Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008589.1 Hibiscus syriacus cultivar Beakdansim tig00111538_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60538

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6348--6393
2
23.0
2
100
0
92
50
0
0
50
1.00
16162--16223
23
2.7
23
89
0
88
38
6
19
35
1.77
16260--16424
23
7.2
23
95
1
287
36
7
21
35
1.81
16451--16510
23
2.6
23
78
0
57
40
10
15
35
1.80
16538--16597
23
2.6
23
83
0
75
40
10
16
33
1.82
16374--16603
87
2.7
86
93
0
388
41
11
13
33
1.81
16842--16893
24
2.2
24
80
16
65
55
5
0
38
1.24
16902--16946
14
3.1
14
81
15
56
42
0
2
55
1.12
16874--17014
28
5.4
28
69
18
81
47
0
2
49
1.18
16954--17019
30
2.2
31
83
8
82
48
0
1
50
1.10
17702--17791
28
3.3
28
72
7
78
50
1
1
47
1.15
17731--17799
30
2.3
31
82
9
81
49
0
1
49
1.09
17900--18578
198
3.4
198
89
2
992
38
14
16
31
1.88
18571--18627
23
2.4
23
73
2
60
38
17
8
35
1.81
18658--18714
23
2.5
23
76
0
69
31
17
8
42
1.80
19992--20074
29
2.8
29
92
1
139
43
9
14
32
1.78
24759--24841
29
2.8
29
92
1
139
43
9
14
32
1.78
30436--30468
2
16.5
2
100
0
66
51
0
0
48
1.00
30796--30828
2
16.5
2
100
0
66
51
0
0
48
1.00
31225--31271
11
4.2
11
86
5
58
68
4
6
21
1.30
31342--31386
12
3.7
12
81
3
54
66
0
4
28
1.11
31937--32044
37
2.9
37
87
0
162
32
14
13
38
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32773--33829
106
10.0
105
87
3
1396
23
18
24
34
1.96
32772--33829
318
3.4
317
90
1
1549
23
18
24
34
1.96
34654--34705
22
2.4
22
90
0
77
26
11
26
34
1.91
34667--34708
22
1.9
22
100
0
84
23
11
26
38
1.90
39922--39958
2
18.5
2
100
0
74
51
0
0
48
1.00
40278--40302
2
12.5
2
100
0
50
52
0
0
48
1.00
40607--40651
12
3.7
12
81
3
54
66
0
4
28
1.11
41211--41307
37
2.6
38
83
4
126
34
9
15
41
1.79
41328--41527
109
1.8
110
86
3
294
33
24
15
27
1.95
44098--44173
8
8.6
8
74
16
53
9
14
0
76
1.02
44098--44160
9
6.9
9
81
15
76
7
12
0
79
0.93
44100--44156
20
2.9
20
94
2
98
7
12
0
80
0.89
60233--60308
6
12.3
6
77
5
80
13
31
17
38
1.88
60233--60307
31
2.4
31
100
0
150
13
32
16
38
1.87

Tables:   1

The End!