genome.fa.s8583.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008583.1 Hibiscus syriacus cultivar Beakdansim tig00111517_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73233

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180--328	66	2.3	66	87	4	203	19	26	26	26	1.99
181--350	66	2.6	66	83	8	177	19	27	25	27	1.99
6359--6425	22	3.0	22	100	0	134	26	26	26	19	1.99
6718--6789	29	2.5	29	88	0	99	37	13	11	37	1.81
7092--7240	66	2.3	66	88	2	210	19	27	26	26	1.99
11982--12089	54	2.0	54	94	0	189	33	11	17	37	1.85
14566--14617	21	2.5	21	81	3	61	38	19	25	17	1.93
14606--14720	20	5.7	19	76	11	95	36	23	16	23	1.94
14626--14720	41	2.3	41	83	0	127	37	23	15	23	1.93
14888--14931	22	2.0	22	90	0	70	18	45	13	22	1.84
15194--15242	20	2.5	20	89	0	71	18	18	26	36	1.94
15389--15443	25	2.2	24	78	15	58	20	9	18	52	1.71
16572--16616	18	2.5	18	88	0	72	26	44	15	13	1.83
17098--17143	20	2.3	20	84	0	56	36	23	21	17	1.94
17109--17153	20	2.3	20	84	3	65	40	20	24	15	1.91
17137--17228	19	5.4	19	65	24	69	47	21	18	11	1.80
17153--17211	14	3.9	14	76	20	64	47	23	16	11	1.80
17137--17228	33	2.8	33	93	0	157	47	21	18	11	1.80
17271--17326	20	2.8	19	86	7	76	16	25	23	35	1.94
17689--17718	15	2.0	15	100	0	60	26	33	20	20	1.97
17712--17781	21	3.3	21	71	11	63	22	41	15	20	1.90
17705--17793	42	2.1	43	85	4	128	21	42	14	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19352--19411	19	3.4	19	76	21	76	50	18	18	13	1.78
19339--19442	33	3.2	33	87	2	147	45	21	22	11	1.83
19371--19427	14	3.7	14	77	20	60	45	21	22	10	1.82
19442--19535	33	2.8	33	95	0	170	11	24	20	43	1.85
19439--19535	19	5.6	18	64	22	57	11	24	20	43	1.85
19754--19804	20	2.5	20	93	0	93	21	29	19	29	1.98
20556--20602	24	2.0	24	91	0	76	23	17	21	38	1.93
20777--20801	12	2.1	12	100	0	50	72	0	28	0	0.86
23024--23148	19	7.4	19	66	24	100	44	19	21	15	1.87
23024--23150	33	3.8	33	88	4	202	43	19	22	14	1.88
23025--23157	66	2.0	66	95	0	239	42	19	21	16	1.89
23179--23244	19	3.5	19	100	0	132	16	21	16	45	1.85
23159--23244	38	2.4	34	83	12	111	15	22	17	45	1.85
23352--23385	14	2.4	15	90	9	54	44	20	0	35	1.52
24744--24832	42	2.1	42	81	8	101	20	20	34	24	1.96
25081--25271	94	2.0	94	95	0	346	47	19	12	20	1.82
26964--27095	19	7.1	19	76	11	130	44	19	22	12	1.85
27091--27157	19	3.5	19	81	2	80	11	16	23	47	1.80
27677--27768	20	4.6	20	87	2	130	20	22	18	38	1.94
27677--27768	41	2.3	40	90	1	139	20	22	18	38	1.94
27765--27823	20	2.9	21	92	2	77	40	22	20	16	1.91
27776--27823	20	2.4	20	100	0	96	41	25	18	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27672--27803	61	2.2	62	76	4	142	28	21	18	32	1.96
27818--27869	20	2.6	20	90	0	77	28	17	23	30	1.97
27859--27913	20	2.7	21	80	5	67	20	23	18	38	1.93
27941--27981	21	2.0	21	85	0	55	34	29	17	19	1.94
28493--28537	23	1.9	24	86	13	67	35	0	11	53	1.37
29502--29675	69	2.5	69	94	1	296	43	15	12	28	1.83
29729--29822	40	2.3	40	90	0	152	38	8	17	36	1.80
38396--38436	18	2.3	18	95	0	73	26	12	29	31	1.92
43060--44583	380	4.0	380	99	0	2985	30	21	21	26	1.98
44957--45042	32	2.7	32	82	8	111	45	37	6	10	1.66
49279--49332	25	2.1	26	83	10	67	59	0	3	37	1.15
56628--56684	19	2.7	22	76	15	66	31	7	28	33	1.84
56640--56718	19	3.8	21	74	18	58	34	6	29	30	1.82
56683--56719	19	1.9	19	94	0	65	40	5	27	27	1.78
57120--57216	19	4.8	21	72	8	85	32	21	22	22	1.98
57120--57216	40	2.4	40	92	0	167	32	21	22	22	1.98
57505--57545	18	2.3	18	91	4	66	36	0	7	56	1.27
57505--57547	16	2.5	17	88	7	61	39	0	6	53	1.28
57505--57558	18	3.0	18	86	5	56	40	1	9	48	1.46
57876--57923	20	2.3	21	86	13	64	68	4	0	27	1.07
58103--58132	14	2.1	14	93	0	51	63	0	0	36	0.95
58634--58668	12	2.9	12	91	0	52	31	25	5	37	1.80

Tables:   1

The End!