13436--13483	21	2.3	21	96	0	87	8	18	18	54	1.68
27201--27225	5	5.0	5	100	0	50	80	0	20	0	0.72
27513--27593	32	2.5	32	93	0	144	20	14	12	51	1.74
33668--33709	21	2.0	21	86	4	59	40	0	7	52	1.29
39609--39760	59	2.6	58	80	7	173	30	20	5	42	1.76
39901--40039	59	2.4	58	77	4	145	43	4	19	32	1.70
46084--46176	14	6.6	14	75	15	84	43	3	2	51	1.29
46094--46481	8	52.5	8	64	21	71	40	4	5	50	1.44
46085--46339	23	11.3	23	76	16	121	40	4	5	49	1.44
46136--46393	37	6.7	37	84	9	329	39	5	6	49	1.50
46094--46512	14	32.0	14	67	21	180	39	4	5	50	1.46
46279--46385	23	4.7	22	81	11	101	39	6	6	47	1.55
46136--46527	37	9.7	41	79	14	280	40	4	5	49	1.48
46981--47029	6	8.2	6	90	0	71	16	61	4	18	1.50
48760--49119	173	2.1	173	92	1	596	38	18	4	38	1.72
49361--49444	41	2.0	41	95	0	150	17	30	19	32	1.95
49589--49632	23	1.9	23	95	0	79	27	38	25	9	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49812--49868	30	1.9	30	89	7	89	31	33	21	14	1.92
56489--56524	2	18.0	2	100	0	72	50	0	0	50	1.00
57378--57425	25	1.9	25	86	0	69	45	8	6	39	1.59
57465--57517	23	2.2	25	83	6	74	62	0	1	35	1.06
57468--57517	24	2.1	24	88	3	75	64	0	2	34	1.05
57448--57507	30	2.0	30	90	3	95	61	0	3	35	1.12
57497--57545	19	2.7	18	78	12	55	57	2	2	38	1.22
81364--81468	32	3.3	32	95	0	192	47	20	19	13	1.82
81922--82004	6	13.7	6	93	2	139	48	32	1	18	1.56
84794--84828	17	2.2	16	90	10	54	74	0	5	20	1.02
105322--105358	6	6.2	6	100	0	74	32	0	35	32	1.58
105379--105440	12	4.9	12	73	11	52	41	3	32	22	1.70
105377--105413	15	2.5	15	86	0	56	43	2	29	24	1.68
105382--105441	24	2.5	24	83	0	75	41	3	31	23	1.71
107873--107940	21	3.2	21	63	8	57	16	39	16	27	1.89
107849--107944	42	2.3	42	98	0	183	15	39	19	25	1.91
109872--109896	2	12.5	2	100	0	50	48	0	0	52	1.00
110646--110709	23	2.8	23	95	0	110	32	18	23	25	1.97
110697--110763	27	2.5	27	90	0	98	37	17	16	28	1.92
110818--110855	16	2.4	16	91	4	60	31	18	10	39	1.85
111838--111881	16	2.6	17	82	7	54	18	6	43	31	1.76
111981--112054	2	37.0	2	100	0	148	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112353--112501	74	2.0	75	80	7	169	49	3	10	36	1.53
115353--115448	29	3.2	29	69	5	84	37	9	4	48	1.55
115338--115482	60	2.4	61	75	8	145	35	14	4	46	1.64
115645--115805	60	2.7	60	80	2	180	39	6	22	31	1.79
124741--124801	24	2.5	25	78	2	70	47	0	19	32	1.50
132144--132177	17	1.9	18	88	5	52	17	0	14	67	1.23
134203--134242	17	2.3	18	83	12	57	25	2	5	67	1.23
139930--139992	32	1.9	33	93	3	110	22	33	17	26	1.96
145247--145272	12	2.2	12	100	0	52	23	15	11	50	1.76
150962--151134	60	2.9	58	75	11	145	30	21	5	42	1.74
162428--162473	23	2.0	23	100	0	92	56	17	21	4	1.58
165400--165451	21	2.5	21	83	0	68	26	17	55	0	1.42
165895--166030	60	2.3	61	78	7	145	35	15	15	33	1.89
166299--166375	38	2.0	38	100	0	154	31	16	10	41	1.82
179084--179160	37	2.1	37	83	9	95	46	2	3	46	1.34
183864--183964	35	2.9	36	94	2	170	49	0	4	45	1.23
196291--196331	14	2.8	16	78	17	52	58	0	0	41	0.98
196288--196364	30	2.4	31	79	14	77	57	1	0	41	1.07
201019--201049	15	2.1	15	94	5	55	54	0	0	45	0.99
202739--202777	19	2.1	19	100	0	78	43	5	20	30	1.73
203870--203927	29	2.0	28	83	3	71	48	5	13	32	1.65
205553--205586	17	1.9	18	88	5	52	52	0	2	44	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206812--206869	29	2.0	28	86	3	80	50	1	12	36	1.50
219349--219383	17	2.1	17	100	0	70	40	14	5	40	1.69
224753--224801	26	2.0	25	84	15	66	28	8	8	55	1.58
225022--225078	29	2.0	28	89	3	87	49	0	8	42	1.34
225851--225875	2	12.5	2	100	0	50	52	0	0	48	1.00
241831--241866	2	18.0	2	100	0	72	50	0	0	50	1.00
242920--242978	31	1.9	31	85	0	82	25	10	11	52	1.69
243419--243490	33	2.2	33	94	0	126	19	18	25	37	1.94
244854--244887	8	4.2	8	88	11	52	14	0	26	58	1.36
249073--250052	491	2.0	486	90	1	1557	24	16	17	41	1.90
259435--259558	66	1.9	66	90	6	198	58	11	4	25	1.52
260413--260440	3	9.3	3	100	0	56	0	0	32	67	0.91
271722--272135	141	2.9	140	80	3	474	27	19	17	35	1.94
276010--276062	12	4.2	13	83	11	67	20	11	0	67	1.21
276009--276064	13	4.4	13	78	17	64	19	10	0	69	1.17
284042--284094	10	5.6	10	74	19	51	62	0	0	37	0.96
284050--284094	18	2.5	18	100	0	90	62	0	0	37	0.96
284524--284578	24	2.3	24	80	0	65	54	18	16	10	1.70
285597--285663	21	3.2	21	76	2	55	28	19	20	31	1.97
297016--297062	22	2.1	23	88	4	69	38	25	12	23	1.90
308816--309257	226	2.0	221	92	3	733	45	8	7	38	1.62
309323--309369	20	2.4	19	89	10	76	55	10	17	17	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309490--309536	20	2.4	19	79	10	58	55	8	17	19	1.67
311835--311900	33	2.0	33	87	0	96	28	1	45	24	1.62
313699--313761	19	3.4	19	95	2	110	31	3	9	55	1.48
313843--315251	198	7.1	197	94	2	2481	37	14	15	33	1.88
316716--316777	18	3.4	18	88	0	88	38	6	33	20	1.79
316716--316777	6	10.3	6	83	0	61	38	6	33	20	1.79
316731--316781	3	17.0	3	83	0	66	37	3	33	25	1.74
316719--316781	12	5.2	12	90	0	81	36	6	33	23	1.80
318145--318998	184	4.7	184	98	0	1559	35	14	16	34	1.89
318145--318998	367	2.3	367	96	0	1557	35	14	16	34	1.89
321552--321614	23	2.7	23	90	0	90	36	6	19	38	1.77
321552--321624	23	3.2	23	86	3	85	35	5	19	39	1.75
322453--322486	17	2.1	16	89	10	52	55	0	0	44	0.99
327883--327920	20	1.9	20	94	0	67	36	15	23	23	1.94
342911--342989	31	2.5	31	89	0	122	46	18	13	20	1.83

Tables:   1

The End!