genome.fa.s8580.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008580.1 Hibiscus syriacus cultivar Beakdansim tig00111514_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149825

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11002--11082	23	3.8	21	80	7	92	25	29	22	22	1.99
17041--17165	57	2.3	53	80	9	135	59	9	12	19	1.60
18910--18948	3	13.0	3	84	10	53	61	2	0	35	1.10
19210--19250	17	2.4	17	84	8	57	51	26	2	19	1.59
19267--19417	81	1.9	81	91	0	248	25	7	18	49	1.73
20254--20306	16	3.2	16	72	17	54	18	5	28	47	1.72
21175--21224	19	2.5	21	80	9	68	20	6	8	66	1.40
21241--21282	21	2.0	21	86	4	59	54	0	2	42	1.13
40706--40758	20	2.7	20	96	0	97	35	18	18	26	1.95
41264--41308	23	2.0	22	86	4	63	40	0	22	37	1.54
41292--41329	14	2.7	14	80	11	51	31	0	28	39	1.57
41467--41506	21	1.9	21	94	0	71	22	17	30	30	1.97
45347--45374	13	2.2	13	100	0	56	39	17	28	14	1.89
49142--49192	20	2.5	20	80	0	57	43	17	13	25	1.86
54178--54214	19	1.9	19	100	0	74	32	8	21	37	1.83
68602--68818	48	4.6	48	86	2	253	48	22	16	12	1.80
68624--68818	96	2.0	96	88	0	291	47	23	15	12	1.80
73495--73684	94	2.0	95	92	1	319	37	17	9	35	1.82
73593--73749	68	2.3	68	95	1	280	40	16	6	36	1.74
73481--73790	162	1.9	163	93	0	532	38	16	8	37	1.79
73522--73708	94	2.0	94	84	4	245	40	16	7	35	1.77
73704--73876	81	2.2	80	93	1	292	38	15	6	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73542--74039	249	2.0	242	85	4	658	39	15	6	37	1.74
73784--74253	160	2.9	161	81	6	522	40	15	7	37	1.74
74070--74429	94	3.8	94	87	3	501	37	16	9	36	1.80
74619--74652	12	2.8	12	90	0	50	50	17	11	20	1.77
75551--75613	31	2.0	31	93	0	108	34	17	19	28	1.94
76227--76280	24	2.2	24	96	0	99	24	31	12	31	1.93
77697--77736	3	14.3	3	89	10	59	27	0	0	72	0.85
77700--77736	19	1.9	19	100	0	74	27	0	0	72	0.84
77697--77734	16	2.3	17	95	4	69	26	0	0	73	0.83
77851--77899	25	2.0	25	100	0	98	38	20	16	24	1.92
81527--81588	32	2.0	32	96	3	117	14	14	9	61	1.57
84649--84757	22	4.7	22	71	17	87	70	11	14	3	1.29
84650--84766	12	10.2	11	69	21	62	70	10	15	3	1.27
84674--84718	21	2.2	22	88	11	69	68	8	20	2	1.27
86301--86408	38	2.9	35	82	8	117	33	19	12	34	1.90
86331--86497	90	1.8	93	87	6	252	31	17	10	40	1.84
86609--86702	34	2.7	35	80	5	109	29	19	13	37	1.90
86905--86950	24	2.0	23	82	4	56	28	13	4	54	1.57
87405--87479	35	2.1	36	85	7	100	36	18	10	34	1.86
87752--87805	28	1.9	28	85	7	74	22	16	16	44	1.86
87869--88843	40	22.7	43	70	11	536	25	31	19	23	1.98
87817--88843	129	8.0	129	99	0	1973	25	31	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89042--89075	3	11.3	3	87	12	52	29	0	0	70	0.87
89042--89087	16	3.0	15	84	12	58	30	0	2	67	1.03
89189--89237	25	2.0	25	100	0	98	38	20	16	24	1.92
93020--93075	26	2.1	27	86	3	78	35	14	5	44	1.68
93218--93344	66	1.9	66	85	3	175	40	13	7	37	1.74
93233--93377	66	2.2	66	82	4	177	42	11	7	38	1.70
93284--93495	94	2.3	94	90	0	327	39	14	8	37	1.77
93011--93413	159	2.5	159	86	4	511	38	13	7	39	1.74
93011--93471	160	2.8	161	82	6	536	38	13	7	40	1.74
93448--93505	26	2.2	27	81	12	75	37	15	13	32	1.87
93511--93585	29	2.6	29	95	2	132	33	6	14	45	1.71
102213--102238	13	2.0	13	100	0	52	23	15	23	38	1.92
106402--106468	26	2.6	26	83	6	84	41	0	0	58	0.98
106408--106491	13	6.8	13	72	11	54	38	0	0	61	0.96
106562--106641	13	5.5	15	73	18	64	35	1	0	63	1.02
106561--106640	3	26.7	3	72	25	55	35	1	0	63	1.02
106367--106813	150	2.8	150	87	8	574	39	2	0	57	1.15
106703--106749	16	3.3	14	86	13	69	34	0	0	65	0.93
107011--107059	24	2.0	24	100	0	98	24	4	24	46	1.69
108849--108883	2	18.0	2	88	5	54	51	2	0	45	1.16
109835--109900	17	3.8	17	83	2	78	36	28	4	30	1.77
110188--110595	203	2.0	203	99	0	798	45	6	5	42	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110709--110746	20	1.9	20	88	0	58	21	26	10	42	1.85
110391--112032	656	2.5	652	91	2	2563	37	13	9	39	1.77
111791--111865	37	2.0	37	87	5	107	48	0	2	49	1.15
112007--112041	16	2.2	16	89	0	52	42	14	0	42	1.45
112046--112095	18	2.6	20	87	6	68	32	16	2	50	1.56
112083--112111	15	1.9	15	100	0	58	37	0	0	62	0.96
113557--113589	15	2.1	16	94	5	59	0	3	48	48	1.17
115576--115617	10	4.2	10	82	11	50	30	26	0	42	1.55
117790--117910	51	2.5	50	79	12	135	29	23	20	25	1.99
117922--118040	51	2.4	50	88	1	175	17	29	35	17	1.93
121241--121463	47	4.9	47	90	2	307	24	3	5	66	1.28
121241--121463	95	2.4	92	84	8	278	24	3	5	66	1.28
121311--121435	24	5.3	23	68	15	76	26	4	4	64	1.31
121385--121467	16	5.1	15	69	17	51	20	3	6	69	1.25
123564--123607	5	8.8	5	92	0	61	4	40	36	18	1.71
132768--132808	21	1.9	22	85	5	57	48	0	0	51	1.00
133806--133844	17	2.2	17	86	9	51	2	20	12	64	1.40
134039--134078	16	2.6	16	96	4	73	17	17	57	7	1.62
134050--134090	16	2.7	15	88	3	55	19	17	51	12	1.76
134207--134296	3	30.0	3	83	0	117	58	0	0	41	0.98
134209--134296	21	4.2	21	91	0	131	59	0	0	40	0.98
134549--134657	42	2.7	40	89	2	164	20	20	11	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134695--135149	113	4.0	113	90	2	702	28	19	14	38	1.90
135839--136548	83	8.6	83	95	0	1262	37	22	13	26	1.91
137698--137772	12	6.2	12	81	15	84	0	17	0	82	0.67
137705--137766	8	7.5	8	77	12	54	0	16	0	83	0.64
137698--137769	16	4.3	16	83	15	76	0	16	0	83	0.65

Tables:   1

The End!