genome.fa.s8582.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008582.1 Hibiscus syriacus cultivar Beakdansim tig00111516_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105326

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3778--4020	54	4.6	54	86	3	348	30	22	19	27	1.98
4338--4430	42	2.2	42	98	1	179	29	23	15	32	1.95
4363--4435	21	3.5	21	71	5	76	28	27	13	30	1.94
4420--4598	95	1.9	94	90	3	288	26	26	17	29	1.97
6157--6186	15	1.9	16	93	6	53	10	3	6	80	1.01
8129--8175	23	2.1	21	84	11	58	40	14	4	40	1.66
9981--10029	26	2.0	26	84	11	68	42	6	8	42	1.59
10198--10237	3	13.3	3	89	0	53	67	7	0	25	1.16
12929--12964	18	2.0	18	100	0	72	27	5	22	44	1.75
14245--14311	31	2.2	31	91	0	107	32	17	22	26	1.96
24133--24311	89	2.0	89	98	0	349	25	37	13	23	1.91
29980--30089	55	2.0	55	100	0	220	20	29	7	43	1.78
33831--33870	21	1.9	21	85	10	55	15	10	37	37	1.80
33979--34046	20	3.3	21	81	4	86	30	23	26	19	1.98
34068--34165	21	4.7	21	77	13	103	22	18	34	24	1.96
34245--34302	30	2.0	29	90	10	91	44	17	5	32	1.70
34245--34304	29	2.0	30	93	6	104	43	16	6	33	1.74
36892--36974	41	2.0	41	83	4	105	27	25	24	22	2.00
36901--36974	20	3.7	20	80	3	85	29	22	24	22	1.99
37152--37209	30	2.0	29	90	10	91	44	17	5	32	1.70
37152--37211	29	2.0	30	93	6	104	43	16	6	33	1.74
38201--38407	75	2.7	76	86	3	274	21	22	31	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40994--41031	20	1.9	20	88	0	58	10	26	36	26	1.89
41013--41074	20	2.9	21	83	7	72	16	25	33	24	1.95
46827--47032	75	2.7	75	87	2	270	21	22	31	24	1.98
47583--47873	107	2.7	109	88	3	426	24	18	15	41	1.90
48160--48197	15	2.4	16	82	4	51	15	15	5	63	1.48
48130--48197	31	2.2	31	84	5	84	19	16	4	60	1.52
48158--48242	15	5.7	15	67	15	50	20	17	4	57	1.57
49593--49663	32	2.2	32	92	5	117	42	33	9	14	1.78
56464--56736	139	2.0	139	84	2	361	34	26	15	23	1.95
56798--57092	122	2.4	122	84	4	398	33	22	14	30	1.93
56798--57129	122	2.7	121	81	7	395	34	21	14	29	1.93
58062--58123	29	2.1	29	81	0	70	29	14	6	50	1.68
58142--58170	4	7.2	4	100	0	58	24	0	0	75	0.80
58145--58402	122	2.1	122	80	9	292	22	13	12	50	1.76
58266--58479	108	1.9	112	86	7	305	25	14	14	45	1.83
58500--58596	35	2.9	32	79	8	104	27	13	4	54	1.57
58781--58818	15	2.4	16	82	4	51	15	15	5	63	1.48
59657--59702	21	2.2	21	88	0	65	30	28	26	15	1.96
59729--59773	22	2.0	22	86	4	63	31	33	26	8	1.87
61078--61205	31	4.1	31	78	9	134	27	17	20	34	1.95
61191--61255	30	2.2	30	91	0	103	26	21	21	30	1.98
61202--61263	30	2.1	30	100	0	124	24	19	24	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70952--70994	20	2.2	20	86	0	59	53	0	0	46	1.00
72389--72517	64	2.0	65	86	1	179	52	16	6	24	1.68
73847--73888	21	2.0	21	100	0	84	42	14	14	28	1.84
76937--76989	22	2.4	22	96	0	97	35	7	16	39	1.78
79952--80086	53	2.6	52	84	3	175	22	8	17	51	1.71
84341--84376	15	2.5	14	90	4	54	38	11	2	47	1.54
85319--85420	29	3.5	29	84	6	134	39	8	11	40	1.73
85714--85755	17	2.4	18	85	14	54	47	0	0	52	1.00
85799--85864	34	1.9	35	81	9	82	40	1	3	54	1.25
85803--85860	23	2.5	24	75	10	59	37	1	3	56	1.26
85856--85931	31	2.5	29	74	14	73	47	1	2	48	1.24
85990--86059	23	3.0	23	83	8	81	50	0	0	50	1.00
86077--86115	11	3.5	11	100	0	78	38	0	0	61	0.96
86367--86451	31	2.8	28	72	16	71	38	12	7	41	1.71
89753--89819	22	3.0	22	100	0	134	26	26	26	19	1.99
90112--90183	29	2.5	29	88	0	99	37	13	11	37	1.81
90485--90634	67	2.3	66	87	3	203	19	27	26	26	1.99
90486--90656	67	2.6	66	84	6	186	19	27	25	27	1.99
96684--96749	22	3.0	22	95	4	125	27	25	27	19	1.99
97039--97110	29	2.5	29	88	0	99	37	13	11	37	1.81
97410--97558	66	2.3	65	85	4	192	19	26	26	26	1.99
102208--102314	53	2.0	54	92	1	180	32	11	17	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104724--104775	21	2.5	21	81	3	61	38	19	25	17	1.93
104768--104812	16	2.6	17	86	10	56	35	22	17	24	1.95

Tables:   1

The End!