genome.fa.s8585.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008585.1 Hibiscus syriacus cultivar Beakdansim tig00111521_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188024

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2187--2245	29	2.0	29	100	0	118	23	13	13	49	1.78
3136--3320	88	2.1	86	95	2	334	28	14	13	43	1.83
3185--3435	88	2.9	84	80	6	236	30	14	11	43	1.82
4885--4957	31	2.4	31	92	0	128	34	17	16	31	1.93
8434--8471	12	3.0	13	88	3	51	71	0	2	26	1.00
10519--10577	3	19.7	3	100	0	118	66	0	0	33	0.92
10786--11639	129	6.6	129	95	0	1460	24	19	29	25	1.98
11652--11748	28	3.4	28	80	15	83	46	12	15	25	1.81
11672--11748	28	2.6	28	82	17	95	46	11	15	25	1.80
11750--11939	66	2.9	64	73	7	159	37	14	18	28	1.91
12131--12496	129	2.8	130	72	8	336	41	12	16	28	1.86
12388--12609	118	1.9	119	80	6	263	42	13	13	29	1.83
12721--13167	67	6.7	67	92	4	712	43	12	11	31	1.79
13142--13216	30	2.5	28	78	17	80	42	16	5	36	1.70
13239--13302	25	2.4	25	82	7	65	45	17	6	31	1.73
13069--13364	122	2.4	121	92	2	470	44	15	10	29	1.80
13596--13657	21	3.1	21	62	17	51	35	12	20	30	1.91
13590--13698	38	2.9	36	82	6	119	34	12	19	33	1.90
21215--21240	3	8.7	3	100	0	52	65	0	0	34	0.93
21510--21556	19	2.6	18	86	6	67	34	10	19	36	1.86
22082--22202	29	4.1	29	84	4	136	25	11	12	50	1.73
24830--24915	31	2.8	31	94	0	154	51	17	8	23	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26905--26961	12	4.7	12	79	18	55	15	77	1	5	1.03
28390--28479	46	2.0	46	82	4	110	44	5	14	35	1.69
38556--38581	5	5.2	5	100	0	52	0	57	0	42	0.98
44884--44942	3	20.0	3	85	3	84	32	3	1	62	1.21
52859--52904	4	12.2	4	82	13	62	54	21	0	23	1.45
52867--52902	18	2.1	17	94	5	63	55	22	0	22	1.44
53565--53719	29	5.5	29	90	3	228	29	9	13	47	1.75
53784--54175	131	3.0	130	97	1	732	33	11	10	44	1.76
54352--54395	15	2.9	15	93	0	70	31	20	4	43	1.72
54810--55257	129	3.5	129	96	1	819	24	31	18	25	1.98
54825--55288	257	1.8	258	92	3	801	24	31	18	25	1.97
55454--55509	3	19.0	3	88	3	87	32	1	1	64	1.14
62630--62703	29	2.6	29	80	18	91	47	4	1	47	1.29
64168--64227	27	2.2	27	82	5	68	48	11	13	26	1.76
64747--64816	31	2.3	30	85	5	86	47	8	4	40	1.54
64757--64824	31	2.2	31	82	10	77	45	10	5	38	1.63
70204--70314	30	3.7	31	75	16	108	44	13	4	37	1.64
74365--74433	2	34.0	2	76	13	52	40	4	4	50	1.42
75522--75770	134	1.9	134	84	4	340	31	17	22	28	1.96
84701--84734	16	2.1	17	94	5	61	35	26	5	32	1.81
92896--92976	21	3.8	22	79	9	78	16	24	34	24	1.95
92897--92978	20	3.9	21	78	10	69	15	25	32	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95281--95464	30	6.1	30	98	0	359	29	23	23	23	1.99
95453--95517	31	2.1	30	83	8	78	30	18	20	30	1.96
95760--95860	20	5.3	20	70	21	92	16	21	2	58	1.52
95747--95871	37	3.4	37	98	0	241	17	20	2	59	1.49
95749--95869	13	9.8	12	68	21	56	17	21	2	58	1.50
95771--95873	13	8.2	13	71	21	69	18	20	1	59	1.48
96439--96476	20	1.9	20	88	0	58	10	31	34	23	1.89
103692--103774	30	2.7	31	72	10	82	43	12	4	39	1.63
107610--107640	16	1.9	16	93	0	53	25	25	29	19	1.99
107589--107639	21	2.4	20	83	9	57	25	23	27	23	2.00
109813--109856	24	1.9	24	86	9	65	70	9	4	15	1.30
113329--113379	2	25.5	2	100	0	102	49	0	0	50	1.00
124244--124294	20	2.5	20	96	0	93	11	13	0	74	1.07
126254--126299	23	2.0	23	82	0	56	34	8	21	34	1.84
134087--134236	31	4.8	31	84	0	192	42	14	8	35	1.75
139417--139467	23	2.3	23	86	6	79	19	21	41	17	1.91
139395--139473	21	3.7	22	78	8	74	17	21	37	22	1.94
139418--139478	20	2.9	20	85	7	59	18	24	34	22	1.96
142476--142500	2	12.5	2	100	0	50	48	0	0	52	1.00
145327--145386	6	9.8	6	86	13	79	0	80	0	20	0.72
146710--146752	20	2.3	19	88	11	70	23	30	9	37	1.86
146715--146752	20	1.9	20	100	0	76	23	28	10	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146913--147812	6	156.7	6	92	7	1504	66	0	0	33	0.92
160994--161027	12	2.8	12	86	0	50	23	47	23	5	1.73
161232--161264	2	16.5	2	100	0	66	51	0	0	48	1.00
161572--161618	24	1.9	25	91	4	78	36	0	2	61	1.08
161605--161635	15	2.0	16	93	6	55	54	0	0	45	0.99
161621--161704	32	2.6	33	80	14	104	38	5	1	54	1.32
161789--161873	28	2.9	29	80	5	100	55	0	1	43	1.07
164287--164314	5	5.6	5	100	0	56	0	60	0	39	0.97
164831--164869	19	2.0	20	85	5	53	20	17	7	53	1.68
167449--167498	22	2.2	23	89	3	75	56	16	16	12	1.68
179948--180029	41	2.0	41	95	0	146	24	14	18	42	1.87
181875--182015	71	2.0	71	84	0	183	31	15	18	34	1.92
183746--183780	18	1.9	18	88	0	52	45	2	0	51	1.16

Tables:   1

The End!