Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008591.1 Hibiscus syriacus cultivar Beakdansim tig00111540_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1730314
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 1 of 8
Found at i:1105 original size:18 final size:18
Alignment explanation
Indices: 1079--1149 Score: 80
Period size: 18 Copynumber: 4.2 Consensus size: 18
1069 AACGGTCAAT
*
1079 GGGTCAACGGGTCGGGTC
1 GGGTAAACGGGTCGGGTC
1097 GGGTAAA-----CGGGTC
1 GGGTAAACGGGTCGGGTC
1110 GGGTAAACGGGTCGGGTC
1 GGGTAAACGGGTCGGGTC
* *
1128 GGGTCAACGGTTCGGGTC
1 GGGTAAACGGGTCGGGTC
1146 GGGT
1 GGGT
1150 TGTGACCGGT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
13 13 0.29
18 32 0.71
ACGTcount: A:0.14, C:0.18, G:0.49, T:0.18
Consensus pattern (18 bp):
GGGTAAACGGGTCGGGTC
Found at i:1107 original size:13 final size:13
Alignment explanation
Indices: 1091--1126 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
1081 GTCAACGGGT
1091 CGGGTCGGGTAAA
1 CGGGTCGGGTAAA
1104 CGGGTCGGGTAAA
1 CGGGTCGGGTAAA
1117 CGGGTCGGGT
1 CGGGTCGGGT
1127 CGGGTCAACG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.50, T:0.17
Consensus pattern (13 bp):
CGGGTCGGGTAAA
Found at i:1121 original size:31 final size:31
Alignment explanation
Indices: 1079--1144 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
1069 AACGGTCAAT
*
1079 GGGTCAACGGGTCGGGTCGGGTAAACGGGTC
1 GGGTAAACGGGTCGGGTCGGGTAAACGGGTC
* *
1110 GGGTAAACGGGTCGGGTCGGGTCAACGGTTC
1 GGGTAAACGGGTCGGGTCGGGTAAACGGGTC
1141 GGGT
1 GGGT
1145 CGGGTTGTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.15, C:0.18, G:0.48, T:0.18
Consensus pattern (31 bp):
GGGTAAACGGGTCGGGTCGGGTAAACGGGTC
Found at i:4891 original size:18 final size:18
Alignment explanation
Indices: 4868--4902 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4858 CTTCCATCGG
*
4868 TCTTATTATTTAATTCAA
1 TCTTATCATTTAATTCAA
*
4886 TCTTATCATTTACTTCA
1 TCTTATCATTTAATTCA
4903 GTCCTTTCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (18 bp):
TCTTATCATTTAATTCAA
Found at i:6186 original size:8 final size:8
Alignment explanation
Indices: 6153--6207 Score: 58
Period size: 8 Copynumber: 6.5 Consensus size: 8
6143 TCAAAGTTTT
6153 GGTCAACAG
1 GGTCAAC-G
6162 TGGTCAACG
1 -GGTCAACG
6171 ACGGTCAACG
1 --GGTCAACG
6181 GGTCAAC-
1 GGTCAACG
*
6188 GGTCAATG
1 GGTCAACG
6196 GGTCAACG
1 GGTCAACG
6204 GGTC
1 GGTC
6208 GGGTCGGGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
7 6 0.15
8 18 0.45
9 1 0.03
10 15 0.38
ACGTcount: A:0.25, C:0.24, G:0.35, T:0.16
Consensus pattern (8 bp):
GGTCAACG
Found at i:6191 original size:15 final size:15
Alignment explanation
Indices: 6171--6204 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
6161 GTGGTCAACG
6171 ACGGTCAACGGGTCA
1 ACGGTCAACGGGTCA
*
6186 ACGGTCAATGGGTCA
1 ACGGTCAACGGGTCA
6201 ACGG
1 ACGG
6205 GTCGGGTCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.24, G:0.35, T:0.15
Consensus pattern (15 bp):
ACGGTCAACGGGTCA
Found at i:6221 original size:18 final size:18
Alignment explanation
Indices: 6195--6247 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
6185 AACGGTCAAT
6195 GGGTCAACGGGTCGGGTC
1 GGGTCAACGGGTCGGGTC
* *
6213 GGGTAAACGGGTCGGGTT
1 GGGTCAACGGGTCGGGTC
6231 GGGTCAACGGGTCGGGT
1 GGGTCAACGGGTCGGGT
6248 GTTGTGACTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.13, C:0.17, G:0.51, T:0.19
Consensus pattern (18 bp):
GGGTCAACGGGTCGGGTC
Found at i:10017 original size:18 final size:18
Alignment explanation
Indices: 9994--10028 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9984 TTCCATCCGG
*
9994 TCTTATTATTTAATTCAA
1 TCTTATCATTTAATTCAA
*
10012 TCTTATCATTTACTTCA
1 TCTTATCATTTAATTCA
10029 GTCCTTTTCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (18 bp):
TCTTATCATTTAATTCAA
Found at i:11340 original size:18 final size:18
Alignment explanation
Indices: 11317--11373 Score: 105
Period size: 18 Copynumber: 3.2 Consensus size: 18
11307 GACGGTCAAT
11317 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
*
11335 GGTCAACGGGTCAGGTCG
1 GGTCAACGGGTCGGGTCG
11353 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCG
11371 GGT
1 GGT
11374 TGTGACAGGT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.12, C:0.21, G:0.49, T:0.18
Consensus pattern (18 bp):
GGTCAACGGGTCGGGTCG
Found at i:14652 original size:29 final size:28
Alignment explanation
Indices: 14608--14697 Score: 89
Period size: 26 Copynumber: 3.1 Consensus size: 28
14598 TAGAAAAGCC
14608 AGAATGAGAAATAGCTTAGCAAAGCTATTAG
1 AGAATGA-AAA-AGCTTAGCAAAGCTA-TAG
14639 AGAATGAAAAAGCTTAGCAAAGC-A-AG
1 AGAATGAAAAAGCTTAGCAAAGCTATAG
*
14665 -GACGA-GAAATAGCTTAGCAAAGCTATGAG
1 AGA--ATGAAAAAGCTTAGCAAAGCTAT-AG
14694 AGAA
1 AGAA
14698 AAGGTGAAGC
Statistics
Matches: 52, Mismatches: 1, Indels: 15
0.76 0.01 0.22
Matches are distributed among these distances:
25 2 0.04
26 19 0.37
27 2 0.04
28 2 0.04
29 15 0.29
30 5 0.10
31 7 0.13
ACGTcount: A:0.48, C:0.11, G:0.24, T:0.17
Consensus pattern (28 bp):
AGAATGAAAAAGCTTAGCAAAGCTATAG
Found at i:14655 original size:55 final size:55
Alignment explanation
Indices: 14587--14697 Score: 168
Period size: 55 Copynumber: 2.0 Consensus size: 55
14577 GAAAAGGAAT
* * * *
14587 ATGAAAAGGCTTAGAAAAGCCAGAATGAGAAATAGCTTAGCAAAGCTATTAGAGA
1 ATGAAAAAGCTTAGAAAAGCAAGAACGAGAAATAGCTTAGCAAAGCTATGAGAGA
* *
14642 ATGAAAAAGCTTAGCAAAGCAAGGACGAGAAATAGCTTAGCAAAGCTATGAGAGA
1 ATGAAAAAGCTTAGAAAAGCAAGAACGAGAAATAGCTTAGCAAAGCTATGAGAGA
14697 A
1 A
14698 AAGGTGAAGC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.48, C:0.12, G:0.24, T:0.16
Consensus pattern (55 bp):
ATGAAAAAGCTTAGAAAAGCAAGAACGAGAAATAGCTTAGCAAAGCTATGAGAGA
Found at i:14680 original size:26 final size:25
Alignment explanation
Indices: 14595--14698 Score: 84
Period size: 26 Copynumber: 3.9 Consensus size: 25
14585 ATATGAAAAG
* * *
14595 GCTTAGAAAAGCCAGAATGAGAAATA
1 GCTTAGCAAAGCAAGGA-GAGAAATA
*
14621 GCTTAGCAAAGCTATTA-GAGAATGAAAAA
1 GCTTAGCAAAGC-A--AGGAG-A-GAAATA
14650 GCTTAGCAAAGCAAGGACGAGAAATA
1 GCTTAGCAAAGCAAGGA-GAGAAATA
* *
14676 GCTTAGCAAAGCTATGAGAGAAA
1 GCTTAGCAAAGCAAGGAGAGAAA
14699 AGGTGAAGCT
Statistics
Matches: 64, Mismatches: 7, Indels: 15
0.74 0.08 0.17
Matches are distributed among these distances:
25 6 0.09
26 32 0.50
27 4 0.06
28 4 0.06
29 18 0.28
ACGTcount: A:0.47, C:0.12, G:0.24, T:0.16
Consensus pattern (25 bp):
GCTTAGCAAAGCAAGGAGAGAAATA
Found at i:17855 original size:12 final size:13
Alignment explanation
Indices: 17824--17849 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17814 AGAAGTGAGC
17824 AATTATTTAAAAA
1 AATTATTTAAAAA
17837 AATTATTTAAAAA
1 AATTATTTAAAAA
17850 TTTATTGGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AATTATTTAAAAA
Found at i:18252 original size:14 final size:14
Alignment explanation
Indices: 18233--18259 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
18223 TTTCAAAAAA
18233 AATTCAATTCAATC
1 AATTCAATTCAATC
18247 AATTCAATTCAAT
1 AATTCAATTCAAT
18260 TATTCTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.37
Consensus pattern (14 bp):
AATTCAATTCAATC
Found at i:26638 original size:471 final size:470
Alignment explanation
Indices: 25507--26921 Score: 2273
Period size: 471 Copynumber: 3.0 Consensus size: 470
25497 AATTATTTCT
25507 AAATAGATAAAGTAAAATTATATTTTTTTCGGGTCGGGTCGGGTATTTTTACCCTAAACCCGAAC
1 AAATAGATAAAGTAAAATTATATTTTTTTCGGGTCGGGTCGGGTATTTTTACCCTAAACCCGAAC
* *
25572 CGACCCGAACATTACACTTAAAAAAATCCGACCCGACCCCGAATTATTTTAA-AATAACCCGAGC
66 CGACCCGAACATTACACTTAAAAAAATCCGACCCGACCCTGAATTATTTTAAGAA-AACTCGAGC
* * * * * *
25636 CGATCGAGTC-GGATCAAATCGAAACCCGTCGAATTCGAGTCTCATACCCATCCTTATGAATACA
130 CGATCGGGTCAGG-TCAAATCGAAACCCATCGAATTCGAATCTCATGCCCATCTTTATGAATACC
* * * *
25700 TATTTTGATATCTTAATAAAGTAAAAGGCATAAGGAAAAATTATCACTTTTTTTCAGAAATAGTT
194 TATTTTGATATCTTGATAAAGTCAAAGGCATAAGGAAAAATTAT--CGTTTTTTCATAAATAGTT
25765 ATTTTCTTCTCTATACTTCTTTTTAATATTTTAGTTGTTAATATTTTATTTTTTTTTGTCAAAAT
257 ATTTTCTTCTCTATACTTCTTTTTAATATTTTAGTTGTTAATATTTTA---TTTTTTGTCAAAAT
*
25830 AATCCGTATTGAATGAAAATTATTACTAATTGTCAATATATGTTACTGACGTGTTATTTTCATAT
319 AATCCTTATTGAATGAAAATTATTACTAATTGTCAATATATGTTACTGACGTGTTATTTTCATAT
25895 GTGTTCAATTGTTAATGTAAAATATATTATGTCATTATTTTAGTGACGCGATAATTTATGATGAT
384 GTGTTCAATTGTTAATGTAAAATATATTATGTCATTATTTTAGTGACGCGATAATTTATGATGAT
*
25960 ATAACACATGTCATATCATTGAGTA
449 ATAACACATGTC--A-CATAGAGTA
* * *
25985 AAATATATAAAGTAAAATTATATTTTTTCGGGTCAGGTCGGGTCAGGTATTTTTACCCTAAACCC
1 AAATAGATAAAGTAAAATTATATTTTTT----TCGGGTCGGGTCGGGTATTTTTACCCTAAACCC
* * *
26050 GAATCGACCCGAACATTACACTTAAAAAAATCCGACCCGACCCTAAATTATTTTGAGAAAACTCG
62 GAACCGACCCGAACATTACACTTAAAAAAATCCGACCCGACCCTGAATTATTTTAAGAAAACTCG
* * *
26115 AGCCGATCGGGTAAGATCAAATCGAAACCTATCGAATTCGAATC-CTATGCCCATCTTTATGAAT
127 AGCCGATCGGGTCAGGTCAAATCGAAACCCATCGAATTCGAATCTC-ATGCCCATCTTTATGAAT
* *
26179 ACCTATTTTGATATCTTGATAAAGTCAAAGGTAAAAGGAAAAATTATCGTTTTTTCATAAATAGT
191 ACCTATTTTGATATCTTGATAAAGTCAAAGGCATAAGGAAAAATTATCGTTTTTTCATAAATAGT
26244 TATTTTCTTCTCTATACTTCTTTTTAATATTTTAGTTGTTAATATTTTATTTTTTGTCAAAATAA
256 TATTTTCTTCTCTATACTTCTTTTTAATATTTTAGTTGTTAATATTTTATTTTTTGTCAAAATAA
*
26309 TCCTTATTGAATGAAAATTATTACTAATTGTCAATATATATTACTGACGTGTTATTTTCATATGT
321 TCCTTATTGAATGAAAATTATTACTAATTGTCAATATATGTTACTGACGTGTTATTTTCATATGT
26374 GTTCAATTGTTAATGTAAAAATATATTATGTCATTATTTTAGTGACGCGATAATTTATGATGATA
386 GTTCAATTGTTAATGT-AAAATATATTATGTCATTATTTTAGTGACGCGATAATTTATGATGATA
26439 TAACACATGTCACATAGAGTA
450 TAACACATGTCACATAGAGTA
* *
26460 AAATAGATAAAGTAAAATTATATTTTTTTCGGGTCGAGTCGGGTATTTTTACCCTAAATCCGAAC
1 AAATAGATAAAGTAAAATTATATTTTTTTCGGGTCGGGTCGGGTATTTTTACCCTAAACCCGAAC
* *
26525 CGACCCGAACATTACATTTAAAAAAATCCGACCTGACCCTGAATTATTTTAAGAAAACTCGAGCC
66 CGACCCGAACATTACACTTAAAAAAATCCGACCCGACCCTGAATTATTTTAAGAAAACTCGAGCC
* * *
26590 TATCGGGTCAGGTCGAATCAAAACCCATCGAATTCGAATCTCATGCCCATCTTTATGAATACCTA
131 GATCGGGTCAGGTCAAATCGAAACCCATCGAATTCGAATCTCATGCCCATCTTTATGAATACCTA
* * * *
26655 TTTTGATGTCTTGATAAAATCAAAGGCATAAGGAAAAAATATTGTTTTTTCATAAATAGTTATTT
196 TTTTGATATCTTGATAAAGTCAAAGGCATAAGGAAAAATTATCGTTTTTTCATAAATAGTTATTT
*
26720 TCTTTTCTATACTTCTTTTTAATATTTTAGTTGTTAATATTTTATTTTTTGTCAAAATAATCCTT
261 TCTTCTCTATACTTCTTTTTAATATTTTAGTTGTTAATATTTTATTTTTTGTCAAAATAATCCTT
* * *
26785 ATTGAATGAAAATTATTACTAATTGTCAATATATGTTATTGAAGTGTTATTTTTATATGTGTTCA
326 ATTGAATGAAAATTATTACTAATTGTCAATATATGTTACTGACGTGTTATTTTCATATGTGTTCA
*
26850 ATTGCTAATGTAAAATATATTA--TCATTATTTTAGTGACGCGATAATTTATGATGATATAACAC
391 ATTGTTAATGTAAAATATATTATGTCATTATTTTAGTGACGCGATAATTTATGATGATATAACAC
26913 ATGTCACAT
456 ATGTCACAT
26922 CATTGAGTGA
Statistics
Matches: 874, Mismatches: 54, Indels: 28
0.91 0.06 0.03
Matches are distributed among these distances:
468 50 0.06
470 11 0.01
471 344 0.39
472 1 0.00
475 35 0.04
476 1 0.00
477 95 0.11
478 86 0.10
480 65 0.07
481 1 0.00
482 182 0.21
483 3 0.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (470 bp):
AAATAGATAAAGTAAAATTATATTTTTTTCGGGTCGGGTCGGGTATTTTTACCCTAAACCCGAAC
CGACCCGAACATTACACTTAAAAAAATCCGACCCGACCCTGAATTATTTTAAGAAAACTCGAGCC
GATCGGGTCAGGTCAAATCGAAACCCATCGAATTCGAATCTCATGCCCATCTTTATGAATACCTA
TTTTGATATCTTGATAAAGTCAAAGGCATAAGGAAAAATTATCGTTTTTTCATAAATAGTTATTT
TCTTCTCTATACTTCTTTTTAATATTTTAGTTGTTAATATTTTATTTTTTGTCAAAATAATCCTT
ATTGAATGAAAATTATTACTAATTGTCAATATATGTTACTGACGTGTTATTTTCATATGTGTTCA
ATTGTTAATGTAAAATATATTATGTCATTATTTTAGTGACGCGATAATTTATGATGATATAACAC
ATGTCACATAGAGTA
Found at i:29438 original size:11 final size:11
Alignment explanation
Indices: 29424--29448 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
29414 TCTATCTCAT
29424 ATAAACATAAA
1 ATAAACATAAA
29435 ATAAACATAAA
1 ATAAACATAAA
29446 ATA
1 ATA
29449 TTTTTTAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (11 bp):
ATAAACATAAA
Found at i:44739 original size:19 final size:21
Alignment explanation
Indices: 44717--44767 Score: 52
Period size: 24 Copynumber: 2.4 Consensus size: 21
44707 TTTAATAAAG
44717 TTTTTCTT-G-TTTTATTTTA
1 TTTTTCTTAGTTTTTATTTTA
*
44736 TTTTCCTTTATAGTTTTTATTTTA
1 TTTT--TCT-TAGTTTTTATTTTA
44760 TTTTTCTT
1 TTTTTCTT
44768 TCAAAACGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
19 4 0.16
21 3 0.12
22 3 0.12
23 1 0.04
24 14 0.56
ACGTcount: A:0.12, C:0.08, G:0.04, T:0.76
Consensus pattern (21 bp):
TTTTTCTTAGTTTTTATTTTA
Found at i:47581 original size:36 final size:36
Alignment explanation
Indices: 47511--47651 Score: 207
Period size: 35 Copynumber: 4.0 Consensus size: 36
47501 AAAGATGAAC
*
47511 ACTTGAATCGAAAGTG-CGACG-TCTCCTTCCGTTCG
1 ACTTGAATCGAAAGTGTCGATGCT-TCCTTCCGTTCG
*
47546 ACTTGAATCGAAAGTGTCGATGCTTCCTTTCGTTCG
1 ACTTGAATCGAAAGTGTCGATGCTTCCTTCCGTTCG
*
47582 ACTTGAATCGAAAGTGCCGATGCTTCCTTCCGTTC-
1 ACTTGAATCGAAAGTGTCGATGCTTCCTTCCGTTCG
* *
47617 ACTTGAATCGAAAGTGTCAATGCTTCCTTTCGTTC
1 ACTTGAATCGAAAGTGTCGATGCTTCCTTCCGTTC
47652 TTCTTATTCA
Statistics
Matches: 97, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
35 48 0.49
36 48 0.49
37 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.33
Consensus pattern (36 bp):
ACTTGAATCGAAAGTGTCGATGCTTCCTTCCGTTCG
Found at i:47627 original size:71 final size:71
Alignment explanation
Indices: 47511--47651 Score: 232
Period size: 71 Copynumber: 2.0 Consensus size: 71
47501 AAAGATGAAC
*
47511 ACTTGAATCGAAAGTGCGACGTCTCCTTCCGTTCGACTTGAATCGAAAGTGTCGATGCTTCCTTT
1 ACTTGAATCGAAAGTGCGACGTCTCCTTCCGTTCGACTTGAATCGAAAGTGTCAATGCTTCCTTT
47576 CGTTCG
66 CGTTCG
*
47582 ACTTGAATCGAAAGTGCCGATG-CTTCCTTCCGTTC-ACTTGAATCGAAAGTGTCAATGCTTCCT
1 ACTTGAATCGAAAGTG-CGACGTC-TCCTTCCGTTCGACTTGAATCGAAAGTGTCAATGCTTCCT
47645 TTCGTTC
64 TTCGTTC
47652 TTCTTATTCA
Statistics
Matches: 66, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
71 51 0.77
72 15 0.23
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.33
Consensus pattern (71 bp):
ACTTGAATCGAAAGTGCGACGTCTCCTTCCGTTCGACTTGAATCGAAAGTGTCAATGCTTCCTTT
CGTTCG
Found at i:54513 original size:15 final size:14
Alignment explanation
Indices: 54491--54521 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
54481 ATTTTTGAAT
54491 TTATTATTTTCTTA
1 TTATTATTTTCTTA
54505 TTATATATTTTCTTA
1 TTAT-TATTTTCTTA
54520 TT
1 TT
54522 TCTTTTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (14 bp):
TTATTATTTTCTTA
Found at i:67628 original size:42 final size:41
Alignment explanation
Indices: 67566--67667 Score: 123
Period size: 42 Copynumber: 2.5 Consensus size: 41
67556 ATAATTTAAG
* *
67566 TCCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGATGAAA
1 TCCTTCGGGCCATCAATAAGTCTTTAGAGCAAGATGAT-AAA
* ** *
67608 TCCTTCGGGTCATCTGTAAGTCTTTAGAGCAAGATGATAAG
1 TCCTTCGGGCCATCAATAAGTCTTTAGAGCAAGATGATAAA
* *
67649 TCATTCGGGCCATCCATAA
1 TCCTTCGGGCCATCAATAA
67668 AGCCTTCGGG
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
41 17 0.34
42 33 0.66
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (41 bp):
TCCTTCGGGCCATCAATAAGTCTTTAGAGCAAGATGATAAA
Found at i:67844 original size:42 final size:42
Alignment explanation
Indices: 67782--67874 Score: 159
Period size: 42 Copynumber: 2.2 Consensus size: 42
67772 ACTTAGTAAG
* *
67782 TCCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGCTTAAA
1 TCCTTCAGGCCATCAATAAGTCTTTCGAGCATGATGATTAAA
*
67824 TCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAA
1 TCCTTCAGGCCATCAATAAGTCTTTCGAGCATGATGATTAAA
67866 TCCTTCAGG
1 TCCTTCAGG
67875 TAATTTGTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (42 bp):
TCCTTCAGGCCATCAATAAGTCTTTCGAGCATGATGATTAAA
Found at i:67931 original size:13 final size:13
Alignment explanation
Indices: 67913--67937 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67903 TGAAGCAAAT
67913 CCATCAGTAAGTG
1 CCATCAGTAAGTG
67926 CCATCAGTAAGT
1 CCATCAGTAAGT
67938 CTTTCGAGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (13 bp):
CCATCAGTAAGTG
Found at i:67991 original size:93 final size:93
Alignment explanation
Indices: 67832--68017 Score: 336
Period size: 93 Copynumber: 2.0 Consensus size: 93
67822 AATCCTTCAG
*
67832 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTAATTTGTAAGCCTTCACTGAA
1 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTAATTTGTAAGCCTTCACCGAA
*
67897 GAGTAGTGAAGCAAATCCATCAGTAAGT
66 GAGTAGTGAAGCAAACCCATCAGTAAGT
* *
67925 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTAATTTTTAAGCCTTCACCGAA
1 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTAATTTGTAAGCCTTCACCGAA
67990 GAGTAGTGAAGCAAACCCATCAGTAAGT
66 GAGTAGTGAAGCAAACCCATCAGTAAGT
68018 CTTTCGAGCA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 89 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (93 bp):
GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTAATTTGTAAGCCTTCACCGAA
GAGTAGTGAAGCAAACCCATCAGTAAGT
Found at i:68124 original size:76 final size:80
Alignment explanation
Indices: 67926--68124 Score: 275
Period size: 80 Copynumber: 2.5 Consensus size: 80
67916 TCAGTAAGTG
* **
67926 CCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTAATTTTTAAGCCTTCACCGAAG
1 CCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTAACTGGTAAGCCTTCACCGAAG
67991 AGTAGTGAAGCAAAC
66 AGTAGTGAAGCAAAC
*
68006 CCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTAACTGGTAAGCCTTCA-CGGA-
1 CCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTAACTGGTAAGCCTTCACCGAAG
*
68069 AG-AGT-AAGCAAAT
66 AGTAGTGAAGCAAAC
* *
68082 TCATCAGTAAGTCTTTCGAGCAGGATG-TTGAAA-CCTTTCGGGT
1 CCATCAGTAAGTCTTTCGAGCATGATGATT-AAATCC-TTCGGGT
68125 CATCAGTAAG
Statistics
Matches: 110, Mismatches: 7, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
75 4 0.04
76 42 0.38
77 3 0.03
78 2 0.02
79 3 0.03
80 56 0.51
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29
Consensus pattern (80 bp):
CCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTAACTGGTAAGCCTTCACCGAAG
AGTAGTGAAGCAAAC
Found at i:68141 original size:42 final size:41
Alignment explanation
Indices: 68082--68194 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 41
68072 GTAAGCAAAT
68082 TCATCAGTAAGTCTTTCGAGCAGGATGTTGAAA-CCTTTCGGG
1 TCATCAGTAAGTCTTTCGAGCAGGATGTT-AAATCC-TTCGGG
*
68124 TCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGG
1 TCATCAGTAAGTCTTTCGAGCAGGATG-TTAAATCCTTCGGG
* * *
68166 TCATCCA-TAAGTCCTTCGGGTAGGATGTT
1 TCAT-CAGTAAGTCTTTCGAGCAGGATGTT
68195 TTCACACCAA
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
41 2 0.03
42 55 0.87
43 6 0.10
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (41 bp):
TCATCAGTAAGTCTTTCGAGCAGGATGTTAAATCCTTCGGG
Found at i:68670 original size:53 final size:53
Alignment explanation
Indices: 68607--68962 Score: 495
Period size: 53 Copynumber: 6.7 Consensus size: 53
68597 ATCAAACCAT
*
68607 AAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAGGCAG
1 AAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAGCAG
* *
68660 AAGATTGTTCGAGTTTTACTCCCTGAAGCAAGAGGGAGCAAACCCGT-AGACAG
1 AAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAG-CAG
* * * *
68713 AAGACTGTTTGAGTTCTACTCCTTGAAGCAAGAGGGAGCGAACCCGCT-GGTC-G
1 AAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCG-TAAG-CAG
* *** *
68766 AAGATTGTTCGAGTTCTACTCCATGAAGCAAGAGGGAATAAACCCGTAAGTAG
1 AAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAGCAG
*
68819 AAGATTGTTCGAGTTCTACTCCTTGAAGCAAGAGGGAGCGAACCCGTAAGCAG
1 AAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAGCAG
* *
68872 AAGATTATTCGAGTTCTACTCCTTGAAGCAAGAGGGAGCGAACCCGTAAGCAG
1 AAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAGCAG
* * *
68925 AAGATTATTCGAATTCTACT-CCTGAAGCAATAGGGAGC
1 AAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGC
68963 AGACACGTTT
Statistics
Matches: 272, Mismatches: 27, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
52 18 0.07
53 251 0.92
54 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (53 bp):
AAGATTGTTCGAGTTCTACTCCCTGAAGCAAGAGGGAGCGAACCCGTAAGCAG
Found at i:75288 original size:240 final size:234
Alignment explanation
Indices: 74856--75328 Score: 626
Period size: 240 Copynumber: 2.0 Consensus size: 234
74846 AGTCAACATC
* *
74856 AGCAACCACAGAAACCTATTCCATTATTGAGGAGAATTCAACTGATACTGAGTCCTCAAACCTGC
1 AGCAACCACAGAAACATATTCCAGTATTGAGGAGAATTCAACTGATACTGAGTCCTCAAACCTGC
* * *
74921 TAAATATTCCTACAATGGATGACTTCCCAGAACCATTGAGTTGCATCAATACTTCACCTGAAAAC
66 TAAACATTCCTACAATGGATGACTTCCCAGAACCATTGACTTACATCAATACTTCACCTGAAAAC
* *
74986 AGTTATAGCATGAGGGAAACTTTTGTTTCATCTGAAAACTATTGGGATATACCGAGTTTTATGGA
131 AGTTATAGCATGAGAGAAACTTTTGTTTCATCTGAAAACTATTGGGAGATACCGAGTTTTATGGA
*
75051 GCAGCCATTAATAGCACAAGGTTTCGATTGTGAAGCATT
196 GCAGCCATTAATAGCACAAGGCTTCGATTGTGAAGCATT
* * * * *
75090 AGCAACCACAGAAA-ATAATTCCAGTATTGAGGAGAATTTACCTGAT-GTCGAGTCCTCAAGCTT
1 AGCAACCACAGAAACAT-ATTCCAGTATTGAGGAGAATTCAACTGATACT-GAGTCCTCAAACCT
* * ** ** *
75153 GCTTAACATTCCTACAATGGCTGGTTTCCCAGAACCATTGACTTACAGTGGTACTTTTACTTCAT
64 GCTAAACATTCCTACAATGGATGACTTCCCAGAACCATTGACTTACA----T-C-AATACTTCAC
* * *
75218 CTGAAAACAGTTATAGCATGAGAGACACTTTTGTTTCATCTGAGAACTATTGGGAGATACTGAGT
123 CTGAAAACAGTTATAGCATGAGAGAAACTTTTGTTTCATCTGAAAACTATTGGGAGATACCGAGT
* * *
75283 TTTATGGAGCAGCCATTAATTGCAGAAGGCTTCGATTGTGTAGCAT
188 TTTATGGAGCAGCCATTAATAGCACAAGGCTTCGATTGTGAAGCAT
75329 CATCACCAAA
Statistics
Matches: 205, Mismatches: 26, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
233 2 0.01
234 92 0.45
238 1 0.00
239 1 0.00
240 109 0.53
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (234 bp):
AGCAACCACAGAAACATATTCCAGTATTGAGGAGAATTCAACTGATACTGAGTCCTCAAACCTGC
TAAACATTCCTACAATGGATGACTTCCCAGAACCATTGACTTACATCAATACTTCACCTGAAAAC
AGTTATAGCATGAGAGAAACTTTTGTTTCATCTGAAAACTATTGGGAGATACCGAGTTTTATGGA
GCAGCCATTAATAGCACAAGGCTTCGATTGTGAAGCATT
Found at i:81406 original size:3 final size:3
Alignment explanation
Indices: 81391--81501 Score: 120
Period size: 3 Copynumber: 37.7 Consensus size: 3
81381 TATGTAACAT
* *
81391 TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* * * * *
81437 TTA TAA T-A TAA TAT TTA TAA TAA TAA TAG TTA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
81484 T-A TAA TAT TAA T-A TAA TA
1 TAA TAA TAA TAA TAA TAA TA
81502 TTTATTACCC
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
2 6 0.07
3 82 0.91
4 2 0.02
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:81847 original size:106 final size:106
Alignment explanation
Indices: 81691--82053 Score: 382
Period size: 106 Copynumber: 3.5 Consensus size: 106
81681 CTCTCTCTTG
* * * * * * * * *
81691 CTTCAGGGAGTGTAAAACTCAAACAATCTTCATA-AAACGGGTCTGTTCCCTATTCTTTCAGAGA
1 CTTCAGAGAGTATAAGACTCGAACAACCTTCA-ACAAACGTGTCCGCTCCCTATTCCTTCAGAGA
* *
81755 GTATAGGACTCGATCTTCAACAAACGTGT-TCGTTCTCTATTC
65 GTATAGGACTCGATCTTCAACAAACGTGTAT-GCTCCCTATTC
* * * *
81797 CTTCAGAGAGTATAGGACTTGAACAACCTTCAACAAACGTGTCCGCTCCCTATTCCTTCAAAAAG
1 CTTCAGAGAGTATAAGACTCGAACAACCTTCAACAAACGTGTCCGCTCCCTATTCCTTCAGAGAG
* *
81862 TATGGGACTCAATCTTCAACAAACGTGTATGCTCCCTATTC
66 TATAGGACTCGATCTTCAACAAACGTGTATGCTCCCTATTC
* * * * *
81903 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTCTGTTCCCTATTCCTTCAGTGAG
1 CTTCAGAGAGTATAAGACTCGAACAACCTTCAACAAACGTGTCCGCTCCCTATTCCTTCAGAGAG
* * *
81968 TATAAGACTCG------AACAATCGTGTATGCTCCCTATTT
66 TATAGGACTCGATCTTCAACAAACGTGTATGCTCCCTATTC
* * * * *
82003 CTTCAAAGAGTATAAGACTCGAACAATCTTCCACAAACGGGTTCGCTCCCT
1 CTTCAGAGAGTATAAGACTCGAACAACCTTCAACAAACGTGTCCGCTCCCT
82054 CTTTGTTTTA
Statistics
Matches: 217, Mismatches: 38, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
100 66 0.30
105 1 0.00
106 149 0.69
107 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (106 bp):
CTTCAGAGAGTATAAGACTCGAACAACCTTCAACAAACGTGTCCGCTCCCTATTCCTTCAGAGAG
TATAGGACTCGATCTTCAACAAACGTGTATGCTCCCTATTC
Found at i:81850 original size:55 final size:55
Alignment explanation
Indices: 81712--81985 Score: 278
Period size: 55 Copynumber: 5.1 Consensus size: 55
81702 GTAAAACTCA
* * * *
81712 AACAATCTTCATA-AAACGGGTCTGTTCCCTATTCTTTCAGAGAGTATAGGAC-T-
1 AACAATCTTCA-ACAAACGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTTG
* * * *
81765 --CGATCTTCAACAAACGTGTTCGTTCTCTATTCCTTCAGAGAGTATAGGACTTG
1 AACAATCTTCAACAAACGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTTG
* * * *
81818 AACAACCTTCAACAAACGTGTCCGCTCCCTATTCCTTCAAAAAGTATGGGAC-T-
1 AACAATCTTCAACAAACGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTTG
** * *
81871 --CAATCTTCAACAAACGTGTATGCTCCCTATTCCTTCAGAGAGTATAAGACTCG
1 AACAATCTTCAACAAACGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTTG
* * * * * *
81924 AACAATCTTCAACAATCGTGTCTGTTCCCTATTCCTTCAGTGAGTATAAGACTCG
1 AACAATCTTCAACAAACGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTTG
81979 AACAATC
1 AACAATC
81986 GTGTATGCTC
Statistics
Matches: 186, Mismatches: 26, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
50 1 0.01
51 85 0.46
52 1 0.01
54 1 0.01
55 98 0.53
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (55 bp):
AACAATCTTCAACAAACGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTTG
Found at i:81998 original size:45 final size:45
Alignment explanation
Indices: 81934--82030 Score: 149
Period size: 45 Copynumber: 2.2 Consensus size: 45
81924 AACAATCTTC
* * **
81934 AACAATCGTGTCTGTTCCCTATTCCTTCAGTGAGTATAAGACTCG
1 AACAATCGTGTATGCTCCCTATTCCTTCAAAGAGTATAAGACTCG
*
81979 AACAATCGTGTATGCTCCCTATTTCTTCAAAGAGTATAAGACTCG
1 AACAATCGTGTATGCTCCCTATTCCTTCAAAGAGTATAAGACTCG
82024 AACAATC
1 AACAATC
82031 TTCCACAAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (45 bp):
AACAATCGTGTATGCTCCCTATTCCTTCAAAGAGTATAAGACTCG
Found at i:82079 original size:56 final size:56
Alignment explanation
Indices: 82011--82972 Score: 1112
Period size: 56 Copynumber: 17.4 Consensus size: 56
82001 TTCTTCAAAG
* ** * *
82011 AGTATA-AGACTCGAACAATCTTCCACAAACGGGTTCGCTCCCTCTTTGTTTTAGGA
1 AGTATAGA-ACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
* * * * *
82067 AGTATAGAACTCGAATAATGTTCTACAAATGGGTTCACTCTCTCTTTCTTTCAGGA
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
* * * *
82123 AGTATATAACTCGAATAATCTTCTGCAAATGGGTTCGCTTCCTCTTTCTTTCAAGA
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
*
82179 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGTTCCCTCTTTCTTTCAGGA
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
82235 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
82291 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
* * * *
82347 AGTATAGAACTCGAATAATCTTCTGAAAACGGGTTCACTCCCTCTTTCTCT-AGGG
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
* * * * ** * * *
82402 AGGATGGAACTCGAA-CATCTTCTTCTTACGGGTCCGCTCCCTCTTTCTCT-AGGG
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
* * *
82456 AGTATAAAACTCGAATAATGTTCTGCAAACGGGTTCGCTCTCTCTTTCTTTCAGGA
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
* *
82512 AGTATAGAACTCGAATAATCTTCTGCAAACGAGTTCGCTCCCTATTTCTTTCAGGA
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
82568 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
** *
82624 AGTATAGAACTCGAATAATCTTCTATAAACAGGTTCGCTCCCTCTTTCTTTCAGGA
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
* * *
82680 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGTTCCCTCTTTCTCT-AGGG
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
* * * ** * * *
82735 AGTATGGAACTCGAA-CATCTTCTTCTTATGGGTTCGCTCCCTCTTTCTCT-AGGG
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
* * * * * * * *
82789 AGTATGGAACTAGAA-CATCTTCAG-AAGACGAGTTTGCTCCCTCTTTCTCT-AGGG
1 AGTATAGAACTCGAATAATCTTCTGCAA-ACGGGTTCGCTCCCTCTTTCTTTCAGGA
* * * * ** * * *
82843 AGAATGGAACTCGAA-CATCTTCTTCTTACGGGTCCGCTCCCTCTTTCTCT-AGGG
1 AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
* * ** * * * *
82897 AGTAT-GAAACTCGAA-CATCTTCTTCTTACGGGTTCACCCCCTCTTT-TCT-AGGG
1 AGTATAG-AACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
* *
82950 AGTATGGAACTCGAA-CATCTTCT
1 AGTATAGAACTCGAATAATCTTCT
82973 CTTGCTTCAC
Statistics
Matches: 809, Mismatches: 90, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
53 29 0.04
54 207 0.26
55 60 0.07
56 512 0.63
57 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (56 bp):
AGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGA
Found at i:82736 original size:333 final size:333
Alignment explanation
Indices: 82108--82793 Score: 1185
Period size: 333 Copynumber: 2.1 Consensus size: 333
82098 GGTTCACTCT
* * * *
82108 CTCTTTCTTTCAGGAAGTATATAACTCGAATAATCTTCTGCAAATGGGTTCGCTTCCTCTTTCTT
1 CTCTTTCTCT-AGGGAGTATAAAACTCGAATAATCTTCTGCAAACGGGTTCGCTTCCTCTTTCTT
* * *
82173 TCAAGAAGTATAGAACTCGAATAATCTTCTGCAAACGGGTTCGTTCCCTCTTTCTTTCAGGAAGT
65 TCAAGAAGTATAGAACTCGAATAATCTTCTGCAAACGAGTTCGCTCCCTATTTCTTTCAGGAAGT
82238 ATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGAAGTATAGAACTC
130 ATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGAAGTATAGAACTC
* *
82303 GAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCT
195 GAATAATCTTCTACAAACAGGTTCGCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCT
82368 TCTGAAAACGGGTTCACTCCCTCTTTCTCTAGGGAGGATGGAACTCGAACATCTTCTTCTTACGG
260 TCTGAAAACGGGTTCACTCCCTCTTTCTCTAGGGAGGATGGAACTCGAACATCTTCTTCTTACGG
82433 GTCCGCTCC
325 GTCCGCTCC
*
82442 CTCTTTCTCTAGGGAGTATAAAACTCGAATAATGTTCTGCAAACGGGTTCGC-TCTCTCTTTCTT
1 CTCTTTCTCTAGGGAGTATAAAACTCGAATAATCTTCTGCAAACGGGTTCGCTTC-CTCTTTCTT
*
82506 TCAGGAAGTATAGAACTCGAATAATCTTCTGCAAACGAGTTCGCTCCCTATTTCTTTCAGGAAGT
65 TCAAGAAGTATAGAACTCGAATAATCTTCTGCAAACGAGTTCGCTCCCTATTTCTTTCAGGAAGT
82571 ATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGAAGTATAGAACTC
130 ATAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGAAGTATAGAACTC
*
82636 GAATAATCTTCTATAAACAGGTTCGCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCT
195 GAATAATCTTCTACAAACAGGTTCGCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCT
* ** * *
82701 TCTGCAAACGGGTTCGTTCCCTCTTTCTCTAGGGAGTATGGAACTCGAACATCTTCTTCTTATGG
260 TCTGAAAACGGGTTCACTCCCTCTTTCTCTAGGGAGGATGGAACTCGAACATCTTCTTCTTACGG
*
82766 GTTCGCTCC
325 GTCCGCTCC
82775 CTCTTTCTCTAGGGAGTAT
1 CTCTTTCTCTAGGGAGTAT
82794 GGAACTAGAA
Statistics
Matches: 333, Mismatches: 18, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
332 2 0.01
333 322 0.97
334 9 0.03
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (333 bp):
CTCTTTCTCTAGGGAGTATAAAACTCGAATAATCTTCTGCAAACGGGTTCGCTTCCTCTTTCTTT
CAAGAAGTATAGAACTCGAATAATCTTCTGCAAACGAGTTCGCTCCCTATTTCTTTCAGGAAGTA
TAGAACTCGAATAATCTTCTGCAAACGGGTTCGCTCCCTCTTTCTTTCAGGAAGTATAGAACTCG
AATAATCTTCTACAAACAGGTTCGCTCCCTCTTTCTTTCAGGAAGTATAGAACTCGAATAATCTT
CTGAAAACGGGTTCACTCCCTCTTTCTCTAGGGAGGATGGAACTCGAACATCTTCTTCTTACGGG
TCCGCTCC
Found at i:83410 original size:37 final size:37
Alignment explanation
Indices: 83353--83511 Score: 180
Period size: 37 Copynumber: 4.3 Consensus size: 37
83343 CTGATAATCT
* *
83353 GATGG-TTTGCTCCAAC-ACTCTTCTGAGAAGGCTTAA
1 GATGGATTTGCTTC-ACTACTCTTCTGTGAAGGCTTAA
* * *
83389 AATGGATTTGCTTCACTACTCTTCGGTGAAGACTTAA
1 GATGGATTTGCTTCACTACTCTTCTGTGAAGGCTTAA
* *
83426 GATGG-TTTGCTTCACTACTCTTTTGTGAAGGATTAA
1 GATGGATTTGCTTCACTACTCTTCTGTGAAGGCTTAA
* * *
83462 GATGGATTTGTTTCACCACTCTTCAGTGAAGGCTTAA
1 GATGGATTTGCTTCACTACTCTTCTGTGAAGGCTTAA
*
83499 GATTGACTTTGCT
1 GATGGA-TTTGCT
83512 CCAATCTCAT
Statistics
Matches: 102, Mismatches: 17, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
36 38 0.37
37 59 0.58
38 5 0.05
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.36
Consensus pattern (37 bp):
GATGGATTTGCTTCACTACTCTTCTGTGAAGGCTTAA
Found at i:83477 original size:73 final size:73
Alignment explanation
Indices: 83353--83515 Score: 202
Period size: 73 Copynumber: 2.2 Consensus size: 73
83343 CTGATAATCT
* * *
83353 GATGGTTTGCTCCAACACTCTTCTGAGAAGGCTTAAAATGGATTTGCTTCACTACTCTTCGGTGA
1 GATGGTTTGCTCCAACACTCTTCTGAGAAGGATTAAAATGGATTTGCTTCACCACTCTTCAGTGA
83418 AGACTTAA
66 AGACTTAA
* * * * *
83426 GATGGTTTGCTTC-ACTACTCTTTTGTGAAGGATTAAGATGGATTTGTTTCACCACTCTTCAGTG
1 GATGGTTTGCTCCAAC-ACTCTTCTGAGAAGGATTAAAATGGATTTGCTTCACCACTCTTCAGTG
*
83490 AAGGCTTAA
65 AAGACTTAA
*
83499 GATTGACTTTGCTCCAA
1 GA-TG-GTTTGCTCCAA
83516 TCTCATATGT
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
72 2 0.03
73 63 0.84
74 2 0.03
75 7 0.09
76 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.36
Consensus pattern (73 bp):
GATGGTTTGCTCCAACACTCTTCTGAGAAGGATTAAAATGGATTTGCTTCACCACTCTTCAGTGA
AGACTTAA
Found at i:86319 original size:25 final size:24
Alignment explanation
Indices: 86261--86319 Score: 57
Period size: 25 Copynumber: 2.3 Consensus size: 24
86251 GTTTTCTTTC
*
86261 TTTCTTTTTTTTTCATTTTTTCAT
1 TTTCTTTTTTTCTCATTTTTTCAT
*
86285 TTCCAATTTTTTTCTC-TTTTTTCATCT
1 TTTC--TTTTTTTCTCATTTTTTCA--T
86312 TTTCTTTT
1 TTTCTTTT
86320 CTTTTTCTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
24 3 0.11
25 12 0.43
26 9 0.32
27 4 0.14
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTCTTTTTTTCTCATTTTTTCAT
Found at i:89093 original size:55 final size:56
Alignment explanation
Indices: 89029--89170 Score: 182
Period size: 55 Copynumber: 2.6 Consensus size: 56
89019 CAACTTCAAA
* * * * *
89029 CTTCATTCATCAGATGTCTTTCTTCATAG-ATTGGTCTTCAATCAGTTTCAGATTT
1 CTTCATTCATCGGATGTCCTTCTTCATAGAATCGGTCTTCAATCAGGTTCAAATTT
* *
89084 CTTCATTCATCGGATGTCCATCTTCAT-GAATCGTTCTTCAATCAGGTTCAAATTT
1 CTTCATTCATCGGATGTCCTTCTTCATAGAATCGGTCTTCAATCAGGTTCAAATTT
* *
89139 CTTAATTCATCGGATGCCCTTCTTCATA-AATC
1 CTTCATTCATCGGATGTCCTTCTTCATAGAATC
89171 ACTTGAATGT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
54 1 0.01
55 74 0.99
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (56 bp):
CTTCATTCATCGGATGTCCTTCTTCATAGAATCGGTCTTCAATCAGGTTCAAATTT
Found at i:96909 original size:23 final size:21
Alignment explanation
Indices: 96855--96937 Score: 71
Period size: 21 Copynumber: 3.9 Consensus size: 21
96845 TTTTGGTGTA
96855 GAGGGAATCGA-TCCCCCCAT
1 GAGGGAATCGATTCCCCCCAT
* **
96875 GAGGGAACCGATTCCCCCTTT
1 GAGGGAATCGATTCCCCCCAT
*
96896 GAAGGGGAATCGATCCCCCCCA-
1 G-A-GGGAATCGATTCCCCCCAT
* *
96918 CAGGGGAATCGATACCCCCC
1 GA-GGGAATCGATTCCCCCC
96938 TGGGGTTCTG
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
20 10 0.20
21 26 0.51
22 1 0.02
23 14 0.27
ACGTcount: A:0.24, C:0.36, G:0.25, T:0.14
Consensus pattern (21 bp):
GAGGGAATCGATTCCCCCCAT
Found at i:102118 original size:3 final size:3
Alignment explanation
Indices: 102103--102169 Score: 66
Period size: 3 Copynumber: 22.7 Consensus size: 3
102093 TATGTAACAT
* * * * *
102103 TAA TAA TAG TAA TAA TAA TAA TAA TGTA TTA TAA T-A TAA TAG TTA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
102148 TAA TAA TAA TAA TAA T-A TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA
102170 TTTATAACCC
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
2 4 0.08
3 47 0.89
4 2 0.04
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:105580 original size:40 final size:40
Alignment explanation
Indices: 105536--105663 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 40
105526 TTATGTTGCT
* * * *
105536 GAAAGTCTCGATAGTCTT-GGGTAAAATATTGATACTCTTG
1 GAAAGTATCAATACTCTTAGGG-AAAATATCGATACTCTTG
* *
105576 GAAAGTATCAATACTCTTAGGGAAAGTATCGATACTTTTG
1 GAAAGTATCAATACTCTTAGGGAAAATATCGATACTCTTG
* * ** *
105616 GAAAGTATCAATACTGTTGGGGAATGTATCCATACTCTTG
1 GAAAGTATCAATACTCTTAGGGAAAATATCGATACTCTTG
105656 GAAAGTAT
1 GAAAGTAT
105664 TGATACCCTT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
40 73 0.96
41 3 0.04
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (40 bp):
GAAAGTATCAATACTCTTAGGGAAAATATCGATACTCTTG
Found at i:105601 original size:21 final size:19
Alignment explanation
Indices: 105567--105663 Score: 113
Period size: 19 Copynumber: 4.9 Consensus size: 19
105557 TAAAATATTG
105567 ATACTCTTGGAAAGTATCA
1 ATACTCTTGGAAAGTATCA
*
105586 ATACTCTTAGGGAAAGTATCG
1 ATACTCTT--GGAAAGTATCA
*
105607 ATACTTTTGGAAAGTATCA
1 ATACTCTTGGAAAGTATCA
* * *
105626 ATACTGTTGGGGAATGTATCC
1 ATACTCTT--GGAAAGTATCA
105647 ATACTCTTGGAAAGTAT
1 ATACTCTTGGAAAGTAT
105664 TGATACCCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
19 33 0.50
21 33 0.50
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (19 bp):
ATACTCTTGGAAAGTATCA
Found at i:105669 original size:19 final size:19
Alignment explanation
Indices: 105536--105669 Score: 115
Period size: 21 Copynumber: 6.7 Consensus size: 19
105526 TTATGTTGCT
* *
105536 GAAAGTCTCGATAGTCTTGG
1 GAAAGTATCGATACTCTT-G
* *
105556 GTAAAATATTGATACTCTTG
1 G-AAAGTATCGATACTCTTG
*
105576 GAAAGTATCAATACTCTTAGG
1 GAAAGTATCGATACTCTT--G
*
105597 GAAAGTATCGATACTTTTG
1 GAAAGTATCGATACTCTTG
* *
105616 GAAAGTATCAATACTGTTGGG
1 GAAAGTATCGATACTCTT--G
* *
105637 GAATGTATCCATACTCTTG
1 GAAAGTATCGATACTCTTG
*
105656 GAAAGTATTGATAC
1 GAAAGTATCGATAC
105670 CCTTTTCCTG
Statistics
Matches: 92, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
19 43 0.47
20 3 0.03
21 46 0.50
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.33
Consensus pattern (19 bp):
GAAAGTATCGATACTCTTG
Found at i:106813 original size:21 final size:19
Alignment explanation
Indices: 106779--106821 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
106769 AACTACAAAG
106779 GAAAATAATATTTTCTAAGGA
1 GAAAATAATATTTTC-AA-GA
106800 GAAAA-AATATTTTTCAAGA
1 GAAAATAATA-TTTTCAAGA
106819 GAA
1 GAA
106822 GGAAAGTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 5 0.24
20 6 0.29
21 10 0.48
ACGTcount: A:0.51, C:0.05, G:0.14, T:0.30
Consensus pattern (19 bp):
GAAAATAATATTTTCAAGA
Found at i:107290 original size:16 final size:16
Alignment explanation
Indices: 107269--107328 Score: 72
Period size: 16 Copynumber: 3.8 Consensus size: 16
107259 CGGGTTATAA
107269 ATATTA-TATTTAAATT
1 ATATTATTA-TTAAATT
*
107285 ATATTATTATTATATT
1 ATATTATTATTAAATT
107301 ATATTATTATT--ATT
1 ATATTATTATTAAATT
107315 ATTATTATTATTAA
1 A-TATTATTATTAA
107329 TGTTACATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
14 4 0.10
15 10 0.26
16 23 0.59
17 2 0.05
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
ATATTATTATTAAATT
Found at i:107294 original size:3 final size:3
Alignment explanation
Indices: 107282--107327 Score: 71
Period size: 3 Copynumber: 16.3 Consensus size: 3
107272 TTATATTTAA
107282 ATT A-T ATT ATT ATT A-T ATT A-T ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
107327 A
1 A
107328 ATGTTACATA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
2 6 0.15
3 34 0.85
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:107297 original size:22 final size:22
Alignment explanation
Indices: 107270--107324 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
107260 GGGTTATAAA
107270 TATTATATTTAAATTA-TATTAT
1 TATTATA-TTAAATTATTATTAT
*
107292 TATTATATTATATTATTATTAT
1 TATTATATTAAATTATTATTAT
107314 TATTATTATTA
1 TATTA-TATTA
107325 TTAATGTTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 7 0.23
22 18 0.60
23 5 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
TATTATATTAAATTATTATTAT
Found at i:107339 original size:25 final size:25
Alignment explanation
Indices: 107286--107341 Score: 51
Period size: 25 Copynumber: 2.1 Consensus size: 25
107276 ATTTAAATTA
*
107286 TATTATTAT-TATATTATATTATTAT
1 TATTATTATAT-TATTATATTAATAT
*
107311 TATTATTATTATTATTAATGTTACATAT
1 TATTATTA-TATTATT-ATATTA-ATAT
107339 TAT
1 TAT
107342 ATTTTACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
25 8 0.32
26 5 0.20
27 6 0.24
28 6 0.24
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (25 bp):
TATTATTATATTATTATATTAATAT
Found at i:107941 original size:146 final size:146
Alignment explanation
Indices: 107682--108066 Score: 583
Period size: 146 Copynumber: 2.6 Consensus size: 146
107672 CTCGCCGGAA
* * * *
107682 ATCGGGATCTCCGATCAACATTCCGAACGGTCAAAAGTTGCGTAAGGCCATCACGAACAACATAT
1 ATCGGAATCTGCGATCAATATTCCGAACGGTCAAAAGTTGCGGAAGGCCATCACGAACAACATAT
* * *
107747 TGAAAAATCAGGACGATCAGACGGTGGACGGTGACGGATCGGAGAAAACAAATCTGGGCGGTTTT
66 TGAAAAATCAGGACGATCAGACGGTGGACGGTGACGGATCGGAAAAAACAAATCCGGACGGTTTT
107812 TAGCCTCTTGCCGGTG
131 TAGCCTCTTGCCGGTG
** *
107828 ATCGGAATCTTTGATCAATATTCCGAACGGTCAAAAGTTGCGGAAGGCCATCACGAATAACATAT
1 ATCGGAATCTGCGATCAATATTCCGAACGGTCAAAAGTTGCGGAAGGCCATCACGAACAACATAT
* *
107893 TGAAAAATCAGGACGATCACACGGTGGACGGTGATGGATCGGAAAAAACAAATCCGGACGGTTTT
66 TGAAAAATCAGGACGATCAGACGGTGGACGGTGACGGATCGGAAAAAACAAATCCGGACGGTTTT
107958 TAGCCTCTTGCCGGTG
131 TAGCCTCTTGCCGGTG
* * * * *
107974 ATCGGAATCTGCGATCAATATTCCGAACGGTGAAAAGTTGCGCG-ATGCCAACACAAACAACCTA
1 ATCGGAATCTGCGATCAATATTCCGAACGGTCAAAAGTTGCG-GAAGGCCATCACGAACAACATA
* *
108038 TTGAAAAATCAGGACAATCGGACGGTGGA
65 TTGAAAAATCAGGACGATCAGACGGTGGA
108067 TGACGGCAGA
Statistics
Matches: 216, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
146 215 1.00
147 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (146 bp):
ATCGGAATCTGCGATCAATATTCCGAACGGTCAAAAGTTGCGGAAGGCCATCACGAACAACATAT
TGAAAAATCAGGACGATCAGACGGTGGACGGTGACGGATCGGAAAAAACAAATCCGGACGGTTTT
TAGCCTCTTGCCGGTG
Found at i:114121 original size:122 final size:125
Alignment explanation
Indices: 113879--114136 Score: 344
Period size: 122 Copynumber: 2.1 Consensus size: 125
113869 AAGTTGTGAT
* * * *
113879 ATGTTGGGGCATGACTGAACCCAAATCATGTTGAGATGAAAAGATTCAGACCAAGGAGGCATGAA
1 ATGTTGGGGCATGACTGAACCCAAATCATGTCGAGATGAAAAGATTAAGACCAAGAAGGAATGAA
* ** *
113944 GAATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGATA
66 GAATGAGCCTTACAAGTTGAGGTGATGGAACATTTTGAAGGCCCGTACCAATATAAGATA
* * *
114004 ATGTTGGGGCATGACTGAACCCACATCATGTCGAGATG-ACA-A-TAAGACTAAGAAGGAATTG-
1 ATGTTGGGGCATGACTGAACCCAAATCATGTCGAGATGAAAAGATTAAGACCAAGAAGGAA-TGA
* * *
114065 AGAATGAGCCTTACAAGTTGAGGTGTTGGAATATTTTGAAGGCCCGTATCAATATAAGATA
65 AGAATGAGCCTTACAAGTTGAGGTGATGGAACATTTTGAAGGCCCGTACCAATATAAGATA
*
114126 ATGTTGTGGCA
1 ATGTTGGGGCA
114137 CAAGTGACGA
Statistics
Matches: 117, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
122 76 0.65
123 3 0.03
124 2 0.02
125 36 0.31
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (125 bp):
ATGTTGGGGCATGACTGAACCCAAATCATGTCGAGATGAAAAGATTAAGACCAAGAAGGAATGAA
GAATGAGCCTTACAAGTTGAGGTGATGGAACATTTTGAAGGCCCGTACCAATATAAGATA
Found at i:115351 original size:36 final size:36
Alignment explanation
Indices: 115309--115385 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
115299 AGCAAAGTCA
* * * * *
115309 ATCTTAAGCCTTCACTAAAGAGTAGTGAAGCAAACC
1 ATCTTAAGCATGCACCAAAGAATAATGAAGCAAACC
*
115345 GTCTTAAGCATGCACCAAAGAATAATGAAGCAAACC
1 ATCTTAAGCATGCACCAAAGAATAATGAAGCAAACC
115381 ATCTT
1 ATCTT
115386 GTGTCTTCAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.22
Consensus pattern (36 bp):
ATCTTAAGCATGCACCAAAGAATAATGAAGCAAACC
Found at i:115937 original size:54 final size:54
Alignment explanation
Indices: 115795--116449 Score: 746
Period size: 54 Copynumber: 12.3 Consensus size: 54
115785 AGTGAAGCAA
* * *
115795 AAGAAGATTTTCGAGTTTCATACTCCCTAGAGAAAAAGGGAGCGAACCCGTTTG
1 AAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* *
115849 AAG-A-TTGTTCGAGTTTCATACTCCCT-GAAGAAAGAGGGAGCGAACCCGTTTG
1 AAGAAGATGTTCGAGTTCCATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTTG
* * ** * * *
115901 AAGAAGAGGTACGAGTTTTATACTCCTTAAAGAAAGAGGGAGCGAACCAGTTTG
1 AAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* *
115955 AAGAAGATGTCCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
1 AAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* *
116009 AAGAAGATGTCCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
1 AAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* * *
116063 AAGAAGAT-TTCTGAGTTTCATACTTCCTAGAGAAAGAGGGAGTGAACCCG--TG
1 AAGAAGATGTTC-GAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* * * * * *
116115 -TGAAGATATCCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTG
1 AAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* *
116168 AAG-AGATGTTTGAGTTCCATACTCCCTAGAGAAAGAGGGAGAGAACCCG--TG
1 AAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* * * * *
116219 -TGAAGATATTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTG
1 AAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* *
116272 AAG-AGATGTTTGAGTTCCATACTCCTTAGAGAAAGAGGGAGCGAACCCGTTTG
1 AAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* * *
116325 AAGAAGATTTTCGAGTTCCATACTTCCTAGAGAAAGAGGGAGTGAACCCCG--T-
1 AAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAA-CCCGTTTG
* * * * * *
116377 AAGAAGATTATTCGAGTTCTATACTGCCTGAAAGAAAGAGGGAGTGAACCCGATTG
1 AAGAAGA-TGTTCGAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTG
**
116433 TTGAAGATTGTTCGAGT
1 AAGAAGA-TGTTCGAGT
116450 CTTATACTCT
Statistics
Matches: 520, Mismatches: 61, Indels: 38
0.84 0.10 0.06
Matches are distributed among these distances:
50 1 0.00
51 81 0.16
52 57 0.11
53 119 0.23
54 243 0.47
55 5 0.01
56 14 0.03
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (54 bp):
AAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
Found at i:116548 original size:55 final size:55
Alignment explanation
Indices: 116379--117026 Score: 601
Period size: 55 Copynumber: 11.8 Consensus size: 55
116369 AACCCCGTAA
* * * *
116379 GAAGATTATTCGAGT-TCTATACTGC-CTGAAAGAAAGAGGGAG-TGAACCCGATTGTT
1 GAAGATTGTTCGAGTCT-TATACT-CTCT-AAAGAAATAGGGAGCAG-ACACGATTGTT
* * *
116435 GAAGATTGTTCGAGTCTTATACTCTCTCTGAAGAAATAGGGAGTAGACACGACTGTT
1 GAAGATTGTTCGAGTCTTATA--CTCTCTAAAGAAATAGGGAGCAGACACGATTGTT
* *
116492 GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCATACACGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCAGACACGATTGTT
* * * *
116547 GAAGATTGTTCGAGTCTTATACTCTTTGAAGGAATAGGGAGCGGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCAGACACGATTGTT
* * *
116602 GAAGATTGTTCGAGTATTATACTCTCTGAATG-AATAGAGAGCAGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCT-AAAGAAATAGGGAGCAGACACGATTGTT
* * * * * * *
116657 GAAGATTGTTTGAGTCTTATACTTTCTGAAGGAATAGGGAGAAAACACGGTTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCAGACACGATTGTT
* * *
116712 GAAGGTTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCAGACACGATTGTT
* *
116767 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCAGACACGATTGTT
* * *
116822 GAAGA-TGTTCGAGT-TCTATACT-TCCTAAAGAAAGAGGGAGC-GAACCCGATT-TCA
1 GAAGATTGTTCGAGTCT-TATACTCT-CTAAAGAAATAGGGAGCAG-ACACGATTGT-T
* * * * ** *
116876 GAAGATT-TGCGAGT-TATATACTCCCTAAAGAAAGAGGGAGC-GAACCCGAAGGCAT
1 GAAGATTGTTCGAGTCT-TATACTCTCTAAAGAAATAGGGAGCAG-ACACGATTG-TT
** * * **
116931 -AAGATTGTTCGAGT-TCCTACTCCCTAAAGAAATAGGGAGC-GA-ACCCATTGGCA
1 GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCAGACA-CGATT-GTT
* * *
116984 GAAGATTATTCGAGT-TTCATACTCTCTGAAGAAAGAGGGAGCA
1 GAAGATTGTTCGAGTCTT-ATACTCTCTAAAGAAATAGGGAGCA
117027 AACCCGTAGG
Statistics
Matches: 504, Mismatches: 67, Indels: 42
0.82 0.11 0.07
Matches are distributed among these distances:
53 7 0.01
54 125 0.25
55 303 0.60
56 20 0.04
57 44 0.09
58 5 0.01
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.27
Consensus pattern (55 bp):
GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCAGACACGATTGTT
Found at i:116860 original size:54 final size:54
Alignment explanation
Indices: 115797--117032 Score: 705
Period size: 54 Copynumber: 22.9 Consensus size: 54
115787 TGAAGCAAAA
* * * *
115797 GAAGATTTTCGAGTT-TCATACTCCCTAGAGAAAAAGGGAGCGAACCCG--T-TT
1 GAAGATGTTCGAGTTCT-ATACTTCCTAAAGAAAGAGGGAGCGAACCCGATTGTT
* * * **
115848 GAAGATTGTTCGAGTT-TCATACTCCCTGAAGAAAGAGGGAGCGAACCCGTTTGAA
1 GAAGA-TGTTCGAGTTCT-ATACTTCCTAAAGAAAGAGGGAGCGAACCCGATTGTT
* * * * * **
115903 GAAGAGGTACGAGTTTTATAC-TCCTTAAAGAAAGAGGGAGCGAACCAGTTTGAA
1 GAAGATGTTCGAGTTCTATACTTCC-TAAAGAAAGAGGGAGCGAACCCGATTGTT
* * * * **
115957 GAAGATGTCCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA
1 GAAGATGTTCGAGTTCTATACTTCCTAAAGAAAGAGGGAGCGAACCCGATTGTT
* * * * **
116011 GAAGATGTCCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAA
1 GAAGATGTTCGAGTTCTATACTTCCTAAAGAAAGAGGGAGCGAACCCGATTGTT
* *
116065 GAAGAT-TTCTGAGTT-TCATACTTCCTAGAGAAAGAGGGAGTGAACCCG--TG-T
1 GAAGATGTTC-GAGTTCT-ATACTTCCTAAAGAAAGAGGGAGCGAACCCGATTGTT
* * * * * **
116116 GAAGATATCCGAGTTCCATAC-TCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAA
1 GAAGATGTTCGAGTTCTATACTTCC-TAAAGAAAGAGGGAGCGAACCCGATTGTT
* * * * *
116170 G-AGATGTTTGAGTTCCATACTCCCTAGAGAAAGAGGGAGAGAACCCG--TG-T
1 GAAGATGTTCGAGTTCTATACTTCCTAAAGAAAGAGGGAGCGAACCCGATTGTT
* * * * **
116220 GAAGATATTCGAGTTCCATAC-TCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAA
1 GAAGATGTTCGAGTTCTATACTTCC-TAAAGAAAGAGGGAGCGAACCCGATTGTT
* * * * **
116274 G-AGATGTTTGAGTTCCATAC-TCCTTAGAGAAAGAGGGAGCGAACCCGTTTGAA
1 GAAGATGTTCGAGTTCTATACTTCC-TAAAGAAAGAGGGAGCGAACCCGATTGTT
* * * * **
116327 GAAGATTTTCGAGTTCCATACTTCCTAGAGAAAGAGGGAGTGAACCCCG--T-AA
1 GAAGATGTTCGAGTTCTATACTTCCTAAAGAAAGAGGGAGCGAA-CCCGATTGTT
* * *
116379 GAAGATTATTCGAGTTCTATACTGCCTGAAAGAAAGAGGGAGTGAACCCGATTGTT
1 GAAGA-TGTTCGAGTTCTATACTTCCT-AAAGAAAGAGGGAGCGAACCCGATTGTT
* * * * *
116435 GAAGATTGTTCGAG-TCTTATACTCTCTCTGAAGAAATAGGGAG-TAGACACGACTGTT
1 GAAGA-TGTTCGAGTTC-TATACT-TC-CTAAAGAAAGAGGGAGCGA-ACCCGATTGTT
* * *
116492 GAAGATTGTTCGAG-TCTTATAC-TCTCTAAAGAAATAGGGAGC-ATACACGATCGTT
1 GAAGA-TGTTCGAGTTC-TATACTTC-CTAAAGAAAGAGGGAGCGA-ACCCGATTGTT
* * * * * *
116547 GAAGATTGTTCGAG-TCTTATAC-TCTTTGAAGGAATAGGGAGCGGACACGATTGTT
1 GAAGA-TGTTCGAGTTC-TATACTTC-CTAAAGAAAGAGGGAGCGAACCCGATTGTT
* *
116602 GAAGATTGTTCGAGTAT-TATAC-TCTCTGAATGAATAGA--GAGC-AGACACGATTGTT
1 GAAGA-TGTTCGAGT-TCTATACTTC-CT-AAAGAA-AGAGGGAGCGA-ACCCGATTGTT
* * * * * ** * *
116657 GAAGATTGTTTGAG-TCTTATACTTTCTGAAGGAATAGGGAGAAAACACGGTTGTT
1 GAAGA-TGTTCGAGTTC-TATACTTCCTAAAGAAAGAGGGAGCGAACCCGATTGTT
* * * * *
116712 GAAGGTTGTTCGAG-TCTTATAC-TCTCTGAAGGAATAGGGAGC-AGACACGATTGTT
1 GAA-GATGTTCGAGTTC-TATACTTC-CTAAAGAAAGAGGGAGCGA-ACCCGATTGTT
* * * *
116767 GAAGATTGTTCGAG-TCTTATAC-TCTCTGAAGGAATAGGGAGC-AGACACGATTGTT
1 GAAGA-TGTTCGAGTTC-TATACTTC-CTAAAGAAAGAGGGAGCGA-ACCCGATTGTT
*
116822 GAAGATGTTCGAGTTCTATACTTCCTAAAGAAAGAGGGAGCGAACCCGATT-TCA
1 GAAGATGTTCGAGTTCTATACTTCCTAAAGAAAGAGGGAGCGAACCCGATTGT-T
* * ** *
116876 GAAGAT-TTGCGAGTTATATACTCCCTAAAGAAAGAGGGAGCGAACCCGAAGGCAT
1 GAAGATGTT-CGAGTTCTATACTTCCTAAAGAAAGAGGGAGCGAACCCGATTG-TT
* * * **
116931 -AAGATTGTTCGAGTTC-CTACTCCCTAAAGAAATAGGGAGCGAACCC-ATTGGCA
1 GAAGA-TGTTCGAGTTCTATACTTCCTAAAGAAAGAGGGAGCGAACCCGATT-GTT
* * *
116984 GAAGATTATTCGAGTT-TCATAC-TCTCTGAAGAAAGAGGGAGCAAACCCG
1 GAAGA-TGTTCGAGTTCT-ATACTTC-CTAAAGAAAGAGGGAGCGAACCCG
117033 TAGGCAGAAG
Statistics
Matches: 1005, Mismatches: 115, Indels: 125
0.81 0.09 0.10
Matches are distributed among these distances:
50 6 0.01
51 79 0.08
52 50 0.05
53 124 0.12
54 367 0.37
55 302 0.30
56 28 0.03
57 47 0.05
58 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (54 bp):
GAAGATGTTCGAGTTCTATACTTCCTAAAGAAAGAGGGAGCGAACCCGATTGTT
Found at i:117230 original size:3 final size:3
Alignment explanation
Indices: 117218--117269 Score: 83
Period size: 3 Copynumber: 18.3 Consensus size: 3
117208 TTATATTTAA
117218 ATT A-T ATT ATT ATT ATT A-T ATT ATT ATT ATT ATT ATT ATT ATT A-T
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
117263 ATT ATT A
1 ATT ATT A
117270 ATGTTACATA
Statistics
Matches: 46, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
2 6 0.13
3 40 0.87
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:117235 original size:14 final size:14
Alignment explanation
Indices: 117218--117269 Score: 90
Period size: 14 Copynumber: 3.9 Consensus size: 14
117208 TTATATTTAA
117218 ATTATATTATTATT
1 ATTATATTATTATT
117232 ATTATATTATTATT
1 ATTATATTATTATT
117246 A-T-TATTATTATT
1 ATTATATTATTATT
117258 ATTATATTATTA
1 ATTATATTATTA
117270 ATGTTACATA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
12 11 0.31
13 2 0.06
14 23 0.64
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
ATTATATTATTATT
Found at i:117286 original size:26 final size:26
Alignment explanation
Indices: 117225--117283 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
117215 TAAATTATAT
* *
117225 TATTATTATTATATTATTATTATTAT
1 TATTATTATTATATTATTAATATTAA
*
117251 TATTATTATTATATTATTAATGTTACA
1 TATTATTATTATATTATTAATATTA-A
117278 TATTAT
1 TATTAT
117284 ATTTTACAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (26 bp):
TATTATTATTATATTATTAATATTAA
Found at i:117883 original size:145 final size:146
Alignment explanation
Indices: 117620--118003 Score: 583
Period size: 145 Copynumber: 2.6 Consensus size: 146
117610 CTCGCCGGAA
* * * ** *
117620 ATCGGGATCTCCGATCAACATTCCGAACATTCAAAAGTTGCGTAAGGCCATCACAAACAACATAT
1 ATCGGAATCTGCGATCAATATTCCGAACGGTCAAAAGTTGCGGAAGGCCATCACAAACAACATAT
* *
117685 TGAAAAATCAGGACGATCTGACGGTGGACGGTGACGGATCGGAGAAAACAAATCCGGGCGG-TTT
66 TGAAAAATCAGGACGATCAGACGGTGGACGGTGACGGATCGGAGAAAACAAATCCGGACGGTTTT
*
117749 TAGCCTCTTGTCGGTG
131 TAGCCTCTTGCCGGTG
** *
117765 ATCGGAATCTTTGATCAATATTCCGAACGGTCAAAAGTTGCGGAAGGCCATCACGAACAACATAT
1 ATCGGAATCTGCGATCAATATTCCGAACGGTCAAAAGTTGCGGAAGGCCATCACAAACAACATAT
117830 TGAAAAATCAGGACGATCAGACGGTGGACGGTGACGGATCGGAGAAAACAAATCCGGACGGTTTT
66 TGAAAAATCAGGACGATCAGACGGTGGACGGTGACGGATCGGAGAAAACAAATCCGGACGGTTTT
117895 TAGCCTCTTGCCGGTG
131 TAGCCTCTTGCCGGTG
* * * *
117911 ATCGGAATCTGCGATCAATATTCCGAACGGTGAAAAGTTGCGCG-ATGCCAACACAAACAACCTA
1 ATCGGAATCTGCGATCAATATTCCGAACGGTCAAAAGTTGCG-GAAGGCCATCACAAACAACATA
* *
117975 TTGAAAAATCAGGACAATCGGACGGTGGA
65 TTGAAAAATCAGGACGATCAGACGGTGGA
118004 TGACGACAGA
Statistics
Matches: 217, Mismatches: 20, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
145 116 0.53
146 100 0.46
147 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.21
Consensus pattern (146 bp):
ATCGGAATCTGCGATCAATATTCCGAACGGTCAAAAGTTGCGGAAGGCCATCACAAACAACATAT
TGAAAAATCAGGACGATCAGACGGTGGACGGTGACGGATCGGAGAAAACAAATCCGGACGGTTTT
TAGCCTCTTGCCGGTG
Found at i:118178 original size:16 final size:16
Alignment explanation
Indices: 118152--118194 Score: 77
Period size: 16 Copynumber: 2.6 Consensus size: 16
118142 TTGGGTCATT
118152 TTCATATTTTACGCGTA
1 TTCA-ATTTTACGCGTA
118169 TTCAATTTTACGCGTA
1 TTCAATTTTACGCGTA
118185 TTCAATTTTA
1 TTCAATTTTA
118195 GTCCTGAGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 22 0.85
17 4 0.15
ACGTcount: A:0.26, C:0.16, G:0.09, T:0.49
Consensus pattern (16 bp):
TTCAATTTTACGCGTA
Found at i:120601 original size:208 final size:214
Alignment explanation
Indices: 120225--120612 Score: 610
Period size: 208 Copynumber: 1.8 Consensus size: 214
120215 AATTAAGAAT
*
120225 TAAATTGAATAAATATGAAATTACAAATAAAAATTTAAATATATTAAACAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATATATTAAACAACACACA-T-A-GAG
* * *
120290 GGATTAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATACAAAAAAATACTAAAATTATA
63 GGATCAAATCAAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAATACTAAAATTATA
120355 CCCAATTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAATAAGTATGGGTCACTTTCAG
128 CCCAATTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAATAAGTATGGGTCACTTTCAG
120420 GTGCAAATAAAATTTGGAGGAC
193 GTGCAAATAAAATTTGGAGGAC
120442 TAAATTGAACAAATATGAAATTACAAATAAAAATTT-AATATATTAAACAACACA-A-A-AGGGA
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATATATTAAACAACACACATAGAGGGA
* ** *
120503 TCAAATCAAAATAATTTTAAATTTTGAGGTTGAAATTAATAC-AAAATGTACT-AAATTATACTC
66 TCAAATCAAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAATACTAAAATTATACCC
*
120566 ATTTAAAAAGTTATGGGCCAA-TTAATAAATAGAAATAAGTAATAAGT
131 AATTAAAAAGTTATGGGCCAATTTAA-AAATAGAAATAAGTAATAAGT
120613 TGAGAAAAAA
Statistics
Matches: 161, Mismatches: 9, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
207 4 0.02
208 51 0.32
209 8 0.05
210 43 0.27
212 1 0.01
215 1 0.01
216 18 0.11
217 35 0.22
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.30
Consensus pattern (214 bp):
TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATATATTAAACAACACACATAGAGGGA
TCAAATCAAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAATACTAAAATTATACCC
AATTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAATAAGTATGGGTCACTTTCAGGTG
CAAATAAAATTTGGAGGAC
Found at i:120643 original size:2 final size:2
Alignment explanation
Indices: 120638--120690 Score: 69
Period size: 2 Copynumber: 28.0 Consensus size: 2
120628 AAACATAATA
120638 AT AT AT AT AT A- AT AT AT -T AT AT AT AT AT AT A- AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
120677 AGT AT A- AT AT AT AT
1 A-T AT AT AT AT AT AT
120691 TATGTATAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
1 4 0.09
2 40 0.87
3 2 0.04
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:120654 original size:9 final size:9
Alignment explanation
Indices: 120640--120714 Score: 62
Period size: 9 Copynumber: 7.8 Consensus size: 9
120630 ACATAATAAT
120640 ATATATATA
1 ATATATATA
120649 ATATATTATA
1 ATATA-TATA
120659 TATATATATA
1 -ATATATATA
120669 ATATATATA
1 ATATATATA
120678 GTATAATATATA
1 --AT-ATATATA
* *
120690 TTATGTATA
1 ATATATATA
*
120699 A-AGTATAAA
1 ATA-TATATA
120708 ATATATA
1 ATATATA
120715 CATGTATAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
8 1 0.02
9 29 0.54
10 10 0.19
11 7 0.13
12 7 0.13
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (9 bp):
ATATATATA
Found at i:120663 original size:20 final size:19
Alignment explanation
Indices: 120638--120714 Score: 79
Period size: 20 Copynumber: 4.1 Consensus size: 19
120628 AAACATAATA
120638 ATATATATATAATATATTAT
1 ATATATATATAATATA-TAT
120658 ATATATATATAATATATAT
1 ATATATATATAATATATAT
120677 AGTATA-ATAT-ATAT-TAT
1 A-TATATATATAATATATAT
* * *
120694 GTATAAAGTATAAAATATAT
1 ATATATA-TATAATATATAT
120714 A
1 A
120715 CATGTATAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
16 4 0.08
17 4 0.08
18 7 0.14
19 11 0.22
20 23 0.47
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (19 bp):
ATATATATATAATATATAT
Found at i:120689 original size:16 final size:16
Alignment explanation
Indices: 120635--120699 Score: 75
Period size: 16 Copynumber: 4.2 Consensus size: 16
120625 TTAAAACATA
*
120635 ATAATATATATATAAT
1 ATAATATATATATAGT
*
120651 ATATTATATATATA-T
1 ATAATATATATATAGT
120666 AT-A-ATATATATAGT
1 ATAATATATATATAGT
120680 ATAATATATAT-TATGT
1 ATAATATATATATA-GT
120696 ATAA
1 ATAA
120700 AGTATAAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
13 9 0.21
14 3 0.07
15 6 0.14
16 25 0.58
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (16 bp):
ATAATATATATATAGT
Found at i:120827 original size:23 final size:23
Alignment explanation
Indices: 120792--120875 Score: 82
Period size: 23 Copynumber: 3.6 Consensus size: 23
120782 TATATATAAA
**
120792 TTATATAACTATACAATT-TATAT
1 TTATATATGTATA-AATTATATAT
*
120815 TTATATATGTAT-AATTATAAAT
1 TTATATATGTATAAATTATATAT
*
120837 AATATATATGTATAAATTATATAGT
1 -TTATATATGTATAAATTATATA-T
120862 TTATATATAGTATA
1 TTATATAT-GTATA
120876 TATGGTTTAG
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
21 4 0.08
22 4 0.08
23 21 0.42
24 15 0.30
25 6 0.12
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (23 bp):
TTATATATGTATAAATTATATAT
Found at i:120842 original size:44 final size:48
Alignment explanation
Indices: 120786--120875 Score: 118
Period size: 46 Copynumber: 2.0 Consensus size: 48
120776 ATTGTTTATA
*
120786 TATAAAT--TATATAACTATACAATT-TATA-TTTATATAT-GTATAAT
1 TATAAATAATATATATCTATA-AATTATATAGTTTATATATAGTATAAT
*
120830 TATAAATAATATATATGTATAAATTATATAGTTTATATATAGTATA
1 TATAAATAATATATATCTATAAATTATATAGTTTATATATAGTATA
120876 TATGGTTTAG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 7 0.18
45 4 0.10
46 14 0.36
47 9 0.23
48 5 0.13
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (48 bp):
TATAAATAATATATATCTATAAATTATATAGTTTATATATAGTATAAT
Found at i:120947 original size:23 final size:21
Alignment explanation
Indices: 120889--120982 Score: 79
Period size: 20 Copynumber: 4.4 Consensus size: 21
120879 GGTTTAGGGT
120889 TATATTTATATTTATATAAAC
1 TATATTTATATTTATATAAAC
* *
120910 TACATACTATAATTTATATATATAC
1 TATAT-TTAT-ATTTATATA-A-AC
120935 TATATTTATA-TT-TATAAAC
1 TATATTTATATTTATATAAAC
*
120954 TATAGTTTATA--TATATGAAC
1 TATA-TTTATATTTATATAAAC
120974 TATAGTTTA
1 TATA-TTTA
120983 CATATGAACT
Statistics
Matches: 62, Mismatches: 5, Indels: 13
0.77 0.06 0.16
Matches are distributed among these distances:
19 7 0.11
20 22 0.35
21 8 0.13
22 5 0.08
23 10 0.16
24 4 0.06
25 6 0.10
ACGTcount: A:0.41, C:0.06, G:0.03, T:0.49
Consensus pattern (21 bp):
TATATTTATATTTATATAAAC
Found at i:120964 original size:20 final size:19
Alignment explanation
Indices: 120915--120995 Score: 78
Period size: 20 Copynumber: 4.3 Consensus size: 19
120905 TAAACTACAT
* *
120915 ACTATAATTTATA-TATAT
1 ACTATAGTTTATATTATAA
120933 ACTATA-TTTATATTTATAA
1 ACTATAGTTTATA-TTATAA
*
120952 ACTATAGTTTATATATATGA
1 ACTATAGTTTATAT-TATAA
* *
120972 ACTATAGTTTACA-TATGA
1 ACTATAGTTTATATTATAA
120990 ACTATA
1 ACTATA
120996 TATACTAAGG
Statistics
Matches: 56, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.11
18 17 0.30
19 11 0.20
20 22 0.39
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.46
Consensus pattern (19 bp):
ACTATAGTTTATATTATAA
Found at i:121023 original size:32 final size:34
Alignment explanation
Indices: 120979--121065 Score: 115
Period size: 38 Copynumber: 2.5 Consensus size: 34
120969 TGAACTATAG
120979 TTTACATATGAACTATA-TATACTAAGG-TGATA
1 TTTACATATGAACTATATTATACTAAGGTTGATA
*
121011 TTTATATATGAACTATAGTTTTTATACTAAGGTTGATA
1 TTTACATATGAACTATA----TTATACTAAGGTTGATA
121049 TTTACATATGAACTATA
1 TTTACATATGAACTATA
121066 GTTTATATGA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
32 16 0.34
37 10 0.21
38 21 0.45
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (34 bp):
TTTACATATGAACTATATTATACTAAGGTTGATA
Found at i:121058 original size:38 final size:37
Alignment explanation
Indices: 120996--121069 Score: 130
Period size: 38 Copynumber: 2.0 Consensus size: 37
120986 ATGAACTATA
*
120996 TATACTAAGGTGATATTTATATATGAACTATAGTTTT
1 TATACTAAGGTGATATTTACATATGAACTATAGTTTT
121033 TATACTAAGGTTGATATTTACATATGAACTATAGTTT
1 TATACTAAGG-TGATATTTACATATGAACTATAGTTT
121070 ATATGAACTA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 10 0.29
38 25 0.71
ACGTcount: A:0.35, C:0.07, G:0.14, T:0.45
Consensus pattern (37 bp):
TATACTAAGGTGATATTTACATATGAACTATAGTTTT
Found at i:121323 original size:30 final size:30
Alignment explanation
Indices: 121287--121495 Score: 146
Period size: 30 Copynumber: 7.3 Consensus size: 30
121277 CCCTAAACCC
*
121287 TAAACTATACATTATATAGTT-ATTGGTATA
1 TAAACTATA-ATTATATAGTTCATTAGTATA
* * *
121317 TAAACTATGA-TATATAG-ACTATATGGTATA
1 TAAACTATAATTATATAGTTC-AT-TAGTATA
*
121347 TATAA-AATACATTATATAGTTCATTAGTATA
1 TA-AACTATA-ATTATATAGTTCATTAGTATA
121378 T--A-TATAA-TACTATAGTTCATTAGTAGTA
1 TAAACTATAATTA-TATAGTTCATTAGTA-TA
121406 TAAACTAT-ATTATATAGTTCATTAGTATA
1 TAAACTATAATTATATAGTTCATTAGTATA
* **
121435 TAACCTAT-ATCGTAT-G-----TA-TATA
1 TAAACTATAATTATATAGTTCATTAGTATA
*
121457 CAAACTATATATTATATAGTTCATTAGTATA
1 TAAACTATA-ATTATATAGTTCATTAGTATA
121488 TAAACTAT
1 TAAACTAT
121496 GTAGTATATA
Statistics
Matches: 142, Mismatches: 15, Indels: 43
0.71 0.08 0.22
Matches are distributed among these distances:
22 10 0.07
23 2 0.01
24 5 0.04
25 1 0.01
26 2 0.01
27 16 0.11
28 15 0.11
29 17 0.12
30 38 0.27
31 26 0.18
32 9 0.06
33 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.42
Consensus pattern (30 bp):
TAAACTATAATTATATAGTTCATTAGTATA
Found at i:121391 original size:27 final size:27
Alignment explanation
Indices: 121359--121436 Score: 104
Period size: 27 Copynumber: 2.8 Consensus size: 27
121349 TAAAATACAT
121359 TATATAGTTCATTAGTATATA-TATAA
1 TATATAGTTCATTAGTATATACTATAA
*
121385 TACTATAGTTCATTAGTAGTATAAACTATAT
1 TA-TATAGTTCATTAGTA-TAT--ACTATAA
121416 TATATAGTTCATTAGTATATA
1 TATATAGTTCATTAGTATATA
121437 ACCTATATCG
Statistics
Matches: 46, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
26 2 0.04
27 16 0.35
28 3 0.07
29 3 0.07
30 16 0.35
31 6 0.13
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.45
Consensus pattern (27 bp):
TATATAGTTCATTAGTATATACTATAA
Found at i:121472 original size:18 final size:17
Alignment explanation
Indices: 121450--121533 Score: 68
Period size: 18 Copynumber: 5.0 Consensus size: 17
121440 TATATCGTAT
121450 GTATATACAAACTATATA
1 GTATATA-AAACTATATA
* ***
121468 TTATATAGTTC-AT-TA
1 GTATATAAAACTATATA
*
121483 GTATAT-AAACTATGTA
1 GTATATAAAACTATATA
121499 GTATATATAAACTATATA
1 GTATATA-AAACTATATA
121517 GTATATATAAA-TATATA
1 GTATATA-AAACTATATA
121534 TTAATTATTA
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
14 1 0.02
15 9 0.17
16 10 0.19
17 7 0.13
18 26 0.49
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.40
Consensus pattern (17 bp):
GTATATAAAACTATATA
Found at i:121472 original size:53 final size:49
Alignment explanation
Indices: 121411--121523 Score: 163
Period size: 53 Copynumber: 2.2 Consensus size: 49
121401 TAGTATAAAC
*
121411 TATATTATATAGTTCATTAGTATATAACCTATATCGTATGTATATACAAACTA
1 TATATTATATAGTTCATTAGTATATAAAC--TAT-GTA-GTATATACAAACTA
*
121464 TATATTATATAGTTCATTAGTATATAAACTATGTAGTATATATAAACTA
1 TATATTATATAGTTCATTAGTATATAAACTATGTAGTATATACAAACTA
*
121513 TATAGTATATA
1 TATATTATATA
121524 TAAATATATA
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
49 23 0.40
50 3 0.05
51 3 0.05
53 28 0.49
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (49 bp):
TATATTATATAGTTCATTAGTATATAAACTATGTAGTATATACAAACTA
Found at i:121761 original size:20 final size:21
Alignment explanation
Indices: 121709--121761 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
121699 ATATTAGTGT
*
121709 ACTATAG-TTATACTTTATAA
1 ACTATAGTTTATACATTATAA
* * *
121729 CCTATAATATATA-ATTATAA
1 ACTATAGTTTATACATTATAA
121749 ACTATAGTTTATA
1 ACTATAGTTTATA
121762 TTAATGTACA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.43
Consensus pattern (21 bp):
ACTATAGTTTATACATTATAA
Found at i:121977 original size:28 final size:26
Alignment explanation
Indices: 121903--121983 Score: 94
Period size: 26 Copynumber: 3.0 Consensus size: 26
121893 TTATAAAAAT
*
121903 ATATTATATTA-ATATAAGTTAA-TATA
1 ATATTA-ATTATAT-TAAATTAATTATA
121929 ATATTAATTATATTAAATTAATTATA
1 ATATTAATTATATTAAATTAATTATA
*
121955 ATATATAATTATTTTAATATTAATTATA
1 ATAT-TAATTATATTAA-ATTAATTATA
121983 A
1 A
121984 ATAATTTATA
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
25 11 0.22
26 16 0.33
27 11 0.22
28 11 0.22
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (26 bp):
ATATTAATTATATTAAATTAATTATA
Found at i:121989 original size:25 final size:27
Alignment explanation
Indices: 121921--121983 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
121911 TTAATATAAG
121921 TTAA-TATAATAT-TAATTATATTAAA
1 TTAATTATAATATATAATTATATTAAA
*
121946 TTAATTATAATATATAATTATTTTAATA
1 TTAATTATAATATATAATTATATTAA-A
121974 TTAATTATAA
1 TTAATTATAA
121984 ATAATTTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 4 0.12
26 8 0.24
27 11 0.32
28 11 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (27 bp):
TTAATTATAATATATAATTATATTAAA
Found at i:121991 original size:21 final size:21
Alignment explanation
Indices: 121908--121991 Score: 84
Period size: 21 Copynumber: 4.0 Consensus size: 21
121898 AAAATATATT
*
121908 ATATTAA-TATAAGTTAATATA
1 ATATTAATTATAA-TTAATTTA
*
121929 ATATTAATTAT-ATTAAATTA
1 ATATTAATTATAATTAATTTA
*
121949 AT-TATAATATATAATTATTTTA
1 ATAT-TAAT-TATAATTAATTTA
*
121971 ATATTAATTATAAATAATTTA
1 ATATTAATTATAATTAATTTA
121992 TAATAAAATT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
19 1 0.02
20 12 0.23
21 22 0.42
22 16 0.31
23 1 0.02
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (21 bp):
ATATTAATTATAATTAATTTA
Found at i:124059 original size:22 final size:22
Alignment explanation
Indices: 124028--124086 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 22
124018 TGCTTTCTTA
* *
124028 ATGCAGGATGTTTGTTGAATTG
1 ATGCATGATGCTTGTTGAATTG
124050 ATGCATGATGCTTGTTGAATTG
1 ATGCATGATGCTTGTTGAATTG
* *
124072 GTACATGATGCTTGT
1 ATGCATGATGCTTGT
124087 CGGTTGTGTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.22, C:0.08, G:0.29, T:0.41
Consensus pattern (22 bp):
ATGCATGATGCTTGTTGAATTG
Found at i:124711 original size:14 final size:14
Alignment explanation
Indices: 124687--124725 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
124677 ATATAAAAAT
124687 CAAATTTATAATATA
1 CAAA-TTATAATATA
124702 CAAATTATAATATA
1 CAAATTATAATATA
124716 -AGAATTATAA
1 CA-AATTATAA
124726 AAAATATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 1 0.04
14 18 0.78
15 4 0.17
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (14 bp):
CAAATTATAATATA
Found at i:124750 original size:19 final size:19
Alignment explanation
Indices: 124648--124754 Score: 54
Period size: 19 Copynumber: 5.9 Consensus size: 19
124638 TAATTTAATG
124648 ATTATAAATAATATAAAGA
1 ATTATAAATAATATAAAGA
*
124667 ATT-TGAATTAATATAAA-A
1 ATTAT-AAATAATATAAAGA
* *
124685 ATCA-AATTTATAATATACA-A
1 ATTATAA---ATAATATAAAGA
124705 A-T-T--ATAATAT-AAGA
1 ATTATAAATAATATAAAGA
*
124719 ATTATAAAAAATATAAAGA
1 ATTATAAATAATATAAAGA
* *
124738 ATTGTAATTAATA-AAAG
1 ATTATAAATAATATAAAG
124755 CTAAATTTAA
Statistics
Matches: 66, Mismatches: 10, Indels: 25
0.65 0.10 0.25
Matches are distributed among these distances:
13 1 0.02
14 9 0.14
15 1 0.02
16 1 0.02
17 2 0.03
18 14 0.21
19 28 0.42
20 10 0.15
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.34
Consensus pattern (19 bp):
ATTATAAATAATATAAAGA
Found at i:127144 original size:19 final size:20
Alignment explanation
Indices: 127120--127157 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
127110 TAGCTGTGCA
127120 TATATTT-TCTTTTATTTCG
1 TATATTTGTCTTTTATTTCG
*
127139 TATATTTGTCTTTTTTTTC
1 TATATTTGTCTTTTATTTC
127158 TTCTTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.13, C:0.11, G:0.05, T:0.71
Consensus pattern (20 bp):
TATATTTGTCTTTTATTTCG
Found at i:127233 original size:20 final size:21
Alignment explanation
Indices: 127189--127234 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
127179 TATGACACGG
127189 ATTTTTCTGCTTTTATAGCAC
1 ATTTTTCTGCTTTTATAGCAC
* *
127210 -TTTTTCT-CTTTTTTGGCAC
1 ATTTTTCTGCTTTTATAGCAC
127229 ATTTTT
1 ATTTTT
127235 ATTTTCTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.13, C:0.17, G:0.09, T:0.61
Consensus pattern (21 bp):
ATTTTTCTGCTTTTATAGCAC
Found at i:130462 original size:21 final size:21
Alignment explanation
Indices: 130444--130488 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
130434 TATTTTATAT
130444 AAATAAATATGATGCTTATGA
1 AAATAAATATGATGCTTATGA
130465 AAATAAATATGATGCTTATGA
1 AAATAAATATGATGCTTATGA
130486 AAA
1 AAA
130489 ATAGATCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.51, C:0.04, G:0.13, T:0.31
Consensus pattern (21 bp):
AAATAAATATGATGCTTATGA
Found at i:134472 original size:25 final size:25
Alignment explanation
Indices: 134424--134490 Score: 86
Period size: 25 Copynumber: 2.7 Consensus size: 25
134414 GAAAATAAAA
134424 ATAAAATAT-TTTAAGTTAAGTTAAT
1 ATAAAATATATTTAAG-TAAGTTAAT
134449 AGTAAAATATATTTAA-TAAGTTAAT
1 A-TAAAATATATTTAAGTAAGTTAAT
134474 ATAAAA-ATATTTTAAGT
1 ATAAAATATA-TTTAAGT
134491 CAATATATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
23 3 0.08
24 10 0.26
25 12 0.32
26 8 0.21
27 5 0.13
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (25 bp):
ATAAAATATATTTAAGTAAGTTAAT
Found at i:134788 original size:39 final size:39
Alignment explanation
Indices: 134745--134820 Score: 111
Period size: 39 Copynumber: 1.9 Consensus size: 39
134735 TATTTTAAAA
134745 AATAATTTAGAAAATTAAT-GTG-AAATAATTTAAGAAATT
1 AATAATTTAGAAAATT-ATGGTGTAAA-AATTTAAGAAATT
*
134784 AATAATTTAGAAAGTTATGGTGTAAAAATTTAAGAAA
1 AATAATTTAGAAAATTATGGTGTAAAAATTTAAGAAA
134821 AATTTAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 2 0.06
39 29 0.85
40 3 0.09
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.34
Consensus pattern (39 bp):
AATAATTTAGAAAATTATGGTGTAAAAATTTAAGAAATT
Found at i:135325 original size:31 final size:31
Alignment explanation
Indices: 135254--135326 Score: 74
Period size: 31 Copynumber: 2.4 Consensus size: 31
135244 ACTCGGGGTA
* * *
135254 ACCACATCTAAATTAAATAAAAACGAAAGTT
1 ACCAAATCTTAATTAAATAAAAACGAAAGTG
* * * * *
135285 ATCATATCTTAATTAACTAAAAATGTAAGTG
1 ACCAAATCTTAATTAAATAAAAACGAAAGTG
135316 ACCAAATCTTA
1 ACCAAATCTTA
135327 TGTATTTTAA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (31 bp):
ACCAAATCTTAATTAAATAAAAACGAAAGTG
Found at i:135480 original size:13 final size:13
Alignment explanation
Indices: 135462--135493 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
135452 CGTAGGATAG
135462 GCGCAATTATAAC
1 GCGCAATTATAAC
135475 GCGCAATTATAAC
1 GCGCAATTATAAC
135488 GCGCAA
1 GCGCAA
135494 AACGCAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (13 bp):
GCGCAATTATAAC
Found at i:136139 original size:33 final size:33
Alignment explanation
Indices: 136097--136160 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
136087 GCCGTGGAAA
136097 TGGAATGCGAGCAGCTTCGGAAGAAAACTAATT
1 TGGAATGCGAGCAGCTTCGGAAGAAAACTAATT
136130 TGGAATGCGAGCAGCTTCGGAAGAAAACTAA
1 TGGAATGCGAGCAGCTTCGGAAGAAAACTAA
136161 CATGATAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.28, T:0.19
Consensus pattern (33 bp):
TGGAATGCGAGCAGCTTCGGAAGAAAACTAATT
Found at i:138541 original size:48 final size:48
Alignment explanation
Indices: 138486--138582 Score: 151
Period size: 48 Copynumber: 2.0 Consensus size: 48
138476 GTTCGGTTCA
*
138486 GGTCATTTTA-GGTTTCGGTTTTATTCGGGTCTATAGTAAGTCGGGTCG
1 GGTCA-TTTAGGGTTTCGGTTTTATTCGGGCCTATAGTAAGTCGGGTCG
* *
138534 GGTCATTTAGGGTTTTGGTTTTATTCGTGCCTATAGTAAGTCGGGTCG
1 GGTCATTTAGGGTTTCGGTTTTATTCGGGCCTATAGTAAGTCGGGTCG
138582 G
1 G
138583 TTCAGGTAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 4 0.09
48 41 0.91
ACGTcount: A:0.14, C:0.12, G:0.32, T:0.41
Consensus pattern (48 bp):
GGTCATTTAGGGTTTCGGTTTTATTCGGGCCTATAGTAAGTCGGGTCG
Found at i:138827 original size:16 final size:16
Alignment explanation
Indices: 138806--138852 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
138796 GTAAATTTAA
138806 TTTGGGTTAATTTCGG
1 TTTGGGTTAATTTCGG
* *
138822 TTTGGGTTACTTTCAG
1 TTTGGGTTAATTTCGG
*
138838 TTT-GGTTAAATTCGG
1 TTTGGGTTAATTTCGG
138853 GTCAGTTTTG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 9 0.35
16 17 0.65
ACGTcount: A:0.15, C:0.09, G:0.28, T:0.49
Consensus pattern (16 bp):
TTTGGGTTAATTTCGG
Found at i:139406 original size:20 final size:20
Alignment explanation
Indices: 139381--139453 Score: 119
Period size: 20 Copynumber: 3.6 Consensus size: 20
139371 TAATACAAAA
*
139381 TCGCAACGCGATACTGAATT
1 TCGCAACGCGATACTGACTT
139401 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
*
139421 TCGCAACGCGATTCTGACTT
1 TCGCAACGCGATACTGACTT
*
139441 TCGCAACGAGATA
1 TCGCAACGCGATA
139454 ATACATAATC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (20 bp):
TCGCAACGCGATACTGACTT
Found at i:140211 original size:24 final size:24
Alignment explanation
Indices: 140184--140237 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
140174 GTATTCGAAA
* *
140184 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTAGTCAATACCCGGAC
* *
140208 TTTGATATTAGTCAATACTCGGAT
1 TTTGATATTAGTCAATACCCGGAC
140232 TTTGAT
1 TTTGAT
140238 GATGTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (24 bp):
TTTGATATTAGTCAATACCCGGAC
Found at i:142704 original size:20 final size:20
Alignment explanation
Indices: 142679--142747 Score: 120
Period size: 20 Copynumber: 3.5 Consensus size: 20
142669 ATTCATTTGA
142679 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
142699 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
* *
142719 CTATCGCAACGAGAAAATCG
1 CTATCGCAACGCGAAAATGG
142739 CTATCGCAA
1 CTATCGCAA
142748 TGAGAAAACC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.36, C:0.26, G:0.22, T:0.16
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:142752 original size:20 final size:20
Alignment explanation
Indices: 142679--142755 Score: 118
Period size: 20 Copynumber: 3.9 Consensus size: 20
142669 ATTCATTTGA
*
142679 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGAGAAAATGG
*
142699 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGAGAAAATGG
*
142719 CTATCGCAACGAGAAAATCG
1 CTATCGCAACGAGAAAATGG
*
142739 CTATCGCAATGAGAAAA
1 CTATCGCAACGAGAAAA
142756 CCGCATTGTG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.16
Consensus pattern (20 bp):
CTATCGCAACGAGAAAATGG
Found at i:144863 original size:20 final size:19
Alignment explanation
Indices: 144840--144907 Score: 82
Period size: 20 Copynumber: 3.5 Consensus size: 19
144830 GAAACTTAAA
144840 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCG-AAATGACT
*
144860 ATCGCAACGCGGAAATGCCT
1 ATCGCAACGC-GAAATGACT
* **
144880 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
144899 ATCGCAACG
1 ATCGCAACG
144908 ACAAAATCGC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
19 14 0.34
20 26 0.63
21 1 0.02
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:144915 original size:14 final size:14
Alignment explanation
Indices: 144896--144986 Score: 83
Period size: 14 Copynumber: 5.9 Consensus size: 14
144886 ATGCGAAATG
144896 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
144910 AAAATCGCAATGCGAAATG
1 AAAATCGCAA--CG--A-C
144929 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
144943 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
144959 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
144975 AAAATCGCAACG
1 AAAATCGCAACG
144987 CGAAACACAA
Statistics
Matches: 64, Mismatches: 4, Indels: 18
0.74 0.05 0.21
Matches are distributed among these distances:
14 31 0.48
15 1 0.02
16 10 0.16
17 2 0.03
18 10 0.16
19 10 0.16
ACGTcount: A:0.48, C:0.23, G:0.18, T:0.11
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:144971 original size:32 final size:33
Alignment explanation
Indices: 144880--144991 Score: 208
Period size: 33 Copynumber: 3.4 Consensus size: 33
144870 GGAAATGCCT
144880 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
144913 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
144946 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
144978 ATCGCAACGCGAAA
1 ATCGCAATGCGAAA
144992 CACAAATCGC
Statistics
Matches: 78, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
32 29 0.37
33 49 0.63
ACGTcount: A:0.47, C:0.22, G:0.19, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:144999 original size:65 final size:66
Alignment explanation
Indices: 144880--145002 Score: 205
Period size: 65 Copynumber: 1.9 Consensus size: 66
144870 GGAAATGCCT
* *
144880 ATCGCAATGCGAAATGAAAATCGCAACGACAAAATCGCAATGCGAAATGAAAATCGCAACGACAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAAATCGCAACGCGAAATCAAAATCGCAACGACAA
144945 A
66 A
144946 ATCGCAATGCGAAATG-AAATCGCAACGACAAAATCGCAACGCGAAA-CACAAATCGCA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAAATCGCAACGCGAAATCA-AAATCGCA
145003 TTGCGATTTT
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
64 1 0.02
65 37 0.69
66 16 0.30
ACGTcount: A:0.47, C:0.24, G:0.18, T:0.11
Consensus pattern (66 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAAATCGCAACGCGAAATCAAAATCGCAACGACAA
A
Found at i:145020 original size:19 final size:19
Alignment explanation
Indices: 144998--145094 Score: 106
Period size: 19 Copynumber: 5.6 Consensus size: 19
144988 GAAACACAAA
144998 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
145017 TCGCGTTGCGATTTT-A--
1 TCGCATTGCGATTTTCATT
145033 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
145050 TCGCATTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
145066 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
145083 TCGCATTGCGAT
1 TCGCATTGCGAT
145095 AGCCATTTCC
Statistics
Matches: 65, Mismatches: 3, Indels: 20
0.74 0.03 0.23
Matches are distributed among these distances:
14 16 0.25
15 4 0.06
16 7 0.11
17 7 0.11
18 4 0.06
19 27 0.42
ACGTcount: A:0.13, C:0.20, G:0.21, T:0.46
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:145039 original size:14 final size:14
Alignment explanation
Indices: 145020--145078 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
145010 TTTCATTTCG
145020 CGTTGCGATTTTAT
1 CGTTGCGATTTTAT
145034 CGTTGCGATTTTCATTT
1 CGTTGCGATTTT-A--T
*
145051 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTAT
145067 CGTTGCGATTTT
1 CGTTGCGATTTT
145079 CATTTCGCAT
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
14 22 0.56
15 1 0.03
16 3 0.08
17 3 0.08
19 10 0.26
ACGTcount: A:0.12, C:0.17, G:0.22, T:0.49
Consensus pattern (14 bp):
CGTTGCGATTTTAT
Found at i:145045 original size:33 final size:33
Alignment explanation
Indices: 145003--145094 Score: 166
Period size: 33 Copynumber: 2.8 Consensus size: 33
144993 ACAAATCGCA
*
145003 TTGCGATTTTCATTTCGCGTTGCGATTTTATCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTATCG
*
145036 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTATCG
145069 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
145095 AGCCATTTCC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.13, C:0.18, G:0.21, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTATCG
Found at i:145133 original size:20 final size:20
Alignment explanation
Indices: 145079--145122 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
145069 TTGCGATTTT
*
145079 CATTT-CGCATTGCGATAGC
1 CATTTCCGCGTTGCGATAGC
*
145098 CATTTCCGCGTTGCGATAGT
1 CATTTCCGCGTTGCGATAGC
145118 CATTT
1 CATTT
145123 TTGTGTTGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (20 bp):
CATTTCCGCGTTGCGATAGC
Found at i:147012 original size:20 final size:20
Alignment explanation
Indices: 146964--147022 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
146954 AATAGTTTCT
** *
146964 GAAAATGAAAATCGCAACAC
1 GAAAATGACTATCGCAACGC
146984 GAAAATGACTATCGCAACGC
1 GAAAATGACTATCGCAACGC
**
147004 GAATTTGACTATCGCAACG
1 GAAAATGACTATCGCAACG
147023 AGAGAATCGC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.17
Consensus pattern (20 bp):
GAAAATGACTATCGCAACGC
Found at i:147311 original size:22 final size:22
Alignment explanation
Indices: 147284--147327 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
147274 GATGGAGATA
147284 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
147306 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
147328 TGAGAGATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:147599 original size:20 final size:20
Alignment explanation
Indices: 147507--147602 Score: 86
Period size: 20 Copynumber: 4.7 Consensus size: 20
147497 GATTATGTAT
* *
147507 TATCGCGTTGCGAAAGTCAG
1 TATCTCGTTGCGATAGTCAG
* * *
147527 AATCGCGTTGCGAAAGTCAG
1 TATCTCGTTGCGATAGTCAG
**
147547 TATCTCGTTGCGATTTTC-G
1 TATCTCGTTGCGATAGTCAG
*
147566 TATTATCGCATTGCGATAGTCAG
1 TA-TCTCG--TTGCGATAGTCAG
147589 TATCTCGTTGCGAT
1 TATCTCGTTGCGAT
147603 TTTGTATTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
19 3 0.05
20 43 0.69
22 13 0.21
23 3 0.05
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (20 bp):
TATCTCGTTGCGATAGTCAG
Found at i:147663 original size:40 final size:42
Alignment explanation
Indices: 147528--147646 Score: 188
Period size: 42 Copynumber: 2.9 Consensus size: 42
147518 GAAAGTCAGA
* *
147528 ATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTCGTATT
1 ATCGCATTGCGATAGTCAGTATCTCGTTGCGATTTTCGTATT
147570 ATCGCATTGCGATAGTCAGTATCTCGTTGCGATTTT-GTATT
1 ATCGCATTGCGATAGTCAGTATCTCGTTGCGATTTTCGTATT
* *
147611 ATCGCATTGCGATAGT-AGTATCGCATTGCGATTTTC
1 ATCGCATTGCGATAGTCAGTATCTCGTTGCGATTTTC
147647 CCAATTCGCG
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
40 17 0.24
41 21 0.29
42 34 0.47
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.39
Consensus pattern (42 bp):
ATCGCATTGCGATAGTCAGTATCTCGTTGCGATTTTCGTATT
Found at i:149040 original size:3 final size:3
Alignment explanation
Indices: 149032--149083 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
149022 AATTTTCACT
149032 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
149080 TTA T
1 TTA T
149084 ATATATATAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:149626 original size:35 final size:32
Alignment explanation
Indices: 149585--149661 Score: 84
Period size: 35 Copynumber: 2.3 Consensus size: 32
149575 ATATAAAATC
*
149585 TAAAATTTAAAAGTCTATAA-TATATAATTTACAAA
1 TAAAATTTAAAAAT-TA-AATTATATAA-TTA-AAA
*
149620 TAAAATTCAAAAAATTAAATTATATAATTAAAA
1 TAAAATT-TAAAAATTAAATTATATAATTAAAA
149653 TAAAATTTA
1 TAAAATTTA
149662 TTAAAATTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
32 1 0.03
33 10 0.27
34 5 0.14
35 16 0.43
36 5 0.14
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.36
Consensus pattern (32 bp):
TAAAATTTAAAAATTAAATTATATAATTAAAA
Found at i:149676 original size:22 final size:21
Alignment explanation
Indices: 149619--149687 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
149609 TAATTTACAA
149619 ATAAAATTCAAAA-AATTAAATT
1 ATAAAATTCAAAATAA--AAATT
* *
149641 ATATAATT-AAAATAAAATTT
1 ATAAAATTCAAAATAAAAATT
*
149661 ATTAAAATTCAAAATAAAGAAAT
1 A-TAAAATTCAAAATAAA-AATT
149684 ATAA
1 ATAA
149688 TTAAATTTCA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
20 5 0.13
21 10 0.26
22 20 0.53
23 3 0.08
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (21 bp):
ATAAAATTCAAAATAAAAATT
Found at i:150277 original size:31 final size:31
Alignment explanation
Indices: 150231--150306 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 31
150221 TTAACTCGGG
* *
150231 GTGACCACATTTTAATTAAATAAAAACAAAA
1 GTGACCATATCTTAATTAAATAAAAACAAAA
* ***
150262 GTGACCCTATCTTAATTAAATAAAAATGTAA
1 GTGACCATATCTTAATTAAATAAAAACAAAA
150293 GTGACCATATCTTA
1 GTGACCATATCTTA
150307 TGTATTTTGA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.30
Consensus pattern (31 bp):
GTGACCATATCTTAATTAAATAAAAACAAAA
Found at i:157596 original size:72 final size:74
Alignment explanation
Indices: 157476--157613 Score: 199
Period size: 72 Copynumber: 1.9 Consensus size: 74
157466 AACAAGATGG
* * * *
157476 GTAACGAGCTTAACGAGCCTAACGAGAAAAGTTGAGCAACAAAATTTTTTAATGAGCACGAGTCA
1 GTAACAAGCTTAACAAGCCTAACGAGAAAAGTCGAGCAACAAAATTTTTTAAAGAGCACGAGTCA
157541 AGTAAAATT
66 AGTAAAATT
** *
157550 GTAACAAGCTTAACAAG-C-AACGAGATGAGTCGAGCAACAAACTTTTTTAAAGAGCACGAGTCA
1 GTAACAAGCTTAACAAGCCTAACGAGAAAAGTCGAGCAACAAAATTTTTTAAAGAGCACGAGTCA
157613 A
66 A
157614 ACATTGCCCA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
72 41 0.72
73 1 0.02
74 15 0.26
ACGTcount: A:0.42, C:0.17, G:0.20, T:0.21
Consensus pattern (74 bp):
GTAACAAGCTTAACAAGCCTAACGAGAAAAGTCGAGCAACAAAATTTTTTAAAGAGCACGAGTCA
AGTAAAATT
Found at i:160223 original size:32 final size:32
Alignment explanation
Indices: 160184--160270 Score: 129
Period size: 32 Copynumber: 2.7 Consensus size: 32
160174 AAGTCAATCG
* *
160184 ATCCAATTTTGACATGACTTGGAAACCAACCA
1 ATCCAATTTTGACATGAATTGAAAACCAACCA
* *
160216 ATCCAATTTTGACCTGAATTGAAAAGCAACCA
1 ATCCAATTTTGACATGAATTGAAAACCAACCA
*
160248 ATCCAATTTTGACCTGAATTGAA
1 ATCCAATTTTGACATGAATTGAA
160271 TTTTCATAGA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.28
Consensus pattern (32 bp):
ATCCAATTTTGACATGAATTGAAAACCAACCA
Found at i:160585 original size:76 final size:76
Alignment explanation
Indices: 160495--160654 Score: 295
Period size: 76 Copynumber: 2.1 Consensus size: 76
160485 TAAAAATTAA
* *
160495 TATT-AAAATGAATATTTATATAAATGATAAAGTATCCAAATCCATGATATAAATAGTTTAACTA
1 TATTAAAAATGAATATTAATATAAATGATAAAGTATCCAAATCCATGATATAAATAGTGTAACTA
160559 TAAATTAAAAT
66 TAAATTAAAAT
160570 TATTAAAAATGAATATTAATATAAATGATAAAGTATCCAAATCCATGATATAAATAGTGTAACTA
1 TATTAAAAATGAATATTAATATAAATGATAAAGTATCCAAATCCATGATATAAATAGTGTAACTA
160635 TAAATTAAAAT
66 TAAATTAAAAT
160646 TATTAAAAA
1 TATTAAAAA
160655 AATCTTTTGA
Statistics
Matches: 82, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
75 4 0.05
76 78 0.95
ACGTcount: A:0.53, C:0.06, G:0.07, T:0.34
Consensus pattern (76 bp):
TATTAAAAATGAATATTAATATAAATGATAAAGTATCCAAATCCATGATATAAATAGTGTAACTA
TAAATTAAAAT
Found at i:161724 original size:29 final size:28
Alignment explanation
Indices: 161692--161753 Score: 76
Period size: 25 Copynumber: 2.3 Consensus size: 28
161682 GTTTAGTGTT
*
161692 TAACGTTTATTTCGTTCTAGTTTGATGTC
1 TAACGTTT-TTTCATTCTAGTTTGATGTC
*
161721 TAACG---TTTCATTCTAGTTTGGTGTC
1 TAACGTTTTTTCATTCTAGTTTGATGTC
161746 TAACGTTT
1 TAACGTTT
161754 CATTCTGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
25 23 0.82
29 5 0.18
ACGTcount: A:0.18, C:0.15, G:0.18, T:0.50
Consensus pattern (28 bp):
TAACGTTTTTTCATTCTAGTTTGATGTC
Found at i:161729 original size:25 final size:25
Alignment explanation
Indices: 161701--161759 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 25
161691 TTAACGTTTA
*
161701 TTTCGTTCTAGTTTGATGTCTAACG
1 TTTCATTCTAGTTTGATGTCTAACG
*
161726 TTTCATTCTAGTTTGGTGTCTAACG
1 TTTCATTCTAGTTTGATGTCTAACG
161751 TTTCATTCT
1 TTTCATTCT
161760 GTAACTTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.15, C:0.17, G:0.17, T:0.51
Consensus pattern (25 bp):
TTTCATTCTAGTTTGATGTCTAACG
Found at i:168710 original size:123 final size:120
Alignment explanation
Indices: 168576--169426 Score: 416
Period size: 112 Copynumber: 7.4 Consensus size: 120
168566 GAACAAATTC
* * *
168576 TCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACTTTTTATGGAAATGCTGATACTGATCTAT
1 TCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAATGCTGATACTAATCTAT
*
168641 CT-CATTCTGTGATAGAATCA-AACAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCT
66 CTGC-TTCTGTGATAAAATCAGAA-AAAGGTTGAACAAGCTCTTCTCATTATGAA---CT
* * * *
168699 TCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGAAAATGTTGATGCTAATCTAT
1 TCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAATGCTGATACTAATCTAT
* * * *
168764 TTGCTTCTGTGATAAAATTATGTAAAAGGTTGAACAAGCTCTTCTCATTGTGAACT
66 CTGCTTCTGTGATAAAATCA-GAAAAAGGTTGAACAAGCTCTTCTCATTATGAACT
* *
168820 TCTT-CTTCTTCAGATGAGTTCTTCTCATTATGAAC-TTTTCTGGAAAAGCTGAT-C-CATC-A-
1 TCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAATGCTGATACTAATCTAT
* ** * * * * ** *
168879 -AG-TGATG-GAT---TTGAGCAAAAGGTTGAAAAAATTCTTCTCATTATGAATT
66 CTGCTTCTGTGATAAAATCAGAAAAAGGTTGAACAAGCTCTTCTCATTATGAACT
* ** *
168928 TCTT-CTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGGCAA---TG-T--TAATC
1 TCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACTTTTTCTGGAAATGCTGATACTAATC
* *** ** * * * **
168986 CATCAAATAATG-GAT---TTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCT
63 TATCTGCTTCTGTGATAAAATCAGAAAAAGGTTGAACAAGCTCTTCTCATTATGAA---CT
* * * *
169043 TCTTCCTTCTTCATATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA---AG-T--TAATCCA-
1 TCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAATGCTGATACTAATCTAT
** * * * * **
169101 -T-C--AAGTGATGAATTCAGGCAAAAGGTTAAACAAATTCTTCTCATTATGAATTTCT
66 CTGCTTCTGTGATAAAATCA-GAAAAAGGTTGAACAAGCTCTTCTCATTATGAA---CT
* * *
169156 TCTTCC-TCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGAAA---TG-T--TAATCCA-
1 TCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAATGCTGATACTAATCTAT
** * * * * *
169213 -T-C--AAGTGATGAATTCGAGCAAAAGGTTAAACAAGTTCTTCTCATTATGAACT
66 CTGCTTCTGTGATAAAATC-AGAAAAAGGTTGAACAAGCTCTTCTCATTATGAACT
* * * *
169265 TCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGAAA---TG-T--TAATCC
1 TCTTC--CTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAATGCTGATACTAATCT
** * * * * *
169324 A--T-C--AAGTGATGAATTCGAGCAAAAGGTTAAACAAGTTCTTCTCATTATGAACT
64 ATCTGCTTCTGTGATAAAATC-AGAAAAAGGTTGAACAAGCTCTTCTCATTATGAACT
* * *
169377 TCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGAAA
1 TCTTC--CTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAA
169427 AAATAATTCA
Statistics
Matches: 651, Mismatches: 52, Indels: 61
0.85 0.07 0.08
Matches are distributed among these distances:
108 50 0.08
109 15 0.02
111 22 0.03
112 304 0.47
113 84 0.13
114 1 0.00
115 5 0.01
116 11 0.02
117 3 0.00
118 1 0.00
119 14 0.02
120 31 0.05
121 6 0.01
123 73 0.11
124 30 0.05
125 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.39
Consensus pattern (120 bp):
TCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAATGCTGATACTAATCTAT
CTGCTTCTGTGATAAAATCAGAAAAAGGTTGAACAAGCTCTTCTCATTATGAACT
Found at i:168935 original size:225 final size:222
Alignment explanation
Indices: 168664--169640 Score: 929
Period size: 224 Copynumber: 4.3 Consensus size: 222
168654 AGAATCAAAC
* ** *
168664 AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTAAACAAATTCTTCTCATTATGAA-TTCTTCTT-C-TCTTCAGATAAGTTCTTCTCATT
* *
168729 ATGAACTTTCTCTGAAAATGTTGATGCTAATCTATTTGCTTCTGTGATAAAATT-ATGTAAAAGG
63 ATGAACTTTCTCTGAAAATGTTGAT-CTAATC-A--T-C-TATGTGAT--AATTGA-GCAAAAGG
* *
168793 TTGAACAAGCTCTTCTCATTGTGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTT
119 TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTT
* *
168858 -TCTGGAAAAGCTGATCCATCAAGTGATGGATTTGAGCA
184 CTCTGGAAAAGTTAATCCATCAAGTGATGGATTTGAGCA
168896 AAAGGTTGAAA-AAATTCTTCTCATTATGAA-T-TTCTTCTTCTTCAGATGACGAGTTCTTCTCA
1 AAAGGTT-AAACAAATTCTTCTCATTATGAATTCTTCTTC-TCTTCAGAT-A--AGTTCTTCTCA
* ** * * **
168958 TTATGAACTCTAC-CTGGCAATGTTAATC-CATCAAATAATG-GAT--TTGAGCAAAAGGTTGAA
61 TTATGAACT-TTCTCTGAAAATGTTGATCTAATCATCT-ATGTGATAATTGAGCAAAAGGTTGAA
* *
169018 CAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCATATGAGTTCTTCTCATTATGAACTTTC
124 CAAGTTCTTCTCATTATGAA---CTTCTT-CTTCTTCAGATGAGTTCTTCTCATTATGAACTTTC
* *
169083 TCTGGAAAAGTTAATCCATCAAGTGAT-GAATTCAGGCA
185 TCTGGAAAAGTTAATCCATCAAGTGATGGATTTGA-GCA
169121 AAAGGTTAAACAAATTCTTCTCATTATGAATTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTA
1 AAAGGTTAAACAAATTCTTCTCATTATGAA-TTCTTCTT-CTCTTCAGATAAGTTCTTCTCATTA
* * * *
169186 TGAACTTTCTCTGGAAATGTTAATC----CATC-AAGTGATGAATTCGAGCAAAAGGTTAAACAA
64 TGAACTTTCTCTGAAAATGTTGATCTAATCATCTATGTGAT-AATT-GAGCAAAAGGTTGAACAA
*
169246 GTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTG
127 GTTCTTCTCATTATGAACTTCTTC-T--TCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
* * *
169311 GAAATGTTAATCCATCAAGTGATGAATTCGAGCA
189 GAAAAGTTAATCCATCAAGTGATGGATTTGAGCA
*
169345 AAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTA
1 AAAGGTTAAACAAATTCTTCTCATTATGAA-TTCTTCTT-CTCTTCAGATAAGTTCTTCTCATTA
* * * *
169410 TGAACTTTCTCTGGAAAA-----A-ATAATTCATC-AAGTGATGAATTCAGGGAAAAGGTTGAAC
64 TGAACTTTCTCT-GAAAATGTTGATCTAA-TCATCTATGTGAT-AATTGA-GCAAAAGGTTGAAC
* * * * **
169468 AAATTCTTCTCATTATGAATTTCTTCTTCCTCTTCAAATGAGTTCTTCTCATTATGAACTCTAAC
125 AAGTTCTTCTCATTATGAA---CTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTC
* ** * * ** * *
169533 TGGCACTGTTGATCCACCGGGTGATGAATTTAAGCA
187 TGGAAAAGTTAATCCATCAAGTGATGGATTTGAGCA
* * * *
169569 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTAAACAAATTCTTCTCATTATGAA-TTCTTCTT-C-TCTTCAGATAAGTTCTTCTCATT
169634 ATGAACT
63 ATGAACT
169641 CGACCTGGAA
Statistics
Matches: 646, Mismatches: 60, Indels: 85
0.82 0.08 0.11
Matches are distributed among these distances:
220 34 0.05
221 5 0.01
222 9 0.01
223 7 0.01
224 327 0.51
225 159 0.25
227 9 0.01
228 26 0.04
229 9 0.01
230 2 0.00
231 31 0.05
232 26 0.04
233 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (222 bp):
AAAGGTTAAACAAATTCTTCTCATTATGAATTCTTCTTCTCTTCAGATAAGTTCTTCTCATTATG
AACTTTCTCTGAAAATGTTGATCTAATCATCTATGTGATAATTGAGCAAAAGGTTGAACAAGTTC
TTCTCATTATGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGT
TAATCCATCAAGTGATGGATTTGAGCA
Found at i:169059 original size:24 final size:23
Alignment explanation
Indices: 169024--169068 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
169014 TGAACAAATT
*
169024 CTTCTCATTATGAATTTCTTCTTC
1 CTTCTCATTATG-AGTTCTTCTTC
169048 CTTCTTCA-TATGAGTTCTTCT
1 CTTC-TCATTATGAGTTCTTCT
169069 CATTATGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 8 0.42
25 3 0.16
ACGTcount: A:0.16, C:0.24, G:0.07, T:0.53
Consensus pattern (23 bp):
CTTCTCATTATGAGTTCTTCTTC
Found at i:169477 original size:336 final size:336
Alignment explanation
Indices: 168664--169661 Score: 1273
Period size: 336 Copynumber: 2.9 Consensus size: 336
168654 AGAATCAAAC
*
168664 AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * * * * *
168729 ATGAACTTTCTCTGAAAATGTTGATGCTAATCTATTTGCTTC-TGTGATAAAATT-ATGTAAAAG
66 ATGAACTTTCTCTGGAAA-----A----AA--TAATT-CATCAAGTGAT-GAATTCAGGCAAAAG
** * *
168792 GTTGAACAAGCTCTTCTCATTGTGAA---CTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGAA
118 GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAA
* * * *
168854 CTTTTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAAA-AAATTCTTCTC
183 CTTTTCTGGAAATGTTGATCCATCAAGTGATGAATTTGAGCAAAAGGTT-AAACAAGTTCTTCTC
* *
168918 ATTATGAA--T-TTCTTCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGGCAATG
247 ATTATGAACTTCTTCTTCCTCTTCAGAT-A--AGTTCTTCTCATTATGAACTCTACCTGGAAATG
* *
168980 TTAATCCATCAAATAATGGATTTGAGCA
309 TTAATCCATCAAATAATGAATTCGAGCA
* * *
169008 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCATATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
** * *
169073 ATGAACTTTCTCTGGAAAAGTTAATCCATCAAGTGATGAATTCAGGCAAAAGGTTAAACAAATTC
66 ATGAACTTTCTCTGGAAAAAATAATTCATCAAGTGATGAATTCAGGCAAAAGGTTGAACAAATTC
*
169138 TTCTCATTATGAATTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGGAAA
131 TTCTCATTATGAATTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTT-TCTGGAAA
* *
169203 TGTTAATCCATCAAGTGATGAATTCGAGCAAAAGGTTAAACAAGTTCTTCTCATTATGAACTTCT
195 TGTTGATCCATCAAGTGATGAATTTGAGCAAAAGGTTAAACAAGTTCTTCTCATTATGAACTTCT
* * *
169268 TCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACT-TTCTCTGGAAATGTTAATCCATCAAGTG
260 TCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTCTAC-CTGGAAATGTTAATCCATCAAATA
169332 ATGAATTCGAGCA
324 ATGAATTCGAGCA
* *
169345 AAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATAAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
169409 ATGAACTTTCTCTGGAAAAAATAATTCATCAAGTGATGAATTCAGGGAAAAGGTTGAACAAATTC
66 ATGAACTTTCTCTGGAAAAAATAATTCATCAAGTGATGAATTCAGGCAAAAGGTTGAACAAATTC
* ** * *
169474 TTCTCATTATGAATTTCTTCTTCCTCTTCAAATGAGTTCTTCTCATTATGAACTCTAACTGGCAC
131 TTCTCATTATGAATTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACT-TTTCTGGAAA
* ** * * *
169539 TGTTGATCCACCGGGTGATGAATTTAAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCT
195 TGTTGATCCATCAAGTGATGAATTTGAGCAAAAGGTTAAACAAGTTCTTCTCATTATGAACTTCT
* * *
169604 TCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGG-AATGTTGATCCAT
260 TCTTCC-TCTTCAGATAAGTTCTTCTCATTATGAACTCTACCTGGAAATGTTAATCCAT
169662 TGAATGATGG
Statistics
Matches: 579, Mismatches: 61, Indels: 36
0.86 0.09 0.05
Matches are distributed among these distances:
332 7 0.01
333 37 0.06
336 256 0.44
337 182 0.31
338 1 0.00
339 3 0.01
340 15 0.03
344 78 0.13
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (336 bp):
AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTTCTCTGGAAAAAATAATTCATCAAGTGATGAATTCAGGCAAAAGGTTGAACAAATTC
TTCTCATTATGAATTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAACTTTTCTGGAAAT
GTTGATCCATCAAGTGATGAATTTGAGCAAAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTT
CTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTCTACCTGGAAATGTTAATCCATCAAATAAT
GAATTCGAGCA
Done.