genome.fa.s8587.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008587.1 Hibiscus syriacus cultivar Beakdansim tig00111524_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68498

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1394--1451	30	1.9	30	100	0	116	51	13	10	24	1.72
1397--1459	30	2.1	29	88	8	92	50	11	14	23	1.74
7940--7992	21	2.5	21	81	6	54	13	5	49	32	1.65
11062--11101	20	2.0	21	90	5	64	22	20	25	32	1.98
11114--11154	18	2.3	18	86	0	55	14	12	24	48	1.78
12737--12796	31	1.9	31	93	0	102	28	21	16	33	1.95
17009--17097	31	2.9	30	80	8	92	29	19	17	33	1.95
27637--27688	21	2.5	21	81	3	61	38	19	25	17	1.93
27674--27751	41	1.9	41	86	0	111	39	21	16	21	1.92
27677--27771	20	4.7	20	78	2	82	33	24	17	24	1.96
28266--28303	20	1.9	20	88	0	58	13	15	21	50	1.78
29623--29667	18	2.5	18	88	0	72	26	44	15	13	1.83
30140--30185	20	2.3	20	88	0	65	36	26	21	15	1.93
30194--30252	14	3.9	14	81	16	73	50	22	16	10	1.75
30179--30269	32	2.8	32	91	3	137	49	20	17	12	1.78
30286--30343	14	3.9	14	79	16	71	8	17	25	48	1.75
30281--30359	32	2.4	33	95	2	142	10	18	24	46	1.80
30300--30417	20	6.4	19	77	11	95	13	20	24	41	1.88
32423--32490	19	3.8	19	85	14	101	47	17	22	13	1.82
32509--32566	20	2.9	20	94	0	98	17	22	22	37	1.93
33622--33675	24	2.2	24	90	0	81	24	16	20	38	1.92
33850--33874	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36160--36286	33	3.8	33	86	4	193	42	18	22	15	1.89
36161--36293	66	2.0	66	95	0	239	41	18	22	17	1.90
36286--36328	20	2.2	20	87	4	61	16	18	23	41	1.89
36314--36347	14	2.4	14	85	0	50	8	23	20	47	1.78
36469--36519	14	3.6	14	94	0	84	43	25	0	31	1.55
37875--37941	21	3.2	21	68	4	55	19	20	35	23	1.95
37875--37997	42	2.9	41	80	7	113	22	17	36	22	1.95
40017--40115	33	3.0	33	87	1	144	39	25	24	11	1.88
39992--40156	19	9.1	19	75	15	143	42	21	23	12	1.87
40152--40232	19	4.5	19	74	16	73	11	17	24	46	1.80
40750--40801	20	2.6	20	90	0	77	25	19	26	28	1.98
40769--40846	41	1.9	41	83	0	102	20	17	21	39	1.92
40832--40887	21	2.7	21	94	0	94	14	25	19	41	1.89
42207--42313	55	1.9	55	88	0	160	41	19	6	32	1.77
44476--44546	3	24.3	3	94	5	128	35	0	0	64	0.94
45495--45536	19	2.3	18	80	11	50	30	2	0	66	1.04
51264--51338	20	3.8	20	90	0	123	44	20	18	17	1.88
51899--51951	20	2.7	20	96	0	97	15	22	37	24	1.92
51942--52084	64	2.2	63	89	6	216	30	18	21	30	1.97
52048--52087	19	2.1	19	85	0	53	22	15	27	35	1.94
53121--53148	14	2.0	14	100	0	56	50	7	0	42	1.30
55009--55036	14	2.0	14	100	0	56	42	0	7	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56048--56202	64	2.4	63	84	4	195	31	22	17	28	1.96
56189--56241	20	2.7	20	100	0	106	24	39	20	15	1.91
57649--57685	19	1.9	19	88	0	56	78	5	8	8	1.09
60767--60804	16	2.4	16	83	12	51	39	2	2	55	1.28
60769--60804	17	2.2	16	90	5	54	38	2	2	55	1.29
61660--61698	19	2.1	19	95	0	69	23	30	2	43	1.67
63857--64086	102	2.3	100	79	10	234	20	27	19	33	1.96

Tables:   1

The End!