genome.fa.s8588.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008588.1 Hibiscus syriacus cultivar Beakdansim tig00111533_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63769

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507--1987	188	7.7	196	81	8	1507	31	17	14	37	1.89
507--1976	386	3.8	383	81	9	1511	31	17	13	37	1.89
507--1974	579	2.5	571	82	7	1745	31	17	13	37	1.89
1968--2005	18	2.1	19	95	5	69	10	10	34	44	1.73
2372--2410	18	2.2	18	95	0	69	53	10	2	33	1.48
4143--4232	32	2.8	32	91	1	144	23	44	1	31	1.61
4159--4211	18	3.2	18	66	20	51	24	39	0	35	1.56
4273--4337	21	3.1	21	95	0	112	13	35	10	40	1.80
9331--9701	60	6.2	60	82	11	406	27	49	9	13	1.72
9398--9633	51	4.3	51	82	16	301	27	50	8	13	1.70
9669--9708	21	1.9	21	94	0	71	35	57	7	0	1.27
9608--9752	69	2.1	69	94	0	254	26	50	10	13	1.73
14419--14511	32	2.9	33	78	7	104	43	12	6	37	1.69
14456--14526	32	2.2	32	84	0	88	46	12	4	36	1.62
14554--14602	20	2.5	20	93	0	80	40	6	10	42	1.63
14587--14647	29	2.1	30	84	9	81	45	3	3	47	1.35
14879--14918	18	2.2	18	86	0	53	62	2	0	35	1.09
16298--16330	2	16.5	2	93	0	57	54	0	0	45	0.99
16928--17024	39	2.5	39	82	0	113	31	26	7	34	1.84
19744--19792	25	1.9	26	87	4	73	38	4	4	53	1.39
25614--25650	16	2.3	16	100	0	74	32	35	5	27	1.79
27331--27486	39	4.0	38	82	4	134	30	23	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32564--32604	8	5.2	8	82	5	57	34	0	29	36	1.58
32675--33941	128	9.9	128	94	1	2229	23	25	20	31	1.98
32675--33941	255	5.0	256	97	0	2281	23	25	20	31	1.98
32675--33941	383	3.3	384	94	1	2229	23	25	20	31	1.98
34362--34431	28	2.5	28	88	2	88	40	1	4	54	1.29
34362--34421	27	2.2	28	87	3	86	40	1	3	55	1.27
34332--34430	33	3.2	32	73	19	100	38	2	5	54	1.34
34951--35040	21	4.3	22	91	5	125	21	26	33	18	1.96
35049--35096	21	2.3	21	85	0	60	22	12	39	25	1.89
36804--36834	16	1.9	16	93	0	53	58	3	0	38	1.15
36813--36889	32	2.4	31	79	14	86	61	1	0	37	1.05
43942--43990	2	25.0	2	95	4	91	51	0	0	48	1.00
53735--53796	23	2.7	23	89	0	88	38	6	19	35	1.77
53833--53998	23	7.2	23	95	0	287	36	7	21	35	1.81
54025--54083	23	2.6	23	78	2	57	38	10	15	35	1.81
53948--54176	86	2.7	86	91	2	379	41	11	13	33	1.81
54111--54170	23	2.6	23	83	0	75	40	10	16	33	1.82
54416--54467	24	2.2	24	80	16	65	55	5	0	38	1.24
54509--54576	27	2.6	26	75	20	70	51	1	1	45	1.19
54524--54581	28	2.1	27	81	12	64	50	0	1	48	1.11
55262--55358	28	3.4	28	73	8	81	48	1	1	49	1.14
55457--56127	197	3.4	196	89	4	948	38	14	16	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56120--56176	23	2.4	23	73	2	60	38	17	8	35	1.81
56207--56252	23	2.1	22	88	8	67	34	21	8	34	1.84
57526--57608	29	2.8	29	92	1	139	43	9	14	32	1.78
62236--62317	28	2.8	29	92	5	139	43	9	14	31	1.78

Tables:   1

The End!