Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008575.1 Hibiscus syriacus cultivar Beakdansim tig00111504_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 896659
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 4
Found at i:254023 original size:24 final size:24
Alignment explanation
Indices: 253989--254045 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
253979 ATGGTGAATA
*
253989 CGATGGAGATGGTGAATACGACGG
1 CGATGGTGATGGTGAATACGACGG
*
254013 CGATGGTGATGGTGAATACGATGG
1 CGATGGTGATGGTGAATACGACGG
254037 CGATGGTGA
1 CGATGGTGA
254046 AGAAGATTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.26, C:0.11, G:0.42, T:0.21
Consensus pattern (24 bp):
CGATGGTGATGGTGAATACGACGG
Found at i:254034 original size:18 final size:18
Alignment explanation
Indices: 253968--254046 Score: 68
Period size: 18 Copynumber: 4.1 Consensus size: 18
253958 TCTGGAATTG
* *
253968 ATACGATAGTAATGGTGA
1 ATACGATGGTGATGGTGA
*
253986 ATACGATGGAGATGGTGA
1 ATACGATGGTGATGGTGA
254004 ATACGACGGCGATGGTGATGGTGA
1 AT---A---CGATGGTGATGGTGA
*
254028 ATACGATGGCGATGGTGA
1 ATACGATGGTGATGGTGA
254046 A
1 A
254047 GAAGATTTGG
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
18 32 0.64
21 2 0.04
24 16 0.32
ACGTcount: A:0.32, C:0.09, G:0.37, T:0.23
Consensus pattern (18 bp):
ATACGATGGTGATGGTGA
Found at i:258652 original size:3 final size:3
Alignment explanation
Indices: 258644--258677 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
258634 TTTAAGGATA
258644 AGG AGG AGG AGG AGG AGG AGG AGG ATGG AGG AGG
1 AGG AGG AGG AGG AGG AGG AGG AGG A-GG AGG AGG
258678 GTGTTGAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.65, T:0.03
Consensus pattern (3 bp):
AGG
Found at i:263566 original size:3 final size:3
Alignment explanation
Indices: 263558--263624 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
263548 TCCTGAAGCT
263558 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
263606 TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA T
263625 ATTTTGTGCA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:265300 original size:102 final size:104
Alignment explanation
Indices: 265108--265314 Score: 364
Period size: 102 Copynumber: 2.0 Consensus size: 104
265098 TAGGCATCAA
* *
265108 AAGTTAATTTGTGGTACAGTTTAGGCACTTATTTTTGCATTAACTCATAAAAAAGTTTAATTATA
1 AAGTCAATTTGTGGTACAATTTAGGCACTTATTTTTGCATTAACTCATAAAAAAGTTTAATTATA
265173 ATGAATCAAGTTACATCGGTGGTTAAGAGAAAGATTGTT
66 ATGAATCAAGTTACATCGGTGGTTAAGAGAAAGATTGTT
265212 AAGTCAATTTG-GGTACAATTTAGGCACTTATTTTTGCATTAACTCATAAAAAA-TTTAATTATA
1 AAGTCAATTTGTGGTACAATTTAGGCACTTATTTTTGCATTAACTCATAAAAAAGTTTAATTATA
* *
265275 ATGAATCAAGTTACATCGGTGGTTAAGGGAAATATTGTT
66 ATGAATCAAGTTACATCGGTGGTTAAGAGAAAGATTGTT
265314 A
1 A
265315 TTCTTAGAAC
Statistics
Matches: 99, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
102 48 0.48
103 41 0.41
104 10 0.10
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.37
Consensus pattern (104 bp):
AAGTCAATTTGTGGTACAATTTAGGCACTTATTTTTGCATTAACTCATAAAAAAGTTTAATTATA
ATGAATCAAGTTACATCGGTGGTTAAGAGAAAGATTGTT
Found at i:276480 original size:16 final size:16
Alignment explanation
Indices: 276459--276493 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
276449 AATTCGAATT
*
276459 GAGCTTAACGAGCATC
1 GAGCTTAACGAGCAAC
276475 GAGCTTAACGAGCAAC
1 GAGCTTAACGAGCAAC
276491 GAG
1 GAG
276494 TCAAACAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.34, C:0.23, G:0.29, T:0.14
Consensus pattern (16 bp):
GAGCTTAACGAGCAAC
Found at i:276749 original size:2 final size:2
Alignment explanation
Indices: 276738--276772 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
276728 AAGTTCTGAG
276738 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
276773 AGTGTATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:301195 original size:2 final size:2
Alignment explanation
Indices: 301188--301218 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
301178 CTAATCCGAC
301188 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
301219 ATTCTTTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:319942 original size:30 final size:30
Alignment explanation
Indices: 319906--319980 Score: 123
Period size: 30 Copynumber: 2.5 Consensus size: 30
319896 GGTCTGGCAA
*
319906 TGAACCGGCTGAAAACCGGTAGAACATGGG
1 TGAACCGGCTGAAAACCGGTAGAACAGGGG
* *
319936 TGAACCGACTGAAAACCGGTAGAATAGGGG
1 TGAACCGGCTGAAAACCGGTAGAACAGGGG
319966 TGAACCGGCTGAAAA
1 TGAACCGGCTGAAAA
319981 TCGGCAAAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.36, C:0.19, G:0.32, T:0.13
Consensus pattern (30 bp):
TGAACCGGCTGAAAACCGGTAGAACAGGGG
Found at i:325306 original size:17 final size:17
Alignment explanation
Indices: 325284--325318 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
325274 GAGTACTTTC
325284 GATAAGTTAGTCTTTGG
1 GATAAGTTAGTCTTTGG
325301 GATAAGTTAGTCTTTGG
1 GATAAGTTAGTCTTTGG
325318 G
1 G
325319 TGTTTGCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.06, G:0.31, T:0.40
Consensus pattern (17 bp):
GATAAGTTAGTCTTTGG
Found at i:342520 original size:60 final size:59
Alignment explanation
Indices: 342445--342619 Score: 217
Period size: 60 Copynumber: 2.9 Consensus size: 59
342435 TTAAGTGCAC
* *
342445 AAATGGTCCTCTGACTATATGATATTGTTTTATTAAGTCTATCGACTAGTAAAAGTTACA
1 AAATGATCCTTTGACTATA-GATATTGTTTTATTAAGTCTATCGACTAGTAAAAGTTACA
* *
342505 AAATGATCCTTTGACTATAGGATATTGTTTTATTAAGTCTTTCGACTAGTAAAAGTTACG
1 AAATGATCCTTTGACTATA-GATATTGTTTTATTAAGTCTATCGACTAGTAAAAGTTACA
* * * * * *
342565 AAATGATCTTTTGACCATAGAATGTTGTTTTGTTGAGTC-ACTCGACTATTAAAAG
1 AAATGATCCTTTGACTATAG-ATATTGTTTTATTAAGTCTA-TCGACTAGTAAAAG
342620 CTATAAATGG
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
59 1 0.01
60 100 0.99
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.39
Consensus pattern (59 bp):
AAATGATCCTTTGACTATAGATATTGTTTTATTAAGTCTATCGACTAGTAAAAGTTACA
Found at i:346595 original size:25 final size:26
Alignment explanation
Indices: 346522--346630 Score: 61
Period size: 21 Copynumber: 4.2 Consensus size: 26
346512 TTAGTCATAC
346522 TTTTAAATAAATTTTAACATTAAATATATAT
1 TTTTAAATAAA-TTT-ACA-TAAA-A-ATAT
346553 TTTTAAATAAA---A-AT-AAAATAT
1 TTTTAAATAAATTTACATAAAAATAT
346574 TTTTAAATAAATTTA-ATAAAAAAATAT
1 TTTTAAATAAATTTACAT--AAAAATAT
* * * *
346601 ATTT-AATAAGTTAATATAAAAATTAT
1 TTTTAAATAAATTTACATAAAAA-TAT
346627 TTTT
1 TTTT
346631 TAAGTTAAAA
Statistics
Matches: 66, Mismatches: 4, Indels: 21
0.73 0.04 0.23
Matches are distributed among these distances:
21 15 0.23
22 1 0.02
23 2 0.03
24 4 0.06
25 6 0.09
26 15 0.23
27 12 0.18
31 11 0.17
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (26 bp):
TTTTAAATAAATTTACATAAAAATAT
Found at i:346627 original size:24 final size:25
Alignment explanation
Indices: 346567--346638 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
346557 AAATAAAAAT
* *
346567 AAAATATTTTTAAATAAATTTAATAAA
1 AAAATATATTT-AAT-AAGTTAATAAA
*
346594 AAAATATATTTAATAAGTTAATATA
1 AAAATATATTTAATAAGTTAATAAA
**
346619 AAAAT-TATTTTTTAAGTTAA
1 AAAATATATTTAATAAGTTAA
346639 AATATATAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
24 13 0.32
25 14 0.35
26 3 0.08
27 10 0.25
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (25 bp):
AAAATATATTTAATAAGTTAATAAA
Found at i:346642 original size:26 final size:25
Alignment explanation
Indices: 346567--346652 Score: 75
Period size: 27 Copynumber: 3.3 Consensus size: 25
346557 AAATAAAAAT
* * *
346567 AAAATATTTTTAAATAAATTTAATAAA
1 AAAATATATTT-AAT-AAGTTAATATA
346594 AAAATATATTTAATAAGTTAATATA
1 AAAATATATTTAATAAGTTAATATA
**
346619 AAAAT-TATTTTTTAAGTTAAAATATA
1 AAAATATATTTAATAAGTT--AATATA
346645 TAAAATAT
1 -AAAATAT
346653 TATGAATTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
24 11 0.22
25 14 0.28
26 9 0.18
27 15 0.30
28 1 0.02
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (25 bp):
AAAATATATTTAATAAGTTAATATA
Found at i:347105 original size:27 final size:27
Alignment explanation
Indices: 347075--347130 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
347065 AAGGTAGTTT
* *
347075 AGTTTATGTATTAAAATAATATTAAAA
1 AGTTTATGTACTAAAATAACATTAAAA
*
347102 AGTTTATGTACTGAAATAACATTAAAA
1 AGTTTATGTACTAAAATAACATTAAAA
347129 AG
1 AG
347131 AAAAATGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.50, C:0.04, G:0.11, T:0.36
Consensus pattern (27 bp):
AGTTTATGTACTAAAATAACATTAAAA
Found at i:349216 original size:7 final size:7
Alignment explanation
Indices: 349204--349238 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
349194 CCTCTTTGGA
349204 AGATGGG
1 AGATGGG
349211 AGATGGG
1 AGATGGG
349218 AGATGGG
1 AGATGGG
349225 AGATGGG
1 AGATGGG
349232 AGATGGG
1 AGATGGG
349239 TAACGAAGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.57, T:0.14
Consensus pattern (7 bp):
AGATGGG
Found at i:349636 original size:18 final size:17
Alignment explanation
Indices: 349573--349636 Score: 52
Period size: 17 Copynumber: 4.1 Consensus size: 17
349563 TTAAAATAAT
349573 ATTA-ATTAAATTAAAA
1 ATTATATTAAATTAAAA
349589 ATTATATTGAAA-TAAAA
1 ATTATATT-AAATTAAAA
*
349606 A--ATATT---TTCAAA
1 ATTATATTAAATTAAAA
349618 ATTATAATTAAATTAAAA
1 ATTAT-ATTAAATTAAAA
349636 A
1 A
349637 ATATCCCTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
12 5 0.14
14 2 0.05
15 8 0.22
16 4 0.11
17 9 0.24
18 9 0.24
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (17 bp):
ATTATATTAAATTAAAA
Found at i:362430 original size:20 final size:20
Alignment explanation
Indices: 362405--362442 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
362395 TTTGGTTCAC
*
362405 GGAATATAAGATTACCAGTG
1 GGAATAAAAGATTACCAGTG
362425 GGAATAAAAGATTACCAG
1 GGAATAAAAGATTACCAG
362443 GGAATAGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.11, G:0.24, T:0.21
Consensus pattern (20 bp):
GGAATAAAAGATTACCAGTG
Found at i:362445 original size:18 final size:19
Alignment explanation
Indices: 362405--362448 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
362395 TTTGGTTCAC
*
362405 GGAATATAAGATTACCAGTG
1 GGAATAAAAGATTACCAG-G
362425 GGAATAAAAGATTACCA-G
1 GGAATAAAAGATTACCAGG
362443 GGAATA
1 GGAATA
362449 GATTACTGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
20 16 0.70
ACGTcount: A:0.45, C:0.09, G:0.25, T:0.20
Consensus pattern (19 bp):
GGAATAAAAGATTACCAGG
Found at i:372772 original size:20 final size:20
Alignment explanation
Indices: 372749--372800 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
372739 TAATAAAGGA
*
372749 AAAGAAAGGAAAGGAAAGCT
1 AAAGAAAGGAAAGGAAAGCC
* * *
372769 AAAGAAAAGAGAGGAAGGCC
1 AAAGAAAGGAAAGGAAAGCC
*
372789 AAAGACAGGAAA
1 AAAGAAAGGAAA
372801 TGACATTTAT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.60, C:0.08, G:0.31, T:0.02
Consensus pattern (20 bp):
AAAGAAAGGAAAGGAAAGCC
Found at i:376438 original size:29 final size:31
Alignment explanation
Indices: 376405--376486 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 31
376395 TGATTTTAAA
376405 AAAATTGAAAGTTTAGGTACTAAAAAAGA-T
1 AAAATTGAAAGTTTAGGTACTAAAAAAGACT
* * * *
376435 -AAATTG-ATGTTTAAGTATTAAAACAGACT
1 AAAATTGAAAGTTTAGGTACTAAAAAAGACT
*
376464 AAAACTT-ATAGTTTAGGTACTAA
1 AAAA-TTGAAAGTTTAGGTACTAA
376487 TTGCGTAGTT
Statistics
Matches: 40, Mismatches: 8, Indels: 7
0.73 0.15 0.13
Matches are distributed among these distances:
28 17 0.43
29 7 0.17
30 3 0.08
31 13 0.32
ACGTcount: A:0.48, C:0.06, G:0.15, T:0.32
Consensus pattern (31 bp):
AAAATTGAAAGTTTAGGTACTAAAAAAGACT
Found at i:376980 original size:23 final size:22
Alignment explanation
Indices: 376950--376995 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
376940 AAAAACTTAT
*
376950 ATTAAAAATTTAA-AGATATAAA
1 ATTAAAAATCTAATA-ATATAAA
376972 ATTATAAAATCTAATAATATAAA
1 ATTA-AAAATCTAATAATATAAA
376995 A
1 A
376996 CTGAAACAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 16 0.76
24 1 0.05
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (22 bp):
ATTAAAAATCTAATAATATAAA
Found at i:387582 original size:18 final size:18
Alignment explanation
Indices: 387559--387602 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
387549 ATATATATAC
*
387559 CATGCATATACATACATA
1 CATGCATATACATACACA
*
387577 CATGCATATACATACACG
1 CATGCATATACATACACA
387595 CATGCATA
1 CATGCATA
387603 GGATAGAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.41, C:0.25, G:0.09, T:0.25
Consensus pattern (18 bp):
CATGCATATACATACACA
Found at i:400816 original size:15 final size:16
Alignment explanation
Indices: 400796--400830 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
400786 GTGAAAGTGT
400796 AAAATT-TTCTAGCCA
1 AAAATTGTTCTAGCCA
*
400811 AAAATTGTTTTAGCCA
1 AAAATTGTTCTAGCCA
400827 AAAA
1 AAAA
400831 ATATTTTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (16 bp):
AAAATTGTTCTAGCCA
Found at i:400837 original size:16 final size:15
Alignment explanation
Indices: 400796--400838 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
400786 GTGAAAGTGT
400796 AAAATTTTCTAGCCAA
1 AAAATTTT-TAGCCAA
*
400812 AAATTGTTTTAGCCAA
1 AAAAT-TTTTAGCCAA
400828 AAAATATTTTA
1 AAAAT-TTTTA
400839 CTTAGGGGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 20 0.87
17 3 0.13
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37
Consensus pattern (15 bp):
AAAATTTTTAGCCAA
Found at i:401395 original size:20 final size:20
Alignment explanation
Indices: 401351--401397 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
401341 TTAATGATTC
*
401351 CAACGGCTCAAATCAATCCT
1 CAACGGCTCAAATCAATCAT
401371 CAACGGCTCAAATCAATCAT
1 CAACGGCTCAAATCAATCAT
*
401391 TAACGGC
1 CAACGGC
401398 ACCAAACAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.32, G:0.13, T:0.19
Consensus pattern (20 bp):
CAACGGCTCAAATCAATCAT
Found at i:402490 original size:30 final size:26
Alignment explanation
Indices: 402456--402512 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 26
402446 AAATAACTGT
402456 AAATATATTATTATTATTATTATTATTAAA
1 AAATATATTATT-TTA--ATTATT-TTAAA
402486 AAATATATTATTTTAATTATTTTAAA
1 AAATATATTATTTTAATTATTTTAAA
402512 A
1 A
402513 TATTAATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 6 0.22
27 6 0.22
29 3 0.11
30 12 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
AAATATATTATTTTAATTATTTTAAA
Found at i:402494 original size:24 final size:24
Alignment explanation
Indices: 402467--402515 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
402457 AATATATTAT
402467 TATTATTATT-ATTATTAAAAAATA
1 TATTATT-TTAATTATTAAAAAATA
**
402491 TATTATTTTAATTATTTTAAAATA
1 TATTATTTTAATTATTAAAAAATA
402515 T
1 T
402516 TAATATAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 2 0.09
24 20 0.91
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (24 bp):
TATTATTTTAATTATTAAAAAATA
Found at i:403382 original size:31 final size:32
Alignment explanation
Indices: 403347--403425 Score: 106
Period size: 32 Copynumber: 2.5 Consensus size: 32
403337 CTAACGTTTA
403347 TTTTTATTTCATTTTAATACCC-ACAATTAAC
1 TTTTTATTTCATTTTAATACCCAACAATTAAC
* * *
403378 TTTTTATTTCATCTTAGTACCCAACAGTTAAC
1 TTTTTATTTCATTTTAATACCCAACAATTAAC
* *
403410 TTTTTGTTTCAGTTTA
1 TTTTTATTTCATTTTA
403426 GTACTTAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
31 20 0.49
32 21 0.51
ACGTcount: A:0.27, C:0.18, G:0.05, T:0.51
Consensus pattern (32 bp):
TTTTTATTTCATTTTAATACCCAACAATTAAC
Found at i:404695 original size:21 final size:21
Alignment explanation
Indices: 404662--404701 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
404652 AGTCTAAATG
* *
404662 TACCAAGTGTTTTACTAAACA
1 TACCAAGTCTTTTAATAAACA
*
404683 TACCAATTCTTTTAATAAA
1 TACCAAGTCTTTTAATAAA
404702 ATAATAAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (21 bp):
TACCAAGTCTTTTAATAAACA
Found at i:406852 original size:42 final size:42
Alignment explanation
Indices: 406755--406882 Score: 148
Period size: 42 Copynumber: 3.0 Consensus size: 42
406745 AAAGCATAGG
* * *
406755 AACCTAGGAAAACCGTAAGGCTTACCCTTGCACACAGCACAAAAA
1 AACCT-GGGAAACTGTAAGGCTTACCCTTGCACACA--ACAAAGA
*
406800 AACCTGGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGG
1 AACCTGGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGA
* * * **
406842 GACTTGGGAAATTGTAAGGCTTACTTTTGCACACAACAAAG
1 AACCTGGGAAACTGTAAGGCTTACCCTTGCACACAACAAAG
406883 CTTACCTTTG
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
42 41 0.55
44 28 0.38
45 5 0.07
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.19
Consensus pattern (42 bp):
AACCTGGGAAACTGTAAGGCTTACCCTTGCACACAACAAAGA
Found at i:406885 original size:22 final size:22
Alignment explanation
Indices: 406860--406904 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
406850 AAATTGTAAG
*
406860 GCTTACTTTTGCACACAACAAA
1 GCTTACCTTTGCACACAACAAA
406882 GCTTACCTTTGCACACAACAAA
1 GCTTACCTTTGCACACAACAAA
406904 G
1 G
406905 GAACCTGAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.29, G:0.11, T:0.24
Consensus pattern (22 bp):
GCTTACCTTTGCACACAACAAA
Found at i:406922 original size:64 final size:64
Alignment explanation
Indices: 406818--406946 Score: 168
Period size: 64 Copynumber: 2.0 Consensus size: 64
406808 AAACTGTAAG
* * * * * **
406818 GCTTACCCTTGCACACAACAAAGGGACTTGGGAAATTGTAAGGCTTACTTTTGCACACAACAAA
1 GCTTACCCTTGCACACAACAAAGGAACCTGAGAAACTGTAAAGCTTACCCTTGCACACAACAAA
* * *
406882 GCTTACCTTTGCACACAACAAAGGAACCTGAGAAACTGTAAAGTTTACCCTTGCACACAGCAAA
1 GCTTACCCTTGCACACAACAAAGGAACCTGAGAAACTGTAAAGCTTACCCTTGCACACAACAAA
406946 G
1 G
406947 GAACCTGTGA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.22
Consensus pattern (64 bp):
GCTTACCCTTGCACACAACAAAGGAACCTGAGAAACTGTAAAGCTTACCCTTGCACACAACAAA
Found at i:406964 original size:106 final size:109
Alignment explanation
Indices: 406774--406989 Score: 303
Period size: 106 Copynumber: 2.0 Consensus size: 109
406764 AAACCGTAAG
* *
406774 GCTTACCCTTGCACACAGCACAAAAAAACCTGGGAAACTGTAAGGCTTACCCTTGCACACAACAA
1 GCTTACCCTTGCACACA-CACAAAAAAACCTGAGAAACTGTAAAGCTTACCCTTGCACACAACAA
* * *
406839 AGGGACTTGGGAAATTGTAAGGCTTA-CTTTT-GCACACAACAAA
65 AGGAACCTGGGAAACTGTAAGGCTTACCTTTTCGCACACAACAAA
* ** * *
406882 GCTTACCTTTGCACACA-ACAAAGGAACCTGAGAAACTGTAAAGTTTACCCTTGCACACAGCAAA
1 GCTTACCCTTGCACACACACAAAAAAACCTGAGAAACTGTAAAGCTTACCCTTGCACACAACAAA
*
406946 GGAACCTGTGAAACTGTAAGGCTTACCTTTTCGCACACAACAAA
66 GGAACCTGGGAAACTGTAAGGCTTACCTTTTCGCACACAACAAA
406990 AGGACCTGAG
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
106 62 0.65
107 5 0.05
108 28 0.29
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (109 bp):
GCTTACCCTTGCACACACACAAAAAAACCTGAGAAACTGTAAAGCTTACCCTTGCACACAACAAA
GGAACCTGGGAAACTGTAAGGCTTACCTTTTCGCACACAACAAA
Found at i:406997 original size:44 final size:42
Alignment explanation
Indices: 406879--407002 Score: 169
Period size: 42 Copynumber: 2.9 Consensus size: 42
406869 TGCACACAAC
406879 AAAGCTTACCTTTGCACACAACAAAGGAACCTGAGAAACTGT
1 AAAGCTTACCTTTGCACACAACAAAGGAACCTGAGAAACTGT
* * * *
406921 AAAGTTTACCCTTGCACACAGCAAAGGAACCTGTGAAACTGT
1 AAAGCTTACCTTTGCACACAACAAAGGAACCTGAGAAACTGT
*
406963 AAGGCTTACCTTTTCGCACACAACAAAAGG-ACCTGAGAAA
1 AAAGCTTACC-TTT-GCACACAAC-AAAGGAACCTGAGAAA
407003 TTTCCTTCAA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 46 0.66
43 2 0.03
44 17 0.24
45 5 0.07
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.19
Consensus pattern (42 bp):
AAAGCTTACCTTTGCACACAACAAAGGAACCTGAGAAACTGT
Found at i:407984 original size:28 final size:29
Alignment explanation
Indices: 407922--408052 Score: 205
Period size: 28 Copynumber: 4.6 Consensus size: 29
407912 CAGAAATTAA
*
407922 TTACAAAACTAACACCCTTTTTAAAAATAT
1 TTACGAAACTAACACCC-TTTTAAAAATAT
*
407952 TTACGAAATTAACACCCTTTT-AAAATAT
1 TTACGAAACTAACACCCTTTTAAAAATAT
407980 TTACGAAACTAACA-CCTTTTAAAAATAT
1 TTACGAAACTAACACCCTTTTAAAAATAT
*
408008 TTACGAAACTCACACCC-TTTAAAAATAT
1 TTACGAAACTAACACCCTTTTAAAAATAT
408036 TTACGAAACTAACACCC
1 TTACGAAACTAACACCC
408053 GAGTCAACGA
Statistics
Matches: 94, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
27 6 0.06
28 67 0.71
29 6 0.06
30 15 0.16
ACGTcount: A:0.44, C:0.22, G:0.03, T:0.31
Consensus pattern (29 bp):
TTACGAAACTAACACCCTTTTAAAAATAT
Found at i:412742 original size:17 final size:17
Alignment explanation
Indices: 412720--412753 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
412710 AATTTTGGAT
*
412720 ATATATATATATTATTA
1 ATATATATATAATATTA
412737 ATATATATATAATATTA
1 ATATATATATAATATTA
412754 TAATTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATATATATAATATTA
Found at i:423017 original size:20 final size:22
Alignment explanation
Indices: 422987--423030 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
422977 TATAATTATG
422987 AAAAAATATATTATATACCCTT
1 AAAAAATATATTATATACCCTT
423009 AAAAAATATATTATATACCCTT
1 AAAAAATATATTATATACCCTT
423031 TTTGATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAAAATATATTATATACCCTT
Found at i:423836 original size:45 final size:45
Alignment explanation
Indices: 423745--423950 Score: 191
Period size: 45 Copynumber: 4.4 Consensus size: 45
423735 ACCTCCAACT
* * * *
423745 TATGAACCACCAAAGAAAGAGAAACCTGAGCCTAAGCCTAAGCCACCTGTC
1 TATGAACCACCAAAGAAAGAGAAGCCT--G---AA-CCCAAACCACCGGTC
*
423796 TATGAACCTCCAAAGAAAGAGAAGCCTGAACCCAAACCACCGGTC
1 TATGAACCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCGGTC
* * ** * *
423841 TATGAACCTCCAAAG-AAGCCACCAACGTATGAACCTAAACCACCGGTT
1 TATGAACCACCAAAGAAAG--A-GAA-GCCTGAACCCAAACCACCGGTC
*
423889 TAT-ACACCACCGAAGAAAGAGAAGCCTGAACCCAAACCACCGGTC
1 TATGA-ACCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCGGTC
423934 TATGAACCACCAAAGAA
1 TATGAACCACCAAAGAA
423951 GCCTCCAACG
Statistics
Matches: 130, Mismatches: 18, Indels: 20
0.77 0.11 0.12
Matches are distributed among these distances:
44 3 0.02
45 59 0.45
46 6 0.05
47 4 0.03
48 29 0.22
49 4 0.03
51 25 0.19
ACGTcount: A:0.40, C:0.31, G:0.17, T:0.13
Consensus pattern (45 bp):
TATGAACCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCGGTC
Found at i:423905 original size:48 final size:48
Alignment explanation
Indices: 423822--423965 Score: 163
Period size: 48 Copynumber: 3.1 Consensus size: 48
423812 AAGAGAAGCC
*
423822 TGAACCCAAACCACCGGTCTATGAACCTCCAAAGAAGCCACCAACGTA
1 TGAACCCAAACCACCGGTCTATGAACCACCAAAGAAGCCACCAACGTA
* * * * **
423870 TGAACCTAAACCACCGGTTTAT-ACACCACCGAAGAAAG--A-GAA-GCC
1 TGAACCCAAACCACCGGTCTATGA-ACCACCAAAG-AAGCCACCAACGTA
*
423915 TGAACCCAAACCACCGGTCTATGAACCACCAAAGAAGCCTCCAACGTA
1 TGAACCCAAACCACCGGTCTATGAACCACCAAAGAAGCCACCAACGTA
423963 TGA
1 TGA
423966 GCCTAAGCCA
Statistics
Matches: 75, Mismatches: 14, Indels: 14
0.73 0.14 0.14
Matches are distributed among these distances:
44 3 0.04
45 30 0.40
46 3 0.04
47 4 0.05
48 32 0.43
49 3 0.04
ACGTcount: A:0.38, C:0.33, G:0.16, T:0.13
Consensus pattern (48 bp):
TGAACCCAAACCACCGGTCTATGAACCACCAAAGAAGCCACCAACGTA
Found at i:423907 original size:93 final size:98
Alignment explanation
Indices: 423784--424248 Score: 519
Period size: 93 Copynumber: 4.8 Consensus size: 98
423774 GCCTAAGCCT
* * * *
423784 AAGCCACCTGTCTATGA-ACCTCCAAAGAAAGAGAAGCCTGAACCCAAACCACCGGTCTATGAAC
1 AAGCCACCAGTCTAT-ACACCACCGAAGAAAGAGAAGCCTGAACCCAAACCACCAGTCTATGAAC
*
423848 CTCCAAAGAAGCCACCAACGTAT-G-AA-C-CTA
65 CTCCAAAGAAGCCACCAACGTATAGCAACCACCA
* * *
423878 AA-CCACCGGTTTATACACCACCGAAGAAAGAGAAGCCTGAACCCAAACCACCGGTCTATGAACC
1 AAGCCACCAGTCTATACACCACCGAAGAAAGAGAAGCCTGAACCCAAACCACCAGTCTATGAACC
* *
423942 ACCAAAGAAGCCTCCAACGTATGAGCCTAAGCCACCA
66 TCCAAAGAAGCCACCAACGTAT-AG-C-AA-CCACCA
* * * * *
423979 AAGCCACCAGTTTATGCACCACCGAAGAAAGAGAAACCTGAACCCAAACCCCCAGTCTATGAGGC
1 AAGCCACCAGTCTATACACCACCGAAGAAAGAGAAGCCTGAACCCAAACCACCAGTCTATGA-AC
424044 C-CCAAAGAAGCCACCAACGTATGAGCCTAAGCCACCA
65 CTCCAAAGAAGCCACCAACGTAT-AG-C-AA-CCACCA
* * * *
424081 AAGCCACCAGTCTATACACCACCG-A-AAAGAAAAGCCTGAACCAAAACCACCAGTCTATGAGCA
1 AAGCCACCAGTCTATACACCACCGAAGAAAGAGAAGCCTGAACCCAAACCACCAGTCTATGAACC
*
424144 TCCAAAGAAGCCTCCAACGTAT-G--A--ACCA
66 TCCAAAGAAGCCACCAACGTATAGCAACCACCA
* * *
424172 AAGCCACCAGTCTATACACCACCAAAGAAAGAGAAACCTGAACCCAAACCACCAGTCCATGAGA-
1 AAGCCACCAGTCTATACACCACCGAAGAAAGAGAAGCCTGAACCCAAACCACCAGTCTATGA-AC
424236 CTCCAAAGAAGCC
65 CTCCAAAGAAGCC
424249 TCCAGTGTAT
Statistics
Matches: 327, Mismatches: 29, Indels: 31
0.84 0.07 0.08
Matches are distributed among these distances:
91 27 0.08
92 2 0.01
93 119 0.36
94 3 0.01
95 1 0.00
98 3 0.01
99 2 0.01
100 52 0.16
101 5 0.02
102 111 0.34
103 2 0.01
ACGTcount: A:0.39, C:0.33, G:0.16, T:0.12
Consensus pattern (98 bp):
AAGCCACCAGTCTATACACCACCGAAGAAAGAGAAGCCTGAACCCAAACCACCAGTCTATGAACC
TCCAAAGAAGCCACCAACGTATAGCAACCACCA
Found at i:424004 original size:102 final size:103
Alignment explanation
Indices: 423880--424263 Score: 496
Period size: 102 Copynumber: 3.9 Consensus size: 103
423870 TGAACCTAAA
* * * *
423880 CCACCGGTTTATACACCACCGAAGAAAGAGAAGCCTGAACCCAAACCACCGGTCTATGA-ACCAC
1 CCACCAGTCTATACACCACCGAAGAAAGAGAAACCTGAACCCAAACCACCAGTCTATGAGACCAC
423944 CAAAGAAGCCTCCAACGTATGAGCCTAAGCCACCAAAG
66 CAAAGAAGCCTCCAACGTATGAGCCTAAGCCACCAAAG
* * * *
423982 CCACCAGTTTATGCACCACCGAAGAAAGAGAAACCTGAACCCAAACCCCCAGTCTATGAGGCC-C
1 CCACCAGTCTATACACCACCGAAGAAAGAGAAACCTGAACCCAAACCACCAGTCTATGAGACCAC
*
424046 CAAAGAAGCCACCAACGTATGAGCCTAAGCCACCAAAG
66 CAAAGAAGCCTCCAACGTATGAGCCTAAGCCACCAAAG
*
424084 CCACCAGTCTATACACCACCG-A-AAAGA-AAAGCCTGAACCAAAACCACCAGTCTATGAG--CA
1 CCACCAGTCTATACACCACCGAAGAAAGAGAAA-CCTGAACCCAAACCACCAGTCTATGAGACCA
424144 TCCAAAGAAGCCTCCAACGTAT--G----A---ACCAAAG
65 -CCAAAGAAGCCTCCAACGTATGAGCCTAAGCCACCAAAG
* * *
424175 CCACCAGTCTATACACCACCAAAGAAAGAGAAACCTGAACCCAAACCACCAGTCCATGAGA-CTC
1 CCACCAGTCTATACACCACCGAAGAAAGAGAAACCTGAACCCAAACCACCAGTCTATGAGACCAC
**
424239 CAAAGAAGCCTCCAGTGTATGAGCC
66 CAAAGAAGCCTCCAACGTATGAGCC
424264 ACCTTATGGT
Statistics
Matches: 252, Mismatches: 18, Indels: 29
0.84 0.06 0.10
Matches are distributed among these distances:
91 27 0.11
92 1 0.00
93 49 0.19
94 5 0.02
95 1 0.00
98 2 0.01
99 3 0.01
100 50 0.20
101 1 0.00
102 111 0.44
103 2 0.01
ACGTcount: A:0.39, C:0.33, G:0.16, T:0.12
Consensus pattern (103 bp):
CCACCAGTCTATACACCACCGAAGAAAGAGAAACCTGAACCCAAACCACCAGTCTATGAGACCAC
CAAAGAAGCCTCCAACGTATGAGCCTAAGCCACCAAAG
Found at i:424197 original size:48 final size:44
Alignment explanation
Indices: 424077--424228 Score: 123
Period size: 48 Copynumber: 3.4 Consensus size: 44
424067 AGCCTAAGCC
* *
424077 ACCAAAGCCACCAGTCTATACACCACCGAA-AAGAAAAGCCTGA
1 ACCAAAGCCACCAGTCTATACACCACCAAAGAAGAAAAGCATGA
* * * * * *
424120 ACCAAAACCACCAGTCTAT-GAGCATCCAAAGAAGCCTCCAACGTATGA
1 ACCAAAGCCACCAGTCTATACACCA-CCAAAGAAG----AAAAGCATGA
*
424168 ACCAAAGCCACCAGTCTATACACCACCAAAGAAAGAGAAA-CCTGA
1 ACCAAAGCCACCAGTCTATACACCACCAAAG-AAGA-AAAGCATGA
424213 ACCCAAA-CCACCAGTC
1 A-CCAAAGCCACCAGTC
424229 CATGAGACTC
Statistics
Matches: 84, Mismatches: 15, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
42 3 0.04
43 22 0.26
44 3 0.04
45 13 0.15
46 7 0.08
48 30 0.36
49 6 0.07
ACGTcount: A:0.43, C:0.34, G:0.13, T:0.11
Consensus pattern (44 bp):
ACCAAAGCCACCAGTCTATACACCACCAAAGAAGAAAAGCATGA
Found at i:431141 original size:45 final size:45
Alignment explanation
Indices: 431056--431440 Score: 278
Period size: 45 Copynumber: 8.2 Consensus size: 45
431046 TACTTACGAG
* * * * * * *
431056 CCACCAAAGAAAGAGAAACCCGAGCCTAAGCCCCCGGTCTATGAA
1 CCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCTGTCTATGAA
*
431101 CCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCTGTCTATGAG
1 CCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCTGTCTATGAA
* * * *
431146 CC-CCAAAGAAAGATAAACCTGAGCCTAAACCACCTGTCTATGAA
1 CCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCTGTCTATGAA
* *
431190 CCACCAAAGAAAGAGAAACCTGAGCCCAAACCACCTGTCTATG-A
1 CCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCTGTCTATGAA
* * * * *
431234 GCATCCAAAGAAGCCACCGACGTATGAGCCTAAACCACCAAAGCCACCGGTTTA-CACA
1 CCA-CCAAAGAA---A--GA-G-A--AGCCTGAA-C-CCAAA-CCACCTGTCTATGA-A
*
431292 CCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCCGTCTATGAGA
1 CCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCTGTCTATGA-A
* ** ** * * *
431338 -CTCCAAAG-AAGCCTCCAACGTATGAACCTAAACCACCAGTTTAT-ACA
1 CCACCAAAGAAAG---AGAA-GCCTGAACCCAAACCACCTGTCTATGA-A
*
431385 CCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCAGTCTATGAA
1 CCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCTGTCTATGAA
*
431430 CCTCCAAAGAA
1 CCACCAAAGAA
431441 GCCACCAACA
Statistics
Matches: 271, Mismatches: 45, Indels: 48
0.74 0.12 0.13
Matches are distributed among these distances:
44 45 0.17
45 133 0.49
46 10 0.04
47 5 0.02
48 35 0.13
49 3 0.01
50 3 0.01
51 2 0.01
52 3 0.01
54 6 0.02
55 1 0.00
56 5 0.02
57 17 0.06
58 3 0.01
ACGTcount: A:0.40, C:0.32, G:0.16, T:0.12
Consensus pattern (45 bp):
CCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCTGTCTATGAA
Found at i:431359 original size:102 final size:101
Alignment explanation
Indices: 431189--431476 Score: 398
Period size: 93 Copynumber: 2.9 Consensus size: 101
431179 CTGTCTATGA
* * * *
431189 ACCACCAAAGAAAGAGAAACCTGAGCCCAAACCACCTGTCTATGAG-CATCCAAAGAAGCCACCG
1 ACCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCAGTCTATGAGAC-TCCAAAGAAGCCACCA
431253 ACGTATGAGCCTAAACCACCAAAGCCACCGGTTTACAC
65 ACGTATGAGCCTAAACCACCAAAGCCACC-GTTTACAC
* *
431291 ACCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCCGTCTATGAGACTCCAAAGAAGCCTCCAA
1 ACCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCAGTCTATGAGACTCCAAAGAAGCCACCAA
* *
431356 CGTATGAACCT-AA--ACC--A-CCA--GTTTATAC
66 CGTATGAGCCTAAACCACCAAAGCCACCGTTTACAC
431384 ACCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCAGTCTATGA-ACCTCCAAAGAAGCCACCA
1 ACCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCAGTCTATGAGA-CTCCAAAGAAGCCACCA
*
431448 ACATATGAGCCTAAACCACCAAAGCCACC
65 ACGTATGAGCCTAAACCACCAAAGCCACC
431477 AGTCTATGAG
Statistics
Matches: 165, Mismatches: 11, Indels: 21
0.84 0.06 0.11
Matches are distributed among these distances:
92 1 0.01
93 77 0.47
94 2 0.01
96 6 0.04
97 1 0.01
98 1 0.01
99 6 0.04
101 2 0.01
102 68 0.41
103 1 0.01
ACGTcount: A:0.40, C:0.34, G:0.15, T:0.11
Consensus pattern (101 bp):
ACCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCAGTCTATGAGACTCCAAAGAAGCCACCAA
CGTATGAGCCTAAACCACCAAAGCCACCGTTTACAC
Found at i:431371 original size:48 final size:47
Alignment explanation
Indices: 431312--431665 Score: 145
Period size: 48 Copynumber: 7.1 Consensus size: 47
431302 AAGAGAAGCC
*
431312 TGAACCCAAACCACCCGTCTATGAGA-CTCCAAAGAAGCCTCCAACGTA
1 TGAACCCAAACCACCAGTCTATGA-ACCTCCAAAGAAGCC-CCAACGTA
* * * ** **
431360 TGAACCTAAACCACCAGTTTAT-ACACCACCAAAGAAAG--AGAA-GCC
1 TGAACCCAAACCACCAGTCTATGA-ACCTCCAAAG-AAGCCCCAACGTA
*
431405 TGAACCCAAACCACCAGTCTATGAACCTCCAAAGAAGCCACCAACATA
1 TGAACCCAAACCACCAGTCTATGAACCTCCAAAGAAGCC-CCAACGTA
* * *
431453 TGAGCCTAAACCACCAAAGCCACCAGTCTATGAGCATCCAAAGAAACCACCAACGTA
1 T--G----AA-C-CCAAA-CCACCAGTCTATGAACCTCCAAAGAAGCC-CCAACGTA
* *** *
431510 TGAGCCTAAGCCACCAAAGCCACCAGTCTAT-ACACCACCAAAGAGAG-AGAAAC--C
1 T--G---AA--C-CCAAA-CCACCAGTCTATGA-ACCTCCAAAGA-AGCCCCAACGTA
*
431564 TGAACCCAAACCACCGGTCTATGAGA-CTCCAAAGAAGCCTCCAACGTA
1 TGAACCCAAACCACCAGTCTATGA-ACCTCCAAAGAAGCC-CCAACGTA
* * * * **
431612 TGAGCCTAAGCCACCGGTCTATGAGA-CTCCAAAGAAGCCTCCAGTGTA
1 TGAACCCAAACCACCAGTCTATGA-ACCTCCAAAGAAGCC-CCAACGTA
431660 TGAACC
1 TGAACC
431666 ACCTTATGGT
Statistics
Matches: 238, Mismatches: 44, Indels: 48
0.72 0.13 0.15
Matches are distributed among these distances:
44 5 0.02
45 49 0.21
46 13 0.05
47 5 0.02
48 75 0.32
49 5 0.02
50 1 0.00
52 1 0.00
54 3 0.01
55 1 0.00
56 12 0.05
57 67 0.28
58 1 0.00
ACGTcount: A:0.38, C:0.33, G:0.16, T:0.14
Consensus pattern (47 bp):
TGAACCCAAACCACCAGTCTATGAACCTCCAAAGAAGCCCCAACGTA
Found at i:431438 original size:195 final size:191
Alignment explanation
Indices: 431100--431476 Score: 551
Period size: 195 Copynumber: 2.0 Consensus size: 191
431090 CGGTCTATGA
* *
431100 ACCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCTGTCTATGAGCCCCAAAGAAAGATAAACC
1 ACCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCCGTCTATGAGCCCCAAAGAAAGATAAACA
* * * *
431165 TGAGCCTAAACCACCTGTCTATGAACCACCAAAGAAAGAGAAACCTGAGCCCAAACCACCTGTCT
66 TGAACCTAAACCACCAGTCTATGAACCACCAAAGAAAGAGAAACCTGAACCCAAACCACCAGTCT
* * *
431230 ATGAGCATCCAAAGAAGCCACCGACGTATGAGCCTAAACCACCAAAGCCACCGGTTTACAC
131 ATGAACATCCAAAGAAGCCACCAACATATGAGCCTAAACCACCAAAGCCACCGGTTTACAC
* * *
431291 ACCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCCGTCTATGAGACTCCAAAG-AAGCCTCCA
1 ACCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCCGTCTATGAG-CCCCAAAGAAAG-AT-AA
* *
431355 ACGTATGAACCTAAACCACCAGTTTAT-ACACCACCAAAGAAAGAGAAGCCTGAACCCAAACCAC
63 AC--ATGAACCTAAACCACCAGTCTATGA-ACCACCAAAGAAAGAGAAACCTGAACCCAAACCAC
*
431419 CAGTCTATGAACCTCCAAAGAAGCCACCAACATATGAGCCTAAACCACCAAAGCCACC
125 CAGTCTATGAACATCCAAAGAAGCCACCAACATATGAGCCTAAACCACCAAAGCCACC
431477 AGTCTATGAG
Statistics
Matches: 165, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
191 48 0.29
192 8 0.05
193 3 0.02
194 1 0.01
195 105 0.64
ACGTcount: A:0.40, C:0.33, G:0.15, T:0.12
Consensus pattern (191 bp):
ACCACCAAAGAAAGAGAAGCCTGAACCCAAACCACCCGTCTATGAGCCCCAAAGAAAGATAAACA
TGAACCTAAACCACCAGTCTATGAACCACCAAAGAAAGAGAAACCTGAACCCAAACCACCAGTCT
ATGAACATCCAAAGAAGCCACCAACATATGAGCCTAAACCACCAAAGCCACCGGTTTACAC
Found at i:431474 original size:30 final size:29
Alignment explanation
Indices: 431439--431534 Score: 83
Period size: 30 Copynumber: 3.3 Consensus size: 29
431429 ACCTCCAAAG
431439 AAGCCACCAACATATGAGCCTAAACCACCA
1 AAGCCACCAAC-TATGAGCCTAAACCACCA
* * *
431469 AAGCCACCAGTCTATGAG-C--ATCCA-AA
1 AAGCCACCA-ACTATGAGCCTAAACCACCA
* *
431495 GAAACCACCAACGTATGAGCCTAAGCCACCA
1 -AAGCCACCAAC-TATGAGCCTAAACCACCA
431526 AAGCCACCA
1 AAGCCACCA
431535 GTCTATACAC
Statistics
Matches: 51, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
26 2 0.04
27 18 0.35
28 1 0.02
29 1 0.02
30 27 0.53
31 2 0.04
ACGTcount: A:0.41, C:0.35, G:0.14, T:0.10
Consensus pattern (29 bp):
AAGCCACCAACTATGAGCCTAAACCACCA
Found at i:431476 original size:57 final size:57
Alignment explanation
Indices: 431410--431553 Score: 211
Period size: 57 Copynumber: 2.5 Consensus size: 57
431400 AAGCCTGAAC
*
431410 CCAAA-CCACCAGTCTATGAACCTCCAAAGAAGCCACCAACATATGAGCCTAAACCA
1 CCAAAGCCACCAGTCTATGAACCTCCAAAGAAACCACCAACATATGAGCCTAAACCA
* * * *
431466 CCAAAGCCACCAGTCTATGAGCATCCAAAGAAACCACCAACGTATGAGCCTAAGCCA
1 CCAAAGCCACCAGTCTATGAACCTCCAAAGAAACCACCAACATATGAGCCTAAACCA
*
431523 CCAAAGCCACCAGTCTAT-ACACCACCAAAGA
1 CCAAAGCCACCAGTCTATGA-ACCTCCAAAGA
431554 GAGAGAAACC
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
56 6 0.08
57 72 0.92
ACGTcount: A:0.40, C:0.35, G:0.12, T:0.12
Consensus pattern (57 bp):
CCAAAGCCACCAGTCTATGAACCTCCAAAGAAACCACCAACATATGAGCCTAAACCA
Found at i:431661 original size:27 final size:27
Alignment explanation
Indices: 431583--431662 Score: 64
Period size: 27 Copynumber: 3.2 Consensus size: 27
431573 ACCACCGGTC
**
431583 TATGAGACTCCAAAGAAGCCTCCAACG
1 TATGAGACTCCAAAGAAGCCTCCAGTG
* * * *
431610 TATGAG---CC---TAAGCCACCGGTC
1 TATGAGACTCCAAAGAAGCCTCCAGTG
431631 TATGAGACTCCAAAGAAGCCTCCAGTG
1 TATGAGACTCCAAAGAAGCCTCCAGTG
431658 TATGA
1 TATGA
431663 ACCACCTTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 12
0.63 0.17 0.20
Matches are distributed among these distances:
21 13 0.35
24 4 0.11
27 20 0.54
ACGTcount: A:0.33, C:0.28, G:0.21, T:0.19
Consensus pattern (27 bp):
TATGAGACTCCAAAGAAGCCTCCAGTG
Found at i:432540 original size:2 final size:2
Alignment explanation
Indices: 432533--432568 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
432523 TTGCTGATCA
432533 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
432569 CACACAAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:445125 original size:31 final size:31
Alignment explanation
Indices: 445087--445146 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
445077 TTCAATGGTC
445087 GAATTATTACAAAATAATTA-TTAAACTTAGT
1 GAATTATTACAAAATAA-TAGTTAAACTTAGT
**
445118 GAATTATTACAACGTAATAGTTAAACTTA
1 GAATTATTACAAAATAATAGTTAAACTTA
445147 CTAAAGTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 2 0.08
31 24 0.92
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (31 bp):
GAATTATTACAAAATAATAGTTAAACTTAGT
Found at i:445318 original size:59 final size:59
Alignment explanation
Indices: 445186--445362 Score: 155
Period size: 59 Copynumber: 3.0 Consensus size: 59
445176 TTGCATCACC
* * * * **
445186 TCTTAAAATTATGACTATCGTTTTAAATTAGTCCCTAAACTTTTAAAGGTTCTCATTTCA
1 TCTTCAAATTATGACTATCATTCTAAATTAGTCCCTAAACTTTTGAACATT-TCATTTCA
* * * * *
445246 TC-CCTAAA-CATGACTATCATTCTAAATTTGTCCTTAAACTTTTGAACATTTCATTTTA
1 TCTTC-AAATTATGACTATCATTCTAAATTAGTCCCTAAACTTTTGAACATTTCATTTCA
* **
445304 TCTTCAAATTATGACCT-TCA-TCCAAATCGGTCCCTAAACTTTTTGAACATTTCAATTTC
1 TCTTCAAATTATGA-CTATCATTCTAAATTAGTCCCTAAAC-TTTTGAACATTTC-ATTTC
445363 GTCCCAAACT
Statistics
Matches: 93, Mismatches: 18, Indels: 12
0.76 0.15 0.10
Matches are distributed among these distances:
58 27 0.29
59 55 0.59
60 11 0.12
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.42
Consensus pattern (59 bp):
TCTTCAAATTATGACTATCATTCTAAATTAGTCCCTAAACTTTTGAACATTTCATTTCA
Found at i:448317 original size:6 final size:6
Alignment explanation
Indices: 448306--448655 Score: 672
Period size: 6 Copynumber: 59.0 Consensus size: 6
448296 CAGGTATACC
448306 CATATA CATATA CATATA C--ATA CATATA CATATA C--ATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
448350 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
448398 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
448446 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
448494 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
448542 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
448590 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
448638 CATATA CATATA CATATA
1 CATATA CATATA CATATA
448656 AAGTGTAAAA
Statistics
Matches: 340, Mismatches: 0, Indels: 8
0.98 0.00 0.02
Matches are distributed among these distances:
4 8 0.02
6 332 0.98
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
CATATA
Found at i:456307 original size:16 final size:16
Alignment explanation
Indices: 456286--456316 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
456276 TCATGGACAA
*
456286 AATTTCGCTATTCACG
1 AATTTCACTATTCACG
456302 AATTTCACTATTCAC
1 AATTTCACTATTCAC
456317 TTGAATAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.26, G:0.06, T:0.39
Consensus pattern (16 bp):
AATTTCACTATTCACG
Found at i:456614 original size:41 final size:41
Alignment explanation
Indices: 456569--456651 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
456559 AAATACTTAT
456569 TACTCACAAGAAAGCTCTCTAGTATTGGGAGAAAGAAATTA
1 TACTCACAAGAAAGCTCTCTAGTATTGGGAGAAAGAAATTA
456610 TACTCACAAGAAAGCTCTCTAGTATTGGGAGAAAGAAATTA
1 TACTCACAAGAAAGCTCTCTAGTATTGGGAGAAAGAAATTA
456651 T
1 T
456652 TTGAGGGATG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.25
Consensus pattern (41 bp):
TACTCACAAGAAAGCTCTCTAGTATTGGGAGAAAGAAATTA
Found at i:459071 original size:35 final size:36
Alignment explanation
Indices: 459001--459072 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
458991 GTTGGAAAAT
* * *
459001 ATTTATATATTTTCTTTAAAAATTTAAATTCATAAA
1 ATTTATATAATTTCTTTAAAAATTAAAAATCATAAA
459037 ATTTATATAATTT-TTTACAAAATTAAAAAT-ATAAA
1 ATTTATATAATTTCTTTA-AAAATTAAAAATCATAAA
459072 A
1 A
459073 AGGTTTAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
35 10 0.31
36 22 0.69
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (36 bp):
ATTTATATAATTTCTTTAAAAATTAAAAATCATAAA
Found at i:459109 original size:14 final size:14
Alignment explanation
Indices: 459090--459118 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
459080 ATGAAATTCT
459090 AAAATTTTATTTTA
1 AAAATTTTATTTTA
459104 AAAATTTTATTTTA
1 AAAATTTTATTTTA
459118 A
1 A
459119 CCCCTGAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
AAAATTTTATTTTA
Found at i:460236 original size:21 final size:22
Alignment explanation
Indices: 460212--460252 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
460202 CTGGCTAGAT
*
460212 TTAAA-ATTATATATTTTTTAC
1 TTAAAGATAATATATTTTTTAC
*
460233 TTAAAGATAATTTATTTTTT
1 TTAAAGATAATATATTTTTT
460253 TTGTAATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (22 bp):
TTAAAGATAATATATTTTTTAC
Found at i:470022 original size:31 final size:31
Alignment explanation
Indices: 469944--470024 Score: 128
Period size: 31 Copynumber: 2.6 Consensus size: 31
469934 TGGTTTTGAA
* *
469944 AAAATTGGA-AGTTTAGATATTAGAATAGACT
1 AAAATT-GATAGTTTAGGTATTAGAACAGACT
469975 AAAATTGATAGTTTAGGTATTAGAACAGACT
1 AAAATTGATAGTTTAGGTATTAGAACAGACT
470006 AAAATTGATAGTTTAGGTA
1 AAAATTGATAGTTTAGGTA
470025 CTAAACGCGT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
30 2 0.04
31 45 0.96
ACGTcount: A:0.43, C:0.04, G:0.20, T:0.33
Consensus pattern (31 bp):
AAAATTGATAGTTTAGGTATTAGAACAGACT
Found at i:483111 original size:12 final size:12
Alignment explanation
Indices: 483088--483119 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
483078 ACCCCGATTA
483088 CCCGATTATCCGG
1 CCCGA-TATCCGG
483101 CCCGATATCCGG
1 CCCGATATCCGG
483113 CCCGATA
1 CCCGATA
483120 AATATTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.41, G:0.22, T:0.19
Consensus pattern (12 bp):
CCCGATATCCGG
Found at i:483185 original size:2 final size:2
Alignment explanation
Indices: 483178--483217 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
483168 TAAATTTAAA
* *
483178 AT AT AT AT AT AT AT AT AT AT AT A- AT TT AA AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
483218 CTCAGCCCGA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:483404 original size:22 final size:22
Alignment explanation
Indices: 483376--483421 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
483366 GAGGACCAAT
483376 ACCCGGCCCGTTGCCATCCCTA
1 ACCCGGCCCGTTGCCATCCCTA
483398 ACCCGGCCCGTTGCCATCCCTA
1 ACCCGGCCCGTTGCCATCCCTA
483420 AC
1 AC
483422 ATGAAGTACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.15, C:0.50, G:0.17, T:0.17
Consensus pattern (22 bp):
ACCCGGCCCGTTGCCATCCCTA
Found at i:484218 original size:2 final size:2
Alignment explanation
Indices: 484213--484239 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
484203 TCTCTCTCTC
484213 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
484240 GTTATTTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:488222 original size:10 final size:10
Alignment explanation
Indices: 488211--488243 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
488201 GGAAACACAC
488211 ACACATAC--
1 ACACATACAA
488219 ACACATACAA
1 ACACATACAA
488229 ACACATACAA
1 ACACATACAA
488239 ACACA
1 ACACA
488244 CGCTTGAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.35
10 15 0.65
ACGTcount: A:0.58, C:0.33, G:0.00, T:0.09
Consensus pattern (10 bp):
ACACATACAA
Found at i:495897 original size:227 final size:226
Alignment explanation
Indices: 495496--495941 Score: 770
Period size: 227 Copynumber: 2.0 Consensus size: 226
495486 GTAAATTATC
* * *
495496 TATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
**
495561 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
66 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
495626 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
131 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATG-AACACTATTAAAAAAATTG
495691 AAACATAAATTACATAACTTTCAAAAAAGTATA
195 AAACATAAATTACATAACTTT-AAAAAAGTATA
*
495724 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATTATTATATTTAG
*
495789 TTAATATTGTTAAATTTAAATTCTAAATAATA-TTTATAAAATATCAAAAC-ATCAAATAAAATT
65 TTAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATT
* *
495852 TTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAACACTATTAAATAAATTG
130 TTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAACACTATTAAAAAAATTG
495917 AAACATAAATTACATAACTTTAAAA
195 AAACATAAATTACATAACTTTAAAA
495942 GCAGTTTTAA
Statistics
Matches: 208, Mismatches: 9, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
225 4 0.02
226 39 0.19
227 56 0.27
228 54 0.26
229 55 0.26
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.39
Consensus pattern (226 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAAATTT
TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAACACTATTAAAAAAATTGA
AACATAAATTACATAACTTTAAAAAAGTATA
Found at i:496031 original size:20 final size:19
Alignment explanation
Indices: 496008--496052 Score: 72
Period size: 20 Copynumber: 2.3 Consensus size: 19
495998 GATATACCAT
496008 GTAAAAATATGATAAAACCG
1 GTAAAAA-ATGATAAAACCG
496028 GTAACAAAATGATAAAACCG
1 GTAA-AAAATGATAAAACCG
496048 GTAAA
1 GTAAA
496053 TTTAAAAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 20 0.83
21 3 0.12
ACGTcount: A:0.56, C:0.11, G:0.16, T:0.18
Consensus pattern (19 bp):
GTAAAAAATGATAAAACCG
Found at i:496197 original size:20 final size:19
Alignment explanation
Indices: 496174--496220 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
496164 CGATATAACA
496174 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
496194 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
496214 GGTAAAA
1 GGTAAAA
496221 TGATACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:496222 original size:17 final size:18
Alignment explanation
Indices: 496178--496225 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 18
496168 ATAACAGGTA
496178 AAAATATGATAAAACCGGT
1 AAAA-ATGATAAAACCGGT
496197 AACAAAATGATAAAACCGGT
1 -A-AAAATGATAAAACCGGT
496217 -AAAATGATA
1 AAAAATGATA
496226 CCGGATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 9 0.33
20 15 0.56
21 3 0.11
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.19
Consensus pattern (18 bp):
AAAAATGATAAAACCGGT
Found at i:498497 original size:21 final size:21
Alignment explanation
Indices: 498450--498514 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
498440 AAGACAATCA
* *
498450 AGAGTCGAAGAGAAACTTGATC
1 AGAGTCGAAGAGAAACTCGA-G
*
498472 A-AGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
* *
498492 AGAGTCGAAGATACACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
498513 AG
1 AG
498515 GCATAAGGGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTCGAG
Found at i:498590 original size:33 final size:33
Alignment explanation
Indices: 498548--498613 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
498538 AAATAGATGG
*
498548 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
498581 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
498614 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:500422 original size:19 final size:19
Alignment explanation
Indices: 500398--500446 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
500388 AATGTCGAGT
500398 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
500417 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
500436 TATTTTTGTAT
1 TAATTTTGTAT
500447 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:501067 original size:198 final size:199
Alignment explanation
Indices: 500562--501928 Score: 2575
Period size: 198 Copynumber: 6.9 Consensus size: 199
500552 CAATATGGCC
* * *
500562 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAAACATCGAAA
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCG-AA
*
500627 ACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
64 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
500692 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGA
129 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGA
500757 ATGGAA
194 ATGGAA
* *
500763 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCC-AAATCATCGAAAA
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AAC
500827 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
*
500892 GAATATGTCTAAATAATGTGTCGACACTAATATAG-TTGTGTCGATATTTTTTTTCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAA
500956 TGGAA
195 TGGAA
*
500961 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
501026 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
501091 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
**
501156 TAAA
196 GGAA
501160 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
501224 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
501289 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
501354 GGAA
196 GGAA
501358 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
501423 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
501488 AATATGTCT-AATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
501552 GGAA
196 GGAA
501556 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGAT-CCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
501620 C-AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
501684 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
501749 GGAA
196 GGAA
501753 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
501818 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
501883 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
501929 CTAATTTAAA
Statistics
Matches: 1150, Mismatches: 10, Indels: 14
0.98 0.01 0.01
Matches are distributed among these distances:
196 72 0.06
197 124 0.11
198 506 0.44
199 398 0.35
200 15 0.01
201 35 0.03
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (199 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
GGAA
Found at i:501361 original size:397 final size:398
Alignment explanation
Indices: 500562--501928 Score: 2575
Period size: 397 Copynumber: 3.4 Consensus size: 398
500552 CAATATGGCC
* * *
500562 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAAACATCGAAA
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCG-AA
*
500627 ACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
64 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAG
500692 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGA
129 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGA
*
500757 ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCC-AAATCAT
194 ATGGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
*
500821 CGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTT
259 CG-AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTT
*
500886 ATGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAG-TTGTGTCGATATTTTTTTTCCAG
323 ATGAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAG
500950 AATGAATGGAA
388 AATGAATGGAA
*
500961 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
501026 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
501091 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
**
501156 TAAAAACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCG
196 GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
501220 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
261 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
501285 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAAT
326 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAAT
501350 GAATGGAA
391 GAATGGAA
501358 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
501423 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
501488 AATATGTCT-AATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
501552 GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGAT-CCAAAATCATCG
196 GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
501616 AACCC-AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
261 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
501680 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAAT
326 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAAT
501745 GAATGGAA
391 GAATGGAA
501753 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
501818 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
501883 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
501929 CTAATTTAAA
Statistics
Matches: 953, Mismatches: 11, Indels: 11
0.98 0.01 0.01
Matches are distributed among these distances:
395 271 0.28
396 262 0.27
397 361 0.38
398 24 0.03
399 35 0.04
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (398 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAAT
GAATGGAA
Found at i:503404 original size:18 final size:18
Alignment explanation
Indices: 503383--503450 Score: 55
Period size: 21 Copynumber: 3.4 Consensus size: 18
503373 AGCGGTCGCA
503383 GAAGATGAAGCTGACGAT
1 GAAGATGAAGCTGACGAT
* *
503401 GAAGATGACGATGATGATGAT
1 GAAGATGA--A-GCTGACGAT
*
503422 GATGACGATGAAGCTGGCGAT
1 GA--A-GATGAAGCTGACGAT
503443 GAAGATGA
1 GAAGATGA
503451 TGACGATGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
18 13 0.33
19 1 0.03
20 1 0.03
21 17 0.44
22 1 0.03
23 1 0.03
24 5 0.13
ACGTcount: A:0.37, C:0.09, G:0.35, T:0.19
Consensus pattern (18 bp):
GAAGATGAAGCTGACGAT
Found at i:503407 original size:6 final size:6
Alignment explanation
Indices: 503383--503480 Score: 70
Period size: 6 Copynumber: 16.3 Consensus size: 6
503373 AGCGGTCGCA
* * * * * *
503383 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GATGAT GACGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
* ** * * * * *
503431 GAAGCT GGCGAT GAAGAT GATGAC GATGAT GATGAT GATGAT GAAGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
503479 GA
1 GA
503481 TGATCCAAAC
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 74 1.00
ACGTcount: A:0.37, C:0.07, G:0.35, T:0.21
Consensus pattern (6 bp):
GAAGAT
Found at i:503418 original size:3 final size:3
Alignment explanation
Indices: 503398--503484 Score: 84
Period size: 3 Copynumber: 29.0 Consensus size: 3
503388 TGAAGCTGAC
* * * * * ** *
503398 GAT GAA GAT GAC GAT GAT GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
503446 GAT GAT GAC GAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
503485 CCAAACAAGT
Statistics
Matches: 65, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.36, C:0.06, G:0.34, T:0.24
Consensus pattern (3 bp):
GAT
Found at i:503433 original size:42 final size:42
Alignment explanation
Indices: 503386--503476 Score: 146
Period size: 42 Copynumber: 2.2 Consensus size: 42
503376 GGTCGCAGAA
*
503386 GATGAAGCTGACGATGAAGATGACGATGATGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
* * *
503428 GATGAAGCTGGCGATGAAGATGATGACGATGATGATGATGAT
1 GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
503470 GATGAAG
1 GATGAAG
503477 ATGATGATCC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.08, G:0.35, T:0.22
Consensus pattern (42 bp):
GATGAAGCTGACGATGAAGATGACGACGATGATGATGATGAC
Found at i:503484 original size:18 final size:18
Alignment explanation
Indices: 503383--503480 Score: 88
Period size: 18 Copynumber: 5.4 Consensus size: 18
503373 AGCGGTCGCA
* *
503383 GAAGATGAAGCTGACGAT
1 GAAGATGAAGATGATGAT
*
503401 GAAGATGACGATGATGAT
1 GAAGATGAAGATGATGAT
* * * *
503419 GATGATGACGATGAAGCT
1 GAAGATGAAGATGATGAT
** *
503437 GGCGATGAAGATGATGAC
1 GAAGATGAAGATGATGAT
* *
503455 GATGATGATGATGATGAT
1 GAAGATGAAGATGATGAT
503473 GAAGATGA
1 GAAGATGA
503481 TGATCCAAAC
Statistics
Matches: 63, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 63 1.00
ACGTcount: A:0.37, C:0.07, G:0.35, T:0.21
Consensus pattern (18 bp):
GAAGATGAAGATGATGAT
Found at i:504623 original size:20 final size:20
Alignment explanation
Indices: 504598--504636 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
504588 TTAATATATG
*
504598 TAAAGTATCTATCCTTTTTA
1 TAAAGTATCTATACTTTTTA
*
504618 TAAAGTGTCTATACTTTTT
1 TAAAGTATCTATACTTTTT
504637 TCACTGTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.13, G:0.08, T:0.51
Consensus pattern (20 bp):
TAAAGTATCTATACTTTTTA
Found at i:504932 original size:21 final size:21
Alignment explanation
Indices: 504889--504932 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
504879 ATTACATATC
*
504889 TTTAAAAAAGTATCGATCCTT
1 TTTAAAAAAGTATCGATCATT
*
504910 TTTATAAAAAGTATGGA-CATT
1 TTTA-AAAAAGTATCGATCATT
504931 TT
1 TT
504933 CAACATATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (21 bp):
TTTAAAAAAGTATCGATCATT
Found at i:505218 original size:182 final size:184
Alignment explanation
Indices: 504939--505280 Score: 553
Period size: 182 Copynumber: 1.9 Consensus size: 184
504929 TTTTCAACAT
* * * *
504939 ATTATAATAAAATAGGTAAATTTGCAATATAACCGGTATAAATATATCGGTCTTATGCGCGAATA
1 ATTATAATAAAATAGATAAATTTGCAATATAACCGGTATAAATATACCGATCTTATGAGCGAATA
* * *
505004 GGTCTACAACTTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAA
*
505069 AATGTGTCGATACGATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 AATGTGTCGATACCATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
** * *
505123 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTAT-AATATACCGAT-TTATGAGCGAATA
1 ATTATAATAAAATAGATAAATTTGCAATATAACCGGTATAAATATACCGATCTTATGAGCGAATA
*
505186 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAATAAA
66 GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAA
505251 AATGTGTCGATACCATTTAAAAAAGTGTCG
131 AATGTGTCGATACCATTTAAAAAAGTGTCG
505281 GTAATTTGAA
Statistics
Matches: 145, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
182 102 0.70
183 9 0.06
184 34 0.23
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (184 bp):
ATTATAATAAAATAGATAAATTTGCAATATAACCGGTATAAATATACCGATCTTATGAGCGAATA
GGTCTACAACCTATATCGACACTTTATAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAA
AATGTGTCGATACCATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:507779 original size:25 final size:25
Alignment explanation
Indices: 507745--507809 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
507735 TTATCATTAA
507745 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
507770 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
507795 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
507810 TCTTTTGAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:508126 original size:23 final size:23
Alignment explanation
Indices: 508095--508158 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
508085 ATAGGTAAAC
*
508095 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* * **
508118 ATATAATGTAATAGATATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
508141 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
508159 TGGTTATATT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:508165 original size:23 final size:23
Alignment explanation
Indices: 508095--508167 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
508085 ATAGGTAAAC
* **
508095 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
* *
508118 ATATAATGTAATAGATA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
508141 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
508164 ATAT
1 ATAT
508168 TGTAAAGTGT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
23 40 0.98
24 1 0.02
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:508470 original size:25 final size:25
Alignment explanation
Indices: 508436--508486 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
508426 ACAACAAATC
*
508436 AATTAAACATTGTTGTGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
*
508461 AATTGAACATTGTTATGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
508486 A
1 A
508487 TTTGGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (25 bp):
AATTAAACATTGTTATGGGTACATT
Found at i:508802 original size:18 final size:18
Alignment explanation
Indices: 508781--508817 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
508771 GTAATTGGAG
508781 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
508799 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
508817 T
1 T
508818 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:508825 original size:24 final size:24
Alignment explanation
Indices: 508773--508819 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
508763 TTTCATATGT
* *
508773 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
508797 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
508820 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:509118 original size:39 final size:39
Alignment explanation
Indices: 509075--509161 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
509065 TCCGATGCTC
*
509075 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
*
509114 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
509153 ATCAAAATC
1 ATCAAAATC
509162 TACAACTTGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.48, C:0.21, G:0.14, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:509590 original size:23 final size:23
Alignment explanation
Indices: 509559--509622 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
509549 ATAGGTAAAC
*
509559 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
509582 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
509605 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
509623 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:509629 original size:23 final size:23
Alignment explanation
Indices: 509559--509631 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
509549 ATAGGTAAAC
* **
509559 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
509582 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
509605 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
509628 ATAT
1 ATAT
509632 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:513968 original size:31 final size:31
Alignment explanation
Indices: 513908--514064 Score: 133
Period size: 31 Copynumber: 5.0 Consensus size: 31
513898 GAACCTCGAC
* * *
513908 AACTGTCCATA-GGTCCTTAAAAACCTAGGTA
1 AACTGTCCATATGTTCCCT-AAAACATAGGTA
* * *
513939 AACTGTTCATATGTTCCTTAGAACATAGGTA
1 AACTGTCCATATGTTCCCTAAAACATAGGTA
* *
513970 TACTGTCCATATG-TCCCGAAAGACATAGGTA
1 AACTGTCCATATGTTCCCTAAA-ACATAGGTA
*
514001 ATTA-TGTCCATATGTTCCGTAAAACATAGGTA
1 A--ACTGTCCATATGTTCCCTAAAACATAGGTA
* * *
514033 TACTGTTCATATG-TCCCGAAAGACATAGGTA
1 AACTGTCCATATGTTCCCTAAA-ACATAGGTA
514064 A
1 A
514065 TTCTTCGACT
Statistics
Matches: 102, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
30 12 0.12
31 58 0.57
32 25 0.25
33 7 0.07
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (31 bp):
AACTGTCCATATGTTCCCTAAAACATAGGTA
Found at i:514029 original size:63 final size:63
Alignment explanation
Indices: 513946--514066 Score: 215
Period size: 63 Copynumber: 1.9 Consensus size: 63
513936 GTAAACTGTT
* *
513946 CATATGTTCCTTAGAACATAGGTATACTGTCCATATGTCCCGAAAGACATAGGTAATTATGTC
1 CATATGTTCCGTAAAACATAGGTATACTGTCCATATGTCCCGAAAGACATAGGTAATTATGTC
*
514009 CATATGTTCCGTAAAACATAGGTATACTGTTCATATGTCCCGAAAGACATAGGTAATT
1 CATATGTTCCGTAAAACATAGGTATACTGTCCATATGTCCCGAAAGACATAGGTAATT
514067 CTTCGACTCT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 55 1.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (63 bp):
CATATGTTCCGTAAAACATAGGTATACTGTCCATATGTCCCGAAAGACATAGGTAATTATGTC
Found at i:515656 original size:27 final size:27
Alignment explanation
Indices: 515625--515685 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
515615 TTAATCTTTC
515625 ATAACTTCTTCATCTTTTGATTTCAAG
1 ATAACTTCTTCATCTTTTGATTTCAAG
*
515652 ATAACTTCTTCATCTTTTGATTTTAAG
1 ATAACTTCTTCATCTTTTGATTTCAAG
*
515679 ACAACTT
1 ATAACTT
515686 AAGCTTTCCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.28, C:0.18, G:0.07, T:0.48
Consensus pattern (27 bp):
ATAACTTCTTCATCTTTTGATTTCAAG
Found at i:516959 original size:12 final size:12
Alignment explanation
Indices: 516942--516979 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
516932 CATATGTTCA
516942 CATATCATATAT
1 CATATCATATAT
516954 CATATCATATA-
1 CATATCATATAT
*
516965 AATAT-ATATAT
1 CATATCATATAT
516976 CATA
1 CATA
516980 AATCATTCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
10 5 0.22
11 7 0.30
12 11 0.48
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.39
Consensus pattern (12 bp):
CATATCATATAT
Found at i:518243 original size:32 final size:32
Alignment explanation
Indices: 518202--518298 Score: 110
Period size: 32 Copynumber: 3.1 Consensus size: 32
518192 CATAAGTATA
518202 CTGTCCATATGTCCCGAAAGACATAGGTAATT
1 CTGTCCATATGTCCCGAAAGACATAGGTAATT
* * *
518234 CTGTCCATATATTCCG-TAGAACATAGGT-ATAT
1 CTGTCCATATGTCCCGAAAG-ACATAGGTAAT-T
* *
518266 -TGTTCATATGTCCCGAAAGACATAGATAATT
1 CTGTCCATATGTCCCGAAAGACATAGGTAATT
518297 CT
1 CT
518299 TCGACTCTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
31 24 0.46
32 28 0.54
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (32 bp):
CTGTCCATATGTCCCGAAAGACATAGGTAATT
Found at i:518274 original size:63 final size:61
Alignment explanation
Indices: 518139--518300 Score: 209
Period size: 63 Copynumber: 2.6 Consensus size: 61
518129 AACCTCGGCA
* * * *
518139 ACTGTCCATAGGTCCCG-AAGAACATAGGTAAATTATTCATATGTTCCTTAGAACATAAGTAT
1 ACTGTCCATATGTCCCGAAAG-ACATAGGT-AATTCTTCATATATTCCGTAGAACATAAGTAT
*
518201 ACTGTCCATATGTCCCGAAAGACATAGGTAATTCTGTCCATATATTCCGTAGAACATAGGTAT
1 ACTGTCCATATGTCCCGAAAGACATAGGTAATTCT-T-CATATATTCCGTAGAACATAAGTAT
* * *
518264 ATTGTTCATATGTCCCGAAAGACATAGATAATTCTTC
1 ACTGTCCATATGTCCCGAAAGACATAGGTAATTCTTC
518301 GACTCTTGGC
Statistics
Matches: 89, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
61 6 0.07
62 26 0.29
63 57 0.64
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (61 bp):
ACTGTCCATATGTCCCGAAAGACATAGGTAATTCTTCATATATTCCGTAGAACATAAGTAT
Found at i:518289 original size:31 final size:31
Alignment explanation
Indices: 518141--518290 Score: 126
Period size: 31 Copynumber: 4.8 Consensus size: 31
518131 CCTCGGCAAC
* *
518141 TGTCCATAGGTCCCGAAGAACATAGGTAAAT
1 TGTCCATATGTCCCGAAGAACATAGGTATAT
* * * ** * *
518172 TATTCATATGTTCCTTAGAACATAAGTATAC
1 TGTCCATATGTCCCGAAGAACATAGGTATAT
518203 TGTCCATATGTCCCGAA-AGACATAGGTA-ATT
1 TGTCCATATGTCCCGAAGA-ACATAGGTATA-T
* * *
518234 CTGTCCATATATTCCGTAGAACATAGGTATAT
1 -TGTCCATATGTCCCGAAGAACATAGGTATAT
*
518266 TGTTCATATGTCCCGAA-AGACATAG
1 TGTCCATATGTCCCGAAGA-ACATAG
518291 ATAATTCTTC
Statistics
Matches: 90, Mismatches: 23, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
30 3 0.03
31 61 0.68
32 24 0.27
33 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (31 bp):
TGTCCATATGTCCCGAAGAACATAGGTATAT
Found at i:522615 original size:63 final size:63
Alignment explanation
Indices: 522537--522832 Score: 456
Period size: 63 Copynumber: 4.7 Consensus size: 63
522527 AGGAGGAATC
* * * * *
522537 GCTGATTCCAGTGCAAAACCAAGAAATTCAAGTAAGAAAAGACGAAGGGTATAAGGTGGAGGA
1 GCTGAATCCATTGCAAAACCAAGAAATTCAAGTAAGTAAAGATGAAGGGTATAAGGTGGAGAA
*
522600 GCTGAATCCATTGCAAAACCAAGAAATTCAAGTAAGTAAAGGTGAAGGGTATAAGGTGGAGAA
1 GCTGAATCCATTGCAAAACCAAGAAATTCAAGTAAGTAAAGATGAAGGGTATAAGGTGGAGAA
522663 GCTGAATCCATTGCAAAACCAAGAAATTCAAGTAAGTAAAGATGAAGGGTATAAGGTGGAGAA
1 GCTGAATCCATTGCAAAACCAAGAAATTCAAGTAAGTAAAGATGAAGGGTATAAGGTGGAGAA
* *
522726 GCTGAATCCATTGCAAAACCAAGAAATTC-A--AAGTAAAGATGAAGTGG-ATAAGGTCGAGGA
1 GCTGAATCCATTGCAAAACCAAGAAATTCAAGTAAGTAAAGATGAAG-GGTATAAGGTGGAGAA
* * *
522786 GCTGAATCCATTGCAAAACGAAGGAATTCAAGTAAGAAAAGATGAAG
1 GCTGAATCCATTGCAAAACCAAGAAATTCAAGTAAGTAAAGATGAAG
522833 AGAAGGTAGA
Statistics
Matches: 217, Mismatches: 12, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
60 52 0.24
61 3 0.01
62 1 0.00
63 161 0.74
ACGTcount: A:0.44, C:0.12, G:0.26, T:0.18
Consensus pattern (63 bp):
GCTGAATCCATTGCAAAACCAAGAAATTCAAGTAAGTAAAGATGAAGGGTATAAGGTGGAGAA
Found at i:527734 original size:27 final size:28
Alignment explanation
Indices: 527703--527761 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
527693 TTAAATTATC
*
527703 TTTTTGGTCAAAATAGATACCTAAAGTA
1 TTTTAGGTCAAAATAGATACCTAAAGTA
* * * *
527731 TTTTATGTCAAAATAGGTACTTAAATTA
1 TTTTAGGTCAAAATAGATACCTAAAGTA
527759 TTT
1 TTT
527762 AATTTTTTCC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.42
Consensus pattern (28 bp):
TTTTAGGTCAAAATAGATACCTAAAGTA
Found at i:528147 original size:12 final size:12
Alignment explanation
Indices: 528130--528158 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
528120 TATTTTTAAA
528130 TAAAATATTATT
1 TAAAATATTATT
528142 TAAAATATTATT
1 TAAAATATTATT
528154 TAAAA
1 TAAAA
528159 AAAATTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
TAAAATATTATT
Found at i:533100 original size:2 final size:2
Alignment explanation
Indices: 533093--533155 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
533083 CGTAATTACA
533093 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
533135 AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT A
533156 GGCAAAATAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:535575 original size:40 final size:40
Alignment explanation
Indices: 535511--535600 Score: 135
Period size: 40 Copynumber: 2.2 Consensus size: 40
535501 ATACATAAAG
* * * *
535511 TTTAGTTTATGTTTTACTTTAATACTCTGTCGTTAAGAAC
1 TTTAGTTTTTGTTTCACTTTAATACTCCGTCGTTAAAAAC
*
535551 TTTAATTTTTGTTTCACTTTAATACTCCGTCGTTAAAAAC
1 TTTAGTTTTTGTTTCACTTTAATACTCCGTCGTTAAAAAC
535591 TTTAGTTTTT
1 TTTAGTTTTT
535601 ATTTTATTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.24, C:0.13, G:0.10, T:0.52
Consensus pattern (40 bp):
TTTAGTTTTTGTTTCACTTTAATACTCCGTCGTTAAAAAC
Found at i:536501 original size:20 final size:20
Alignment explanation
Indices: 536474--536521 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
536464 TTATTTAAAT
536474 TATT-TAAAATTTAT-AAAA
1 TATTATAAAATTTATCAAAA
*
536492 TAATTATAAAATTTATCGAAA
1 T-ATTATAAAATTTATCAAAA
536513 TATTATAAA
1 TATTATAAA
536522 TTGATTATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 1 0.04
19 3 0.12
20 18 0.69
21 4 0.15
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (20 bp):
TATTATAAAATTTATCAAAA
Found at i:536522 original size:9 final size:10
Alignment explanation
Indices: 536465--536521 Score: 50
Period size: 9 Copynumber: 5.9 Consensus size: 10
536455 TTGTTTCCAT
*
536465 TATT-TAAAT
1 TATTATAAAA
536474 TATT-TAAAA
1 TATTATAAAA
536483 T-TTATAAAA
1 TATTATAAAA
536492 TAATTATAAAA
1 T-ATTATAAAA
*
536503 T-TTATCGAAA
1 TATTAT-AAAA
536513 TATTATAAA
1 TATTATAAA
536522 TTGATTATGA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
8 2 0.05
9 19 0.47
10 6 0.15
11 13 0.32
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (10 bp):
TATTATAAAA
Found at i:537138 original size:10 final size:9
Alignment explanation
Indices: 537120--537149 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
537110 GTTTAGTATC
537120 TAATTTTTT
1 TAATTTTTT
537129 TAATTTTTT
1 TAATTTTTT
537138 TAATTTTTT
1 TAATTTTTT
537147 TAA
1 TAA
537150 AATCATGCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (9 bp):
TAATTTTTT
Found at i:545584 original size:19 final size:18
Alignment explanation
Indices: 545560--545603 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
545550 TTGTTAGAAG
**
545560 TGTATGAGTTATATGTTAT
1 TGTATGAGGGATATGTT-T
*
545579 TGTATGTGGGATATGTTT
1 TGTATGAGGGATATGTTT
545597 TGTATGA
1 TGTATGA
545604 ATATATGCTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (18 bp):
TGTATGAGGGATATGTTT
Found at i:546207 original size:30 final size:30
Alignment explanation
Indices: 546138--546224 Score: 72
Period size: 30 Copynumber: 2.9 Consensus size: 30
546128 GAGTCGAGAG
* * *
546138 TTACCTATGTCTTTC-GAGACATAT-GATAGT
1 TTACCTATGTCCTTCAGA-ACATATGGACA-A
*
546168 TTACCTATGTCCTT-AGGGACATATGGACAA
1 TTACCTATGTCCTTCA-GAACATATGGACAA
* *
546198 TTACTTATGTTCTTCAGAACATATGGA
1 TTACCTATGTCCTTCAGAACATATGGA
546225 TAGTGGTCCT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
30 41 0.89
31 5 0.11
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (30 bp):
TTACCTATGTCCTTCAGAACATATGGACAA
Found at i:546263 original size:22 final size:23
Alignment explanation
Indices: 546206--546267 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 23
546196 AATTACTTAT
*
546206 GTTCTTCAGAACATATGGATAGTG
1 GTTCTTCAGGACATAT-GATAGTG
* *
546230 GTCCTTCGGGACATAT-ATA-TAG
1 GTTCTTCAGGACATATGATAGT-G
546252 GTTCTTCAGGACATAT
1 GTTCTTCAGGACATAT
546268 TTCACATGCC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
21 1 0.03
22 18 0.56
24 13 0.41
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (23 bp):
GTTCTTCAGGACATATGATAGTG
Found at i:550129 original size:19 final size:18
Alignment explanation
Indices: 550105--550148 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
550095 TTGTTAGAAG
*
550105 TGTATGAGTTATATGTTAT
1 TGTATGAGTGATATGTT-T
*
550124 TGTATGTGTGATATGTTT
1 TGTATGAGTGATATGTTT
550142 TGTATGA
1 TGTATGA
550149 ATATATGCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.52
Consensus pattern (18 bp):
TGTATGAGTGATATGTTT
Found at i:551865 original size:2 final size:2
Alignment explanation
Indices: 551858--551882 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
551848 AAGGAAATGG
551858 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
551883 TATTTATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:552559 original size:29 final size:29
Alignment explanation
Indices: 552509--552564 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
552499 TATGTATAGT
*
552509 TTACCTATGTCCTTAGGGACATATGGACA
1 TTACCTATGTCCTTAGGAACATATGGACA
*
552538 TTACCTATGTTCTTCA-GAACATATGGA
1 TTACCTATGTCCTT-AGGAACATATGGA
552565 TAGTGGGCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 23 0.96
30 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.34
Consensus pattern (29 bp):
TTACCTATGTCCTTAGGAACATATGGACA
Found at i:553775 original size:38 final size:38
Alignment explanation
Indices: 553732--553810 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
553722 TGCAATTTTA
553732 TTACCTTTAATAGTTAGGGGACATAAAAAAGCAATATC
1 TTACCTTTAATAGTTAGGGGACATAAAAAAGCAATATC
553770 TTACCTTTAATAGTTAGGGGACATAAAAAAGCAATATC
1 TTACCTTTAATAGTTAGGGGACATAAAAAAGCAATATC
553808 TTA
1 TTA
553811 GTCATGTCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.30
Consensus pattern (38 bp):
TTACCTTTAATAGTTAGGGGACATAAAAAAGCAATATC
Found at i:559780 original size:2 final size:2
Alignment explanation
Indices: 559773--567437 Score: 2990
Period size: 2 Copynumber: 3886.0 Consensus size: 2
559763 GTCGAATGTA
559773 TG TG TG TG TG TG TG -G TG TG TG TG TG TG TG -G TG -G TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
559812 TG TG TG TG TG TG TG TG TG T- TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
559853 TG TG TG TG TG TG TG TG TG TG TG TG -G TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
559894 TG TG TG TG TG TG TG -G TG TG TG TG TG TG TG TG TG TG -G TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
559934 TG TG TG TG TG TG TG TG -G TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
559975 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
560017 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
560059 TG TG TG -G TG TG TG TG TG GG TG -G TG TG TG TG TG TG TG -G TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
560098 TG TG TG TG TG TG -G TG T- TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
560138 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* *
560180 TG TG TG TG TG -G TG -G TG TG CG TG TG -G TG TG -G TG TG CG T-
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
560217 TG TG CG TG -G AG AG TCG TG TG CG AG TG CG AG TG TG CG CG TG TG
1 TG TG TG TG TG TG TG T-G TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
560259 AG -G TG TG -G AG TCG CG -G TG CG TG TG CG TG TG CG TG TG GG AG
1 TG TG TG TG TG TG T-G TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * *
560299 TG TG -G TG TG TG TG CT- TG TG GG TG TG CG TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * *
560340 TG CG TG TG TG TG TG TG -G TG TG TG CG TG TG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
560381 CG TG CG CG TG CG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
560423 CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG CG GG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * * * *
560465 CG TG CG CG TG CG CG TG CG AG CG CG TG CG TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
560507 TG CG TG TG CG TG TG CG TG TG TG CG TG TG CG TG TG CG TG TCG -G
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T-G TG
* * * * *
560549 CG TG TG TG TG TG TG TG T- TG TG CG TG TG CG TG TG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * *
560590 TG TG CG TG TG CG TG -G CG CCG CG CG CTG TA CG TG TG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG -TG TG TG -TG TG TG TG TG TG TG TG TG
* * * * * * * * *
560633 CG TG TG CG TG TG CG CG TG CG CTG CG TG TG CG TG TG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
560676 TG TG TG TG CG TG TAC TG TG CG CG TG CG CTG TG CG CG -G TG CG CG
1 TG TG TG TG TG TG T-G TG TG TG TG TG TG -TG TG TG TG TG TG TG TG
* * * * * *
560719 TG CG TG TG CG TG TG CG TG TG TG CG TG TCG TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T-G TG TG TG TG TG TG TG
*
560762 AG TG TG TG TG TG T- TG TG TG TG TG TG TG TG -G TG TG TG TG T-
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
560801 TG TG TG TG TG CG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
560843 CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * *
560885 T- TG TG CG TG TG T- TG TG CG TG TG CG TG TG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
560925 CG CG TG TG CG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * *
560967 CG TG TG CG TG TG CG CG TG CG CG TG CG CG TG CG TG TG CTG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG -TG TG TG
* * * * * * * *
561010 TG TG CG TG TG CG TG TG CG TG CG TG TG CG TG TG CG TG TG CG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
561052 TG CG CG TG -G CG TG TG CG CG TG TG CG TG TG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
561093 CG TG TG CG TG TG TG CG TG TG CG TT TG CG TG T- TCG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T-G TG TG TG TG
* * * * * *
561135 TG CG TG TG CG TG TG CG TG T- TG CG TG CG TG TG CG TG TG CTG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG -TG TG
* * * * *
561177 CG TG TG CG TG TG CG TG TG CG TG TG T- TG TG CT- TG T- TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG -TG TG TG TG TG TG
* * * * * * * * *
561217 TG TG CG CG TG CG CG TG CG CTG TG CG CG TG TG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
561260 CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* *
561302 CG -G TG CG TG TG TG TG TG TG TG TG TG T- TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
561342 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * *
561384 CG TG TG TG TG TG TG -G TG TG CG CG TG TG TG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
561425 CG CG TG TG CG CG TG TG CG TG TG CG T- TG CG TG TG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * * * *
561466 TG CG TG CG TG CG CG TG CG CG TG CG TG CG CG TG CG CG TG CG -G
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * *
561507 TG -G TG TG TG TG TG TG TG CG TG TG CG TG TG CTG T- TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG -TG TG TG TG TG TG
* * * * * * * * * *
561548 CG TG TG CG CG TG CG TG TG CG CG TG TG CG CG TG TG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
561590 TG TG CG TG TG TG CG CG TG TG CG TG TG CG TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * *
561632 TG CG TG TG CG TG TG CG TG TG CG TG TG T- TG TG CG TG T- TCG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T-G TG
* * * * * * * * * *
561673 TG CG TG T- TG CG TG TG CG CG TG CG CG TG CG CG TG TG CG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
561714 TA CG TG TG CG TG TG CG TG TG CG T- TG TG CG TT TG CTG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG -TG TG TG TG
* * * *
561756 TG T- TG TG TG CG TG TG CTG TG CG TG TG CG TG TG CG TG TG TG TG
1 TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * *
561798 TG TG TG TG TG TG TG TG TG TG TG CG CG TG TG CG TG CG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * *
561840 CG TG TG CG TG TG CG TG CTG CG TG CG CG TG CG TG TG CG TG CG CG
1 TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * * * *
561883 TG CG CG TG TG CG TG CTG -G CG CG TG TC CG CG TG CG CG TG CG CG
1 TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * * *
561925 TG TG CG TG CG CG TG CG CG TG CG CG TG CG TG CG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * * *
561967 TG CG CG TG CG CG TG CG CG TG -G CG CG TG TG CG CG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
562008 CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * *
562050 CG TG CG CG TG TG CG CTG TG CG CG -G TG CG CG TG TG CG TG TG CG
1 TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
562092 TG CG TG TG CG TG TG CG TG TG CG TG TG T- TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * *
562133 TG CT- TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG T- TG
1 TG -TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
562174 TG TG TG TG T- TG TG CG TG TG CG TG CG TG TG CG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * * * *
562215 TG CG CG TG TG CG CG TG CCG TG CG CTG CG CG TG CG CG TG CG CG TG
1 TG TG TG TG TG TG TG TG -TG TG TG -TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * * * * *
562259 CG CG T- TCG CG TG CG CG -G CG CG TG CG CG TG CG CG TG CG CG TG
1 TG TG TG T-G TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * *
562300 CG TG TG CG TG TG T- TG TG CG TG TG T- TG TG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
562340 CG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * * * *
562382 TG CG TG TG CG CG CCG CG CG CG TG TA CG TG TG CG TG TG CG CG TG
1 TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * *
562425 TG CG CG TG TG CG CG T- TCG CG TG CG CG TG CG TG TG CG TG TG CG
1 TG TG TG TG TG TG TG TG T-G TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
562467 TG TG CG TG TG CG TG TG CG TG TG CG CG TG CG CG TG TG CG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
562509 TG CG CG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * *
562551 TG CG -G TG CG TG CG TG CG TG TG TG TG TG TG TG TG T- TG T- TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * *
562590 TG TG TG -G TG TG TG TG TG TG CG TG TG CG TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * *
562631 TG CG TG -G CG TG CG TG TG CG TG TG CG TG TG TG TG TG T- TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
562671 CG TG TG TG TG CG TG TG CG TG TG CG TG TG CG TG CG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
562713 TG TG CG TG TG CG TG TG CG TG TG CTG TG CG TG TG CG CG TG CG CG
1 TG TG TG TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
562756 TG CG CG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * *
562798 TG CG TG TG CG TG TG CG TG TG CG CG TG CG CG TG CG TG TG CG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
562840 TG TG CG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
562882 TG TG CG TG TG CG TT TG CG TG TCG TG TG CTG TG CG T- TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG T-G TG TG -TG TG TG TG TG TG TG TG
* * * * * * *
562925 CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG T- TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
562966 TG TG CG TG TG CG TG TG CG CG T- TCG CG TG CG CG TG TG CG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG T-G TG TG TG TG TG TG TG TG TG
* * * * * * * *
563008 TG CG TG TG CG TG CG TG TG CG TG TG CG TT TG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
563050 CG TG TG CG TG TG CG TG TG CG TG TG CG -G TG TG TG CG CG TG T-
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
563090 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * *
563132 TG TG TG TG TG CG CG CG TG TG TG TG TG T- TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
563173 TG TG TG CG CG TG TG CG TG TG CG TG TG CG CG TG TG CG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
563215 TG CG TG TG CG T- TCG CG TCG CG TG CG TG TG CG TG TG CG TG TG CG
1 TG TG TG TG TG TG T-G TG T-G TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * * * * *
563258 TG CG CG TG CG CG TG CG CG TG CG CG -G CG CG TG CG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * *
563299 TG TG CG TG TG CG TG TG CG -G TG CG TG TG TG TG TG -G TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
563339 TG TG TG CG TG TG TT TG TG TG TG TG CG TT TG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * *
563381 CG TG TG CG TG TG CG CG TG CG TG TG CG CG TG TG CG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
563423 TG TG CG TG TG CG TG TG CG TG TG CG CG CG TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
563465 TG CG TG TCG TG TG CG TG TG CG GG TG CG TG TG CG -G TG -G CG TG
1 TG TG TG T-G TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
563506 TG CG TG TG T- TG TG CG TG TG CTG TG CG TG TG CG CG TG CG CG TG
1 TG TG TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
563548 CG CG TG TG CG CG TG TG CG -G TG CTG TG CG TT TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG
* * * * * *
563590 TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
563632 TG TG TG TG TG TG -G TG TG TG TG TG TG TG TG TG TG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * *
563673 TG TG TG TA CG TG TG CG TG -G TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
563714 TG TG TG TG -G TG TG TG TG TG TG TG T- TG TG TG TG TG TG TG T-
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
563753 TG TG TG T- TG TG TG TG TG TG TG CG TG TG T- TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
563793 TG T- TG TG TG TG TG TA TG TG TG CG CG TG CG CG TG T- TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
563833 TG TG CG T- TG TG T- TG CG TG TG CG TG TG CG TG TG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * *
563873 CG TG TG CG CG TG CG TG TG CG TG TG CG TG TG CG TG TG CG CG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * *
563915 TG CG TG TG TG T- TG CG TG TG CG TG TG TG TG TG TG TG TG T- TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* *
563955 TG TG TG TG T- TG TG CG TG TG TG TG TG TG TG TG TG TG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
563996 CG TG TG CG TG TG CG CG TG TG CG -G TG CG TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * *
564037 TG CG TG CG TG TG CG TG TG CG CG TG TG CG CG CG TG CG -G TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
564078 TG TG CG TG TG CG TG CTG TG CG TG TG CG TG TG CG TG TG CG -G TG
1 TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * *
564120 T- TG -G CG TG TG CG TG TG CG CG TG CG CG TG CG CG TG TG CG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
564160 T- TG CG TG TG CG TG TG CG TT TG CG TG TG CG T- TG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
564200 TG TG CG TG TG CG TG TG CG TG CG TG TG CG TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* *
564242 TG CG T- TG TG CG TG TG TG TG TG TG TG TG TG TG TG TG TG T- TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* *
564282 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG CG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * *
564324 TG -G TG TG TG TG TG TG TG TG TG TG T- TCG CG TG TG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T-G TG TG TG TG TG TG TG
* * * * * * * *
564365 CG TG TG CG TG TG CG TG TG TG TG CG T- TCG CG TG CG CG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T-G TG TG TG TG TG TG TG
* * * * * * *
564407 TG CG TG CG TG TG CG TG TG CG TG TG CG -G TG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * * * *
564448 CG TG CG CG TG CG CG TG CG CG TG CG CG -G TG CG TG -G CG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
564488 CG CG TG TG CG TG TG CG TG CG TG TG CG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * *
564530 TG TG TG TG CG TG TCG TG TG CG TG TG CG TG TG CG TG TG CG TG TG
1 TG TG TG TG TG TG T-G TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * * *
564573 CG TG CG CG TG CG CG TG TG CG CG TG TG CG CG TG TG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
564615 TG TG CG TG CG TG TG CG TG CG TG TG CG CG TG TG CG TT TG CG T-
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
564656 TG CG TG TG CG TG TG CG TG TG CG TG CG TG TG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
564698 CG TG TG CG TG TG CG TG TG CG TG TG T- TG CG TG TG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
564739 TG TG CG CG TG CG CG TG TG CG CG TG CG CG TG TCG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T-G TG TG TG TG TG
* * * * * * * *
564782 CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG GG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
564824 T- TG TG TG TG TG TG TG -G TG TG T- TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* *
564863 TG TG T- TG TG TG TG TG TG TG TG -G TG TG TG CG CG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * *
564903 TG TG TG TG TG TG TG TG TG TG TG CG CG TG CG TG TG CG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
564945 CG TG CG CG TG TG CG T- TCG CG TG CG CG TG CTG TG CG CG TG TG TG
1 TG TG TG TG TG TG TG TG T-G TG TG TG TG TG -TG TG TG TG TG TG TG
* * * * * * *
564988 CG TG TG CTG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG
1 TG TG TG -TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * * * *
565031 TG CG CG TG CG TG TG CG TG CG CG TG CG CTG CG CG TG CG CG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG
* * * * * * *
565074 CG TG CG TT TG CG TG TG CG TG TG CG TG TG CG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * *
565116 TG TG TG TG TG TG CTG TG CG TG -G CG TG TG CG TG TG CG TG TG CG
1 TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
565158 TG TG CG CG TG CG TG -G CCG TG TG CG TG TG CG TG TCG TG TG CG TG
1 TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG T-G TG TG TG TG
* * * * * * * * *
565201 TG CG TG TG CG TG CG CG TG CG CG TG CG TG TG CG TG TG CG T- TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * *
565242 CG TG TG CG TG TG CG -G TG CG TG TG TG TG TG TG CG TG TG CTG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG -TG TG
* * * * * * * *
565284 CG T- TG CG TG TG CG TG TG CTG TG CG TG TG CG TG TG CG CG TG CG
1 TG TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
565326 TG TG CG CG TG CG CG TG CG TG CG TG CG TG T- TCG TG TG CG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T-G TG TG TG TG TG
* * * * * * * *
565368 TG -G CG TG TG CG TT TG CG TG TG CG TG TG CG TG TG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
565409 TG TG CG TG TG CT- TG TG CG TG TG CG TG TG CG TG TG CG CG CG TG
1 TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
565451 TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * *
565493 TG CG TG TG CG CG TG CG CG TG CG CG TG TG CG CG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
565535 CG TG TG CG TG TG CG TG TG CG TT TG CTG CG TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG
* * * * *
565578 TG CG TG TG CTG TG CG TG TG CG TG TG CTG TG CG TG TG CG TG TG TG
1 TG TG TG TG -TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG
565622 TG TG TG TG TG TG TG TG TG -G TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * *
565663 CG TG TG T- TG TG T- TG TA CG TG TG CG GG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
565703 T- TG TG TG TG TG TG TG TG TG TG TG T- TG TG TG TG -G TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* *
565742 TG TG TG TG TG TG TG T- TG TG TG TG T- TG TG TG TG TA TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * *
565782 TG TG T- TG TG TG TG TG TG TT TG TG TG TG TA TG TG TG CG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
565823 CG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
565865 TG TG CG CG TG TG CG CG TG CG TG TG CG TG TG CG TG TG CG T- TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * *
565906 CG TCG TG CT- TG TG TG TG TG CG TG TG CG TG TG TG TG TG TG TG TG
1 TG T-G TG -TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
565949 TG TG TG T- TG TG TG TG -G T- TG TG TG TG TG TG TG TG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
565988 CG TG TG CG TG TG CG CG TG TG CG TG TG CG TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
566030 TG CG TG TG CG CG TG TG CG TG TG CG TG TG CG TT TG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
566072 TG TG CG TG TG CG TG TG CG TG TG CG TG CG TG TG CG TG CG CG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
566114 TG TG TG CG TG TG CG TG TG CG TG TG CG TG CG CAG CG TG CG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG -TG TG TG TG TG TG
* * * * * *
566157 TG TG CG TG TG CG TG TG CG T- TG CG TG -G CG TG TG TG CG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
566197 CG -G CG TG CG TG GG TG TG CG TG TG CG T- TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
566237 TG TG TG TG TCG CG TG TG CG TG CG CG TG TG CG TG TG TG CG TG TG
1 TG TG TG TG T-G TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
566280 CG TG TG CG TG TG CG TG TG CTG TG CG TG TG CG TG TG T- TG TG CG
1 TG TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * * *
566322 TG TG CG TG CG TG TG CG CTG CG CG TG CG CG CG CG TG CG CG TG TG
1 TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
566365 TG TG CG TG -G CG TG TG CG TG TG CT- TG CG TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG
* * * * * * *
566406 TG CG TG TG CG TG TG CG TG TG CG TG TG CG T- TG TG CG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * *
566447 TG CG TG TG TG CG TG TG CG -G TG TG CG TG TG TG TG -G TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
566487 TG TG TG TG TG TG TT TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * *
566529 TG TG TG TG TG -G CG CG TG TG CG TG TG CG CG TG CG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * *
566570 TG CG CG TG CG CG TG CG CG TG TG CG TG TG CG TG TG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * *
566612 TG TG CG TG -G CG CG TG TCG TG TG CG TG CG CG TG CG CG TG CG CG
1 TG TG TG TG TG TG TG TG T-G TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
566654 CG CG CG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * * * *
566696 TG CG TG TG CG TG T- TG TG TCG CG AG CG CG TG CG CG CG CG CG CG
1 TG TG TG TG TG TG TG TG TG T-G TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * * *
566738 CG TG TG -G TG TG CG TG TG CG CG TG CG CG TG TG CG AG AG TG AG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
566779 TG TG CG TG AG TG TG AG TG TG AG TG TG CG TG TG AG TG TG CG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
566821 TG CG TG TG CG TG ATG TG CG TG TG CG TG TG CG TG TG CG TG TG AG
1 TG TG TG TG TG TG -TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * *
566864 TG TG AG TG TG -G TG TG CG TG TG CG TG TG AG TG TG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * *
566905 TG TG CG TG TG -G TG TG CG TG TG AG -G TG AG TG TG -G TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
566944 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T- TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
566985 TG TG TG TG TG TG TG TG -G TG TG TG TG TG TG TG -G TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
567025 TG TG TG TG T- TG TG TG TG TG TG TG TG TG TG TG TG TG TG GG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * *
567066 TG TG TG TG TG TG -G TG TG TG CG TG TG CG TG TG -G TG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
567106 TG TG CG TG TG CG TG TG CG TG TG AG TG TG CG TG TG CG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
567148 TG TG AG TG TG AG TG TG CG TG TG CG TG -G CG TG CG CG TG -G TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * * * *
567188 TG AAG TG CG CG TG CG TG AG TG CG CG T- TG CTG TG TG CG TG TG AG
1 TG -TG TG TG TG TG TG TG TG TG TG TG TG TG -TG TG TG TG TG TG TG
* * * * * *
567231 TG TG CG -G TG CG TG CG CG TG TG TG TG TG CG TG TG TG TG TG CG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * * * * *
567272 TG TG CG T- TG TG TG -G CG TG CG CG TG CG CG TG TG CG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * *
567312 CG TG TG T- TG TG CG TG TG TG TG CG TG TG TG TG CG TG TG TG T-
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * * *
567352 TG TG CG TG TG TG CG TG TG TG TG CG TG TG TG TG CG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* * *
567394 CG TG TG TG TG CG TG TG TG TG CG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
567436 TG
1 TG
567438 AACTAGAATA
Statistics
Matches: 5593, Mismatches: 1827, Indels: 486
0.71 0.23 0.06
Matches are distributed among these distances:
1 175 0.03
2 5323 0.95
3 95 0.02
ACGTcount: A:0.01, C:0.15, G:0.49, T:0.35
Consensus pattern (2 bp):
TG
Found at i:560291 original size:12 final size:12
Alignment explanation
Indices: 559776--567437 Score: 6738
Period size: 12 Copynumber: 646.9 Consensus size: 12
559766 GAATGTATGT
*
559776 GTGTGTGTGTG-
1 GTGTGCGTGTGC
* *
559787 GTGTGTGTGTGT
1 GTGTGCGTGTGC
*
559799 GTGGTG-GTGTGT
1 GT-GTGCGTGTGC
* *
559811 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
559823 GTGTGTGTTGTGT
1 GTGTGCG-TGTGC
* *
559836 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
559848 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
559860 GTGTGTGTGTGT
1 GTGTGCGTGTGC
*
559872 GTGTG-GTGTGT
1 GTGTGCGTGTGC
* *
559883 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
559895 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
559907 G-GTGTGTGTGT
1 GTGTGCGTGTGC
*
559918 GTGTGTGTGTG-
1 GTGTGCGTGTGC
* *
559929 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
559941 GTGTGTGTG-GT
1 GTGTGCGTGTGC
* *
559952 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
559964 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
559976 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
559988 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
560000 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
560012 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
560024 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
560036 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
560048 GTGTGTGTGTGT
1 GTGTGCGTGTGC
*
560060 GTGTG-GTGTGT
1 GTGTGCGTGTGC
* *
560071 GTGTGGGTGGTGT
1 GTGTGCGT-GTGC
*
560084 GTGTGTGTGTG-
1 GTGTGCGTGTGC
* *
560095 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
560107 GTGGTG-TTGTGT
1 GT-GTGCGTGTGC
* *
560119 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
560131 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
560143 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
560155 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
560167 GTGTGTGTGTGG
1 GTGTGCGTGTGC
* *
560179 GTGTGTGTGTGGTG
1 GTGTGCGTGT-G-C
560193 GTGTGCGTGTG-
1 GTGTGCGTGTGC
560204 GTGTG-GTGTGC
1 GTGTGCGTGTGC
*
560215 GTTGTGCGTG-GA
1 G-TGTGCGTGTGC
*
560227 GAGT-CGTGTGC
1 GTGTGCGTGTGC
* *
560238 GAGTGCGAGT--
1 GTGTGCGTGTGC
* *
560248 GTGCGCGTGTGAG
1 GTGTGCGTGTG-C
*
560261 GTGTG-GAGTCGC
1 GTGTGCGTGT-GC
560273 G-GTGCGTGTGC
1 GTGTGCGTGTGC
*
560284 GTGTGCGTGTGG
1 GTGTGCGTGTGC
* * *
560296 GAGTGTG-GTGT
1 GTGTGCGTGTGC
* *
560307 GTGTGCTTGTGG
1 GTGTGCGTGTGC
560319 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560331 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
560343 GTGT--GTGTGT
1 GTGTGCGTGTGC
*
560353 GTG-GTGTGTGC
1 GTGTGCGTGTGC
560364 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
560376 GTGTGCGTGCGC
1 GTGTGCGTGTGC
*
560388 GTGCGCGTGTGC
1 GTGTGCGTGTGC
560400 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560412 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560424 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560436 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560448 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* * *
560460 GCGGGCGTGCGC
1 GTGTGCGTGTGC
* *
560472 GTGCGCGTGCGAGC
1 GTGTGCGT--GTGC
*
560486 GCGTGCGTGTGC
1 GTGTGCGTGTGC
560498 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560510 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560522 GTGTGTGCGTGTGC
1 --GTGTGCGTGTGC
560536 GTGTGCGTGTCGGC
1 GTGTGCGTGT--GC
*
560550 GTGT--GTGTGT
1 GTGTGCGTGTGC
*
560560 GTGTG-TTGTGC
1 GTGTGCGTGTGC
560571 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560583 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560595 GTGTGCGTG-GC
1 GTGTGCGTGTGC
* * *
560606 GCCGCGCGCTGTAC
1 G-TGTGCG-TGTGC
560620 GTGTGCGTGTGCGC
1 GTGTGCGTGT--GC
560634 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
560646 GCGTGCG-CTGC
1 GTGTGCGTGTGC
560657 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560669 GTGTGCGTGT--
1 GTGTGCGTGTGC
*
560679 GTGTGCGTGTAC
1 GTGTGCGTGTGC
*
560691 -TGTGCGCGTGC
1 GTGTGCGTGTGC
*
560702 GCTGTGCGCGGTGC
1 G-TGTGCG-TGTGC
*
560716 GCGTGCGTGTGC
1 GTGTGCGTGTGC
560728 GTGTGCGTGTGTGC
1 GTGTGC--GTGTGC
560742 GTGT-CGTGTGC
1 GTGTGCGTGTGC
*
560753 GTGTGCGTGAGTGT
1 GTGTGCGT--GTGC
* *
560767 GTGTGTGTTGTGT
1 GTGTGCG-TGTGC
*
560780 GTGTGTGTGTG-
1 GTGTGCGTGTGC
* *
560791 GTGTGTGTGT-T
1 GTGTGCGTGTGC
* *
560802 GTGTGTGTGCGC
1 GTGTGCGTGTGC
560814 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560826 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560838 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560850 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560862 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
560874 GTGTGTGTGTG-
1 GTGTGCGTGTGC
*
560885 TTGTGCGTGTG-
1 GTGTGCGTGTGC
*
560896 TTGTGCGTGTGC
1 GTGTGCGTGTGC
560908 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
560920 GTGTGCGCGTGT
1 GTGTGCGTGTGC
*
560932 GCGTGCGTGTGC
1 GTGTGCGTGTGC
560944 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560956 GTGTGCGTGTGC
1 GTGTGCGTGTGC
560968 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
560980 GCGTGCGCGTGC
1 GTGTGCGTGTGC
*
560992 GCGTGCGTGTGC
1 GTGTGCGTGTGC
561004 -TGTGCGTGTGC
1 GTGTGCGTGTGC
561015 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561027 --GTGCGTGTGC
1 GTGTGCGTGTGC
561037 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
561049 GCGTGCGCGTGGC
1 GTGTGCGTGT-GC
561062 GTGTGCGCGTGTGC
1 GTGT--GCGTGTGC
561076 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561088 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561100 GTGTGTGCGTGTGC
1 --GTGTGCGTGTGC
* *
561114 GTTTGCGTGTTC
1 GTGTGCGTGTGC
561126 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561138 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561150 GTGTTGC--GTGC
1 GTG-TGCGTGTGC
561161 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561173 -TGTGCGTGTGC
1 GTGTGCGTGTGC
561184 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
561196 GTGTG-TTGTGC
1 GTGTGCGTGTGC
561207 TTGTTGTGCGTGTGC
1 --G-TGTGCGTGTGC
* *
561222 GCGTGCGCGTGC
1 GTGTGCGTGTGC
561234 GCTGTGCGCGTGTGC
1 G-TGT--GCGTGTGC
561249 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561261 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561273 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561285 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561297 GTGTGCG-GTGC
1 GTGTGCGTGTGC
* *
561308 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
561320 GTGTGTGT-TGT
1 GTGTGCGTGTGC
* *
561331 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
561343 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
561355 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
561367 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
561379 GTGCGCGTGTGT
1 GTGTGCGTGTGC
*
561391 GTGTGTGGTGTGC
1 GTGTG-CGTGTGC
*
561404 GCGT--GTGTGC
1 GTGTGCGTGTGC
561414 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
561426 GCGT--GTGCGC
1 GTGTGCGTGTGC
561436 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561448 GT-TGCGTGT--
1 GTGTGCGTGTGC
561457 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
561469 GTGCGTGCGCGTGC
1 GT--GTGCGTGTGC
* *
561483 GCGTGCGTGCGC
1 GTGTGCGTGTGC
* *
561495 GTGCGCGTGCG-
1 GTGTGCGTGTGC
* *
561506 GTGGTGTGTGTGT
1 GT-GTGCGTGTGC
561519 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561531 GTGTGC-TGTTGC
1 GTGTGCGTG-TGC
561543 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
561555 GCGTGCGTGTGC
1 GTGTGCGTGTGC
* *
561567 GCGT--GTGCGC
1 GTGTGCGTGTGC
561577 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561589 GTGTGCGTGT--
1 GTGTGCGTGTGC
*
561599 GTGCGCGTGTGC
1 GTGTGCGTGTGC
561611 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561623 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561635 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561647 GTGTGCGTGTG-
1 GTGTGCGTGTGC
* *
561658 TTGTGCGTGTTC
1 GTGTGCGTGTGC
561670 GTGTGCGTGTTGC
1 GTGTGCGTG-TGC
*
561683 GTGTGCGCGTGC
1 GTGTGCGTGTGC
* *
561695 GCGTGCGCGT--
1 GTGTGCGTGTGC
* *
561705 GTGCGCGTGTAC
1 GTGTGCGTGTGC
561717 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561729 GTGTGCGTTGTGC
1 GTGTGCG-TGTGC
*
561742 GTTTGC-TGTGC
1 GTGTGCGTGTGC
*
561753 GTGTGTTGTGTGC
1 GTGTG-CGTGTGC
561766 GTGTGC-TGTGC
1 GTGTGCGTGTGC
561777 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
561789 GTGT--GTGTGT
1 GTGTGCGTGTGC
* *
561799 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
561811 GTGTGTGTGCGC
1 GTGTGCGTGTGC
*
561823 GTGTGCGTGCGC
1 GTGTGCGTGTGC
561835 GTGTGCGTGTGC
1 GTGTGCGTGTGC
561847 GTGTGCGTGCTGC
1 GTGTGCGTG-TGC
*
561860 --GTGCGCGTGC
1 GTGTGCGTGTGC
*
561870 GTGTGCGTGCGC
1 GTGTGCGTGTGC
*
561882 GTGCGCGTGTGC
1 GTGTGCGTGTGC
561894 GTGCTGGCGCGTGTCCGC
1 GTG-T---GCGTGT--GC
* *
561912 GTGCGCGTGCGC
1 GTGTGCGTGTGC
561924 GTGTGC--GTGC
1 GTGTGCGTGTGC
* *
561934 GCGTGCGCGTGC
1 GTGTGCGTGTGC
* *
561946 GCGTGCGTGCGC
1 GTGTGCGTGTGC
561958 GTGTGCGTGTGCGC
1 GTGTGCGTGT--GC
* *
561972 GTGCGCGTGCGC
1 GTGTGCGTGTGC
*
561984 GTGGCGCGTGTGC
1 GT-GTGCGTGTGC
*
561997 GCGTGCGTGTGC
1 GTGTGCGTGTGC
562009 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562021 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562033 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
562045 GTGTGCGTGCGC
1 GTGTGCGTGTGC
562057 GTGTGCGCTGTGCGC
1 GTGTGCG-TGT--GC
*
562072 GGTGCGCGTGTGC
1 -GTGTGCGTGTGC
562085 GTGTGC--GTGC
1 GTGTGCGTGTGC
562095 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562107 GTGTGCGTGTG-
1 GTGTGCGTGTGC
*
562118 TTGTGCGTGTGC
1 GTGTGCGTGTGC
*
562130 GTGTGCTTGTGC
1 GTGTGCGTGTGC
562142 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562154 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
562166 GTGTG-TTGTGT
1 GTGTGCGTGTGC
*
562177 GTGTG-TTGTGC
1 GTGTGCGTGTGC
* *
562188 GTGTGCGTGCGT
1 GTGTGCGTGTGC
*
562200 GTGCGCGTGTGC
1 GTGTGCGTGTGC
562212 GTGTGCGCGTGTGC
1 GTGT--GCGTGTGC
* *
562226 GCGTGC-CGTGC
1 GTGTGCGTGTGC
* *
562237 GCTGCGCGTGCGC
1 G-TGTGCGTGTGC
* *
562250 GTGCGCGTGCGC
1 GTGTGCGTGTGC
*
562262 GT-T-CGCGTGC
1 GTGTGCGTGTGC
* *
562272 GCG-GCGCGTGC
1 GTGTGCGTGTGC
* *
562283 GCGTGCGCGTGC
1 GTGTGCGTGTGC
*
562295 GCGTGCGTGTGC
1 GTGTGCGTGTGC
*
562307 GTGTG-TTGTGC
1 GTGTGCGTGTGC
*
562318 GTGTG-TTGTGC
1 GTGTGCGTGTGC
562329 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562341 --GTGCGTGTGC
1 GTGTGCGTGTGC
562351 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562363 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562375 GTGTGC--GTGC
1 GTGTGCGTGTGC
* *
562385 GTGTGCGCG-CC
1 GTGTGCGTGTGC
* * *
562396 GCGCGCGTGTAC
1 GTGTGCGTGTGC
562408 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
562420 GCGT--GTGCGC
1 GTGTGCGTGTGC
* *
562430 GTGTGCGCGTTC
1 GTGTGCGTGTGC
* *
562442 GCGTGCGCGTGC
1 GTGTGCGTGTGC
562454 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562466 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562478 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
562490 GCGTGCGCGT--
1 GTGTGCGTGTGC
*
562500 GTGCGCGTGTGC
1 GTGTGCGTGTGC
*
562512 GCGTGCGTGTGC
1 GTGTGCGTGTGC
562524 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562536 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562548 GTGTGCG-GTGC
1 GTGTGCGTGTGC
*
562559 GTGCGTGCGTGTGT
1 GT--GTGCGTGTGC
*
562573 GTGTGTGTGTG-
1 GTGTGCGTGTGC
* * *
562584 TTGTTGTGTGTGGT
1 GTG-TGCGTGT-GC
*
562598 GTGTGTGTGTGC
1 GTGTGCGTGTGC
562610 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562622 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562634 GTG-GC--GTGC
1 GTGTGCGTGTGC
562643 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
562655 GTGTGTGTGTG-
1 GTGTGCGTGTGC
*
562666 TTGTGCGTGT--
1 GTGTGCGTGTGC
562676 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562688 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
562700 GTGCGCGTGTGC
1 GTGTGCGTGTGC
562712 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562724 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562736 -TGTGCGTGTGC
1 GTGTGCGTGTGC
* *
562747 GCGTGCGCGTGC
1 GTGTGCGTGTGC
*
562759 GCGTGCGTGTGC
1 GTGTGCGTGTGC
562771 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562783 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562795 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562807 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
562819 GCGTGCGCGTGC
1 GTGTGCGTGTGC
*
562831 GTGTGCGCGT--
1 GTGTGCGTGTGC
*
562841 GTGCGCGTGTGC
1 GTGTGCGTGTGC
562853 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562865 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
562877 GCGT--GTGTGC
1 GTGTGCGTGTGC
*
562887 GTGTGCGTTTGC
1 GTGTGCGTGTGC
562899 GTGT-CGTGTGC
1 GTGTGCGTGTGC
562910 -TGTGCGT-TGC
1 GTGTGCGTGTGC
562920 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562932 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562944 GTGTGCGTGTGC
1 GTGTGCGTGTGC
562956 GTGT--GT-TGC
1 GTGTGCGTGTGC
562965 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
562977 GTGTGCGCGTTCGC
1 GTGTGCGTG-T-GC
*
562991 GTGCGCGTGTGCGC
1 GTGTGCGTGT--GC
563005 GTGTGCGTGTGC
1 GTGTGCGTGTGC
563017 --GTGCGTGTGC
1 GTGTGCGTGTGC
*
563027 GTGTGCGTTTGC
1 GTGTGCGTGTGC
563039 GTGTGCGTGTGC
1 GTGTGCGTGTGC
563051 GTGTGCGTGTGC
1 GTGTGCGTGTGC
563063 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
563075 G-GTGTGTGCGC
1 GTGTGCGTGTGC
* *
563086 GTGTTGTGTGTGT
1 GTG-TGCGTGTGC
* *
563099 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
563111 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
563123 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* * *
563135 GTGTGTGCGCGC
1 GTGTGCGTGTGC
*
563147 GTGTGTGTGTG-
1 GTGTGCGTGTGC
* * *
563158 TTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
563170 GTGTGTGTGCGC
1 GTGTGCGTGTGC
563182 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
563194 GTGTGCGCGTGT
1 GTGTGCGTGTGC
*
563206 GCGTGCGTGTGC
1 GTGTGCGTGTGC
563218 GTGTGCGT-T-C
1 GTGTGCGTGTGC
* *
563228 GCGT-CGCGTGC
1 GTGTGCGTGTGC
563239 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
563251 GTGTGCGTGCGC
1 GTGTGCGTGTGC
* *
563263 GTGCGCGTGCGC
1 GTGTGCGTGTGC
* *
563275 GTGCGCG-GCGC
1 GTGTGCGTGTGC
*
563286 GTGCGCGTGTGC
1 GTGTGCGTGTGC
563298 GTGTGCGTGTGC
1 GTGTGCGTGTGC
563310 GTGTGCG-GTGC
1 GTGTGCGTGTGC
* *
563321 GTGTGTGTGTGGT
1 GTGTGCGTGT-GC
*
563334 GTGTGTGTGTGC
1 GTGTGCGTGTGC
** *
563346 GTGTGTTTGTGT
1 GTGTGCGTGTGC
*
563358 GTGTGCGTTTGC
1 GTGTGCGTGTGC
563370 GTGTGCGTGTGC
1 GTGTGCGTGTGC
563382 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
563394 GCGTGCGTGTGC
1 GTGTGCGTGTGC
* *
563406 GCGT--GTGCGC
1 GTGTGCGTGTGC
563416 GTGTGCGTGTGC
1 GTGTGCGTGTGC
563428 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
563440 GTGTGC--GCGC
1 GTGTGCGTGTGC
563450 GTGTGCGTGTGC
1 GTGTGCGTGTGC
563462 GTGTGCGTGT-C
1 GTGTGCGTGTGC
563473 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
563485 GGGTGCGTGTGC
1 GTGTGCGTGTGC
563497 G-GTGGCGTGTGC
1 GTGT-GCGTGTGC
*
563509 GTGTG-TTGTGC
1 GTGTGCGTGTGC
563520 GTGTGC-TGTGC
1 GTGTGCGTGTGC
*
563531 GTGTGCGCGTGC
1 GTGTGCGTGTGC
* *
563543 GCGTGCGCGT--
1 GTGTGCGTGTGC
*
563553 GTGCGCGTGTGC
1 GTGTGCGTGTGC
563565 G-GTGC-TGTGC
1 GTGTGCGTGTGC
*
563575 GTTTGCGTGTGC
1 GTGTGCGTGTGC
563587 GTGTGCGTGTGC
1 GTGTGCGTGTGC
563599 GTGTGCGTGTGC
1 GTGTGCGTGTGC
563611 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
563623 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
563635 GTGTGTGTG-GT
1 GTGTGCGTGTGC
* *
563646 GTGTGTGTGTGT
1 GTGTGCGTGTGC
*
563658 GTGTGTGTGTGC
1 GTGTGCGTGTGC
* *
563670 GTGTGTGTGTAC
1 GTGTGCGTGTGC
*
563682 GTGTGCGTG-GT
1 GTGTGCGTGTGC
* *
563693 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
563705 GTGTGTGTGTGT
1 GTGTGCGTGTGC
*
563717 GTGTG-GTGTGT
1 GTGTGCGTGTGC
* *
563728 GTGTGTGTGT-T
1 GTGTGCGTGTGC
* *
563739 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
563751 GT-TGTGTGTTGT
1 GTGTGCGTG-TGC
*
563763 GTGTGTGTGTGC
1 GTGTGCGTGTGC
* *
563775 GTGTG-TTGTGT
1 GTGTGCGTGTGC
* *
563786 GTGTGTGTGT-T
1 GTGTGCGTGTGC
* **
563797 GTGTGTGTGTAT
1 GTGTGCGTGTGC
*
563809 GTGTGCGCGTGC
1 GTGTGCGTGTGC
* *
563821 GCGTG-TTGTGC
1 GTGTGCGTGTGC
*
563832 GTGTGCGT-TGT
1 GTGTGCGTGTGC
563843 GT-TGCGTGTGC
1 GTGTGCGTGTGC
563854 GTGTGCGTGTGC
1 GTGTGCGTGTGC
563866 GTGTGCGCGTGTGC
1 GTGT--GCGTGTGC
*
563880 GCGTGCGTGTGC
1 GTGTGCGTGTGC
563892 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
563904 GTGTGCGCGCGTGC
1 GTGT--GCGTGTGC
*
563918 GTGTGTGT-TGC
1 GTGTGCGTGTGC
*
563929 GTGTGCGTGTGT
1 GTGTGCGTGTGC
*
563941 GTGTGTGTGTG-
1 GTGTGCGTGTGC
* *
563952 TTGTGTGTGTG-
1 GTGTGCGTGTGC
*
563963 TTGTGCGTGT--
1 GTGTGCGTGTGC
* *
563973 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
563985 GTGTGTGTGCGC
1 GTGTGCGTGTGC
563997 GTGTGCGTGTGCGC
1 GTGTGCGTGT--GC
564011 GTGTGCG-GTGC
1 GTGTGCGTGTGC
564022 GTGTGCGTGTGC
1 GTGTGCGTGTGC
564034 GTGTGC--GTGC
1 GTGTGCGTGTGC
564044 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
564056 GCGT--GTGCGC
1 GTGTGCGTGTGC
*
564066 GCGTGCG-GTGC
1 GTGTGCGTGTGC
564077 GTGTGCGTGTGC
1 GTGTGCGTGTGC
564089 --GTGC-TGTGC
1 GTGTGCGTGTGC
564098 GTGTGCGTGTGC
1 GTGTGCGTGTGC
564110 GTGTGCGGTGTTGGC
1 GTGTGC-GTG-T-GC
564125 GTGTGCGTGTGCGC
1 GTGTGCGTGT--GC
* *
564139 GTGCGCGTGCGC
1 GTGTGCGTGTGC
*
564151 GTGTGCGCGTTGC
1 GTGTGCGTG-TGC
564164 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
564176 GTTTGCGTGTGC
1 GTGTGCGTGTGC
564188 GT-TGCGTGTGC
1 GTGTGCGTGTGC
564199 GTGTGCGTGTGC
1 GTGTGCGTGTGC
564211 GTGTGC--GTGC
1 GTGTGCGTGTGC
564221 GTGTGCGTGTGC
1 GTGTGCGTGTGC
564233 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
564245 GTTGTGCGTGTGT
1 G-TGTGCGTGTGC
* *
564258 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
564270 GTGTGTGTGTTGT
1 GTGTGCGTG-TGC
* *
564283 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
564295 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
564307 GTGTGTGTGCGC
1 GTGTGCGTGTGC
* *
564319 GTGTGTGGTGTGT
1 GTGTG-CGTGTGC
* *
564332 GTGTGTGTGTGT
1 GTGTGCGTGTGC
564344 GTGTTCGCGTGTGC
1 GTG-T-GCGTGTGC
564358 GTGTGCGCGTGTGC
1 GTGT--GCGTGTGC
564372 GTGTGCGTGT--
1 GTGTGCGTGTGC
564382 GTGTGCGT-T-C
1 GTGTGCGTGTGC
* *
564392 GCGTGCGCGTGC
1 GTGTGCGTGTGC
564404 GTGTGC--GTGC
1 GTGTGCGTGTGC
564414 GTGTGCGTGTGC
1 GTGTGCGTGTGC
564426 GTGTGCG-GTGC
1 GTGTGCGTGTGC
564437 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
564449 GTGCGCGTGCGC
1 GTGTGCGTGTGC
* *
564461 GTGCGCGTGCGC
1 GTGTGCGTGTGC
*
564473 G-GTGCGTGGCGC
1 GTGTGCGT-GTGC
*
564485 GTGCGCGTGTGC
1 GTGTGCGTGTGC
564497 GTGTGC--GTGC
1 GTGTGCGTGTGC
*
564507 GTGTGCGTGTGTGT
1 GTGTGC--GTGTGC
* *
564521 GTGTGTGTGTGT
1 GTGTGCGTGTGC
564533 GTGTGCGTGT-C
1 GTGTGCGTGTGC
564544 GTGTGCGTGTGC
1 GTGTGCGTGTGC
564556 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
564568 GTGTGCGTGCGC
1 GTGTGCGTGTGC
*
564580 GTGCGCGTGTGC
1 GTGTGCGTGTGC
* *
564592 GCGT--GTGCGC
1 GTGTGCGTGTGC
564602 GTGTGCGTGTGC
1 GTGTGCGTGTGC
564614 GTGTGC--GTGC
1 GTGTGCGTGTGC
* *
564624 GTGTGCGTGCGT
1 GTGTGCGTGTGC
*
564636 GTGCGCGTGTGC
1 GTGTGCGTGTGC
*
564648 GTTTGCGT-TGC
1 GTGTGCGTGTGC
564659 GTGTGCGTGTGC
1 GTGTGCGTGTGC
564671 GTGTGC--GTGC
1 GTGTGCGTGTGC
564681 GTGTGCGTGTGC
1 GTGTGCGTGTGC
564693 GTGTGCGTGTGC
1 GTGTGCGTGTGC
564705 GTGTGCGTGTGC
1 GTGTGCGTGTGC
564717 GTGT--GT-TGC
1 GTGTGCGTGTGC
564726 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
564738 GTGTGCGCGTGCGC
1 GTGT--GCGTGTGC
*
564752 GTGTGCGCGTGC
1 GTGTGCGTGTGC
*
564764 GCGTGTCGTGTGC
1 GTGTG-CGTGTGC
564777 GTGTGCGTGTGC
1 GTGTGCGTGTGC
564789 GTGTGCGTGTGC
1 GTGTGCGTGTGC
564801 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
564813 GTGTGCGGGTGTTGT
1 GTGTGC--GTG-TGC
*
564828 GTGTGTGTGTG-
1 GTGTGCGTGTGC
* *
564839 GTGTG-TTGTGT
1 GTGTGCGTGTGC
* *
564850 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
564862 GTGTG-TTGTGT
1 GTGTGCGTGTGC
* *
564873 GTGTGTGTGTGGT
1 GTGTGCGTGT-GC
*
564886 GTGTGCGCGT--
1 GTGTGCGTGTGC
* *
564896 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
564908 GTGTGTGTGTGT
1 GTGTGCGTGTGC
*
564920 GTGTGCGCGTGC
1 GTGTGCGTGTGC
564932 GTGTGCGCGTGTGC
1 GTGT--GCGTGTGC
*
564946 GTGCGCGTGTGC
1 GTGTGCGTGTGC
*
564958 GT-T-CGCGTGC
1 GTGTGCGTGTGC
*
564968 GCGTGC-TGTGC
1 GTGTGCGTGTGC
*
564979 GCGT--GTGTGC
1 GTGTGCGTGTGC
564989 GTGTGC-TGTGC
1 GTGTGCGTGTGC
565000 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565012 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565024 GTGTGC--GTGC
1 GTGTGCGTGTGC
*
565034 GCGTGCGTGTGC
1 GTGTGCGTGTGC
*
565046 GTGCGCGTGCGCTGC
1 GTGTGCGT--G-TGC
* *
565061 GCGTGCGCGTGC
1 GTGTGCGTGTGC
* *
565073 GCGTGCGTTTGC
1 GTGTGCGTGTGC
565085 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
565097 GTGTGCGTGTGT
1 GTGTGCGTGTGC
* *
565109 GTGTGTGTGTGT
1 GTGTGCGTGTGC
*
565121 GTGTGTGCTGTGC
1 GTGTGCG-TGTGC
565134 GTG-GCGTGTGC
1 GTGTGCGTGTGC
565145 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
565157 GTGTGCGCGTGC
1 GTGTGCGTGTGC
565169 GTG-GCCGTGTGC
1 GTGTG-CGTGTGC
565181 GTGTGCGTGT-C
1 GTGTGCGTGTGC
565192 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565204 GTGTGC--GTGC
1 GTGTGCGTGTGC
* *
565214 GCGTGCGCGTGC
1 GTGTGCGTGTGC
565226 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565238 GT-TGCGTGTGC
1 GTGTGCGTGTGC
565249 GTGTGCG-GTGC
1 GTGTGCGTGTGC
*
565260 GTGTGTGTGTGTGC
1 --GTGTGCGTGTGC
565274 GTGTGC-TGTGC
1 GTGTGCGTGTGC
565285 GT-TGCGTGTGC
1 GTGTGCGTGTGC
565296 GTGTGC-TGTGC
1 GTGTGCGTGTGC
565307 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
565319 GCGTGCGTGTGC
1 GTGTGCGTGTGC
* *
565331 GCGTGCGCGTGC
1 GTGTGCGTGTGC
*
565343 GTGCGTGCGTGTTC
1 GT--GTGCGTGTGC
565357 GTGTGCGCGTGTGGC
1 GTGT--GCGTGT-GC
*
565372 GTGTGCGTTTGC
1 GTGTGCGTGTGC
565384 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565396 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565408 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
565420 TTGTGCGTGTGC
1 GTGTGCGTGTGC
565432 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
565444 --GCGCGTGTGC
1 GTGTGCGTGTGC
565454 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565466 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565478 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565490 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
565502 GCGTGCGCGTGC
1 GTGTGCGTGTGC
* *
565514 GCGT--GTGCGC
1 GTGTGCGTGTGC
565524 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565536 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565548 GTGTGCGTTTGCTGC
1 GTGTGCG--TG-TGC
565563 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565575 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565587 -TGTGCGTGTGC
1 GTGTGCGTGTGC
565598 GTGTGC-TGTGC
1 GTGTGCGTGTGC
*
565609 GTGTGCGTGTGT
1 GTGTGCGTGTGC
* *
565621 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
565633 GTGTGTGGTGTGT
1 GTGTG-CGTGTGC
* *
565646 GTGTGTGTGTGT
1 GTGTGCGTGTGC
565658 GTGTGCGTGTG-
1 GTGTGCGTGTGC
* * *
565669 TTGTG-TTGTAC
1 GTGTGCGTGTGC
* *
565680 GTGTGCGGGTGT
1 GTGTGCGTGTGC
* *
565692 GTGTGTGTGTGTT
1 GTGTGCGTGTG-C
* *
565705 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
565717 GTGTGTGTGTTGT
1 GTGTGCGTG-TGC
*
565730 GTGTG-GTGTGT
1 GTGTGCGTGTGC
* *
565741 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
565753 GTGT-TGTGTGT
1 GTGTGCGTGTGC
* *
565764 GT-TGTGTGTGT
1 GTGTGCGTGTGC
* *
565775 ATGTGCGTGTGTT
1 GTGTGCGTGTG-C
* *
565788 GTGTGTGTGTGTTT
1 GTGTGCGTGTG--C
* * *
565802 GTGTGTGTATGT
1 GTGTGCGTGTGC
* *
565814 GTGCGCGTGCGC
1 GTGTGCGTGTGC
565826 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565838 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565850 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
565862 GCGT--GTGCGC
1 GTGTGCGTGTGC
*
565872 GTGTGCGCGTGC
1 GTGTGCGTGTGC
565884 GTGTGCGTGTGC
1 GTGTGCGTGTGC
565896 GTGTGCGT-TGC
1 GTGTGCGTGTGC
* *
565907 GTCGTGCTTGTGT
1 GT-GTGCGTGTGC
565920 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
565932 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
565944 GTGTGTGTGTGTT
1 GTGTGCGTGTG-C
* *
565957 GTGTGTGGTTGTGT
1 GTGTG-CG-TGTGC
* *
565971 GTGTGTGTGTGT
1 GTGTGCGTGTGC
*
565983 GTGCGCGTGTGC
1 GTGTGCGTGTGC
565995 GTGTGCGCGTGTGC
1 GTGT--GCGTGTGC
566009 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566021 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566033 GTGTGCGCGTGTGC
1 GTGT--GCGTGTGC
566047 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
566059 GTTTGCGTGTGC
1 GTGTGCGTGTGC
566071 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566083 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566095 --GTGCGTGTGC
1 GTGTGCGTGTGC
* *
566105 GTGCGCGCGT--
1 GTGTGCGTGTGC
566115 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566127 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
566139 GTGCGCAGCGTGC
1 GTGTGC-GTGTGC
566152 --GTGCGTGTGC
1 GTGTGCGTGTGC
566162 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566174 GT-TGCGTG-GC
1 GTGTGCGTGTGC
566184 GTGTGTGCGTGTGC
1 --GTGTGCGTGTGC
*
566198 GGCGTGCGTG-G-
1 -GTGTGCGTGTGC
566209 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
566221 GT-T--GTGTGT
1 GTGTGCGTGTGC
* *
566230 GTGTGTGTGTGT
1 GTGTGCGTGTGC
566242 GTGTCGCGTGTGC
1 GTGT-GCGTGTGC
*
566255 GTGCGCGTGTGC
1 GTGTGCGTGTGC
566267 GTGTGTGCGTGTGC
1 --GTGTGCGTGTGC
566281 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566293 GTGTGC-TGTGC
1 GTGTGCGTGTGC
566304 GTGTGCGTGTG-
1 GTGTGCGTGTGC
*
566315 TTGTGCGTGTGC
1 GTGTGCGTGTGC
566327 --GTGCGTGTGC
1 GTGTGCGTGTGC
* *
566337 G-CTGCGCGTGC
1 GTGTGCGTGTGC
* * *
566348 GCGCGCGTGCGC
1 GTGTGCGTGTGC
566360 GTGT--GTGTGC
1 GTGTGCGTGTGC
566370 GTG-GCGTGTGC
1 GTGTGCGTGTGC
566381 GTGTGC-T-TGC
1 GTGTGCGTGTGC
566391 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566403 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566415 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566427 GTGTGCGTTGTGC
1 GTGTGCG-TGTGC
566440 --GTGCGTGTGC
1 GTGTGCGTGTGC
566450 GTGTGTGCGTGTGC
1 --GTGTGCGTGTGC
*
566464 GGTGTGCGTGTGT
1 -GTGTGCGTGTGC
* *
566477 GTG-GTGTGTGT
1 GTGTGCGTGTGC
* *
566488 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* * *
566500 TTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
566512 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
566524 GTGTGTGTGTGT
1 GTGTGCGTGTGC
*
566536 GTGGCGCGTGTGC
1 GT-GTGCGTGTGC
*
566549 GTGTGCGCGTGCGC
1 GTGT--GCGTGTGC
*
566563 GTGTGCGTGCGC
1 GTGTGCGTGTGC
* *
566575 GTGCGCGTGCGC
1 GTGTGCGTGTGC
566587 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566599 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566611 GTGTGCGTG-GC
1 GTGTGCGTGTGC
*
566622 GCGTGTCGTGTGC
1 GTGTG-CGTGTGC
*
566635 --GTGCGCGTGC
1 GTGTGCGTGTGC
* * *
566645 GCGTGCGCGCGC
1 GTGTGCGTGTGC
*
566657 GCGTGCGTGTGC
1 GTGTGCGTGTGC
566669 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566681 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566693 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
566705 GTGT-TGTGT-C
1 GTGTGCGTGTGC
* * *
566715 GCGAGCGCGTGC
1 GTGTGCGTGTGC
* * * *
566727 GCGCGCGCGCGC
1 GTGTGCGTGTGC
566739 GTGTG-GTGTGC
1 GTGTGCGTGTGC
*
566750 GTGTGCGCGTGCGC
1 GTGT--GCGTGTGC
* *
566764 GTGTGCGAGAGTGA
1 GTGTGC--GTGTGC
*
566778 GTGTGC--GTGA
1 GTGTGCGTGTGC
* *
566788 GTGTGAGTGTGA
1 GTGTGCGTGTGC
*
566800 GTGTGCGTGTGA
1 GTGTGCGTGTGC
566812 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566824 GTGTGCGTGATGTGC
1 GTGTGC--G-TGTGC
566839 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
566851 GTGTGCGTGTGA
1 GTGTGCGTGTGC
*
566863 GTGTGAGTGTG-
1 GTGTGCGTGTGC
566874 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
566886 GTGTGAGTGTGC
1 GTGTGCGTGTGC
566898 GTGTGCGTGTGC
1 GTGTGCGTGTGC
566910 GTGTG-GTGTGC
1 GTGTGCGTGTGC
* *
566921 GTGTGAG-GTGA
1 GTGTGCGTGTGC
*
566932 GTGTG-GTGTGT
1 GTGTGCGTGTGC
* *
566943 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
566955 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
566967 GTGTGTGTTGTGT
1 GTGTGCG-TGTGC
* *
566980 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
566992 GTGTGTGTGGTGT
1 GTGTGCGT-GTGC
*
567005 GTGTGTGTGTG-
1 GTGTGCGTGTGC
* *
567016 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
567028 GTGTG-TTGTGT
1 GTGTGCGTGTGC
* *
567039 GTGTGTGTGTGT
1 GTGTGCGTGTGC
* *
567051 GTGTGTGTGTGG
1 GTGTGCGTGTGC
* *
567063 GTGTGTGTGTGT
1 GTGTGCGTGTGC
*
567075 GTG-GTGTGTGC
1 GTGTGCGTGTGC
*
567086 GTGTGCGTGTGGT
1 GTGTGCGTGT-GC
567099 GTGTGCGTGTGC
1 GTGTGCGTGTGC
567111 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
567123 GTGTGAGTGTGC
1 GTGTGCGTGTGC
567135 GTGTGCGTGTGC
1 GTGTGCGTGTGC
* *
567147 GTGTGAGTGTGA
1 GTGTGCGTGTGC
567159 GTGTGCGTGTGC
1 GTGTGCGTGTGC
*
567171 GTG-GCGTGCGC
1 GTGTGCGTGTGC
* *
567182 GTGGTGTGAAGTGC
1 GT-GTGCG-TGTGC
*
567196 GCGTGCGTGAGTGC
1 GTGTGCGT--GTGC
*
567210 GCGTTGCTGTGTGC
1 GTG-TGC-GTGTGC
*
567224 GTGTGAGTGTGC
1 GTGTGCGTGTGC
*
567236 G-GTGCGTGCGC
1 GTGTGCGTGTGC
*
567247 GTGTGTGTGTGC
1 GTGTGCGTGTGC
*
567259 GTGTGTGTGTGC
1 GTGTGCGTGTGC
*
567271 GTGTGCGT-TGT
1 GTGTGCGTGTGC
*
567282 GTG-GCGTGCGC
1 GTGTGCGTGTGC
*
567293 GTGCGCGTGTGC
1 GTGTGCGTGTGC
567305 GTGTGTGCGTGTG-
1 --GTGTGCGTGTGC
*
567318 TTGTGCGTGT--
1 GTGTGCGTGTGC
567328 GTGTGCGTGT--
1 GTGTGCGTGTGC
*
567338 GTGTGCGTGTGT
1 GTGTGCGTGTGC
*
567350 GTTGTGCGTGTGT
1 G-TGTGCGTGTGC
* *
567363 GCGTGTGTGTGC
1 GTGTGCGTGTGC
567375 GTGT--GTGTGC
1 GTGTGCGTGTGC
567385 GTGT--GTGTGC
1 GTGTGCGTGTGC
567395 GTGT--GTGTGC
1 GTGTGCGTGTGC
567405 GTGT--GTGTGC
1 GTGTGCGTGTGC
* *
567415 GTGTGTGTGTGT
1 GTGTGCGTGTGC
*
567427 GTGTGTGTGTG
1 GTGTGCGTGTG
567438 AACTAGAATA
Statistics
Matches: 6611, Mismatches: 625, Indels: 829
0.82 0.08 0.10
Matches are distributed among these distances:
9 38 0.01
10 586 0.09
11 1039 0.16
12 3990 0.60
13 451 0.07
14 408 0.06
15 80 0.01
16 14 0.00
18 5 0.00
ACGTcount: A:0.01, C:0.15, G:0.49, T:0.35
Consensus pattern (12 bp):
GTGTGCGTGTGC
Found at i:560330 original size:18 final size:18
Alignment explanation
Indices: 559776--567437 Score: 6738
Period size: 18 Copynumber: 431.3 Consensus size: 18
559766 GAATGTATGT
* *
559776 GTGTGTGTGTG-GTGTGT
1 GTGTGCGTGTGCGTGTGC
* *
559793 GTGTGTGTGGTG-GTGTGT
1 GTGTGCGT-GTGCGTGTGC
* * *
559811 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
559829 GTTGTGTGTGTGTGTGTGT
1 G-TGTGCGTGTGCGTGTGC
* * *
559848 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* *
559866 GTGTGTGTGTG-GTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
559883 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
559901 GTGTGTG-GTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* *
559918 GTGTGTGTGTG-GTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
559935 GTGTGTGTGTGTGTG-GT
1 GTGTGCGTGTGCGTGTGC
* * *
559952 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
559970 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
559988 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
560006 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
560024 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
560042 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* *
560060 GTGTG-GTGTGTGTGTGG
1 GTGTGCGTGTGCGTGTGC
* *
560077 GTGGTGTGTGTGTGTGTG-
1 GT-GTGCGTGTGCGTGTGC
* *
560095 GTGTGTGTGTGTGTGGTG-
1 GTGTGCGTGTGCGT-GTGC
* * * *
560113 TTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
560131 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
560149 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
560167 GTGTGTGTGTGGGTGTGT
1 GTGTGCGTGTGCGTGTGC
*
560185 GTGTGGTGGTGTGCGTGTG-
1 GTGT-G-CGTGTGCGTGTGC
560204 GTGTG-GTGTGCGTTGTGC
1 GTGTGCGTGTGCG-TGTGC
* *
560222 GTG-GAGAGT-CGTGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
560238 GAGTGCGAGT--GTGCGC
1 GTGTGCGTGTGCGTGTGC
* *
560254 GTGTGAGGTGTG-GAGTCGC
1 GTGTG-CGTGTGCGTGT-GC
560273 G-GTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* * * *
560290 GTGTGGGAGTGTG-GTGT
1 GTGTGCGTGTGCGTGTGC
* *
560307 GTGTGCTTGTGGGTGTGC
1 GTGTGCGTGTGCGTGTGC
560325 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
560343 GTGT--GTGTGTGTG-GT
1 GTGTGCGTGTGCGTGTGC
560358 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
560376 GTGTGCGTGCGCGTGCGC
1 GTGTGCGTGTGCGTGTGC
560394 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
560412 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
560430 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
560448 GTGTGCGTGTGCGCGGGC
1 GTGTGCGTGTGCGTGTGC
* * *
560466 GTGCGCGTGCGCGTGCGAGC
1 GTGTGCGTGTGCGT--GTGC
*
560486 GCGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
560504 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
560522 GTGTGTGCGTGTGCGTGTGC
1 --GTGTGCGTGTGCGTGTGC
*
560542 GTGTCGGCGTGT--GTGTGT
1 GTGT--GCGTGTGCGTGTGC
*
560560 GTGTG-TTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
560577 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
560595 GTGTGCGTG-GCGCCGCGC
1 GTGTGCGTGTGCG-TGTGC
*
560613 GCTGTACGTGTGCGTGTGCGC
1 G-TGTGCGTGTGCGTGT--GC
*
560634 GTGTGCGTGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
*
560652 G-CTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
560669 GTGTGCGTGT--GTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
560685 GTGTAC-TGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
* *
560702 GCTGTGCGCGGTGCGCGTGC
1 G-TGTGCG-TGTGCGTGTGC
560722 GTGTGCGTGTGCGTGTGTGC
1 GTGTGCGTGTGC--GTGTGC
560742 GTGT-CGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
560759 GTGAGTGTGTGTGTGTTGTGT
1 GT--GTGCGTGTGCG-TGTGC
* *
560780 GTGTGTGTGTG-GTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
560797 GTGT-TGTGTGTGTGCGC
1 GTGTGCGTGTGCGTGTGC
560814 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
560832 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
560850 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
560868 GTGTGCGTGTGTGTGTG-
1 GTGTGCGTGTGCGTGTGC
* *
560885 TTGTGCGTGTG-TTGTGC
1 GTGTGCGTGTGCGTGTGC
560902 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
560920 GTGTGCGCGTGTGCGTGC
1 GTGTGCGTGTGCGTGTGC
560938 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
560956 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
560974 GTGTGCGCGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
*
560992 GCGTGCGTGTGC-TGTGC
1 GTGTGCGTGTGCGTGTGC
561009 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
561027 --GTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
561043 GTGTGCGCGTGCGCGTGGC
1 GTGTGCGTGTGCGTGT-GC
561062 GTGTGCGCGTGTGCGTGTGC
1 GTGT--GCGTGTGCGTGTGC
561082 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
561100 GTGTGTGCGTGTGCGTTTGC
1 --GTGTGCGTGTGCGTGTGC
*
561120 GTGTTCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
561138 GTGTGCGTGTGCGTGTTGC
1 GTGTGCGTGTGCGTG-TGC
561157 --GTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
561173 -TGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
561190 GTGTGCGTGTG-TTGTGC
1 GTGTGCGTGTGCGTGTGC
*
561207 TTGTTGTGCGTGTGCGCGTGC
1 --G-TGTGCGTGTGCGTGTGC
*
561228 GCGTGCGCTGTGCGCGTGTGC
1 GTGTGCG-TGT--GCGTGTGC
561249 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
561267 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
561285 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
561303 G-GTGCGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
561320 GTGTGTGT-TGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
561337 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
561355 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
561373 GTGTGTGTGCGCGTGTGT
1 GTGTGCGTGTGCGTGTGC
* *
561391 GTGTGTGGTGTGCGCGT--
1 GTGTG-CGTGTGCGTGTGC
561408 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
561426 GCGT--GTGCGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
561442 GTGTGCGT-TGCGTGT--
1 GTGTGCGTGTGCGTGTGC
561457 GTGTGCGTGTGCGTGCGTGC
1 GTGTGCGTGTGCGT--GTGC
* * *
561477 GCGTGCGCGTGCGTGCGC
1 GTGTGCGTGTGCGTGTGC
* * *
561495 GTGCGCGTGCG-GTGGTGT
1 GTGTGCGTGTGCGT-GTGC
*
561513 GTGTGTGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
561531 GTGTGC-TGTTGCGTGTGC
1 GTGTGCGTG-TGCGTGTGC
*
561549 GTGTGCGCGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
561567 GCGT--GTGCGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
561583 GTGTGCGTGTGCGTGT--
1 GTGTGCGTGTGCGTGTGC
*
561599 GTGCGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
561617 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
561635 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
561653 GTGTG-TTGTGCGTGTTC
1 GTGTGCGTGTGCGTGTGC
561670 GTGTGCGTGTTGCGTGTGC
1 GTGTGCGTG-TGCGTGTGC
* * *
561689 GCGTGCGCGTGCGCGT--
1 GTGTGCGTGTGCGTGTGC
* *
561705 GTGCGCGTGTACGTGTGC
1 GTGTGCGTGTGCGTGTGC
561723 GTGTGCGTGTGCGTTGTGC
1 GTGTGCGTGTGCG-TGTGC
* *
561742 GTTTGC-TGTGCGTGTGTT
1 GTGTGCGTGTGCGTGTG-C
561760 GTGTGCGTGTGC-TGTGC
1 GTGTGCGTGTGCGTGTGC
561777 GTGTGCGTGTGCGTGT--
1 GTGTGCGTGTGCGTGTGC
* * *
561793 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* *
561811 GTGTGTGTGCGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
561829 GTGCGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
561847 GTGTGCGTGCTGC--GTGC
1 GTGTGCGTG-TGCGTGTGC
* *
561864 GCGTGCGTGTGCGTGCGC
1 GTGTGCGTGTGCGTGTGC
*
561882 GTGCGCGTGTGCGTGCTGGCGC
1 GTGTGCGTGTGCGTG-T---GC
* *
561904 GTGTCCGCGTGCGCGTGCGC
1 GTGT--GCGTGTGCGTGTGC
*
561924 GTGTGC--GTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
561940 GCGTGCGCGTGCGTGCGC
1 GTGTGCGTGTGCGTGTGC
*
561958 GTGTGCGTGTGCGCGTGCGC
1 GTGTGCGTGT--GCGTGTGC
* *
561978 GTGCGCGTGGCGCGTGTGC
1 GTGTGCGT-GTGCGTGTGC
*
561997 GCGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562015 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562033 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
562051 GTGCGCGTGTGCGCTGTGCGC
1 GTGTGCGTGTGCG-TGT--GC
*
562072 GGTGCGCGTGTGCGTGTGC
1 -GTGTGCGTGTGCGTGTGC
562091 --GTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
562107 GTGTGCGTGTG-TTGTGC
1 GTGTGCGTGTGCGTGTGC
*
562124 GTGTGCGTGTGCTTGTGC
1 GTGTGCGTGTGCGTGTGC
562142 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
562160 GTGTGCGTGTG-TTGTGT
1 GTGTGCGTGTGCGTGTGC
*
562177 GTGTG-TTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
562194 GTGCGTGTGCGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
562212 GTGTGCGCGTGTGCGCGTGC
1 GTGT--GCGTGTGCGTGTGC
* * *
562232 -CGTGCGCTGCGCGTGCGC
1 GTGTGCG-TGTGCGTGTGC
* *
562250 GTGCGCGTGCGCGT-T-C
1 GTGTGCGTGTGCGTGTGC
* * *
562266 GCGTGCGCG-GCGCGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
562283 GCGTGCGCGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
*
562301 GTGTGCGTGTG-TTGTGC
1 GTGTGCGTGTGCGTGTGC
*
562318 GTGTG-TTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562335 GTGTGC--GTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562351 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562369 GTGTGCGTGTGC--GTGC
1 GTGTGCGTGTGCGTGTGC
* * * *
562385 GTGTGCGCG-CCGCGCGC
1 GTGTGCGTGTGCGTGTGC
*
562402 GTGTACGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
562420 GCGT--GTGCGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* * * *
562436 GCGTTCGCGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
562454 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562472 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
562490 GCGTGCGCGT--GTGCGC
1 GTGTGCGTGTGCGTGTGC
*
562506 GTGTGCGCGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562524 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562542 GTGTGCGTGTGCG-GTGC
1 GTGTGCGTGTGCGTGTGC
* *
562559 GTGCGTGCGTGTGTGTGTGT
1 GT--GTGCGTGTGCGTGTGC
* * *
562579 GTGTG-TTGTTGTGTGTGGT
1 GTGTGCGTG-TGCGTGT-GC
*
562598 GTGTGTGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562616 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562634 GTG-GC--GTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
562649 GTGTGCGTGTGTGTGTG-
1 GTGTGCGTGTGCGTGTGC
*
562666 TTGTGCGTGT--GTGTGC
1 GTGTGCGTGTGCGTGTGC
562682 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
562700 GTGCGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562718 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
562736 -TGTGCGTGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
* *
562753 GCGTGCGCGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562771 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562789 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
562807 GTGTGCGTGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
* *
562825 GCGTGCGTGTGCGCGT--
1 GTGTGCGTGTGCGTGTGC
*
562841 GTGCGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562859 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
562877 GCGT--GTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
562893 GTTTGCGTGT-CGTGTGC
1 GTGTGCGTGTGCGTGTGC
562910 -TGTGCGT-TGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562926 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
562944 GTGTGCGTGTGCGTGT--
1 GTGTGCGTGTGCGTGTGC
562960 GT-TGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
562977 GTGTGCGCGTTCGCGTGCGC
1 GTGTGCGTG-T-GCGTGTGC
562997 GTGTGCGCGTGTGCGTGTGC
1 GTGT--GCGTGTGCGTGTGC
563017 --GTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
563033 GTTTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
563051 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
563069 GTGTGCG-GTGTGTGCGC
1 GTGTGCGTGTGCGTGTGC
* * *
563086 GTGTTGTGTGTGTGTGTGT
1 GTG-TGCGTGTGCGTGTGC
* * *
563105 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
563123 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
563141 GCGCGCGTGTGTGTGTG-
1 GTGTGCGTGTGCGTGTGC
* * * *
563158 TTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
*
563176 GTGCGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
563194 GTGTGCGCGTGTGCGTGC
1 GTGTGCGTGTGCGTGTGC
563212 GTGTGCGTGTGCGT-T-C
1 GTGTGCGTGTGCGTGTGC
* *
563228 GCGT-CGCGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
563245 GTGTGCGTGTGCGTGCGC
1 GTGTGCGTGTGCGTGTGC
* * *
563263 GTGCGCGTGCGCGTGCGC
1 GTGTGCGTGTGCGTGTGC
* *
563281 G-GCGCGTGCGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
563298 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
563316 G-GTGCGTGTGTGTGTGGT
1 GTGTGCGTGTGCGTGT-GC
* *
563334 GTGTGTGTGTGCGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
563352 TTGTGTGTGTGCGTTTGC
1 GTGTGCGTGTGCGTGTGC
563370 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
563388 GTGTGCGCGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
563406 GCGT--GTGCGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
563422 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
563440 GTGTGC--GCGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
563456 GTGTGCGTGTGCGTGT-C
1 GTGTGCGTGTGCGTGTGC
*
563473 GTGTGCGTGTGCGGGTGC
1 GTGTGCGTGTGCGTGTGC
563491 GTGTGCG-GTGGCGTGTGC
1 GTGTGCGTGT-GCGTGTGC
*
563509 GTGTG-TTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
563526 -TGTGCGTGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
563543 GCGTGCGCGT--GTGCGC
1 GTGTGCGTGTGCGTGTGC
563559 GTGTGCG-GTGC-TGTGC
1 GTGTGCGTGTGCGTGTGC
*
563575 GTTTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
563593 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
563611 GTGTGCGTGTGCGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
563629 GTGTGTGTGTGTGTG-GT
1 GTGTGCGTGTGCGTGTGC
* * *
563646 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* *
563664 GTGTGCGTGTGTGTGTAC
1 GTGTGCGTGTGCGTGTGC
* *
563682 GTGTGCGTG-GTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
563699 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* *
563717 GTGTG-GTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
563734 GTGT-TGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
563751 GT-TGTGTGTTGTGTGTGT
1 GTGTGCGTG-TGCGTGTGC
* *
563769 GTGTGCGTGTG-TTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
563786 GTGTGTGTGT-TGTGTGT
1 GTGTGCGTGTGCGTGTGC
** *
563803 GTGTATGTGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
* *
563821 GCGTG-TTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
563838 GT-TGTGT-TGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
563854 GTGTGCGTGTGCGTGTGCGC
1 GTGTGCGTGTGCGTGT--GC
*
563874 GTGTGCGCGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
563892 GTGTGCGTGTGCGTGTGCGC
1 GTGTGCGTGTGCGTGT--GC
* *
563912 GCGTGCGTGTGTGT-TGC
1 GTGTGCGTGTGCGTGTGC
* *
563929 GTGTGCGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* *
563947 GTGTG-TTGTGTGTGTG-
1 GTGTGCGTGTGCGTGTGC
* *
563963 TTGTGCGTGT--GTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
563979 GTGTGTGTGTGTGTGCGC
1 GTGTGCGTGTGCGTGTGC
563997 GTGTGCGTGTGCGCGTGTGC
1 GTGTGCGTGT--GCGTGTGC
564017 G-GTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
564034 GTGTGC--GTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
564050 GTGTGCGCGT--GTGCGC
1 GTGTGCGTGTGCGTGTGC
*
564066 GCGTGCG-GTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
564083 GTGTGC--GTGC-TGTGC
1 GTGTGCGTGTGCGTGTGC
564098 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
564116 GGTGTTGGCGTGTGCGTGTGCGC
1 -GTG-T-GCGTGTGCGTGT--GC
* *
564139 GTGCGCGTGCGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
564157 GCGTTGCGTGTGCGTGTGC
1 GTG-TGCGTGTGCGTGTGC
*
564176 GTTTGCGTGTGCGT-TGC
1 GTGTGCGTGTGCGTGTGC
564193 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
564211 GTGTGC--GTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
564227 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
564245 GTTGTGCGTGTGTGTGTGT
1 G-TGTGCGTGTGCGTGTGC
* * *
564264 GTGTGTGTGTGTGTGTTGT
1 GTGTGCGTGTGCGTG-TGC
* * *
564283 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
564301 GTGTGTGTGTGTGTGCGC
1 GTGTGCGTGTGCGTGTGC
* * *
564319 GTGTGTGGTGTGTGTGTGT
1 GTGTG-CGTGTGCGTGTGC
*
564338 GTGTGTGTGTTCGCGTGTGC
1 GTGTGCGTG-T-GCGTGTGC
564358 GTGTGCGCGTGTGCGTGTGC
1 GTGT--GCGTGTGCGTGTGC
564378 GTGT--GTGTGCGT-T-C
1 GTGTGCGTGTGCGTGTGC
* *
564392 GCGTGCGCGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
564410 --GTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
564426 GTGTGCG-GTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
564443 GTGTGCGTGCGCGTGCGC
1 GTGTGCGTGTGCGTGTGC
* *
564461 GTGCGCGTGCGCG-GTGC
1 GTGTGCGTGTGCGTGTGC
* *
564478 GTGGCGCGTGCGCGTGTGC
1 GT-GTGCGTGTGCGTGTGC
564497 GTGTGC--GTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
564513 GTGTGTGTGTGTGTGTGTGT
1 --GTGTGCGTGTGCGTGTGC
564533 GTGTGCGTGT-CGTGTGC
1 GTGTGCGTGTGCGTGTGC
564550 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
564568 GTGTGCGTGCGCGTGCGC
1 GTGTGCGTGTGCGTGTGC
* *
564586 GTGTGCGCGT--GTGCGC
1 GTGTGCGTGTGCGTGTGC
564602 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
564620 --GTGCGTGTGCGTGCGT
1 GTGTGCGTGTGCGTGTGC
* *
564636 GTGCGCGTGTGCGTTTGC
1 GTGTGCGTGTGCGTGTGC
564654 GT-TGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
564671 GTGTGC--GTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
564687 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
564705 GTGTGCGTGTGCGTGT--
1 GTGTGCGTGTGCGTGTGC
564721 GT-TGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
564738 GTGTGCGCGTGCGCGTGTGC
1 GTGT--GCGTGTGCGTGTGC
* *
564758 GCGTGCGCGTGTCGTGTGC
1 GTGTGCGTGTG-CGTGTGC
564777 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
564795 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
564813 GTGTGCGGGTGTTGTGTGTGT
1 GTGTGC--GTG-TGCGTGTGC
* *
564834 GTGTG-GTGTG-TTGTGT
1 GTGTGCGTGTGCGTGTGC
* *
564850 GTGTGTGTGTGTGTGTG-
1 GTGTGCGTGTGCGTGTGC
* * * *
564867 TTGTGTGTGTGTGTGTGGT
1 GTGTGCGTGTGCGTGT-GC
* *
564886 GTGTGCGCGT--GTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
564902 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
*
564920 GTGTGCGCGTGCGTGTGCGC
1 GTGTGCGTGTGCGTGT--GC
*
564940 GTGTGCGTGCGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
564958 GT-T-CGCGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
*
564974 -TGTGCGCGT--GTGTGC
1 GTGTGCGTGTGCGTGTGC
564989 GTGTGC-TGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
565006 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
565024 GTGTGC--GTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
*
565040 GTGTGCGTGCGCGTGCGCTGC
1 GTGTGCGTGTGCGT--G-TGC
* * *
565061 GCGTGCGCGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
*
565079 GTTTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
565097 GTGTGCGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* *
565115 GTGTGTGTGTGTGCTGTGC
1 GTGTGCGTGTGCG-TGTGC
565134 GTG-GCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
565151 GTGTGCGTGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
565169 GTG-GCCGTGTGCGTGTGC
1 GTGTG-CGTGTGCGTGTGC
565187 GTGT-CGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
565204 GTGTGC--GTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
*
565220 GCGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
565238 GT-TGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
565255 G-GTGCGTGTGTGTGTGTGC
1 GTGTGC--GTGTGCGTGTGC
565274 GTGTGC-TGTGCGT-TGC
1 GTGTGCGTGTGCGTGTGC
565290 GTGTGCGTGTGC-TGTGC
1 GTGTGCGTGTGCGTGTGC
*
565307 GTGTGCGTGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
* *
565325 GTGTGCGCGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
*
565343 GTGCGTGCGTGTTCGTGTGCGC
1 GT--GTGCGTGTGCGTGT--GC
*
565365 GTGTGGCGTGTGCGTTTGC
1 GTGT-GCGTGTGCGTGTGC
565384 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
565402 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
565420 TTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
565438 GTGTGC--GCGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
565454 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
565472 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
565490 GTGTGCGTGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
565508 GCGTGCGCGT--GTGCGC
1 GTGTGCGTGTGCGTGTGC
565524 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
565542 GTGTGCGTGTGCGTTTGCTGC
1 GTGTGCGTGTGCG--TG-TGC
565563 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
565581 GTGTGC-TGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
565598 GTGTGC-TGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
565615 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
565633 GTGTGTGGTGTGTGTGTGT
1 GTGTG-CGTGTGCGTGTGC
*
565652 GTGTGTGTGTGCGTGTG-
1 GTGTGCGTGTGCGTGTGC
* * *
565669 TTGTG-TTGTACGTGTGC
1 GTGTGCGTGTGCGTGTGC
* * * *
565686 GGGTGTGTGTGTGTGTGTT
1 GTGTGCGTGTGCGTGTG-C
* * *
565705 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* *
565723 GTGTTGTGTGTG-GTGTGT
1 GTG-TGCGTGTGCGTGTGC
* * *
565741 GTGTGTGTGTGTGTGT-T
1 GTGTGCGTGTGCGTGTGC
* * *
565758 GTGTGTGT-TGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
565775 ATGTGCGTGTGTTGTGTGT
1 GTGTGCGTGTG-CGTGTGC
* * * *
565794 GTGTGTTTGTGTGTGTATGT
1 GTGTG--CGTGTGCGTGTGC
* *
565814 GTGCGCGTGCGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
565832 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
565850 GTGTGCGTGTGCGCGT--
1 GTGTGCGTGTGCGTGTGC
* *
565866 GTGCGCGTGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
565884 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
565902 GT-TGCGTCGTGCTTGTGT
1 GTGTGCGT-GTGCGTGTGC
*
565920 GTGTGCGTGTGCGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
565938 GTGTGTGTGTGTGTGTGTT
1 GTGTGCGTGTGCGTGTG-C
* * *
565957 GTGTGTGGTTGTGTGTGTGT
1 GTGTG-CG-TGTGCGTGTGC
* *
565977 GTGTGTGTGCGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
565995 GTGTGCGCGTGTGCGTGTGC
1 GTGT--GCGTGTGCGTGTGC
566015 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
566033 GTGTGCGCGTGTGCGTGTGC
1 GTGT--GCGTGTGCGTGTGC
*
566053 GTGTGCGTTTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
566071 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
566089 GTGTGC--GTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
566105 GTGCGCGCGT--GTGTGC
1 GTGTGCGTGTGCGTGTGC
566121 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
566139 GTGCGCAGCGTGC--GTGC
1 GTGTGC-GTGTGCGTGTGC
566156 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
566174 GT-TGCGTG-GCGTGTGTGC
1 GTGTGCGTGTGC--GTGTGC
*
566192 GTGTGCGGCGTGCGTG-G-
1 GTGTGC-GTGTGCGTGTGC
566209 GTGTGCGTGTGCGT-T--
1 GTGTGCGTGTGCGTGTGC
* * *
566224 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
*
566242 GTGTCGCGTGTGCGTGCGC
1 GTGT-GCGTGTGCGTGTGC
566261 GTGTGCGTGTGTGCGTGTGC
1 GTGTGC--GTGTGCGTGTGC
566281 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
566299 -TGTGCGTGTGCGTGTG-
1 GTGTGCGTGTGCGTGTGC
*
566315 TTGTGCGTGTGC--GTGC
1 GTGTGCGTGTGCGTGTGC
* *
566331 GTGTGCG-CTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
566348 GCGCGCGTGCGCGTGT--
1 GTGTGCGTGTGCGTGTGC
566364 GTGTGCGTG-GCGTGTGC
1 GTGTGCGTGTGCGTGTGC
566381 GTGTGC-T-TGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
566397 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
566415 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
566433 GTTGTGC--GTGCGTGTGC
1 G-TGTGCGTGTGCGTGTGC
566450 GTGTGTGCGTGTGCGGTGTGC
1 --GTGTGCGTGTGC-GTGTGC
* * *
566471 GTGTGTGTG-GTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* ** *
566488 GTGTGTGTGTGTTTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
566506 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
566524 GTGTGTGTGTGTGTGGCGC
1 GTGTGCGTGTGCGT-GTGC
*
566543 GTGTGCGTGTGCGCGTGCGC
1 GTGTGCGTGT--GCGTGTGC
* *
566563 GTGTGCGTGCGCGTGCGC
1 GTGTGCGTGTGCGTGTGC
*
566581 GTGCGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
566599 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
566617 GTG-GCGCGTGTCGTGTGC
1 GTGTGCGTGTG-CGTGTGC
* *
566635 --GTGCGCGTGCGCGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
566651 GCGCGCGCGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
566669 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
566687 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
566705 GTGT-TGTGT-CGCGAGC
1 GTGTGCGTGTGCGTGTGC
* * * * *
566721 GCGTGCGCGCGCGCGCGC
1 GTGTGCGTGTGCGTGTGC
566739 GTGTG-GTGTGCGTGTGCGC
1 GTGTGCGTGTGCGTGT--GC
* * *
566758 GTGCGCGTGTGCGAGAGTGA
1 GTGTGCGTGTGC--GTGTGC
* *
566778 GTGTGC--GTGAGTGTGA
1 GTGTGCGTGTGCGTGTGC
* *
566794 GTGTGAGTGTGCGTGTGA
1 GTGTGCGTGTGCGTGTGC
566812 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
566830 GTGATGTGCGTGTGCGTGTGC
1 --G-TGTGCGTGTGCGTGTGC
* *
566851 GTGTGCGTGTGAGTGTGA
1 GTGTGCGTGTGCGTGTGC
566869 GTGTG-GTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
566886 GTGTGAGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
566904 GTGTGCGTGTG-GTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
566921 GTGTGAG-GTGAGTGTG-
1 GTGTGCGTGTGCGTGTGC
* * *
566937 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
566955 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
566973 GTTGTGTGTGTGTGTGTGT
1 G-TGTGCGTGTGCGTGTGC
* * *
566992 GTGTGTGTGGTGTGTGTGT
1 GTGTGCGT-GTGCGTGTGC
* *
567011 GTGTG-GTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
567028 GTGTG-TTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
567045 GTGTGTGTGTGTGTGTGG
1 GTGTGCGTGTGCGTGTGC
* * *
567063 GTGTGTGTGTGTGTG-GT
1 GTGTGCGTGTGCGTGTGC
*
567080 GTGTGCGTGTGCGTGTGGT
1 GTGTGCGTGTGCGTGT-GC
567099 GTGTGCGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
567117 GTGTGCGTGTGAGTGTGC
1 GTGTGCGTGTGCGTGTGC
*
567135 GTGTGCGTGTGCGTGTGA
1 GTGTGCGTGTGCGTGTGC
*
567153 GTGTGAGTGTGCGTGTGC
1 GTGTGCGTGTGCGTGTGC
* *
567171 GTG-GCGTGCGCGTGGTGT
1 GTGTGCGTGTGCGT-GTGC
* *
567189 GAAGTGCGCGTGCGTGAGTGC
1 G-TGTGCGTGTGCGT--GTGC
* *
567210 GCGTTGCTGTGTGCGTGTGA
1 GTG-TGC-GTGTGCGTGTGC
*
567230 GTGTGCG-GTGCGTGCGC
1 GTGTGCGTGTGCGTGTGC
* *
567247 GTGTGTGTGTGCGTGTGT
1 GTGTGCGTGTGCGTGTGC
*
567265 GTGTGCGTGTGCGT-TGT
1 GTGTGCGTGTGCGTGTGC
* *
567282 GTG-GCGTGCGCGTGCGC
1 GTGTGCGTGTGCGTGTGC
567299 GTGTGCGTGTGTGCGTGTG-
1 GTGTGC--GTGTGCGTGTGC
*
567318 TTGTGCGTGT--GTGTGC
1 GTGTGCGTGTGCGTGTGC
*
567334 GTGT--GTGTGCGTGTGT
1 GTGTGCGTGTGCGTGTGC
* * *
567350 GTTGTGCGTGTGTGCGTGT
1 G-TGTGCGTGTGCGTGTGC
567369 GTGTGCGTGT--GTGTGC
1 GTGTGCGTGTGCGTGTGC
567385 GTGT--GTGTGCGTGT--
1 GTGTGCGTGTGCGTGTGC
567399 GTGTGCGTGT--GTGTGC
1 GTGTGCGTGTGCGTGTGC
* * *
567415 GTGTGTGTGTGTGTGTGT
1 GTGTGCGTGTGCGTGTGC
567433 GTGTG
1 GTGTG
567438 AACTAGAATA
Statistics
Matches: 6535, Mismatches: 681, Indels: 857
0.81 0.08 0.11
Matches are distributed among these distances:
14 20 0.00
15 134 0.02
16 821 0.13
17 1244 0.19
18 3124 0.48
19 528 0.08
20 452 0.07
21 157 0.02
22 43 0.01
23 2 0.00
24 10 0.00
ACGTcount: A:0.01, C:0.15, G:0.49, T:0.35
Consensus pattern (18 bp):
GTGTGCGTGTGCGTGTGC
Found at i:560780 original size:9 final size:9
Alignment explanation
Indices: 560766--560809 Score: 72
Period size: 9 Copynumber: 5.0 Consensus size: 9
560756 TGCGTGAGTG
560766 TGTGTGTGT
1 TGTGTGTGT
560775 TGTGTGTG-
1 TGTGTGTGT
*
560783 TGTGTGTGG
1 TGTGTGTGT
560792 TGTGTGTGT
1 TGTGTGTGT
560801 TGTGTGTGT
1 TGTGTGTGT
560810 GCGCGTGTGC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
8 8 0.24
9 25 0.76
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (9 bp):
TGTGTGTGT
Found at i:572035 original size:29 final size:29
Alignment explanation
Indices: 571920--572028 Score: 200
Period size: 29 Copynumber: 3.8 Consensus size: 29
571910 CGCCATAGGA
*
571920 CGCCATGCAATCCAGGCGACATTGGAGGT
1 CGCCATGCAATCCAGGCGACCTTGGAGGT
571949 CGCCATGCAATCCAGGCGACCTTGGAGGT
1 CGCCATGCAATCCAGGCGACCTTGGAGGT
571978 CGCCATGCAATCCAGGCGACCTTGGAGGT
1 CGCCATGCAATCCAGGCGACCTTGGAGGT
*
572007 CGCCATGCAATCCGGGCGACCT
1 CGCCATGCAATCCAGGCGACCT
572029 CCAAGGTATA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
29 78 1.00
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (29 bp):
CGCCATGCAATCCAGGCGACCTTGGAGGT
Found at i:572668 original size:21 final size:21
Alignment explanation
Indices: 572642--572682 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
572632 CTAGTTAATC
572642 AGTTTGTTAGTATAAATTATT
1 AGTTTGTTAGTATAAATTATT
* *
572663 AGTTTGTTAGTTTAAGTTAT
1 AGTTTGTTAGTATAAATTAT
572683 ATTATATTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.17, T:0.54
Consensus pattern (21 bp):
AGTTTGTTAGTATAAATTATT
Found at i:572692 original size:28 final size:29
Alignment explanation
Indices: 572659--572720 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 29
572649 TAGTATAAAT
*
572659 TATTAGTTTGTTAGTTTAAG-T-TATATTA
1 TATTAGTTTATTAGTTT-AGTTATATATTA
572687 TATTAGTTTATTAGTTTAGTTATATATTA
1 TATTAGTTTATTAGTTTAGTTATATATTA
572716 TATTA
1 TATTA
572721 TATAAAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
27 2 0.06
28 17 0.55
29 12 0.39
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.58
Consensus pattern (29 bp):
TATTAGTTTATTAGTTTAGTTATATATTA
Done.