genome.fa.s859.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000859.1 Hibiscus syriacus cultivar Beakdansim tig00001664_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105688

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2619--2667	2	24.0	2	89	4	71	44	4	0	51	1.20
3102--3185	23	3.7	23	88	0	114	29	28	26	15	1.96
5408--5442	2	17.5	2	100	0	70	51	48	0	0	1.00
5442--5483	2	21.0	2	100	0	84	50	0	0	50	1.00
8160--8185	11	2.4	11	100	0	52	92	7	0	0	0.39
15498--15536	5	7.8	5	88	0	51	15	35	41	7	1.76
30309--30339	2	15.5	2	100	0	62	48	0	0	51	1.00
31286--31368	29	2.8	29	87	1	121	40	10	15	32	1.82
34702--34731	15	2.0	15	93	0	51	13	0	30	56	1.37
36023--36105	29	2.8	29	87	1	121	42	12	14	31	1.82
38888--39455	84	6.7	83	79	3	607	25	19	25	29	1.98
38864--39445	169	3.5	167	83	4	659	25	20	24	30	1.99
38928--39408	252	1.9	252	87	1	703	25	20	23	30	1.99
39563--40043	110	4.4	110	89	2	713	23	17	23	35	1.95
43791--43911	16	7.7	15	67	15	59	74	3	5	16	1.15
43787--43852	24	2.7	25	81	9	73	78	0	9	12	0.95
43794--43913	36	3.3	36	72	17	86	73	3	5	17	1.17
46255--46292	20	1.9	20	100	0	76	21	26	21	31	1.98
46273--46315	13	3.1	14	80	6	52	32	20	16	30	1.95
46283--46318	13	2.7	13	91	4	54	33	22	16	27	1.95
49894--49944	2	25.5	2	95	0	93	49	0	1	49	1.12
51283--51316	6	5.7	6	96	0	50	23	0	58	17	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52126--52166	14	3.1	14	79	13	50	46	0	0	53	1.00
52552--52610	25	2.3	26	85	8	77	50	0	5	44	1.24
53881--54201	21	15.4	20	71	14	136	21	18	24	35	1.95
53994--54222	42	5.4	42	90	2	341	21	17	22	38	1.93
53994--54222	86	2.7	84	89	2	359	21	17	22	38	1.93
53962--54251	128	2.3	125	87	4	431	22	18	21	37	1.94
53962--54243	21	13.4	21	76	12	224	21	17	21	38	1.93
55012--55060	6	8.5	6	97	2	84	0	16	53	30	1.43
55150--55385	42	5.6	42	93	3	368	34	23	21	20	1.96
55150--55412	63	4.2	60	80	12	289	34	23	20	20	1.96
55220--55412	105	1.9	102	91	6	316	34	24	20	20	1.96
59514--59579	6	10.3	6	75	12	60	43	1	1	53	1.19
59482--59580	40	2.6	38	80	7	101	41	1	2	55	1.18
59880--59933	21	2.6	21	78	0	63	27	20	20	31	1.97
60843--60902	24	2.5	24	77	0	66	28	16	16	38	1.91
61661--61814	23	6.8	23	93	2	260	29	27	22	20	1.99
61661--61814	68	2.3	68	93	3	258	29	27	22	20	1.99
68610--68697	22	3.9	22	85	4	113	30	25	20	23	1.98
69654--69750	20	4.8	20	88	0	131	28	19	19	31	1.96
69721--70003	140	2.0	140	95	0	503	43	15	11	29	1.82
70061--70095	18	1.9	18	94	0	61	20	2	22	54	1.58
72547--72697	74	2.0	75	97	2	286	32	9	27	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73043--73076	14	2.4	14	95	0	59	47	17	0	35	1.48
74397--74463	21	3.2	21	78	4	73	25	19	34	20	1.96
74397--74516	42	2.9	42	78	5	127	28	16	34	20	1.95
75006--75073	20	3.4	20	93	0	109	33	25	19	22	1.97
75069--75136	33	2.1	33	83	5	84	50	19	16	14	1.79
75135--75211	33	2.3	34	86	2	102	12	18	22	46	1.82
75203--75271	20	3.5	20	86	7	88	17	18	26	37	1.93
77631--77695	22	3.0	21	82	4	60	21	16	43	18	1.88
77638--77695	22	2.6	22	86	0	89	18	18	43	18	1.89
77960--78007	19	2.5	19	93	3	78	22	14	27	35	1.93
84451--84539	30	3.0	30	81	4	101	33	4	1	60	1.24
84573--84626	26	2.1	26	100	0	108	44	3	3	48	1.38
87556--87609	22	2.5	22	76	8	65	70	12	3	12	1.30

Tables:   1

The End!