genome.fa.s8578.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008578.1 Hibiscus syriacus cultivar Beakdansim tig00111509_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88317

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12036--12104	23	3.0	23	84	0	102	30	26	26	17	1.97
15281--15335	16	3.5	16	73	11	60	61	7	0	30	1.23
15637--15696	30	2.0	31	86	3	86	38	8	16	36	1.79
15756--15822	31	2.2	31	84	7	84	52	8	7	31	1.61
27654--27693	21	1.9	21	94	0	71	47	12	5	35	1.63
35225--35323	46	2.1	48	83	10	125	39	5	14	41	1.67
49157--49201	2	22.5	2	100	0	90	0	48	0	51	1.00
50277--50356	30	2.7	30	98	0	151	41	11	6	41	1.66
53386--53481	35	2.7	35	88	3	140	41	29	0	29	1.56
53972--54261	144	2.0	147	89	5	455	47	8	6	37	1.59
54428--54507	35	2.3	35	91	4	126	32	0	22	45	1.53
55271--55339	33	2.1	33	89	5	104	15	8	31	43	1.78
55279--55349	33	2.2	33	89	2	108	11	7	36	45	1.67
55861--55910	17	2.9	17	82	5	64	28	28	8	36	1.85
55861--55913	18	3.0	18	86	8	65	28	28	7	35	1.84
58944--58971	5	5.6	5	100	0	56	78	0	0	21	0.75
59550--59601	20	2.6	20	96	0	95	38	26	13	21	1.90
59591--59689	21	4.8	20	72	6	72	36	23	19	21	1.95
59656--59849	20	9.6	20	81	5	221	35	25	19	19	1.95
59656--59849	60	3.2	60	83	0	253	35	25	19	19	1.95
60228--60296	33	2.2	32	89	5	104	11	21	18	47	1.80
60417--60471	14	3.6	14	73	21	56	40	23	27	9	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60417--60487	33	2.2	33	92	0	115	42	25	23	8	1.82
60483--60580	19	5.7	19	70	22	81	10	24	22	42	1.84
60505--60594	14	5.7	14	74	23	81	8	25	23	42	1.83
60488--60602	33	3.5	33	95	0	212	9	24	20	45	1.81
62297--62767	93	5.1	93	97	1	903	21	12	19	45	1.84
62297--62767	183	2.5	186	98	1	903	21	12	19	45	1.84
62811--62939	19	7.3	19	75	17	125	45	28	17	8	1.77
62847--62939	33	2.8	32	91	4	150	46	27	18	7	1.76
62811--62939	52	2.5	52	74	14	140	45	28	17	8	1.77
62935--63069	19	7.6	19	75	16	128	11	19	23	45	1.82
62957--63013	14	3.7	14	77	20	60	10	21	22	45	1.82
62940--63032	33	2.8	33	95	0	168	10	20	21	47	1.80
64968--65003	14	2.6	14	95	0	63	33	0	22	44	1.53
65109--65210	19	5.6	19	84	13	151	44	17	23	14	1.86
65217--65577	33	10.5	33	79	16	289	14	20	18	47	1.83
65239--65577	19	19.4	19	79	17	387	13	20	18	47	1.82
65217--65577	52	6.9	51	85	9	355	14	20	18	47	1.83
65239--65511	123	2.2	123	94	1	485	14	20	17	47	1.82
65207--65549	175	2.0	175	95	2	618	14	20	17	47	1.83
65234--65582	123	2.9	120	83	11	114	13	20	18	47	1.82
67878--67902	12	2.1	12	100	0	50	0	28	0	72	0.86
68077--68123	24	2.0	24	87	8	69	38	21	14	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68797--69165	20	18.5	20	86	4	458	20	18	26	34	1.96
70043--70207	83	2.0	80	86	8	226	38	11	14	35	1.82
71270--71320	25	2.0	26	88	11	79	62	7	5	23	1.44
78117--78203	32	2.8	32	87	1	122	32	17	16	34	1.92
80504--80556	18	2.9	18	81	10	72	37	20	32	9	1.85
80544--80597	23	2.3	24	78	12	58	55	16	16	11	1.68
82494--82528	17	2.1	17	89	5	54	40	0	17	42	1.49

Tables:   1

The End!