Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008581.1 Hibiscus syriacus cultivar Beakdansim tig00111515_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59527

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
907--958
4
12.8
4
75
4
50
23
0
5
71
1.07
973--1096
23
5.3
23
69
13
83
26
4
4
64
1.31
991--1119
24
5.5
24
67
18
67
21
4
5
68
1.29
905--1123
47
4.9
47
87
5
271
23
3
5
67
1.28
3155--3197
5
8.8
5
87
5
52
4
41
34
18
1.71
3195--3219
6
4.2
6
100
0
50
0
16
48
36
1.46
12167--12206
20
2.0
21
85
5
55
47
0
0
52
1.00
13187--13225
17
2.2
17
86
9
51
2
20
12
64
1.40
13420--13459
16
2.6
16
96
4
73
17
17
57
7
1.62
13431--13471
16
2.7
15
88
3
55
19
17
51
12
1.76
13588--13671
3
29.0
3
78
7
84
57
0
0
42
0.99
13590--13665
32
2.4
32
84
8
93
56
0
0
43
0.99
13919--14026
41
2.7
40
89
5
164
20
20
11
48
1.80
14064--14494
112
3.9
112
89
5
669
27
19
14
38
1.90
14076--14521
225
2.0
221
92
2
732
27
19
14
38
1.91
15200--15909
83
8.6
83
95
0
1262
37
22
13
26
1.91
17065--17135
16
4.4
16
74
22
60
1
18
0
80
0.79
17061--17141
21
3.6
21
76
20
76
1
17
0
81
0.76
17059--17141
27
3.1
26
83
11
98
1
18
0
80
0.77
17060--17142
15
5.5
15
78
17
84
1
18
0
80
0.77
29447--29485
17
2.2
17
86
9
51
2
20
12
64
1.40
29682--29718
16
2.4
16
95
4
67
16
18
56
8
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29835--29912
3
26.0
3
89
0
120
61
0
0
38
0.96
29834--29923
18
5.4
17
84
7
89
61
0
0
38
0.96
48448--48489
21
2.0
22
90
4
68
38
9
0
52
1.34
51243--51284
21
2.0
21
85
0
57
47
16
26
9
1.77
57402--57614
108
2.0
109
92
2
358
36
7
11
44
1.69

Tables:   1

The End!