genome.fa.s8584.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008584.1 Hibiscus syriacus cultivar Beakdansim tig00111519_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118284

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354--391	20	1.9	20	88	0	58	21	10	10	57	1.61
354--392	10	3.9	10	82	0	51	20	10	10	58	1.59
406--449	22	2.0	22	82	8	54	9	11	18	61	1.55
5492--5533	2	21.0	2	95	0	75	52	0	47	0	1.00
12279--12403	31	4.0	31	89	2	180	20	16	22	40	1.91
17131--17255	31	4.0	31	94	2	207	20	19	22	38	1.94
19509--19546	20	1.9	20	100	0	76	23	21	21	34	1.97
19509--19566	20	2.7	20	86	10	71	25	20	20	32	1.97
19555--19676	64	1.9	65	86	6	176	26	22	16	34	1.95
23101--23161	23	2.7	23	86	0	95	31	26	24	18	1.97
27976--28052	38	2.0	38	97	0	145	28	23	19	28	1.98
28265--28307	18	2.4	18	84	7	61	32	2	0	65	1.06
32998--33445	229	2.0	226	93	2	772	45	7	7	39	1.61
33676--33722	20	2.4	19	89	10	76	55	10	17	17	1.69
33680--33727	20	2.6	18	84	15	62	56	10	14	18	1.66
35946--36010	21	3.1	21	80	6	69	40	15	29	15	1.88
36044--36109	33	2.0	33	90	0	105	28	0	48	22	1.51
37894--37942	19	2.6	19	93	0	80	30	2	10	57	1.43
38061--39423	197	6.9	199	97	1	2602	36	16	15	30	1.90
38061--39423	395	3.4	397	97	1	2607	36	16	15	30	1.90
40893--40967	3	25.0	3	76	0	69	33	6	34	25	1.82
42159--42669	183	2.8	182	94	1	882	36	13	16	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45802--45863	21	2.8	23	85	7	83	35	6	20	37	1.79
45826--45877	21	2.5	21	87	6	70	34	1	21	42	1.64
45876--45912	19	1.9	19	88	0	56	27	16	10	45	1.80
46220--46283	23	2.8	23	87	0	92	35	6	20	37	1.78
46220--46292	23	3.2	23	82	7	85	34	5	20	39	1.76
45706--46526	427	1.9	416	95	3	1475	39	8	13	38	1.74
46558--46608	25	2.0	25	92	0	84	33	7	19	39	1.81
46857--46893	18	2.1	18	89	0	56	32	5	10	51	1.60
46849--46895	24	2.0	24	86	0	67	34	4	14	46	1.64
47151--47274	38	3.2	38	95	2	221	47	20	13	17	1.82
47675--47738	23	2.8	23	87	0	92	35	6	20	37	1.78
47675--47747	23	3.2	23	82	7	85	34	5	20	39	1.76
68210--68267	28	2.1	27	81	6	71	37	5	18	37	1.74
70060--70176	58	2.0	58	93	0	198	33	10	15	41	1.81
71029--71085	20	2.8	21	84	7	73	68	8	15	7	1.37
73452--73491	21	2.0	20	95	5	71	60	0	2	37	1.11
74842--74877	16	2.2	16	95	0	63	11	19	25	44	1.83
75745--75786	21	2.0	22	85	4	59	14	11	0	73	1.09
77394--77474	42	2.0	41	85	2	108	24	13	20	40	1.89
77474--77679	44	4.7	44	85	0	261	32	15	20	31	1.94
83721--83877	64	2.5	64	75	14	153	34	19	19	27	1.95
84261--84361	29	3.5	29	93	1	177	44	15	19	19	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91204--91304	29	3.5	29	93	1	177	44	17	18	18	1.87
92668--92702	18	1.9	18	94	0	61	45	11	0	42	1.40
92854--92924	24	2.8	25	87	8	90	33	23	2	39	1.70
92873--92926	28	2.0	28	96	3	101	35	22	3	38	1.72
96271--96319	22	2.2	22	88	0	71	34	12	12	40	1.80
97388--97819	155	2.8	154	81	6	457	29	17	6	47	1.71
98040--98071	2	16.5	2	93	6	57	53	0	0	46	1.00
113233--113262	13	2.2	13	94	5	51	53	3	0	43	1.17
114449--114531	40	2.0	40	90	2	130	36	10	4	48	1.60
117025--117070	24	2.0	23	91	4	74	15	10	26	47	1.78

Tables:   1

The End!