Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008586.1 Hibiscus syriacus cultivar Beakdansim tig00111522_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 346163
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
File 1 of 2
Found at i:10597 original size:49 final size:49
Alignment explanation
Indices: 10525--10622 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
10515 TTTAGTCTTT
10525 ATACTATTGGTTTTGAATTTCATACAGGTAACAACGTGGATCAGTTGTC
1 ATACTATTGGTTTTGAATTTCATACAGGTAACAACGTGGATCAGTTGTC
* *
10574 ATACTCTTGGTTTTGAATTTCATACAGGTAACAACGTGGATCATTTGTC
1 ATACTATTGGTTTTGAATTTCATACAGGTAACAACGTGGATCAGTTGTC
10623 TATGTATTTG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (49 bp):
ATACTATTGGTTTTGAATTTCATACAGGTAACAACGTGGATCAGTTGTC
Found at i:12737 original size:16 final size:17
Alignment explanation
Indices: 12712--12755 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
12702 GTATAGTTTT
*
12712 ATTAATTTATTT-TAAA
1 ATTAAATTATTTATAAA
12728 ATTAAATTATTTATAAA
1 ATTAAATTATTTATAAA
*
12745 TTATAAATTAT
1 AT-TAAATTAT
12756 AAAATATCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 11 0.46
17 5 0.21
18 8 0.33
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
ATTAAATTATTTATAAA
Found at i:13165 original size:21 final size:20
Alignment explanation
Indices: 13123--13171 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
13113 ATAATATTAT
13123 TTAAATT-ATAAATTTAAAA
1 TTAAATTAATAAATTTAAAA
* *
13142 TTATATTAATAAATTCTTAAA
1 TTAAATTAATAAATT-TAAAA
13163 TTAAATTAA
1 TTAAATTAA
13172 ATTTAAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 6 0.24
20 7 0.28
21 12 0.48
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAAATTAATAAATTTAAAA
Found at i:13802 original size:26 final size:26
Alignment explanation
Indices: 13771--13821 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13761 ATTAATTTAA
13771 ATTATCATTGTTTCATTTGGATAATG
1 ATTATCATTGTTTCATTTGGATAATG
*
13797 ATTATCATTGTTTGATTTGGATAAT
1 ATTATCATTGTTTCATTTGGATAAT
13822 TTATTCTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.06, G:0.16, T:0.51
Consensus pattern (26 bp):
ATTATCATTGTTTCATTTGGATAATG
Found at i:13886 original size:26 final size:26
Alignment explanation
Indices: 13856--13910 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
13846 TTCAAACTCG
* *
13856 GATTATTAATGTTTGATTTGGATAAT
1 GATTATCAATGTTTGATTTGAATAAT
* *
13882 GATTATCATTGTTTGATTTGAATTAT
1 GATTATCAATGTTTGATTTGAATAAT
13908 GAT
1 GAT
13911 GTGAATTGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.02, G:0.18, T:0.51
Consensus pattern (26 bp):
GATTATCAATGTTTGATTTGAATAAT
Found at i:20246 original size:13 final size:13
Alignment explanation
Indices: 20228--20252 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20218 TAATATTAAT
20228 ATTTAAATTATAG
1 ATTTAAATTATAG
20241 ATTTAAATTATA
1 ATTTAAATTATA
20253 TTAATATGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (13 bp):
ATTTAAATTATAG
Found at i:22741 original size:21 final size:23
Alignment explanation
Indices: 22707--22750 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
22697 ATTTCCAATC
*
22707 ATATTCTATAAAATTATATTAAT
1 ATATTCTATAAAATTAAATTAAT
22730 ATATTCT-T-AAATTAAATTAAT
1 ATATTCTATAAAATTAAATTAAT
22751 TTAGATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 1 0.05
23 7 0.35
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (23 bp):
ATATTCTATAAAATTAAATTAAT
Found at i:24679 original size:16 final size:17
Alignment explanation
Indices: 24658--24702 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
24648 GGTATAGTTT
*
24658 AATTAATTTATTT-TAA
1 AATTAAATTATTTATAA
24674 AATTAAATTATTTATAA
1 AATTAAATTATTTATAA
*
24691 ATTATAAATTAT
1 AAT-TAAATTAT
24703 AAATATCATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 12 0.48
17 5 0.20
18 8 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AATTAAATTATTTATAA
Found at i:24704 original size:14 final size:17
Alignment explanation
Indices: 24685--24720 Score: 51
Period size: 14 Copynumber: 2.3 Consensus size: 17
24675 ATTAAATTAT
24685 TTATAAAT-T-ATAA-A
1 TTATAAATATCATAAGA
24699 TTATAAATATCATAAGA
1 TTATAAATATCATAAGA
24716 TTATA
1 TTATA
24721 TTAATTGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 8 0.42
15 1 0.05
16 4 0.21
17 6 0.32
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (17 bp):
TTATAAATATCATAAGA
Found at i:24855 original size:83 final size:86
Alignment explanation
Indices: 24708--24893 Score: 310
Period size: 84 Copynumber: 2.2 Consensus size: 86
24698 ATTATAAATA
24708 TCATAAGATTATATTAATTGAAATTATGTTAATATTCTTAAATGAAAATTTTCTAATATTATTT-
1 TCATAAGATTATATTAATTGAAATTATGTTAATATTCTTAAATGAAAATTTTCTAATATTATTTA
24772 AAATA-TTTTATATAATTTAT
66 AAATATTTTTATATAATTTAT
* * *
24792 TCATAAGATTATATTAATTGAAATTTTGTTAATA-TCTTAAATTAAATTTTTCTAATATTATTTA
1 TCATAAGATTATATTAATTGAAATTATGTTAATATTCTTAAATGAAAATTTTCTAATATTATTTA
24856 AAATATTTTTATATAATTTAT
66 AAATATTTTTATATAATTTAT
24877 TCATAA-ATTA-ATTAATT
1 TCATAAGATTATATTAATT
24894 ATATATTATG
Statistics
Matches: 97, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
83 34 0.35
84 42 0.43
85 21 0.22
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (86 bp):
TCATAAGATTATATTAATTGAAATTATGTTAATATTCTTAAATGAAAATTTTCTAATATTATTTA
AAATATTTTTATATAATTTAT
Found at i:25156 original size:14 final size:13
Alignment explanation
Indices: 25133--25193 Score: 51
Period size: 13 Copynumber: 4.8 Consensus size: 13
25123 TAATAATATT
25133 ATTTAAATTATAA
1 ATTTAAATTATAA
25146 ATTTAAAATTAT--
1 ATTT-AAATTATAA
*
25158 ATTATAAATTCTTAA
1 ATT-TAAATT-ATAA
25173 A-TTAAA-T-TAA
1 ATTTAAATTATAA
25183 ATTTAAATTAT
1 ATTTAAATTAT
25194 TTAATATTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 16
0.70 0.02 0.29
Matches are distributed among these distances:
10 4 0.10
11 5 0.13
12 10 0.26
13 11 0.28
14 8 0.21
15 1 0.03
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTAAATTATAA
Found at i:25176 original size:20 final size:19
Alignment explanation
Indices: 25135--25189 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
25125 ATAATATTAT
25135 TTAAATTATAAATTTAAAA
1 TTAAATTATAAATTTAAAA
* *
25154 TTATATTATAAATTCTTAAA
1 TTAAATTATAAATT-TAAAA
25174 TTAAA-T-TAAATTTAAA
1 TTAAATTATAAATTTAAA
25190 TTATTTAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
17 3 0.10
18 6 0.19
19 14 0.45
20 8 0.26
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
TTAAATTATAAATTTAAAA
Found at i:25197 original size:25 final size:24
Alignment explanation
Indices: 25133--25208 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 24
25123 TAATAATATT
*
25133 ATTTAAATTA-TAAATTTAAAATTAT
1 ATTTAAATTATTAAA-TT-AAATTAA
*
25158 ATTATAAATTCTTAAATTAAATTAA
1 ATT-TAAATTATTAAATTAAATTAA
25183 ATTTAAATTATTTAATATT-AATTAA
1 ATTTAAATTA-TTAA-ATTAAATTAA
25208 A
1 A
25209 AACACACTCT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
24 6 0.14
25 23 0.52
26 11 0.25
27 4 0.09
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (24 bp):
ATTTAAATTATTAAATTAAATTAA
Found at i:27126 original size:29 final size:30
Alignment explanation
Indices: 27056--27115 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
27046 TATGGACTAT
27056 GATATGAATTGTGATTTTATGCTTTTTAAA
1 GATATGAATTGTGATTTTATGCTTTTTAAA
27086 GATATGAATTGTGATTTTATGC-TTTTAAA
1 GATATGAATTGTGATTTTATGCTTTTTAAA
27115 G
1 G
27116 TTGGTCGTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 8 0.27
30 22 0.73
ACGTcount: A:0.30, C:0.03, G:0.18, T:0.48
Consensus pattern (30 bp):
GATATGAATTGTGATTTTATGCTTTTTAAA
Found at i:27843 original size:15 final size:16
Alignment explanation
Indices: 27817--27853 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
27807 TTATGCGATG
27817 CATTTGAATTTTTTTA
1 CATTTGAATTTTTTTA
*
27833 TATTT-AATTTTTTTA
1 CATTTGAATTTTTTTA
27848 CATTTG
1 CATTTG
27854 GATCAGATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.65
Consensus pattern (16 bp):
CATTTGAATTTTTTTA
Found at i:32495 original size:13 final size:13
Alignment explanation
Indices: 32477--32501 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32467 TAATATTAAT
32477 ATTTAAATTATAG
1 ATTTAAATTATAG
32490 ATTTAAATTATA
1 ATTTAAATTATA
32502 TTAATATGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (13 bp):
ATTTAAATTATAG
Found at i:32616 original size:15 final size:15
Alignment explanation
Indices: 32598--32627 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32588 GTTATATAGT
32598 TTATAAATATAATAA
1 TTATAAATATAATAA
*
32613 TTATAAATATCATAA
1 TTATAAATATAATAA
32628 GAATTTAGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (15 bp):
TTATAAATATAATAA
Found at i:37016 original size:16 final size:17
Alignment explanation
Indices: 36995--37039 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
36985 GGTATAGTTT
*
36995 AATTAATTTATTT-TAA
1 AATTAAATTATTTATAA
37011 AATTAAATTATTTATAA
1 AATTAAATTATTTATAA
*
37028 ATTATAAATTAT
1 AAT-TAAATTAT
37040 AAAATATCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 12 0.48
17 5 0.20
18 8 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AATTAAATTATTTATAA
Found at i:37203 original size:25 final size:27
Alignment explanation
Indices: 37149--37203 Score: 62
Period size: 26 Copynumber: 2.1 Consensus size: 27
37139 AGATTATATT
* *
37149 AATTGAAATTTTGTTAATATATTCTTA
1 AATTGAAATTTTGCTAATATATTCTAA
37176 AATT-AAATTTT-CTAATATTATT-TAA
1 AATTGAAATTTTGCTAATA-TATTCTAA
37201 AAT
1 AAT
37204 ATTTTTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
25 10 0.40
26 11 0.44
27 4 0.16
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (27 bp):
AATTGAAATTTTGCTAATATATTCTAA
Found at i:37209 original size:87 final size:88
Alignment explanation
Indices: 37046--37237 Score: 345
Period size: 88 Copynumber: 2.2 Consensus size: 88
37036 TTATAAAATA
37046 TCATAAGATTATATTAATTGAAATTATGTTAATATATTCTTAAATGAAATTTTTCTAATATTATT
1 TCATAAGATTATATTAATTGAAATTATGTTAATATATTCTTAAATGAAATTTTTCTAATATTATT
37111 TAAAATATTTTTATATAATTTAT
66 TAAAATATTTTTATATAATTTAT
* *
37134 TCATAAGATTATATTAATTGAAATTTTGTTAATATATTCTTAAATTAAA-TTTTCTAATATTATT
1 TCATAAGATTATATTAATTGAAATTATGTTAATATATTCTTAAATGAAATTTTTCTAATATTATT
37198 TAAAATATTTTTATATAATTTAT
66 TAAAATATTTTTATATAATTTAT
37221 TCATAA-ATTA-ATTAATT
1 TCATAAGATTATATTAATT
37238 TATATAATTT
Statistics
Matches: 102, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
85 7 0.07
86 4 0.04
87 44 0.43
88 47 0.46
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.52
Consensus pattern (88 bp):
TCATAAGATTATATTAATTGAAATTATGTTAATATATTCTTAAATGAAATTTTTCTAATATTATT
TAAAATATTTTTATATAATTTAT
Found at i:37255 original size:87 final size:88
Alignment explanation
Indices: 37046--37258 Score: 310
Period size: 87 Copynumber: 2.4 Consensus size: 88
37036 TTATAAAATA
37046 TCATAAGATTATATTAATTG-AAA-TTATGTTAATATATTCTTAAATGAAATTTTTCTAATATTA
1 TCATAAGATTATATTAATTGAAAATTTATG--AATATATTCTTAAATGAAATTTTTCTAATATTA
37109 TTTAAAATATTTTTATATAATTTAT
64 TTTAAAATATTTTTATATAATTTAT
* * * *
37134 TCATAAGATTATATTAATTGAAATTTTGTTAATATATTCTTAAATTAAA-TTTTCTAATATTATT
1 TCATAAGATTATATTAATTGAAAATTTATGAATATATTCTTAAATGAAATTTTTCTAATATTATT
37198 TAAAATATTTTTATATAATTTAT
66 TAAAATATTTTTATATAATTTAT
*
37221 TCATAA-ATTA-ATTAATTTATATAATTTATGAATATATT
1 TCATAAGATTATATTAATTGA-A-AATTTATGAATATATT
37259 AAGGATTAGG
Statistics
Matches: 113, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
85 8 0.07
86 5 0.04
87 57 0.50
88 38 0.34
89 2 0.02
90 3 0.03
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (88 bp):
TCATAAGATTATATTAATTGAAAATTTATGAATATATTCTTAAATGAAATTTTTCTAATATTATT
TAAAATATTTTTATATAATTTAT
Found at i:37534 original size:21 final size:20
Alignment explanation
Indices: 37492--37540 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
37482 ATAATATTAT
37492 TTAAATT-ATAAATTTAAAA
1 TTAAATTAATAAATTTAAAA
* *
37511 TTATATTAATAAATTCTTAAA
1 TTAAATTAATAAATT-TAAAA
37532 TTAAATTAA
1 TTAAATTAA
37541 ATTATTATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 6 0.24
20 7 0.28
21 12 0.48
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAAATTAATAAATTTAAAA
Found at i:38081 original size:26 final size:26
Alignment explanation
Indices: 38028--38082 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
38018 TTCAAACTCG
* **
38028 GATTATTAATGTTTGATTTGGATAAT
1 GATTATCAATGTTTGATTCAGATAAT
* *
38054 GATTATCATTGTTTGATTCAGATTAT
1 GATTATCAATGTTTGATTCAGATAAT
38080 GAT
1 GAT
38083 GTGAATTGTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.04, G:0.18, T:0.49
Consensus pattern (26 bp):
GATTATCAATGTTTGATTCAGATAAT
Found at i:38545 original size:3 final size:3
Alignment explanation
Indices: 38539--38565 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
38529 CTTGTTTTAG
38539 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
38566 TGTTGTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:40242 original size:15 final size:17
Alignment explanation
Indices: 40211--40248 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
40201 TTATGCGATG
40211 CATTTGAATTATTTTTA
1 CATTTGAATTATTTTTA
*
40228 TATTT-AATT-TTTTTA
1 CATTTGAATTATTTTTA
40243 CATTTG
1 CATTTG
40249 GATCAGATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 3
0.78 0.09 0.13
Matches are distributed among these distances:
15 10 0.56
16 4 0.22
17 4 0.22
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.63
Consensus pattern (17 bp):
CATTTGAATTATTTTTA
Found at i:44595 original size:13 final size:13
Alignment explanation
Indices: 44577--44601 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
44567 TAATATTAAT
44577 ATTTAAATTATAG
1 ATTTAAATTATAG
44590 ATTTAAATTATA
1 ATTTAAATTATA
44602 TTAATATGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (13 bp):
ATTTAAATTATAG
Found at i:47161 original size:21 final size:23
Alignment explanation
Indices: 47127--47169 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
47117 ATTTCCAATC
*
47127 ATATTCTATAAAATTATATTAAT
1 ATATTCTATAAAATTAAATTAAT
47150 ATATTCT-T-AAATTAAATTAA
1 ATATTCTATAAAATTAAATTAA
47170 CTTAGATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
22 1 0.05
23 7 0.37
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (23 bp):
ATATTCTATAAAATTAAATTAAT
Found at i:47363 original size:14 final size:14
Alignment explanation
Indices: 47344--47372 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
47334 TATTAATATT
47344 TAAACTATAAATTA
1 TAAACTATAAATTA
47358 TAAACTATAAATTA
1 TAAACTATAAATTA
47372 T
1 T
47373 TATATATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (14 bp):
TAAACTATAAATTA
Found at i:47818 original size:26 final size:26
Alignment explanation
Indices: 47787--47837 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
47777 ATTAATTTAA
*
47787 ATTATCATTGTTTCATTTGGATAATG
1 ATTATCATTGTTTAATTTGGATAATG
47813 ATTATCATTGTTTAATTTGGATAAT
1 ATTATCATTGTTTAATTTGGATAAT
47838 TTATTCTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.06, G:0.14, T:0.51
Consensus pattern (26 bp):
ATTATCATTGTTTAATTTGGATAATG
Found at i:47902 original size:26 final size:26
Alignment explanation
Indices: 47872--47926 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
47862 TTCAAACTCG
* *
47872 GATTATTAATGTTTGATTTGGATAAT
1 GATTATCAATGTTTGATTTGAATAAT
* *
47898 GATTATCATTGTTTGATTTGAATTAT
1 GATTATCAATGTTTGATTTGAATAAT
47924 GAT
1 GAT
47927 GTGAATTGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.02, G:0.18, T:0.51
Consensus pattern (26 bp):
GATTATCAATGTTTGATTTGAATAAT
Found at i:53032 original size:19 final size:20
Alignment explanation
Indices: 52995--53038 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
52985 AATTAAATTG
*
52995 ATTTAAATTATTATAATATT
1 ATTTAAATTATTATAATATA
* *
53015 ATTTAAA-TATTTTTATATA
1 ATTTAAATTATTATAATATA
53034 ATTTA
1 ATTTA
53039 TTCTTAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTTAAATTATTATAATATA
Found at i:53338 original size:13 final size:13
Alignment explanation
Indices: 53320--53344 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
53310 TAATATTAAT
53320 ATTTAAATTATAG
1 ATTTAAATTATAG
53333 ATTTAAATTATA
1 ATTTAAATTATA
53345 TTAATATGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (13 bp):
ATTTAAATTATAG
Found at i:57986 original size:88 final size:88
Alignment explanation
Indices: 57878--58070 Score: 363
Period size: 88 Copynumber: 2.2 Consensus size: 88
57868 TTATAAAATA
57878 TCATAAGATTATATTAATTGAAATTATGTTAATATATTCTTAAATGAAATTTTTCTAATATTATT
1 TCATAAGATTATATTAATTGAAATTATGTTAATATATTCTTAAATGAAATTTTTCTAATATTATT
57943 TAAAATATTTTTATATAATTTAT
66 TAAAATATTTTTATATAATTTAT
*
57966 TCATAAGATTATATTAATTGAAATTATGTTAATATATTCTTAAATTAAATTTTTCTAATATTATT
1 TCATAAGATTATATTAATTGAAATTATGTTAATATATTCTTAAATGAAATTTTTCTAATATTATT
58031 TAAAATATTTTTATATAATTTAT
66 TAAAATATTTTTATATAATTTAT
58054 TCATAA-ATTA-ATTAATT
1 TCATAAGATTATATTAATT
58071 TATATAATTT
Statistics
Matches: 104, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
86 7 0.07
87 4 0.04
88 93 0.89
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (88 bp):
TCATAAGATTATATTAATTGAAATTATGTTAATATATTCTTAAATGAAATTTTTCTAATATTATT
TAAAATATTTTTATATAATTTAT
Found at i:58377 original size:19 final size:18
Alignment explanation
Indices: 58326--58378 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 18
58316 ATAATATTAT
58326 TTAAATTATAAATTTAAAA
1 TTAAATT-TAAATTTAAAA
* *
58345 TTATATTATTAAATTCTTAAA
1 TTA-AAT-TTAAATT-TAAAA
58366 TTAAATTTAAATT
1 TTAAATTTAAATT
58379 ATTATAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
19 10 0.36
20 10 0.36
21 8 0.29
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
TTAAATTTAAATTTAAAA
Found at i:58391 original size:27 final size:27
Alignment explanation
Indices: 58321--58397 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
58311 ATATAATAAT
*
58321 ATTATTTAAATTA-TAAATTTAAAATTAT
1 ATTA-TTAAATTATTAAA-TTAAAATTAA
* *
58349 ATTATTAAATTCTTAAATTAAATTTAA
1 ATTATTAAATTATTAAATTAAAATTAA
58376 ATTATTATAA-TATT-AATTAAAA
1 ATTATTA-AATTATTAAATTAAAA
58398 CACACTCTAG
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
26 7 0.17
27 25 0.60
28 10 0.24
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (27 bp):
ATTATTAAATTATTAAATTAAAATTAA
Found at i:58995 original size:26 final size:26
Alignment explanation
Indices: 58964--59014 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
58954 ATTAATTTAA
58964 ATTATCATTGTTTCATTTGGATAATG
1 ATTATCATTGTTTCATTTGGATAATG
*
58990 ATTATCATTGTTTGATTTGGATAAT
1 ATTATCATTGTTTCATTTGGATAAT
59015 TTATTCTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.06, G:0.16, T:0.51
Consensus pattern (26 bp):
ATTATCATTGTTTCATTTGGATAATG
Found at i:59079 original size:26 final size:26
Alignment explanation
Indices: 59049--59103 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
59039 TTCAAACTCG
* *
59049 GATTATTAATGTTTGATTTGGATAAT
1 GATTATCAATGTTTGATTCGGATAAT
* *
59075 GATTATCATTGTTTGATTCGGATTAT
1 GATTATCAATGTTTGATTCGGATAAT
59101 GAT
1 GAT
59104 GTGAATTGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.49
Consensus pattern (26 bp):
GATTATCAATGTTTGATTCGGATAAT
Found at i:61257 original size:15 final size:17
Alignment explanation
Indices: 61224--61263 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 17
61214 ATTTATGCGA
61224 TACATTTGAATTATTTT
1 TACATTTGAATTATTTT
*
61241 TATATTT-AATT-TTTT
1 TACATTTGAATTATTTT
61256 TACATTTG
1 TACATTTG
61264 GATCAGATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
15 10 0.50
16 4 0.20
17 6 0.30
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (17 bp):
TACATTTGAATTATTTT
Found at i:65642 original size:21 final size:19
Alignment explanation
Indices: 65580--65643 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 19
65570 TGCCCCCATA
*
65580 TAATAATATTAATATTTAAAT
1 TAATAATTTTAA-A-TTAAAT
**
65601 T-ATAATTTTAAATTATGT
1 TAATAATTTTAAATTAAAT
65619 TAATATATTCTTAAATTAAAT
1 TAATA-ATT-TTAAATTAAAT
65640 TAAT
1 TAAT
65644 TTAAATTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
18 5 0.14
19 4 0.11
20 12 0.34
21 14 0.40
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (19 bp):
TAATAATTTTAAATTAAAT
Found at i:65662 original size:26 final size:26
Alignment explanation
Indices: 65599--65662 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
65589 TAATATTTAA
*
65599 ATTATAATTTTAAATTATGTTAATAT
1 ATTATAATATTAAATTATGTTAATAT
*
65625 ATTCTTAA-ATTAAATTAAT-TTAA-ATT
1 ATT-ATAATATTAAATT-ATGTTAATA-T
65651 ATTATAATATTA
1 ATTATAATATTA
65663 TTTAAATATT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
25 4 0.13
26 22 0.71
27 5 0.16
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (26 bp):
ATTATAATATTAAATTATGTTAATAT
Found at i:65679 original size:19 final size:20
Alignment explanation
Indices: 65640--65685 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
65630 TAAATTAAAT
65640 TAATTTAAATTATTATAATA
1 TAATTTAAATTATTATAATA
* * *
65660 TTATTTAAA-TATTTTTATA
1 TAATTTAAATTATTATAATA
65679 TAATTTA
1 TAATTTA
65686 TTCTTAAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TAATTTAAATTATTATAATA
Found at i:65979 original size:13 final size:13
Alignment explanation
Indices: 65961--65986 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65951 TAATATTAAT
65961 ATTTAAATTATAG
1 ATTTAAATTATAG
65974 ATTTAAATTATAG
1 ATTTAAATTATAG
65987 TAATATGTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
ATTTAAATTATAG
Found at i:66028 original size:367 final size:368
Alignment explanation
Indices: 65335--66043 Score: 888
Period size: 369 Copynumber: 1.9 Consensus size: 368
65325 TCTTAATTTA
* *
65335 AATTAATTAATTTATAAATATAATAAGAATTAGGATCCACTTATATTGTGTAAAACTCTTTTAGG
1 AATTAATTAATTTATAAATATAATAAGAATTAGGATCCACTTATACTATGTAAAACTCTTTTAGG
* * * *
65400 TTTGCATCTTTTTAGTCTCATTGGATTGAGAGAAATCAAGGGTTGAGATTAATTCGTTTATAGTG
66 -TTGCATCTTTTTAGGCTCATTGGATTAAGAGAAATCAAAGATTGAGATTAATTCGTTTATAGTG
* * * **
65465 AATATCTGTTCATTTTCCATGGTCAATCTTAGTCTTTAATTTATTTCATTCAATGGTCCTAAAAT
130 AATATCTGTTCATTTTCCACGATCAATCTTACTCTTTAATTTATCCCATTCAATGGTCCTAAAAT
* ** **
65530 GATGTAAAAATAAAGAGTTTTACACACTATAATTGGATTTTGCCCCCATATAATAATATTAATAT
195 GA-GTAAAAATAAAGAGTTTTACACAATATAATCAGATCCTGCCCCCATATAATAATATTAATAT
65595 TTAAATTATAATTTTAAATTATGTTAATATATTCTTAAATTAAATTAATTTAAATTATTATAATA
259 TTAAATTATAATTTTAAATTATGTTAATATATTCTTAAATTAAATTAATTTAAATTATTATAATA
*
65660 TTATTTAAATATTTTTATATAATTTATTCTTAAATTAAATTAATT
324 TTATTGAAATATTTTTATATAATTTATTCTTAAATTAAATTAATT
* * *
65705 AATTAATATAAATTT-TAAATATAATTAGGATTAGGATCCATTTATACTATGTAAAACTCTTTTA
1 AATTAAT-T-AATTTATAAATATAATAAGAATTAGGATCCACTTATACTATGTAAAACTCTTTTA
* * *
65769 -G-T-CA-CATTTTTAGAGC-CATTGGATTAAGATAAATCAAAGATTGAGATTAATTCATTTTTT
64 GGTTGCATC-TTTTTAG-GCTCATTGGATTAAGAGAAATCAAAGATTGAGATTAATTC--GTTTA
* * * * *
65829 TAGTGAATATCTTTTCATTTTCCACGATTAAT-TTCACTCTTTAATTTCTCCCA-TCTACTGGTT
125 TAGTGAATATCTGTTCATTTTCCACGATCAATCTT-ACTCTTTAATTTATCCCATTC-AATGGTC
* * *
65892 TTAAAATG-GTATAAACTAAAAGAGTTTTACACAATATAATCAGATCCTG-CCCTATATAATAAT
188 CTAAAATGAGTA-AAAAT-AAAGAGTTTTACACAATATAATCAGATCCTGCCCCCATATAATAAT
*
65955 ATTAATATTTAAATTATAGA-TTTAAATTATAG-TAATATGTTCTTAACA-TAAA-TAATTTAAA
251 ATTAATATTTAAATTATA-ATTTTAAATTAT-GTTAATATATTCTTAA-ATTAAATTAATTTAAA
*
66016 TTATTCTAATATTATTGAAATATTTTTA
313 TTATTATAATATTATTGAAATATTTTTA
66044 AATTAAATTA
Statistics
Matches: 293, Mismatches: 33, Indels: 29
0.83 0.09 0.08
Matches are distributed among these distances:
366 1 0.00
367 80 0.27
368 68 0.23
369 86 0.29
370 8 0.03
371 45 0.15
372 5 0.02
ACGTcount: A:0.38, C:0.10, G:0.09, T:0.44
Consensus pattern (368 bp):
AATTAATTAATTTATAAATATAATAAGAATTAGGATCCACTTATACTATGTAAAACTCTTTTAGG
TTGCATCTTTTTAGGCTCATTGGATTAAGAGAAATCAAAGATTGAGATTAATTCGTTTATAGTGA
ATATCTGTTCATTTTCCACGATCAATCTTACTCTTTAATTTATCCCATTCAATGGTCCTAAAATG
AGTAAAAATAAAGAGTTTTACACAATATAATCAGATCCTGCCCCCATATAATAATATTAATATTT
AAATTATAATTTTAAATTATGTTAATATATTCTTAAATTAAATTAATTTAAATTATTATAATATT
ATTGAAATATTTTTATATAATTTATTCTTAAATTAAATTAATT
Found at i:68548 original size:21 final size:23
Alignment explanation
Indices: 68514--68557 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
68504 ATTTCCAATC
*
68514 ATATTCTATAAAATTATATTAAT
1 ATATTCTATAAAATTAAATTAAT
68537 ATATTCT-T-AAATTAAATTAAT
1 ATATTCTATAAAATTAAATTAAT
68558 TTAGATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 1 0.05
23 7 0.35
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (23 bp):
ATATTCTATAAAATTAAATTAAT
Found at i:68750 original size:14 final size:14
Alignment explanation
Indices: 68731--68759 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
68721 TATTAATATT
68731 TAAACTATAAATTA
1 TAAACTATAAATTA
68745 TAAACTATAAATTA
1 TAAACTATAAATTA
68759 T
1 T
68760 TATATATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (14 bp):
TAAACTATAAATTA
Found at i:69740 original size:15 final size:15
Alignment explanation
Indices: 69720--69748 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
69710 TAGAACAGAC
69720 GCAGTGAGCAGTTTT
1 GCAGTGAGCAGTTTT
69735 GCAGTGAGCAGTTT
1 GCAGTGAGCAGTTT
69749 CAGCAAGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.34, T:0.31
Consensus pattern (15 bp):
GCAGTGAGCAGTTTT
Found at i:79878 original size:21 final size:20
Alignment explanation
Indices: 79830--79883 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
79820 AATATAATTT
**
79830 ATTTAAATTAAAATATCATA
1 ATTTAAATTAATTTATCATA
* *
79850 AATTAAATTAATTTATTCTTA
1 ATTTAAATTAATTTA-TCATA
79871 ATTTAAATTAATT
1 ATTTAAATTAATT
79884 AATTTATAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (20 bp):
ATTTAAATTAATTTATCATA
Found at i:80562 original size:19 final size:20
Alignment explanation
Indices: 80524--80568 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
80514 TAACATAAAA
80524 AATTTAAATTATTCTAATAT
1 AATTTAAATTATTCTAATAT
* * *
80544 TATTTAAA-TATTTTTATAT
1 AATTTAAATTATTCTAATAT
80563 AATTTA
1 AATTTA
80569 TTTTTAAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
AATTTAAATTATTCTAATAT
Found at i:85310 original size:34 final size:34
Alignment explanation
Indices: 85250--85315 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
85240 AAATTATTTA
* * *
85250 TATAATTTATTAATATAATAATAATAT-TTAAAT
1 TATAAATTATAAATATAATAAGAATATATTAAAT
*
85283 TATAAATTATAAAGTATCATAAGAATATATTAA
1 TATAAATTATAAA-TATAATAAGAATATATTAA
85316 TTAAATTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 11 0.41
34 12 0.44
35 4 0.15
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (34 bp):
TATAAATTATAAATATAATAAGAATATATTAAAT
Found at i:85318 original size:34 final size:32
Alignment explanation
Indices: 85249--85325 Score: 77
Period size: 34 Copynumber: 2.4 Consensus size: 32
85239 AAAATTATTT
* * *
85249 ATATAATTTATTAATATAATAATAATATTTAA
1 ATATAAATTATAAATATAATAAGAATATTTAA
*
85281 ATTATAAATTATAAAGTATCATAAGAATATATT-A
1 A-TATAAATTATAAA-TATAATAAGAATAT-TTAA
85315 AT-TAAATTATA
1 ATATAAATTATA
85326 TTATATATTC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
32 10 0.26
33 12 0.32
34 14 0.37
35 2 0.05
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (32 bp):
ATATAAATTATAAATATAATAAGAATATTTAA
Found at i:85384 original size:25 final size:25
Alignment explanation
Indices: 85354--85404 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 25
85344 AATTAATTTA
85354 AATTATCATTG-TTGATTTGGATAAT
1 AATTATCATTGTTTGA-TTGGATAAT
85379 AATTATCATTGTTTGATTGGATAAT
1 AATTATCATTGTTTGATTGGATAAT
85404 A
1 A
85405 TATTCTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (25 bp):
AATTATCATTGTTTGATTGGATAAT
Found at i:93946 original size:2 final size:2
Alignment explanation
Indices: 93941--93968 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
93931 ATATAGACTC
93941 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
93969 AAGGTTTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:97163 original size:2 final size:2
Alignment explanation
Indices: 97156--97187 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
97146 CTTTGAAACA
97156 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
97188 GAGTCTATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:106307 original size:22 final size:23
Alignment explanation
Indices: 106276--106329 Score: 83
Period size: 22 Copynumber: 2.3 Consensus size: 23
106266 TAATTTAAGA
106276 ATATATTATCCAAATCAAAC-ATG
1 ATAT-TTATCCAAATCAAACAATG
106299 ATATTTATCCAAATCAAACAATG
1 ATATTTATCCAAATCAAACAATG
106322 ATAATTTA
1 AT-ATTTA
106330 AATTAATTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
22 15 0.52
23 9 0.31
24 5 0.17
ACGTcount: A:0.48, C:0.15, G:0.04, T:0.33
Consensus pattern (23 bp):
ATATTTATCCAAATCAAACAATG
Found at i:106429 original size:33 final size:33
Alignment explanation
Indices: 106349--106431 Score: 89
Period size: 33 Copynumber: 2.5 Consensus size: 33
106339 CATTTAAGAA
* *
106349 TATATTAATATAATT-TAAATTATATATTCTTAT
1 TATATTAATA-AATTATAAATTAAATATTATTAT
* * *
106382 GATACTTTAT-AATTATAATTTAAATATTATTAT
1 TATA-TTAATAAATTATAAATTAAATATTATTAT
106415 TATATTAATAAATTATA
1 TATATTAATAAATTATA
106432 TAAATAATTT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
32 8 0.20
33 28 0.70
34 4 0.10
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (33 bp):
TATATTAATAAATTATAAATTAAATATTATTAT
Found at i:111943 original size:21 final size:20
Alignment explanation
Indices: 111917--111970 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
111907 TTTATAAATT
111917 AATTAATTTAAATTAAGAATA
1 AATTAATTTAAATTAAG-ATA
* *
111938 AATTAATTTAATTTATGATA
1 AATTAATTTAAATTAAGATA
**
111958 TTTTAATTTAAAT
1 AATTAATTTAAAT
111971 AAATAATATT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (20 bp):
AATTAATTTAAATTAAGATA
Found at i:115994 original size:15 final size:17
Alignment explanation
Indices: 115970--116006 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
115960 TAATCTGATC
*
115970 CAAATGTAAAAA-AATT
1 CAAATATAAAAATAATT
115986 -AAATATAAAAATAATT
1 CAAATATAAAAATAATT
116002 CAAAT
1 CAAAT
116007 GCATTGCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 10 0.56
16 4 0.22
17 4 0.22
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (17 bp):
CAAATATAAAAATAATT
Found at i:116810 original size:26 final size:25
Alignment explanation
Indices: 116746--116810 Score: 69
Period size: 26 Copynumber: 2.6 Consensus size: 25
116736 AAATAGCATA
* *
116746 AAATCAAA-ATTCATATCATAGTCC
1 AAATCAAACATTAATATCATAATCC
* * *
116770 ATATCAACCAATAATAATCATAATCC
1 AAATCAAACATTAAT-ATCATAATCC
116796 AAATCAAACATTAAT
1 AAATCAAACATTAAT
116811 CAGTCCTAAT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
24 6 0.19
25 4 0.13
26 21 0.68
ACGTcount: A:0.51, C:0.20, G:0.02, T:0.28
Consensus pattern (25 bp):
AAATCAAACATTAATATCATAATCC
Found at i:118403 original size:19 final size:19
Alignment explanation
Indices: 118379--118431 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
118369 ATATTATAAT
118379 AATTTA-AATTTAATTTAA
1 AATTTATAATTTAATTTAA
* *
118397 GAATTTATTAATATAATTTTA
1 -AATTTA-TAATTTAATTTAA
118418 AATTTATAATTTAA
1 AATTTATAATTTAA
118432 ATAATATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 13 0.45
20 6 0.21
21 10 0.34
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
AATTTATAATTTAATTTAA
Found at i:118799 original size:88 final size:87
Alignment explanation
Indices: 118685--118876 Score: 343
Period size: 88 Copynumber: 2.2 Consensus size: 87
118675 TAATTATATA
118685 AATTAAT-TAAT-TTATGAATAAATATATAAAAATATTTTAAATAATATTAGAAAAATTTAATTT
1 AATTAATATAATCTTATGAATAAATATATAAAAATATTTTAAATAATATTAGAAAAATTTAATTT
*
118748 AATAATATATTAACATAATTTC
66 AAGAATATATTAACATAATTTC
*
118770 AATTAATATAATCTTATGAATAAATTATATAAAAATATTTTAAATAATATTAGAAAAATTTCATT
1 AATTAATATAATCTTATGAATAAA-TATATAAAAATATTTTAAATAATATTAGAAAAATTTAATT
118835 TAAGAATATATTAACATAATTTC
65 TAAGAATATATTAACATAATTTC
118858 AATTAATATAATCTTATGA
1 AATTAATATAATCTTATGA
118877 TATTTTATAA
Statistics
Matches: 102, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
85 7 0.07
86 4 0.04
87 11 0.11
88 80 0.78
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.42
Consensus pattern (87 bp):
AATTAATATAATCTTATGAATAAATATATAAAAATATTTTAAATAATATTAGAAAAATTTAATTT
AAGAATATATTAACATAATTTC
Found at i:123453 original size:13 final size:13
Alignment explanation
Indices: 123435--123459 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
123425 AACATATTAA
123435 TATAATTTAAATC
1 TATAATTTAAATC
123448 TATAATTTAAAT
1 TATAATTTAAAT
123460 ATTAATATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
TATAATTTAAATC
Found at i:124030 original size:361 final size:369
Alignment explanation
Indices: 123377--124084 Score: 924
Period size: 361 Copynumber: 1.9 Consensus size: 369
123367 TAATTTAATT
*
123377 TAAAAATATTTAAATAATATTAGAATAATTTAAATTATTTATGTTAAGAACATATTAATATAATT
1 TAAAAATATTTAAATAATATTAGAATAATTTAAATAATTTATGTTAAGAACATATTAATATAA-T
** *
123442 TAAATCTATAATTTAAATATTAATATTATTATATAGGGCAGGATCTAATTATACTGTGTAAAACT
65 T-AATCTATAATTTAAATATTAATATTATTATATAGGGCAAAATCCAATTATACTGTGTAAAACT
* * * * * ***
123507 CTTTTAGTTTATACCATTTTAAGACCAGTAGATGGGAGAAATTAAAGAGTGAAATTAATTGTGGA
129 CTTTAAGTTTACACCATTTTAAGACCAGTAGATGGAAAAAATTAAAGACTGAAATTAACCATGGA
*
123572 AAATGAAAAGATATTCACTAAAAAAACGAATTAATCTCAATCTTTGATTTATCTCAATCCAATGG
194 AAATGAAAAGATATTCACTAAAAAAACAAATTAATCTCAATCTTTGATTTATCTCAATCCAATGG
* * * *
123637 CTCTAAAAATGTGTAAAACTAAAAGAGTTTTACATAGTATAAATGGATCCTAATCCTTATTATAT
259 CACTAAAAATGTGCAAAACTAAAAGAGTTTTACACAATATAAATGGATCCTAATCCTTATTATAT
123702 TTAAAAATT-ATATAATTTAATTAATTTAATTTAAGAATAAATTATA
324 TTAAAAATTAAT-TAATTTAATTAATTTAATTTAAGAATAAATTATA
* *
123748 TAAAAATATTTAAATATTATTATAATAATTTAAATCAATTTAAT-TTAAG-A-ATA-T-AT-TAA
1 TAAAAATATTTAAATAATATTAGAATAATTTAAAT-AATTT-ATGTTAAGAACATATTAATATAA
* *
123807 -T-AT-TATAATTTAAATATTAATATTATTATATGGGGGCAAAATCCAATTATAGTGTGTAAAAC
64 TTAATCTATAATTTAAATATTAATATTATTATAT-AGGGCAAAATCCAATTATACTGTGTAAAAC
* * * * * *
123869 TCTTTAATTTTACATCATTTTAGGATCATTGGAT-GAAAAAATTAAAGACT-AAGATTAACCATG
128 TCTTTAAGTTTACACCATTTTAAGACCAGTAGATGGAAAAAATTAAAGACTGAA-ATTAACCATG
* * *
123932 GAAAATGAACAGATATTCACT-AAAAAACAAATTAATCTCATTCTTTGATTTCTCTCAATCCAAT
192 GAAAATGAAAAGATATTCACTAAAAAAACAAATTAATCTCAATCTTTGATTTATCTCAATCCAAT
* * *
123996 GAG-ACTAAAAA-GATGCAAACCTAAAAGTGTTTTACACAATATAAGTGGATCCTAATCCTTATT
257 G-GCACTAAAAATG-TGCAAAACTAAAAGAGTTTTACACAATATAAATGGATCCTAATCCTTATT
*
124059 ATATTTATAAATTAATTAATTTAATT
320 ATATTTAAAAATTAATTAATTTAATT
124085 TATGATATTT
Statistics
Matches: 296, Mismatches: 34, Indels: 24
0.84 0.10 0.07
Matches are distributed among these distances:
360 1 0.00
361 116 0.39
362 71 0.24
363 53 0.18
365 1 0.00
367 3 0.01
368 2 0.01
369 1 0.00
370 3 0.01
371 34 0.11
372 9 0.03
373 2 0.01
ACGTcount: A:0.44, C:0.09, G:0.10, T:0.38
Consensus pattern (369 bp):
TAAAAATATTTAAATAATATTAGAATAATTTAAATAATTTATGTTAAGAACATATTAATATAATT
AATCTATAATTTAAATATTAATATTATTATATAGGGCAAAATCCAATTATACTGTGTAAAACTCT
TTAAGTTTACACCATTTTAAGACCAGTAGATGGAAAAAATTAAAGACTGAAATTAACCATGGAAA
ATGAAAAGATATTCACTAAAAAAACAAATTAATCTCAATCTTTGATTTATCTCAATCCAATGGCA
CTAAAAATGTGCAAAACTAAAAGAGTTTTACACAATATAAATGGATCCTAATCCTTATTATATTT
AAAAATTAATTAATTTAATTAATTTAATTTAAGAATAAATTATA
Found at i:130285 original size:26 final size:26
Alignment explanation
Indices: 130256--130310 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
130246 CACAATTCAC
* *
130256 ATCATAATTCAAATCAAACAATGATA
1 ATCATAATCCAAATCAAACAATAATA
* *
130282 ATCATTATCCAAATCAAACATTAATA
1 ATCATAATCCAAATCAAACAATAATA
130308 ATC
1 ATC
130311 CGAGTTTGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.51, C:0.18, G:0.02, T:0.29
Consensus pattern (26 bp):
ATCATAATCCAAATCAAACAATAATA
Found at i:130375 original size:26 final size:26
Alignment explanation
Indices: 130345--130395 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
130335 TTAAGAATAA
130345 ATTATCCAAATCAAACAATGATAATC
1 ATTATCCAAATCAAACAATGATAATC
*
130371 ATTATCCAAATGAAACAATGATAAT
1 ATTATCCAAATCAAACAATGATAAT
130396 TTAAATTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.51, C:0.16, G:0.06, T:0.27
Consensus pattern (26 bp):
ATTATCCAAATCAAACAATGATAATC
Found at i:130829 original size:14 final size:14
Alignment explanation
Indices: 130810--130838 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
130800 TAAATATATA
130810 ATAATTTATAGTTT
1 ATAATTTATAGTTT
130824 ATAATTTATAGTTT
1 ATAATTTATAGTTT
130838 A
1 A
130839 AATATTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (14 bp):
ATAATTTATAGTTT
Found at i:131036 original size:21 final size:23
Alignment explanation
Indices: 131012--131055 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
131002 AATAATCTAA
*
131012 ATTAATTTAA-TTTA-AGAATAT
1 ATTAATATAATTTTATAGAATAT
131033 ATTAATATAATTTTATAGAATAT
1 ATTAATATAATTTTATAGAATAT
131056 GATTGGAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 4 0.20
23 7 0.35
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (23 bp):
ATTAATATAATTTTATAGAATAT
Found at i:134632 original size:21 final size:20
Alignment explanation
Indices: 134602--134643 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
134592 TAATTTAAAT
*
134602 TTAATTTAATTTAAGAATTTA
1 TTAATATAATTTAA-AATTTA
*
134623 TTAATATAATTTTAAATTTA
1 TTAATATAATTTAAAATTTA
134643 T
1 T
134644 AATTTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
TTAATATAATTTAAAATTTA
Found at i:135064 original size:88 final size:89
Alignment explanation
Indices: 134905--135098 Score: 331
Period size: 88 Copynumber: 2.2 Consensus size: 89
134895 AAATTATATA
* *
134905 AATTAAT-TAAT-TTATGAATAAATTATATAAAAAATCTTTTAAATAATATTAGAAAATTTTAAT
1 AATTAATATAATCTTATGAATAAATTATATAAAAAATATTTTAAATAATATTAGAAAAATTTAAT
134968 TTAAGAATATATTAACAAAATTTC
66 TTAAGAATATATTAACAAAATTTC
*
134992 AATTAATATAATCTTATGAATAAATTATAT-AAAAATATTTTAAATAATATTAGAAAAATTTCAT
1 AATTAATATAATCTTATGAATAAATTATATAAAAAATATTTTAAATAATATTAGAAAAATTTAAT
*
135056 TTAAGAATATATTAACATAATTTC
66 TTAAGAATATATTAACAAAATTTC
135080 AATTAATATAATCTTATGA
1 AATTAATATAATCTTATGA
135099 TATTTTATAA
Statistics
Matches: 101, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
87 7 0.07
88 77 0.76
89 17 0.17
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (89 bp):
AATTAATATAATCTTATGAATAAATTATATAAAAAATATTTTAAATAATATTAGAAAAATTTAAT
TTAAGAATATATTAACAAAATTTC
Found at i:135134 original size:16 final size:16
Alignment explanation
Indices: 135116--135149 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
135106 TAATTTATAA
*
135116 TTTATAAATAATTTAAT
1 TTTA-AAATAAATTAAT
135133 TTTAAAATAAATTAAT
1 TTTAAAATAAATTAAT
135149 T
1 T
135150 AAACTATACC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTTAAAATAAATTAAT
Found at i:137313 original size:49 final size:49
Alignment explanation
Indices: 137241--137338 Score: 169
Period size: 49 Copynumber: 2.0 Consensus size: 49
137231 CAAATACATA
137241 GACAAATGATCCACGTTGTTACCTATATGAAATTCAAAACCAAGAGTAT
1 GACAAATGATCCACGTTGTTACCTATATGAAATTCAAAACCAAGAGTAT
* * *
137290 GACAACTGATCCACGTTGTTACCTGTATGAAATTCAAAACCAATAGTAT
1 GACAAATGATCCACGTTGTTACCTATATGAAATTCAAAACCAAGAGTAT
137339 AAAGACTAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (49 bp):
GACAAATGATCCACGTTGTTACCTATATGAAATTCAAAACCAAGAGTAT
Found at i:139983 original size:21 final size:20
Alignment explanation
Indices: 139959--140002 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
139949 TTTATAAACT
139959 ATAAAACAATATAATTTAAGA
1 ATAAAACAATATAATTTAA-A
** *
139980 ATAAATTAATTTAATTTAAA
1 ATAAAACAATATAATTTAAA
140000 ATA
1 ATA
140003 TTTAAATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
ATAAAACAATATAATTTAAA
Found at i:140005 original size:9 final size:10
Alignment explanation
Indices: 139969--140028 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 10
139959 ATAAAACAAT
139969 ATAATTTAAGA
1 ATAATTTAA-A
* *
139980 ATAAATTAAT
1 ATAATTTAAA
*
139990 TTAATTTAAA
1 ATAATTTAAA
140000 AT-ATTT-AA
1 ATAATTTAAA
*
140008 ATAATATTAGA
1 ATAAT-TTAAA
140019 ATAATTTAAA
1 ATAATTTAAA
140029 TTATTTATGT
Statistics
Matches: 38, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
8 4 0.11
9 6 0.16
10 14 0.37
11 14 0.37
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (10 bp):
ATAATTTAAA
Found at i:140071 original size:13 final size:13
Alignment explanation
Indices: 140053--140077 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
140043 AACATATTAA
140053 TATAATTTAAATC
1 TATAATTTAAATC
140066 TATAATTTAAAT
1 TATAATTTAAAT
140078 ATTAATATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
TATAATTTAAATC
Found at i:140367 original size:19 final size:20
Alignment explanation
Indices: 140339--140382 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
140329 AATTTAAGAA
*
140339 TAAATTATATAAAAAT-ATT
1 TAAATAATATAAAAATAATT
* *
140358 TAAATAATATTATAATAATT
1 TAAATAATATAAAAATAATT
140378 TAAAT
1 TAAAT
140383 CAATTTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TAAATAATATAAAAATAATT
Found at i:140391 original size:26 final size:26
Alignment explanation
Indices: 140362--140425 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
140352 AATATTTAAA
140362 TAATATTATAATA-ATTTAA-ATCAATT
1 TAATATTATAATATA-TTAATAT-AATT
*
140388 TAAT-TTAAGAATATATTAATATAATT
1 TAATATT-ATAATATATTAATATAATT
*
140414 TAAAATTATAAT
1 TAATATTATAAT
140426 TTAAATATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
25 2 0.06
26 24 0.77
27 5 0.16
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (26 bp):
TAATATTATAATATATTAATATAATT
Found at i:140425 original size:13 final size:14
Alignment explanation
Indices: 140407--140435 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
140397 AATATATTAA
140407 TATAATTTAAA-AT
1 TATAATTTAAATAT
140420 TATAATTTAAATAT
1 TATAATTTAAATAT
140434 TA
1 TA
140436 ATATTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TATAATTTAAATAT
Found at i:146928 original size:26 final size:26
Alignment explanation
Indices: 146899--146953 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
146889 CACAATTCAC
* *
146899 ATCATAATTCAAATCAAACAATGATA
1 ATCATAATCCAAATCAAACAATAATA
* *
146925 ATCATTATCCAAATCAAACATTAATA
1 ATCATAATCCAAATCAAACAATAATA
146951 ATC
1 ATC
146954 CGAGTTTGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.51, C:0.18, G:0.02, T:0.29
Consensus pattern (26 bp):
ATCATAATCCAAATCAAACAATAATA
Found at i:147018 original size:26 final size:26
Alignment explanation
Indices: 146988--147038 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
146978 TTAAGAATAA
146988 ATTATCCAAATCAAACAATGATAATC
1 ATTATCCAAATCAAACAATGATAATC
*
147014 ATTATCCAAATGAAACAATGATAAT
1 ATTATCCAAATCAAACAATGATAAT
147039 TTAAATTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.51, C:0.16, G:0.06, T:0.27
Consensus pattern (26 bp):
ATTATCCAAATCAAACAATGATAATC
Found at i:147662 original size:21 final size:20
Alignment explanation
Indices: 147632--147673 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
147622 TAATTTAAAT
*
147632 TTAATTTAATTTAAGAATTTA
1 TTAATATAATTTAA-AATTTA
*
147653 TTAATATAATTTTAAATTTA
1 TTAATATAATTTAAAATTTA
147673 T
1 T
147674 AATTTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
TTAATATAATTTAAAATTTA
Found at i:150258 original size:49 final size:49
Alignment explanation
Indices: 150186--150283 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
150176 CAAATACATA
150186 GACAAATGATCCACGTTGTTACCTGTATGAAATTCAAAACCAAGAGTAT
1 GACAAATGATCCACGTTGTTACCTGTATGAAATTCAAAACCAAGAGTAT
* *
150235 GACAACTGATCCACGTTGTTACCTGTATGAAATTCAAAACCAATAGTAT
1 GACAAATGATCCACGTTGTTACCTGTATGAAATTCAAAACCAAGAGTAT
150284 AAAGACTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (49 bp):
GACAAATGATCCACGTTGTTACCTGTATGAAATTCAAAACCAAGAGTAT
Found at i:153467 original size:2 final size:2
Alignment explanation
Indices: 153460--153488 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
153450 AAATATTTGG
153460 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
153489 ATTAAAGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:160025 original size:2 final size:2
Alignment explanation
Indices: 160018--160065 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
160008 CTTTGAAACA
160018 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
160060 TC TC TC
1 TC TC TC
160066 GAGTCTATAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:161649 original size:265 final size:263
Alignment explanation
Indices: 161138--161657 Score: 979
Period size: 265 Copynumber: 2.0 Consensus size: 263
161128 AGAACAAGGA
161138 TCATTAAGCCCAGCAGCAACAGGGGTTCAGCATCTGCCCAAACCAAAACTTCAGCTCCTAGGGTC
1 TCATTAAGCCCAGCAGCAACAGGGGTTCAGCATCTGCCCAAACCAAAACTTCAGCTCCTAGGGTC
161203 ACTCTTGATTTGATGCAACTAGCTGGATTGGGGGATGATACCCAAAATCCAGCTCAACTAATTGA
66 ACTCTTGATTTGATGCAACTAGCTGGATTGGGGGATGATACCCAAAATCCAGCTCAACTAATTGA
*
161268 TGCACCAGCTATCCACTAACTCTTAGTTCATCAATGGCTGCTTCTTTGACTAGAGACCCTCATTT
131 TGCACCAGCTATCCACCAACTCTTAGTTCATCAATGGCTGCTTCTTTGACTAGAGACCCTCATTT
*
161333 CACAGTAGCTCTTGCTGCAGCCATTTCAGGCCGAGTTGTAAACCAAAATATGATAAGAAAATCTA
196 CACAGCAGCTCTTGCTGCAGCCATTTCAGGCCGAGTTGTAAACCAAAATATGATAAGAAAATCTA
161398 CTG
261 CTG
*
161401 TCATGTAAGCCCCAGCAGCAACAGGGGTTCAGCATCTGCCCAAACCAAAGCTTCAGCTCCTAGGG
1 TCAT-TAAG-CCCAGCAGCAACAGGGGTTCAGCATCTGCCCAAACCAAAACTTCAGCTCCTAGGG
161466 TCACTCTTGATTTGATGCAACTAGCTGGATTGGGGGATGATACCCAAAATCCAGCTCAACTAATT
64 TCACTCTTGATTTGATGCAACTAGCTGGATTGGGGGATGATACCCAAAATCCAGCTCAACTAATT
161531 GATGCACCAGCTATCCACCAACTCTTAGTTCATCAAATGGCTGCTTCTTTGACTAGAGACCCTCA
129 GATGCACCAGCTATCCACCAACTCTTAGTTCATC-AATGGCTGCTTCTTTGACTAGAGACCCTCA
161596 TTTCACAGCAGCTCTTGCTGCAGCCATTTCAGGCCGAGTTGTAAACC-AAATATGATAAGAAA
193 TTTCACAGCAGCTCTTGCTGCAGCCATTTCAGGCCGAGTTGTAAACCAAAATATGATAAGAAA
161658 GTCATAGTTT
Statistics
Matches: 251, Mismatches: 3, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
263 4 0.02
264 4 0.02
265 167 0.67
266 76 0.30
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (263 bp):
TCATTAAGCCCAGCAGCAACAGGGGTTCAGCATCTGCCCAAACCAAAACTTCAGCTCCTAGGGTC
ACTCTTGATTTGATGCAACTAGCTGGATTGGGGGATGATACCCAAAATCCAGCTCAACTAATTGA
TGCACCAGCTATCCACCAACTCTTAGTTCATCAATGGCTGCTTCTTTGACTAGAGACCCTCATTT
CACAGCAGCTCTTGCTGCAGCCATTTCAGGCCGAGTTGTAAACCAAAATATGATAAGAAAATCTA
CTG
Found at i:169079 original size:7 final size:7
Alignment explanation
Indices: 169067--169103 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
169057 GTTAAAGGAA
169067 GTCAACG
1 GTCAACG
169074 GTCAACG
1 GTCAACG
*
169081 GTC-ACA
1 GTCAACG
169087 GTCAACG
1 GTCAACG
169094 GTCAACG
1 GTCAACG
169101 GTC
1 GTC
169104 GGGTCGGGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
6 5 0.19
7 22 0.81
ACGTcount: A:0.27, C:0.30, G:0.27, T:0.16
Consensus pattern (7 bp):
GTCAACG
Found at i:169091 original size:20 final size:20
Alignment explanation
Indices: 169066--169103 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
169056 GGTTAAAGGA
169066 AGTCAACGGTCAACGGTCAC
1 AGTCAACGGTCAACGGTCAC
169086 AGTCAACGGTCAACGGTC
1 AGTCAACGGTCAACGGTC
169104 GGGTCGGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.29, G:0.26, T:0.16
Consensus pattern (20 bp):
AGTCAACGGTCAACGGTCAC
Found at i:175918 original size:18 final size:17
Alignment explanation
Indices: 175895--175928 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
175885 AAATTAACGT
175895 TATTCTAGATGAAAAAAA
1 TATTCTAGAT-AAAAAAA
*
175913 TATTCTATATAAAAAA
1 TATTCTAGATAAAAAA
175929 GCATATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (17 bp):
TATTCTAGATAAAAAAA
Found at i:176960 original size:23 final size:23
Alignment explanation
Indices: 176908--176961 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
176898 TAAATGTTCA
*
176908 ATTCATTTAACATTCACGAACAT
1 ATTCGTTTAACATTCACGAACAT
* ** *
176931 ATGCGTTTAACATTCGTGAATAT
1 ATTCGTTTAACATTCACGAACAT
176954 ATTCGTTT
1 ATTCGTTT
176962 GGCATTTGTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (23 bp):
ATTCGTTTAACATTCACGAACAT
Found at i:177074 original size:21 final size:23
Alignment explanation
Indices: 177033--177074 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
177023 CCACTAATCC
177033 TTAAGCTCTAAAAGTTTCACAGT
1 TTAAGCTCTAAAAGTTTCACAGT
*
177056 TTAAGCT-TCAAAG-TTCACA
1 TTAAGCTCTAAAAGTTTCACA
177075 TTGTGTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 5 0.28
23 7 0.39
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (23 bp):
TTAAGCTCTAAAAGTTTCACAGT
Found at i:181512 original size:36 final size:36
Alignment explanation
Indices: 181465--181540 Score: 152
Period size: 36 Copynumber: 2.1 Consensus size: 36
181455 CAGTTGGTTG
181465 CCATGTCGCTTTGACTTTTTATTTTTCTTGAAGTAA
1 CCATGTCGCTTTGACTTTTTATTTTTCTTGAAGTAA
181501 CCATGTCGCTTTGACTTTTTATTTTTCTTGAAGTAA
1 CCATGTCGCTTTGACTTTTTATTTTTCTTGAAGTAA
181537 CCAT
1 CCAT
181541 ACCCAGCACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (36 bp):
CCATGTCGCTTTGACTTTTTATTTTTCTTGAAGTAA
Found at i:186201 original size:34 final size:36
Alignment explanation
Indices: 186157--186256 Score: 168
Period size: 34 Copynumber: 2.8 Consensus size: 36
186147 TTTCGTCCTA
*
186157 CTAGGATTCAAACTCCTAAAAATAGGATATAA-TTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAAAATTTT
186192 -TAGGATTCAAACTCCTAAAAATAGGATAAAATTTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAAAATTTT
186227 GCTAGGATTCAAACTCCTAAAAATAGGATA
1 -CTAGGATTCAAACTCCTAAAAATAGGATA
186257 GAGTTCTACT
Statistics
Matches: 61, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
34 30 0.49
35 3 0.05
37 28 0.46
ACGTcount: A:0.44, C:0.14, G:0.13, T:0.29
Consensus pattern (36 bp):
CTAGGATTCAAACTCCTAAAAATAGGATAAAATTTT
Found at i:186282 original size:37 final size:37
Alignment explanation
Indices: 186154--186292 Score: 167
Period size: 37 Copynumber: 3.8 Consensus size: 37
186144 ATTTTTCGTC
*
186154 CTACTAGGATTCAAACTCCTAAAAATAGGATATAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
186191 -T--TAGGATTCAAACTCCTAAAAATAGGATAAAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
186225 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
** * * *
186262 CTACTATTATTTAAATTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
186293 CCACAAGCAC
Statistics
Matches: 89, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
34 32 0.36
35 1 0.01
36 1 0.01
37 55 0.62
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.32
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
Found at i:186819 original size:20 final size:20
Alignment explanation
Indices: 186794--186831 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
186784 ATTATTATTA
186794 TTTTACTTATATATATATGC
1 TTTTACTTATATATATATGC
* *
186814 TTTTACTTTTTTATATAT
1 TTTTACTTATATATATAT
186832 TTTACTCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.08, G:0.03, T:0.63
Consensus pattern (20 bp):
TTTTACTTATATATATATGC
Found at i:186863 original size:16 final size:18
Alignment explanation
Indices: 186842--186876 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
186832 TTTACTCATT
186842 TATTTAT-CTAT-TTTTA
1 TATTTATCCTATATTTTA
186858 TATTTATCCTATATTTTA
1 TATTTATCCTATATTTTA
186876 T
1 T
186877 GTTTTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 4 0.24
18 6 0.35
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.66
Consensus pattern (18 bp):
TATTTATCCTATATTTTA
Found at i:190689 original size:16 final size:16
Alignment explanation
Indices: 190663--190744 Score: 59
Period size: 16 Copynumber: 5.1 Consensus size: 16
190653 AGATCCAATC
190663 AAGAACAAAAAAG-AA
1 AAGAACAAAAAAGCAA
190678 AAGAAGCAAAAAAGCAA
1 AAGAA-CAAAAAAGCAA
*
190695 AA-AA-AAACAAAGAAA
1 AAGAACAAA-AAAGCAA
190710 AAGAGA-AACAAGAA-CAA
1 AAGA-ACAA-AA-AAGCAA
190727 AAGAA-AAAAAGAGCAA
1 AAGAACAAAAA-AGCAA
190743 AA
1 AA
190745 ATCAAAAAGA
Statistics
Matches: 56, Mismatches: 2, Indels: 17
0.75 0.03 0.23
Matches are distributed among these distances:
14 4 0.07
15 16 0.29
16 19 0.34
17 14 0.25
18 3 0.05
ACGTcount: A:0.77, C:0.09, G:0.15, T:0.00
Consensus pattern (16 bp):
AAGAACAAAAAAGCAA
Found at i:190711 original size:23 final size:22
Alignment explanation
Indices: 190669--190758 Score: 74
Period size: 23 Copynumber: 3.9 Consensus size: 22
190659 AATCAAGAAC
*
190669 AAAAAAGAAAAGAAGCAAAAAAG
1 AAAAAAGAAAA-AAGAAAAAAAG
*
190692 CAAAAAA-AAACAAAGAAAAAGAG
1 -AAAAAAGAAA-AAAGAAAAAAAG
*
190715 AAACAAGAACAAAAGAAAAAAAG
1 AAAAAAGAA-AAAAGAAAAAAAG
**
190738 AGCAAAAATCAAAAAGAAAAA
1 A--AAAAAGAAAAAAGAAAAA
190759 GGGACAAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
22 5 0.09
23 26 0.48
24 18 0.33
25 5 0.09
ACGTcount: A:0.78, C:0.08, G:0.13, T:0.01
Consensus pattern (22 bp):
AAAAAAGAAAAAAGAAAAAAAG
Found at i:191421 original size:22 final size:22
Alignment explanation
Indices: 191396--191444 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
191386 CCATCAATCT
* *
191396 TTTGAGCATCCAATGTCAAACC
1 TTTGAGCATCAAATGCCAAACC
191418 TTTGAGCATCAAATGCCAAACC
1 TTTGAGCATCAAATGCCAAACC
191440 TTTGA
1 TTTGA
191445 CCAAGCACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (22 bp):
TTTGAGCATCAAATGCCAAACC
Found at i:192416 original size:36 final size:36
Alignment explanation
Indices: 192373--192442 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
192363 ACTAGAAGAG
*
192373 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
1 TTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAA
*
192409 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
1 TTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACA
192443 TAAACATTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (36 bp):
TTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAA
Found at i:192497 original size:65 final size:63
Alignment explanation
Indices: 192384--192916 Score: 320
Period size: 65 Copynumber: 7.9 Consensus size: 63
192374 TTTGTCTCTC
* *
192384 TTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
1 TTGAAACA-TTTCCCTTGAAATAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA-AAACA
*
192449 TTGAAAACATTTCCCTTGAAATAAATTTTGTCTCCCTTGAGATAGTTTCTCTTGAAACATAAACA
1 TTG-AAACATTTCCCTTGAAATAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA-AAACA
* * * *
192514 TTGAAAACATTTCCCTTGAAATAAATTTCGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTT
1 TTG-AAACATTTCCCTTGAAATAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAA---
*
192579 TGTCTCTC
62 -----C-A
* * * *
192587 TTGAGACAATTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATA
1 TTGAAAC-ATTTCCCTTGAAATAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAACA
* * * * * * *
192651 TTTG-AATATGTTCTCTTTGAAACAAATTTCGTCTCCCTTGAGAGAGTTTCTTTTGGAACTAAGT
1 -TTGAAACAT-TTC-CCTTGAAATAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAAC-AA--
** *
192715 TTTGTCTCTC
60 -----AAC-A
* * **
192725 TTGAGACAGTTTCTCTTG-AA-AAATTTTCGTCTATCTTGAGACAGTTTC-CTTTGAAACAAAAT
1 TTGAAACA-TTTCCCTTGAAATAAATTTT-GTCTCCCTTGAGACAGTTTCTC-TTGAAACAAAA-
*
192787 CT
62 CA
** * * * *
192789 TTGAATTTATTTCCCCTAAAACAAATTTTGTCTCCCTTGAGACAGTTACTCTTGAAACACAAA-A
1 TTGAA-ACATTTCCCTTGAAATAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA-AAACA
* * * * * * * *
192853 TCTTCAAATTTATTTCCCTTAAAACATAATTTTGTTTCTCTTGAGACCGTTTCTCATGAAACAA
1 --TTGAAA--CATTTCCCTTGAAATA-AATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAA
192917 CAGATATCTT
Statistics
Matches: 373, Mismatches: 57, Indels: 74
0.74 0.11 0.15
Matches are distributed among these distances:
63 2 0.01
64 17 0.05
65 182 0.49
66 21 0.06
67 16 0.04
68 31 0.08
71 8 0.02
72 29 0.08
73 61 0.16
74 5 0.01
75 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (63 bp):
TTGAAACATTTCCCTTGAAATAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAACA
Found at i:192585 original size:37 final size:36
Alignment explanation
Indices: 192523--192654 Score: 192
Period size: 36 Copynumber: 3.6 Consensus size: 36
192513 ATTGAAAACA
* * *
192523 TTTCCCTTGAAATAAATTTCGTCTCTCTTGAGATAG
1 TTTCCCTTGAAAAAAATTTTGTCTCTCTTGAGACAG
*
192559 TTTCCCTTGAAACAAAATTTTGTCTCTCTTGAGACAA
1 TTTCCCTTGAAA-AAAATTTTGTCTCTCTTGAGACAG
*
192596 TTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAG
1 TTTCCCTTGAAAAAAATTTTGTCTCTCTTGAGACAG
192632 TTTCCCTTGAAACAAAATATTTG
1 TTTCCCTTGAAA-AAAAT-TTTG
192655 AATATGTTCT
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
36 46 0.53
37 36 0.42
38 4 0.05
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (36 bp):
TTTCCCTTGAAAAAAATTTTGTCTCTCTTGAGACAG
Found at i:192642 original size:138 final size:137
Alignment explanation
Indices: 192393--192847 Score: 479
Period size: 138 Copynumber: 3.4 Consensus size: 137
192383 CTTGAGACAG
* *
192393 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAA--------C-A
1 TTTCCCTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTCTTGAAACA-AAATTTTGTCTCTC
* * * *
192449 TTGA-AAACATTTCCCTTGAAATAAATTTTGTCTCCCTTGAGATAGTTTCTCTTGAAACATAAAC
65 TTGAGACA-ATTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA-AAAC
*
192513 ATTGAAAACA
128 ATTGAAAATA
* * * *
192523 TTTCCCTTGAAATAAATTTCGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCTCT
1 TTTCCCTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATTTTGTCTCTCT
*
192588 TGAGACAATTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATATT
66 TGAGACAATTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAACA-T
192653 TG--AATA
130 TGAAAATA
* * * * * *
192659 TGTTCTCTTTGAAACAAATTTCGTCTCCCTTGAGAGAGTTTCTTTTGGAACTAAGTTTTGTCTCT
1 T-TTC-CCTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATTTTGTCTCT
* * * *
192724 CTTGAGACAGTTTCTCTTG-AA-AAATTTTCGTCTATCTTGAGACAGTTTCCTTTGAAACAAAAT
64 CTTGAGACAATTTCCCTTGAAATAAATTTT-GTCTCTCTTGAGACAGTTTCCCTTGAAACAAAA-
* **
192787 CTTTGAATTTA
127 CATTGAAAATA
* * * *
192798 TTTCCCCTAAAACAAATTTTGTCTCCCTTGAGACAGTTACTCTTGAAACA
1 TTTCCCTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTCTTGAAACA
192848 CAAAATCTTC
Statistics
Matches: 270, Mismatches: 38, Indels: 27
0.81 0.11 0.08
Matches are distributed among these distances:
129 3 0.01
130 45 0.17
136 11 0.04
137 81 0.30
138 125 0.46
139 5 0.02
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (137 bp):
TTTCCCTTGAAACAAATTTCGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATTTTGTCTCTCT
TGAGACAATTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAACATT
GAAAATA
Found at i:192864 original size:67 final size:67
Alignment explanation
Indices: 192745--192915 Score: 213
Period size: 68 Copynumber: 2.6 Consensus size: 67
192735 TTCTCTTGAA
* **
192745 AAATTTTCGTCTATCTTGAGACAGTTTC-CTTTG-AA-ACAAAATCTTTGAATTTATTTCCCCTA
1 AAATTTT-GTCTCTCTTGAGACAGTTTCTC-TTGAAACACAAAATCTTCAAATTTATTTCCCCTA
192807 AAAC
64 AAAC
* * *
192811 AAATTTTGTCTCCCTTGAGACAGTTACTCTTGAAACACAAAATCTTCAAATTTATTTCCCTTAAA
1 AAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAATTTATTTCCCCTAAA
192876 AC
66 AC
* * *
192878 ATAATTTTGTTTCTCTTGAGACCGTTTCTCATGAAACA
1 A-AATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACA
192916 ACAGATATCT
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
65 20 0.22
66 10 0.11
67 29 0.32
68 31 0.34
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (67 bp):
AAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAATTTATTTCCCCTAAA
AC
Found at i:193735 original size:105 final size:105
Alignment explanation
Indices: 193506--194112 Score: 936
Period size: 105 Copynumber: 5.8 Consensus size: 105
193496 GCCATCCGCG
* * * * * * *
193506 ATTTCAACTCCACGACGGAGGATATCGTGGCACTCGAGACAACACAAGTTCAACTTCACAATGAA
1 ATTTCAACTTCACAACGAAGGATAT--TGG-ACTCCAGACAACGCAAGTTCAACTTCACGACGAA
* *
193571 GGGACGGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
63 GGGACCGCTGCTTGTCAAC-AACAACTTCTCAATTTCAGAGCCA
193615 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
193680 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
* *
193720 ATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGATGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
193785 ACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
*
193825 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
193890 ACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
193930 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
**
193995 ACCGCTGCTTGTCAACAA-AA-TT-TC-A-TTCAGATTCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
* * *
194030 ATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
194095 ACGGCTGGTTGTCAACAA
66 ACCGCTGCTTGTCAACAA
194113 ACAATTTCCC
Statistics
Matches: 472, Mismatches: 26, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
100 85 0.18
101 1 0.00
102 1 0.00
103 2 0.00
104 2 0.00
105 309 0.65
106 47 0.10
107 3 0.01
109 22 0.05
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (105 bp):
ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
Found at i:194428 original size:34 final size:36
Alignment explanation
Indices: 194384--194485 Score: 172
Period size: 34 Copynumber: 2.9 Consensus size: 36
194374 TTTCGTCCTA
194384 CTAGGATTCAAACTCCTAAAAATAGGATAGAA-TTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
*
194419 -TAGGATTCAAACTCCTAAAAATAGGATAAAATTTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
194454 GCTAGGATTCAAACTCCTAAAAATAGGATAGA
1 -CTAGGATTCAAACTCCTAAAAATAGGATAGA
194486 GTTCTACTAT
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
34 30 0.48
35 3 0.05
37 29 0.47
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (36 bp):
CTAGGATTCAAACTCCTAAAAATAGGATAGAATTTT
Found at i:195090 original size:16 final size:18
Alignment explanation
Indices: 195069--195103 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
195059 TTTACTCATT
195069 TATTTAT-CTAT-TTTTA
1 TATTTATCCTATATTTTA
195085 TATTTATCCTATATTTTA
1 TATTTATCCTATATTTTA
195103 T
1 T
195104 GTTTTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 4 0.24
18 6 0.35
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.66
Consensus pattern (18 bp):
TATTTATCCTATATTTTA
Found at i:198205 original size:17 final size:18
Alignment explanation
Indices: 198169--198209 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
198159 ATATTATGTA
*
198169 TTTAATTTATTTAAGCAT
1 TTTACTTTATTTAAGCAT
*
198187 TTTACTTTATTTAA-TAT
1 TTTACTTTATTTAAGCAT
198204 TTTACT
1 TTTACT
198210 AATATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTACTTTATTTAAGCAT
Found at i:200363 original size:26 final size:24
Alignment explanation
Indices: 200292--200363 Score: 62
Period size: 26 Copynumber: 3.0 Consensus size: 24
200282 TTATATTTGT
200292 ATTTACTTTATTTTGTTAAATTGTA
1 ATTTACTTTATTTTGTTAAATT-TA
*
200317 ATTT--TTTATTATT-TCT-CATTTA
1 ATTTACTTTATT-TTGT-TAAATTTA
200339 ATACTTACTTTATTTTGTTAAATTT
1 AT--TTACTTTATTTTGTTAAATTT
200364 GTTGGACTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 15
0.69 0.04 0.28
Matches are distributed among these distances:
22 4 0.11
23 10 0.27
24 5 0.14
25 7 0.19
26 11 0.30
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.62
Consensus pattern (24 bp):
ATTTACTTTATTTTGTTAAATTTA
Found at i:200431 original size:35 final size:33
Alignment explanation
Indices: 200392--200476 Score: 82
Period size: 35 Copynumber: 2.5 Consensus size: 33
200382 GTATTTCAGT
200392 TAATTTTGTT-TATTACCATTTAATATCAGTTATTG
1 TAATTTTGTTATATTACCATTTAAT-TC--TTATTG
**
200427 TAATTGGGTTATCATTTACCATTTAATTCTTATTG
1 TAATTTTGTTAT-A-TTACCATTTAATTCTTATTG
* *
200462 TAAGTTTGTTGTATT
1 TAATTTTGTTATATT
200477 TAAAATTATA
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
33 2 0.05
34 1 0.02
35 22 0.54
36 1 0.02
37 3 0.07
38 12 0.29
ACGTcount: A:0.26, C:0.08, G:0.12, T:0.54
Consensus pattern (33 bp):
TAATTTTGTTATATTACCATTTAATTCTTATTG
Found at i:203540 original size:51 final size:50
Alignment explanation
Indices: 203477--203594 Score: 159
Period size: 51 Copynumber: 2.3 Consensus size: 50
203467 TAGTGCGGAT
*
203477 CAGGGGGCGCGCTATACAC-ACATGTAAGCCATGTCAGCGTATAATATGGTA
1 CAGGGGG-GCGCTATAC-CTACATGTAAGCCATGTCAGCGTATAACATGGTA
* *
203528 CAGGGGGTGCGCTATACCTACGTGTAAGCCATGTCAGCGTATAACGTGGTA
1 CAGGGGG-GCGCTATACCTACATGTAAGCCATGTCAGCGTATAACATGGTA
*
203579 TA-GGGGGCGCTATACC
1 CAGGGGGGCGCTATACC
203595 CCACGTGGCG
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
49 10 0.16
50 5 0.08
51 46 0.75
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (50 bp):
CAGGGGGGCGCTATACCTACATGTAAGCCATGTCAGCGTATAACATGGTA
Found at i:204244 original size:21 final size:21
Alignment explanation
Indices: 204220--204266 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
204210 ATTATGACTA
204220 TCGCATTGAGATTTCCCAAAT
1 TCGCATTGAGATTTCCCAAAT
* * * *
204241 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGAGATTTCCCAAAT
204262 TCGCA
1 TCGCA
204267 ATGTGAATAC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (21 bp):
TCGCATTGAGATTTCCCAAAT
Found at i:204325 original size:19 final size:20
Alignment explanation
Indices: 204262--204426 Score: 183
Period size: 20 Copynumber: 8.3 Consensus size: 20
204252 TTTTCCTAAT
* *
204262 TCGCAATGTGAATACGTAAA
1 TCGCAATGCGATTACGTAAA
* ** *
204282 TCGCAATGTGAATTTGGAAAA
1 TCGCAATGCG-ATTACGTAAA
204303 TCGCAATGCGATTACGT-AA
1 TCGCAATGCGATTACGTAAA
*
204322 TCGCATTGCGATT-CGTAAA
1 TCGCAATGCGATTACGTAAA
*
204341 TCACAATGCGATTACGTAAA
1 TCGCAATGCGATTACGTAAA
204361 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGATTACGTAAA
*
204381 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGATTACGTAAA
* * *
204401 TCGAAATACGAAT-CTGTAAA
1 TCGCAATGCGATTAC-GTAAA
204421 TCGCAA
1 TCGCAA
204427 AGAGATTCTG
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
18 3 0.02
19 28 0.22
20 79 0.63
21 15 0.12
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (20 bp):
TCGCAATGCGATTACGTAAA
Found at i:204348 original size:59 final size:60
Alignment explanation
Indices: 204262--204402 Score: 187
Period size: 59 Copynumber: 2.4 Consensus size: 60
204252 TTTTCCTAAT
* * * **
204262 TCGCAATGTGAATACGTAAATCGCAATGTGAATTTGGAAAATCGCAATGCGATTACGT-AA
1 TCGCAATGCGAATACGTAAATCACAATGCG-ATTACGAAAATCGCAATGCGATTACGTAAA
* * *
204322 TCGCATTGCG-ATTCGTAAATCACAATGCGATTACGTAAATCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAATCACAATGCGATTACGAAAATCGCAATGCGATTACGTAAA
204381 TCGCAATGCGAATACGTAAATC
1 TCGCAATGCGAATACGTAAATC
204403 GAAATACGAA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
58 24 0.35
59 27 0.39
60 18 0.26
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (60 bp):
TCGCAATGCGAATACGTAAATCACAATGCGATTACGAAAATCGCAATGCGATTACGTAAA
Found at i:205297 original size:24 final size:24
Alignment explanation
Indices: 205270--205316 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
205260 GTATTCGAAA
205270 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
*
205294 TTTGATCTTGGTCAATACTCGGA
1 TTTGATCTTGGTCAATACCCGGA
205317 TTTTTGATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:206130 original size:14 final size:14
Alignment explanation
Indices: 206111--206147 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
206101 TCCCGTGACA
206111 TTTTCTTCGGGGAC
1 TTTTCTTCGGGGAC
*
206125 TTTTCTTCGGGGAT
1 TTTTCTTCGGGGAC
206139 TTCTTCTTC
1 TT-TTCTTC
206148 TTGTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.05, C:0.22, G:0.22, T:0.51
Consensus pattern (14 bp):
TTTTCTTCGGGGAC
Found at i:206405 original size:24 final size:24
Alignment explanation
Indices: 206354--206405 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
206344 ATCCAAGTAT
** *
206354 TGACCAAGATCAAAGTCCGGGTAT
1 TGACCAAGATCAAAGTCCGAATAC
* *
206378 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTCCGAATAC
206402 TGAC
1 TGAC
206406 TAGTACTCAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (24 bp):
TGACCAAGATCAAAGTCCGAATAC
Found at i:207279 original size:20 final size:20
Alignment explanation
Indices: 207217--207282 Score: 87
Period size: 20 Copynumber: 3.3 Consensus size: 20
207207 AATTCAGTGA
207217 TGCGATAGTCAGAATCGCGT
1 TGCGATAGTCAGAATCGCGT
* * *
207237 TACGATAGGCAGAATCGCAT
1 TGCGATAGTCAGAATCGCGT
**
207257 TGCGATAGTCAGAATCATGT
1 TGCGATAGTCAGAATCGCGT
207277 TGCGAT
1 TGCGAT
207283 TTACATATTC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (20 bp):
TGCGATAGTCAGAATCGCGT
Found at i:207403 original size:20 final size:19
Alignment explanation
Indices: 207378--207423 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
207368 GGAAACTGAT
*
207378 TTGCGATAATAGAGATCGCG
1 TTGCGAT-ATAGAGATCGCA
*
207398 TTGCGATTTAGAGATCGCA
1 TTGCGATATAGAGATCGCA
207417 TTGCGAT
1 TTGCGAT
207424 TTTGTTGGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (19 bp):
TTGCGATATAGAGATCGCA
Found at i:207411 original size:19 final size:19
Alignment explanation
Indices: 207387--207425 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
207377 TTTGCGATAA
*
207387 TAGAGATCGCGTTGCGATT
1 TAGAGATCGCATTGCGATT
207406 TAGAGATCGCATTGCGATT
1 TAGAGATCGCATTGCGATT
207425 T
1 T
207426 TGTTGGTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (19 bp):
TAGAGATCGCATTGCGATT
Found at i:209847 original size:3 final size:3
Alignment explanation
Indices: 209833--209906 Score: 64
Period size: 3 Copynumber: 24.7 Consensus size: 3
209823 TCATTTCGTT
**
209833 TTA TTA TT- TTA TTA TTA AAA TTA TTA TTA TTA TTA -TA TATA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA
* *
209878 TTA TTA -TA ATA TTA TTAA ATA TTA TTA TT
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TT
209907 TAAAATAAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
2 6 0.10
3 44 0.75
4 9 0.15
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:209881 original size:13 final size:12
Alignment explanation
Indices: 209833--209905 Score: 63
Period size: 11 Copynumber: 6.6 Consensus size: 12
209823 TCATTTCGTT
*
209833 TTATTAT-TTTA
1 TTATTATATATA
209844 TTATTA-A-A-A
1 TTATTATATATA
209853 TTATTAT-TATTA
1 TTATTATATA-TA
209865 TTATATATATATA
1 TTAT-TATATATA
209878 TTATTATA-ATA
1 TTATTATATATA
209889 TTATTA-A-ATA
1 TTATTATATATA
209899 TTATTAT
1 TTATTAT
209906 TTAAAATAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 16
0.76 0.01 0.23
Matches are distributed among these distances:
9 7 0.13
10 11 0.21
11 15 0.28
12 9 0.17
13 9 0.17
14 2 0.04
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATTATATATA
Found at i:209913 original size:25 final size:23
Alignment explanation
Indices: 209842--209906 Score: 73
Period size: 24 Copynumber: 2.9 Consensus size: 23
209832 TTTATTATTT
*
209842 TATTATTAAA-ATTATTATT-AT
1 TATTATTAAATATTATTATTAAA
*
209863 TATTA-TATATATATATTATTATAA
1 TATTATTAAATAT-TATTATTA-AA
209887 TATTATTAAATATTATTATT
1 TATTATTAAATATTATTATT
209907 TAAAATAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
20 3 0.08
21 7 0.19
22 7 0.19
24 13 0.36
25 6 0.17
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
TATTATTAAATATTATTATTAAA
Done.