Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008593.1 Hibiscus syriacus cultivar Beakdansim tig00111542_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1058705
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
File 1 of 5
Found at i:1421 original size:20 final size:20
Alignment explanation
Indices: 1350--1429 Score: 72
Period size: 20 Copynumber: 3.9 Consensus size: 20
1340 AGAACCCCAT
* **
1350 GGGGGTATC-GTTCCCTGTG
1 GGGGGAATCGGTTCCCTCAG
*
1369 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TC-AG
1392 GGGGGAATCGGTTCCCTCAG
1 GGGGGAATCGGTTCCCTCAG
* *
1412 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
1430 TGCACAAAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
19 8 0.16
20 20 0.40
21 5 0.10
22 4 0.08
23 13 0.26
ACGTcount: A:0.14, C:0.25, G:0.38, T:0.24
Consensus pattern (20 bp):
GGGGGAATCGGTTCCCTCAG
Found at i:8259 original size:18 final size:19
Alignment explanation
Indices: 8222--8259 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
8212 ATATTGGAAG
*
8222 AAAAATGTGTCGATACATTT
1 AAAAAAGTGTCGA-ACATTT
8242 AAAAAAGTGTCG-ACATTT
1 AAAAAAGTGTCGAACATTT
8260 TACACATCGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (19 bp):
AAAAAAGTGTCGAACATTT
Found at i:8430 original size:183 final size:184
Alignment explanation
Indices: 7731--8580 Score: 1532
Period size: 183 Copynumber: 4.7 Consensus size: 184
7721 CTTTCAACAT
**
7731 ATTATAATAAAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
7796 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
*
7861 ATTGTGTCGATATAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 ATTGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
7915 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTAT-AATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
7979 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA-TGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
*
8043 ATTGTGTCGATATAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 ATTGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
8097 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTAT-AATATA-CGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
8160 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
*
8225 AATGTGTCGATAC-ATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 ATTGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
* *
8278 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
**
8343 GGTCTACAACCGGTATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
8408 A-TGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
131 ATTGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
* * *
8461 ATTATAATGTAATATATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
**
8526 GGTCTACAACCGGTATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA
8581 CCATTAAAAA
Statistics
Matches: 653, Mismatches: 9, Indels: 9
0.97 0.01 0.01
Matches are distributed among these distances:
181 152 0.23
182 145 0.22
183 319 0.49
184 37 0.06
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (184 bp):
ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
ATTGTGTCGATACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:8447 original size:364 final size:366
Alignment explanation
Indices: 7731--8580 Score: 1528
Period size: 364 Copynumber: 2.3 Consensus size: 366
7721 CTTTCAACAT
**
7731 ATTATAATAAAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
7796 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
*
7861 ATTGTGTCGATATAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGTA
131 AATGTGTCGATATAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGTA
* *
7926 ATAGATAATTTTGTAATATAACCGGTATAATATACCGGTCTTATGCGCGAATAGGTCTACAACCT
196 ATAGATAATTTTGTAATATAACCGGTATAATATACCGGTCTTATGAGCGAATAGGTCTACAACCG
*
7991 ATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATGGAAGAAAATTGTGTCGATAT
261 ATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATGGAAGAAAATTGTGTCGATAC
8056 AATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
326 AATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
8097 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTAT-AATATA-CGGTCTTATGCGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
8160 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
*
8225 AATGTGTCGATA-CATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGTA
131 AATGTGTCGATATAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGTA
*
8289 ATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACC
196 ATAGATAATTTTGTAATATAACCGGTAT-AATATACCGGTCTTATGAGCGAATAGGTCTACAACC
*
8354 GGTATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAAA-TGTGTCGAT
260 GATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA-TGGAAGAAAATTGTGTCGAT
8418 ACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
324 ACAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
* * *
8461 ATTATAATGTAATATATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATA
1 ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
**
8526 GGTCTACAACCGGTATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA
66 GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATA
8581 CCATTAAAAA
Statistics
Matches: 466, Mismatches: 14, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
363 79 0.17
364 259 0.56
365 22 0.05
366 106 0.23
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (366 bp):
ATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTCTTATGCGCGAATA
GGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATTGGAAGAAA
AATGTGTCGATATAATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATAATTATAATGTA
ATAGATAATTTTGTAATATAACCGGTATAATATACCGGTCTTATGAGCGAATAGGTCTACAACCG
ATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATATGGAAGAAAATTGTGTCGATAC
AATTTAAAAAAGTGTCGACATTTTACACATCGGAACCCATA
Found at i:11156 original size:23 final size:23
Alignment explanation
Indices: 11125--11187 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
11115 ATAGGTAAAC
*
11125 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
11148 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
11171 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
11188 ATGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:11195 original size:23 final size:23
Alignment explanation
Indices: 11125--11197 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
11115 ATAGGTAAAC
* * **
11125 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
11148 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
11171 ATATAATGTAATAGGTAAT-GGTT
1 ATATAATGTAATAGGT-ATCGGTT
11194 ATAT
1 ATAT
11198 GTAAAGTGTC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 42 0.95
24 2 0.05
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:14627 original size:135 final size:137
Alignment explanation
Indices: 14445--14694 Score: 308
Period size: 141 Copynumber: 1.8 Consensus size: 137
14435 CCACCTGTTT
* * * * * *
14445 TACTTGCCTTTTAGCTCTAGAATGTTAAAGAAAACCTTATACAATTATCA-CC-GTCTTAAGAA-
1 TACTTGCCTTCTAGCTCAAGAATGTTAAACAAAACCATAGACAATTATCAGCCAGTCCTAAGAAC
*
14507 CTTCATAAAGAATTTGAAGAACTATGTGGAAACGATTGCAGAAAAATTTGTCACCAAAACCCCAA
66 CTT-ATAAAGAATTTGAAGAACTACGTGGAAACGATTGCAGAAAAATTTGTCACCAAAACCCCAA
14572 GAGATGCC
130 GAGATGCC
* * *
14580 TACTTGCCTTCTAGTTCAAGAATGTTAAACAAAACCATAGACGATTATGAGCCTGAAAGTCCTAA
1 TACTTGCCTTCTAGCTCAAGAATGTTAAACAAAACCATAGACAATTATCAGCC----AGTCCTAA
* * * *
14645 GAACCTTATACAGTATTTGAAGAACTACGTGGACACGATTGCAGCAAAAT
62 GAACCTTATAAAGAATTTGAAGAACTACGTGGAAACGATTGCAGAAAAAT
14695 ACCCTTTCTG
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
135 42 0.45
136 2 0.02
141 47 0.50
142 3 0.03
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (137 bp):
TACTTGCCTTCTAGCTCAAGAATGTTAAACAAAACCATAGACAATTATCAGCCAGTCCTAAGAAC
CTTATAAAGAATTTGAAGAACTACGTGGAAACGATTGCAGAAAAATTTGTCACCAAAACCCCAAG
AGATGCC
Found at i:26716 original size:3 final size:3
Alignment explanation
Indices: 26710--26770 Score: 104
Period size: 3 Copynumber: 20.3 Consensus size: 3
26700 TTTTTTTGTA
**
26710 TAT TAT TAT TAT CGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26758 TAT TAT TAT TAT T
1 TAT TAT TAT TAT T
26771 TAATTTACAT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:26915 original size:25 final size:25
Alignment explanation
Indices: 26886--26982 Score: 153
Period size: 25 Copynumber: 3.9 Consensus size: 25
26876 CCCAACCCAT
*
26886 CAGATTAGGGTTTCAAACCCTAAAG
1 CAGATTAGGGTTTCAAACCCTAAAA
26911 CAGATTAGGGTTTCAAACCCTAAAA
1 CAGATTAGGGTTTCAAACCCTAAAA
26936 TC-GATTAGGGTTTCAAACCCTAAAA
1 -CAGATTAGGGTTTCAAACCCTAAAA
*
26961 CAAATTAGGGTTTC-AACCCTAA
1 CAGATTAGGGTTTCAAACCCTAA
26983 TCCCCTCAAC
Statistics
Matches: 68, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
24 9 0.13
25 58 0.85
26 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (25 bp):
CAGATTAGGGTTTCAAACCCTAAAA
Found at i:33697 original size:12 final size:12
Alignment explanation
Indices: 33661--33784 Score: 73
Period size: 12 Copynumber: 10.4 Consensus size: 12
33651 AAGATCCATC
33661 AAAAA-CAAAG-
1 AAAAAGCAAAGA
*
33671 AAAAATCAAAGA
1 AAAAAGCAAAGA
33683 GAAAAGAGCAAAGA
1 -AAAA-AGCAAAGA
*
33697 AAAAAACAAAGA
1 AAAAAGCAAAGA
* *
33709 GCAGAGAG-AAA-A
1 --AAAAAGCAAAGA
* *
33721 AAAAATCAAAGC
1 AAAAAGCAAAGA
33733 AAAAA-CAAAG-
1 AAAAAGCAAAGA
*
33743 AAAAATCAAAG-
1 AAAAAGCAAAGA
*
33754 CAAAAGTCAAAGA
1 AAAAAG-CAAAGA
33767 AAAAAGCAAAGA
1 AAAAAGCAAAGA
33779 ACAAAA
1 A-AAAA
33785 AGAAGACAAA
Statistics
Matches: 90, Mismatches: 12, Indels: 21
0.73 0.10 0.17
Matches are distributed among these distances:
10 13 0.14
11 22 0.24
12 25 0.28
13 20 0.22
14 10 0.11
ACGTcount: A:0.72, C:0.10, G:0.15, T:0.03
Consensus pattern (12 bp):
AAAAAGCAAAGA
Found at i:33720 original size:21 final size:19
Alignment explanation
Indices: 33685--33743 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 19
33675 ATCAAAGAGA
33685 AAAGAGCAAAGAAAAAAAC
1 AAAGAGCAAAGAAAAAAAC
* *
33704 AAAGAGCAGAGAGAAAAA-
1 AAAGAGCAAAGAAAAAAAC
* *
33722 AAA-ATCAAAG-CAAAAAC
1 AAAGAGCAAAGAAAAAAAC
33739 AAAGA
1 AAAGA
33744 AAAATCAAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
16 5 0.15
17 8 0.24
18 4 0.12
19 16 0.48
ACGTcount: A:0.71, C:0.10, G:0.17, T:0.02
Consensus pattern (19 bp):
AAAGAGCAAAGAAAAAAAC
Found at i:33733 original size:22 final size:22
Alignment explanation
Indices: 33660--33777 Score: 83
Period size: 22 Copynumber: 5.0 Consensus size: 22
33650 GAAGATCCAT
*
33660 CAAAAACAAAGAAAAATCAAAG
1 CAAAAACAAAAAAAAATCAAAG
* *
33682 AGAAAAGAGCAAAGAAAAAAACAAAGAG
1 -CAAAA-A-CAAA-AAAAAATC-AA-AG
* * *
33710 CAGAGAGAAAAAAAAATCAAAG
1 CAAAAACAAAAAAAAATCAAAG
*
33732 CAAAAACAAAGAAAAATCAAAG
1 CAAAAACAAAAAAAAATCAAAG
* *
33754 CAAAAGTCAAAGAAAAAAGCAAAG
1 CAAAA-ACAAA-AAAAAATCAAAG
33778 AACAAAAAGA
Statistics
Matches: 73, Mismatches: 15, Indels: 13
0.72 0.15 0.13
Matches are distributed among these distances:
22 25 0.34
23 10 0.14
24 18 0.25
25 7 0.10
26 7 0.10
27 4 0.05
28 2 0.03
ACGTcount: A:0.70, C:0.11, G:0.15, T:0.03
Consensus pattern (22 bp):
CAAAAACAAAAAAAAATCAAAG
Found at i:34957 original size:4 final size:4
Alignment explanation
Indices: 34948--35013 Score: 82
Period size: 4 Copynumber: 17.0 Consensus size: 4
34938 AAGAGTATAC
* * * *
34948 ACAT ACAT ACAT ACGT ATAT ACAT ACGT ACAT ACAT ACAT ATAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
34996 ACAT ACAT --AT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT
35014 GATACATAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
2 2 0.04
4 50 0.96
ACGTcount: A:0.47, C:0.21, G:0.03, T:0.29
Consensus pattern (4 bp):
ACAT
Found at i:35446 original size:35 final size:36
Alignment explanation
Indices: 35367--35464 Score: 171
Period size: 36 Copynumber: 2.8 Consensus size: 36
35357 GATTTTTCTA
35367 AAAACAAATTTTGTCTCGCTTGAGACAATTTATTTC
1 AAAACAAATTTTGTCTCGCTTGAGACAATTTATTTC
35403 AAAACAAATTTTGTCTCGCTTGAGACAATTTA-TTC
1 AAAACAAATTTTGTCTCGCTTGAGACAATTTATTTC
**
35438 AAAACAAATTTTGTCTCATTTGAGACA
1 AAAACAAATTTTGTCTCGCTTGAGACA
35465 TTTTCCCTTT
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
35 28 0.47
36 32 0.53
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (36 bp):
AAAACAAATTTTGTCTCGCTTGAGACAATTTATTTC
Found at i:35793 original size:101 final size:98
Alignment explanation
Indices: 35587--35820 Score: 251
Period size: 101 Copynumber: 2.3 Consensus size: 98
35577 TGAGAATTTT
** * *
35587 AAAACAAATTGCGTCTCGCTTGAGACATTTTTCCTTTGAGATACAAATTTTGAATTTGATTCACT
1 AAAACAAATTTTGTCTCGCTTGAGACATTTTCCCTTTGAGATACAAATTTCGAATTTGATTCACT
*
35652 AAAAACAAAATCTCACCTTAGATTGTTGTTTCTTTC
66 AAAAACAAAATCTCACCTTAGA-T-TCGTTTC-TTC
* * *
35688 AAAACAAATTTTGTCTCGCTTGAGACCTTTTCCCTTTGAGATCCAAATTTCGAATTTGTTTCAC-
1 AAAACAAATTTTGTCTCGCTTGAGACATTTTCCCTTTGAGATACAAATTTCGAATTTGATTCACT
*
35752 ATTAAACAAAGTTGATCTCA-CTTGAGA-TCGTTTC-TC
66 A-AAAACAAA----ATCTCACCTT-AGATTCGTTTCTTC
* *
35788 AAAAACAAACTTTGTCTCGCTTGAGACAATTTC
1 -AAAACAAATTTTGTCTCGCTTGAGACATTTTC
35821 TCTAAAAACA
Statistics
Matches: 114, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
100 3 0.03
101 93 0.82
102 6 0.05
104 3 0.03
105 9 0.08
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (98 bp):
AAAACAAATTTTGTCTCGCTTGAGACATTTTCCCTTTGAGATACAAATTTCGAATTTGATTCACT
AAAAACAAAATCTCACCTTAGATTCGTTTCTTC
Found at i:35794 original size:35 final size:33
Alignment explanation
Indices: 35767--35883 Score: 137
Period size: 36 Copynumber: 3.4 Consensus size: 33
35757 ACAAAGTTGA
35767 TCTCACTTGAGATCGTTTCTCAAAAACAAACTTTG
1 TCTCACTTGAGA-C-TTTCTCAAAAACAAACTTTG
* *
35802 TCTCGCTTGAGACAATTTCTCTAAAAACAAATTTTG
1 TCTCACTTGAGAC--TTTCTC-AAAAACAAACTTTG
* * *
35838 TCTCATTTGAGACTATATCAAAAACAAACTTTG
1 TCTCACTTGAGACTTTCTCAAAAACAAACTTTG
35871 TCTCA-TTGAGACT
1 TCTCACTTGAGACT
35884 ATATCTTAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
32 8 0.11
33 18 0.25
34 5 0.07
35 17 0.24
36 24 0.33
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (33 bp):
TCTCACTTGAGACTTTCTCAAAAACAAACTTTG
Found at i:35838 original size:36 final size:36
Alignment explanation
Indices: 35782--35940 Score: 125
Period size: 33 Copynumber: 4.5 Consensus size: 36
35772 CTTGAGATCG
*
35782 TTTCTC-AAAAACAAACTTTGTCTCGCTTGAGACAA
1 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAA
**
35817 TTTCTCTAAAAACAAATTTTGTCTCATTTGAGAC--
1 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAA
* * * * *
35851 TATATC-AAAAACAAACTTTGTCTC-ATTGAGACTA
1 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAA
* * *
35885 TATCT-T-AAAGCAAATTTCGTCTCGCTTGAGACATCA
1 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACA--A
* *
35921 TTTTCTCTCAATACAAATTT
1 -TTTCTCTAAAAACAAATTT
35941 CAAGGTTGTT
Statistics
Matches: 98, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
32 7 0.07
33 31 0.32
34 15 0.15
35 6 0.06
36 25 0.26
37 4 0.04
38 1 0.01
39 9 0.09
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.36
Consensus pattern (36 bp):
TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGACAA
Found at i:36199 original size:28 final size:28
Alignment explanation
Indices: 36162--36262 Score: 136
Period size: 28 Copynumber: 3.7 Consensus size: 28
36152 ACAGTTTCTC
*
36162 TTGAAAAAAATCTTTGAGTTTGTTCCTT
1 TTGAATAAAATCTTTGAGTTTGTTCCTT
* *
36190 TAGAATAAAATCTTGGAGTTTGTTCCTT
1 TTGAATAAAATCTTTGAGTTTGTTCCTT
*
36218 TTGAATAAATATCTTTGAG-TTGTTTCTT
1 TTGAATAAA-ATCTTTGAGTTTGTTCCTT
36246 TTG-A-AAAATCTTTGAGT
1 TTGAATAAAATCTTTGAGT
36263 CTATTTATTT
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.14
26 3 0.05
27 1 0.02
28 44 0.68
29 8 0.12
ACGTcount: A:0.29, C:0.09, G:0.16, T:0.47
Consensus pattern (28 bp):
TTGAATAAAATCTTTGAGTTTGTTCCTT
Found at i:36277 original size:25 final size:24
Alignment explanation
Indices: 36223--36277 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
36213 TCCTTTTGAA
* * *
36223 TAAATATCTTTGAGTTGTTTCTTT
1 TAAAAATCTTTGAGTTATTTATTT
36247 TGAAAAATCTTTGAGTCTATTTATTT
1 T-AAAAATCTTTGAGT-TATTTATTT
36273 TAAAA
1 TAAAA
36278 CGATTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
24 1 0.04
25 17 0.65
26 8 0.31
ACGTcount: A:0.31, C:0.07, G:0.11, T:0.51
Consensus pattern (24 bp):
TAAAAATCTTTGAGTTATTTATTT
Found at i:36370 original size:147 final size:146
Alignment explanation
Indices: 36122--36469 Score: 587
Period size: 147 Copynumber: 2.4 Consensus size: 146
36112 ATTTTGAATC
36122 TTTTAAAACGATTTTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAAAAAATCTTTGAGTTTGTTC
1 TTTTAAAACGATTTTTTTGTCTCTCTTGAGACAGTTTCTCTTG-AAAAAATCTTTGAGTTTGTTC
*
36187 CTTTAGAATAAAATCTTGGAGTTTGTTCCTTTTGAATAAATATCTTTGAGTTGTTTCTTTTGAAA
65 CTTTAGAATAAAAACTTGGAGTTTGTTCCTTTTGAATAAATATCTTTGAGTTGTTTC-TTTGAAA
36252 AATCTTTGAGTCTATTTA
129 AATCTTTGAGTCTATTTA
36270 TTTTAAAACGATTTTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAAAAATCTTTGAGTTTGTTCC
1 TTTTAAAACGATTTTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAAAAATCTTTGAGTTTGTTCC
36335 TTTAGAATAAAAACTTGGAGTTTGTTCCTTTTGAATAAATATCTTTGAGTTGTTTCTTTGAAAAA
66 TTTAGAATAAAAACTTGGAGTTTGTTCCTTTTGAATAAATATCTTTGAGTTGTTTCTTTGAAAAA
36400 TCTTTGAGTCTATTTA
131 TCTTTGAGTCTATTTA
* *** * *
36416 TTTTGAAAC-AAAGTTTTGTCTCTCTTGAGACA-ATT-TCGTG-AAAAATCTTTGAGT
1 TTTTAAAACGATTTTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAAAAATCTTTGAGT
36470 CTGAAACAAG
Statistics
Matches: 193, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
142 14 0.07
143 4 0.02
144 2 0.01
145 20 0.10
146 33 0.17
147 77 0.40
148 43 0.22
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.47
Consensus pattern (146 bp):
TTTTAAAACGATTTTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAAAAATCTTTGAGTTTGTTCC
TTTAGAATAAAAACTTGGAGTTTGTTCCTTTTGAATAAATATCTTTGAGTTGTTTCTTTGAAAAA
TCTTTGAGTCTATTTA
Found at i:36404 original size:24 final size:27
Alignment explanation
Indices: 36310--36408 Score: 116
Period size: 28 Copynumber: 3.7 Consensus size: 27
36300 ACAGTTTCTC
36310 TTGAA-AAAATCTTTGAGTTTGTTCCT
1 TTGAATAAAATCTTTGAGTTTGTTCCT
* *
36336 TTAGAATAAAAACTTGGAGTTTGTTCCTT
1 TT-GAATAAAATCTTTGAGTTTGTTCC-T
*
36365 TTGAATAAATATCTTTGAG-TTGTTTCT
1 TTGAATAAA-ATCTTTGAGTTTGTTCCT
36392 TTG-A-AAAATCTTTGAGT
1 TTGAATAAAATCTTTGAGT
36409 CTATTTATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
24 9 0.14
25 3 0.05
26 3 0.05
27 7 0.11
28 31 0.49
29 10 0.16
ACGTcount: A:0.29, C:0.09, G:0.16, T:0.45
Consensus pattern (27 bp):
TTGAATAAAATCTTTGAGTTTGTTCCT
Found at i:36420 original size:26 final size:24
Alignment explanation
Indices: 36375--36423 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
36365 TTGAATAAAT
*
36375 ATCTTTGAGTTGTTTCTTTGAAAA
1 ATCTTTGAGTTATTTCTTTGAAAA
*
36399 ATCTTTGAGTCTATTTATTTTGAAA
1 ATCTTTGAGT-TATTT-CTTTGAAA
36424 CAAAGTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.48
25 4 0.19
26 7 0.33
ACGTcount: A:0.27, C:0.08, G:0.14, T:0.51
Consensus pattern (24 bp):
ATCTTTGAGTTATTTCTTTGAAAA
Found at i:36544 original size:27 final size:27
Alignment explanation
Indices: 36508--36572 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
36498 ATTTGTGAAA
*
36508 AAAAAATCTTTGAGATTGTTTCTTTTG
1 AAAAAATCTTTGAGATTGTTTCTTTGG
*
36535 AAAAAATCTTTGAGTTTGTTTCTTTGG
1 AAAAAATCTTTGAGATTGTTTCTTTGG
*
36562 AACAAAT-TTTG
1 AAAAAATCTTTG
36573 TCTCTCTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
26 4 0.11
27 31 0.89
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (27 bp):
AAAAAATCTTTGAGATTGTTTCTTTGG
Found at i:36622 original size:62 final size:63
Alignment explanation
Indices: 36520--36656 Score: 197
Period size: 62 Copynumber: 2.2 Consensus size: 63
36510 AAAATCTTTG
* * *
36520 AGATTGTTTCTTTTGAAAAAATCTTTGAGTTTGTTTCTTTGG-AAC-AAATTTTGTCTCTCTTA
1 AGATAGTTTC-TTTAAAAAAATCTTTGAGTTTGTTTCTTTGGAAACAAAATTTTGTATCTCTTA
*
36582 AGATAGTTTCTTTAAACAAAATCTTTGAGTTTGTTTCTTTGGAAACAAAATTTTGTATCTCTTG
1 AGATAGTTTCTTTAAA-AAAATCTTTGAGTTTGTTTCTTTGGAAACAAAATTTTGTATCTCTTA
*
36646 AGACAGTTTCT
1 AGATAGTTTCT
36657 CTTGAATTAA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
61 5 0.07
62 34 0.51
63 3 0.04
64 25 0.37
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.47
Consensus pattern (63 bp):
AGATAGTTTCTTTAAAAAAATCTTTGAGTTTGTTTCTTTGGAAACAAAATTTTGTATCTCTTA
Found at i:36669 original size:64 final size:61
Alignment explanation
Indices: 36525--36673 Score: 199
Period size: 64 Copynumber: 2.4 Consensus size: 61
36515 CTTTGAGATT
* *
36525 GTTTCTTTTGAAAAAATCTTTGAGTTTGTTTCTTTGGAACAAATTTTGTCTCTCTTAAGATA
1 GTTTC-TTTGAAAAAATCTTTGAGTTTGTTTCTTTGGAACAAATTTTGTATCTCTTAAGACA
* *
36587 GTTTCTTTAAACAAAATCTTTGAGTTTGTTTCTTTGGAAACAAAATTTTGTATCTCTTGAGACA
1 GTTTCTTTGAA-AAAATCTTTGAGTTTGTTTCTTTGG-AAC-AAATTTTGTATCTCTTAAGACA
**
36651 GTTTCTCTTGAATTAATCTTTGA
1 GTTTCT-TTGAAAAAATCTTTGA
36674 ATATGTTCAT
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
61 5 0.07
62 30 0.39
63 3 0.04
64 34 0.45
65 4 0.05
ACGTcount: A:0.27, C:0.12, G:0.14, T:0.47
Consensus pattern (61 bp):
GTTTCTTTGAAAAAATCTTTGAGTTTGTTTCTTTGGAACAAATTTTGTATCTCTTAAGACA
Found at i:36858 original size:120 final size:117
Alignment explanation
Indices: 36720--36941 Score: 277
Period size: 117 Copynumber: 1.9 Consensus size: 117
36710 TTAACAAAAT
* * *
36720 CATCTTTGAGTCTATTTCTTTAAAAACAAATGTTGTCTCTCTT-GAGACAGTTTCTAATGAAAAA
1 CATCTTTGAGTCTATTTCTTTAAAAACAAAT-TT-TATCTCTTAAAGACAATTTCTAATGAAAAA
36784 CTAA-CTTTTGAGATTGTTTCATTTGAAACAAATTTGGTCTCACTTAAGATGGGATC
64 --AATC-TTTGAGATTGTTTCATTTGAAACAAATTTGGTCTCACTTAAGATGGGATC
* ** ** *
36840 CATCTTTGAGTCTGTTTCTTTTGAAACAAATTTTATCTCTTAAAGACAATTTCTTTTGGAAAAAA
1 CATCTTTGAGTCTATTTCTTTAAAAACAAATTTTATCTCTTAAAGACAATTTCTAATGAAAAAAA
* * *
36905 TCTTTGAGTTTGTTTCCTTTGAAACAAATTTTGTCTC
66 TCTTTGAGATTGTTTCATTTGAAACAAATTTGGTCTC
36942 TCGAGACAAC
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
117 34 0.39
118 8 0.09
119 18 0.20
120 28 0.32
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (117 bp):
CATCTTTGAGTCTATTTCTTTAAAAACAAATTTTATCTCTTAAAGACAATTTCTAATGAAAAAAA
TCTTTGAGATTGTTTCATTTGAAACAAATTTGGTCTCACTTAAGATGGGATC
Found at i:36942 original size:63 final size:61
Alignment explanation
Indices: 36841--36963 Score: 174
Period size: 63 Copynumber: 2.0 Consensus size: 61
36831 GATGGGATCC
* *
36841 ATCTTTGAGTCTGTTTCTTTTGAAACAAATTTTATCTCTTAAAGACAATTTCTTTTGGAAAAA
1 ATCTTTGAGTCTGTTTCCTTTGAAACAAATTTTATCTC-TAAAGACAACTTCTTTT-GAAAAA
* * **
36904 ATCTTTGAGTTTGTTTCCTTTGAAACAAATTTTGTCTCTCGAGACAACTTCTTTTGAAAA
1 ATCTTTGAGTCTGTTTCCTTTGAAACAAATTTTATCTCTAAAGACAACTTCTTTTGAAAA
36964 TACCCACATT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
61 5 0.09
62 14 0.26
63 35 0.65
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (61 bp):
ATCTTTGAGTCTGTTTCCTTTGAAACAAATTTTATCTCTAAAGACAACTTCTTTTGAAAAA
Found at i:37008 original size:40 final size:40
Alignment explanation
Indices: 36945--37024 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 40
36935 TTGTCTCTCG
36945 AGACAACTTCTTTTGAAAATACCCACATTTGAGATCGTTT
1 AGACAACTTCTTTTGAAAATACCCACATTTGAGATCGTTT
* * *
36985 AGACAATTTCTTTT-AAAACTACCCACCTTTGAGATTGTTT
1 AGACAACTTCTTTTGAAAA-TACCCACATTTGAGATCGTTT
37025 TTATTAAAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 4 0.11
40 32 0.89
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (40 bp):
AGACAACTTCTTTTGAAAATACCCACATTTGAGATCGTTT
Found at i:37140 original size:15 final size:15
Alignment explanation
Indices: 37117--37160 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
37107 TTTTGAGTCG
*
37117 TTTCACTTGAAACAT
1 TTTCTCTTGAAACAT
37132 TTTCTCTTGAAACAT
1 TTTCTCTTGAAACAT
*
37147 TTTCTCTTAAAACA
1 TTTCTCTTGAAACA
37161 AGATCATCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.32, C:0.20, G:0.05, T:0.43
Consensus pattern (15 bp):
TTTCTCTTGAAACAT
Found at i:37513 original size:35 final size:36
Alignment explanation
Indices: 37448--37532 Score: 104
Period size: 35 Copynumber: 2.4 Consensus size: 36
37438 CATTTGAATC
37448 TGTTTTTCTTGAAAAAAAAAACAAAGTCTTTGAGTA
1 TGTTTTTCTTGAAAAAAAAAACAAAGTCTTTGAGTA
*
37484 TGTTTTTCTT-AAAACAAAAAA-AACA-TCTTTGAGTT
1 TGTTTTTCTTGAAAA-AAAAAACAA-AGTCTTTGAGTA
* *
37519 TGTTTCTCTCGAAA
1 TGTTTTTCTTGAAA
37533 CACTAATCTT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
35 23 0.53
36 20 0.47
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.39
Consensus pattern (36 bp):
TGTTTTTCTTGAAAAAAAAAACAAAGTCTTTGAGTA
Found at i:37534 original size:35 final size:35
Alignment explanation
Indices: 37396--37534 Score: 104
Period size: 36 Copynumber: 3.9 Consensus size: 35
37386 TTTCTTTGAG
*
37396 AAAA-ATCTTTGAGTTTGTTTCT-TTGGAAACAAATT
1 AAAACATCTTTGAGTTTGTTTCTCTT-GAAACAAA-A
** * * * *
37431 TTACCATCATTTGAATCTGTTTTTCTTGAAA-AAAA
1 AAAACATC-TTTGAGTTTGTTTCTCTTGAAACAAAA
* * * *
37466 AAACAAAGTCTTTGAGTATGTTTTTCTTAAAACAAAA
1 AAA-ACA-TCTTTGAGTTTGTTTCTCTTGAAACAAAA
*
37503 AAAACATCTTTGAGTTTGTTTCTCTCGAAACA
1 AAAACATCTTTGAGTTTGTTTCTCTTGAAACA
37535 CTAATCTTTG
Statistics
Matches: 79, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
35 24 0.30
36 28 0.35
37 25 0.32
38 2 0.03
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.40
Consensus pattern (35 bp):
AAAACATCTTTGAGTTTGTTTCTCTTGAAACAAAA
Found at i:37592 original size:36 final size:35
Alignment explanation
Indices: 37539--37652 Score: 109
Period size: 36 Copynumber: 3.4 Consensus size: 35
37529 GAAACACTAA
*
37539 TCTTTGAGATCA-ATTCCCTTTAAACGAATTTTGTC
1 TCTTTGAGA-CAGTTTCCCTTTAAACGAATTTTGTC
*
37574 TCATTTGAGACAGTTTCCCTTTAAACG----TCG--
1 TC-TTTGAGACAGTTTCCCTTTAAACGAATTTTGTC
* *
37604 TCTTTGAGTC-GTTTCCCTTAAAACGAATTTTGTC
1 TCTTTGAGACAGTTTCCCTTTAAACGAATTTTGTC
37638 TCTTTTGAGACAGTT
1 TC-TTTGAGACAGTT
37653 GCTTTTAAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 19
0.72 0.07 0.22
Matches are distributed among these distances:
28 14 0.22
29 7 0.11
30 2 0.03
32 4 0.06
34 2 0.03
35 11 0.17
36 23 0.37
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.42
Consensus pattern (35 bp):
TCTTTGAGACAGTTTCCCTTTAAACGAATTTTGTC
Found at i:37701 original size:28 final size:28
Alignment explanation
Indices: 37670--37731 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
37660 AAAAAATATC
37670 ATCTTTGAGTTTATTT-TTCTTGAAACAA
1 ATCTTTGAGTTTATTTCTT-TTGAAACAA
* * *
37698 ATCTCTGGGTTTGTTTCTTTTGAAACAA
1 ATCTTTGAGTTTATTTCTTTTGAAACAA
37726 ATCTTT
1 ATCTTT
37732 AATTTGGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 27 0.93
29 2 0.07
ACGTcount: A:0.24, C:0.13, G:0.13, T:0.50
Consensus pattern (28 bp):
ATCTTTGAGTTTATTTCTTTTGAAACAA
Found at i:37868 original size:43 final size:42
Alignment explanation
Indices: 37809--38131 Score: 214
Period size: 43 Copynumber: 7.5 Consensus size: 42
37799 TCATCACCAG
37809 ACCAGATCTCCTCATCACGTAGGAGCCGTGTCAACCATAGATA
1 ACCAG-TCTCCTCATCACGTAGGAGCCGTGTCAACCATAGATA
* * * *
37852 ACCAGCCGTCCTCATCACGTAGGAACCGTGTTTC-ACCTTTAGATG
1 ACCAGTC-TCCTCATCACGTAGGAGCCGTG--TCAACC-ATAGATA
* * ** * * * * **
37897 GCAAAACTCTTCATCTCGTATGAGCCGTGTCATTCCCCAGAT-
1 ACCAGTCTCCTCATCACGTAGGAGCCGTGTCA-ACCATAGATA
37939 --CAGATCTCCTCATCACGTAGGAGCCGTGTCAACCATAGATA
1 ACCAG-TCTCCTCATCACGTAGGAGCCGTGTCAACCATAGATA
* * * * *
37980 ACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATG
1 ACCAGTC-TCCTCATCACGTAGGAGCCGTGTCA--ACC-ATAGATA
* * * * * *
38026 GCCAGAACTCTTCATCACGTATGAGCCG-GTCATTCC-CAGAT-
1 ACCAG-TCTCCTCATCACGTAGGAGCCGTGTCA-ACCATAGATA
38067 --CAGATCTCCTCATCACGTAGGAGCCGTGTCAACCATAGATA
1 ACCAG-TCTCCTCATCACGTAGGAGCCGTGTCAACCATAGATA
*
38108 ACCAGTCGTCCCCATCACGTAGGA
1 ACCAGTC-TCCTCATCACGTAGGA
38132 ACCGAGTATC
Statistics
Matches: 215, Mismatches: 44, Indels: 42
0.71 0.15 0.14
Matches are distributed among these distances:
39 25 0.12
40 15 0.07
41 23 0.11
42 10 0.05
43 74 0.34
44 25 0.12
45 16 0.07
46 26 0.12
47 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (42 bp):
ACCAGTCTCCTCATCACGTAGGAGCCGTGTCAACCATAGATA
Found at i:37992 original size:128 final size:128
Alignment explanation
Indices: 37794--38230 Score: 632
Period size: 128 Copynumber: 3.4 Consensus size: 128
37784 CATGTAGGAA
* *
37794 CCGTGTCATCACCAGACCAGATCTCCTCATCACGTAGGAGCCGTGTCAACCATAGATAACCAGCC
1 CCGTGTCATCCCCAGATCAGATCTCCTCATCACGTAGGAGCCGTGTCAACCATAGATAACCAGCC
37859 GTCCTCATCACGTAGGAACCGTGTTTCACCTTTAGATGG-CAAAACTCTTCATCTCGTATGAG
66 GTCCTCATCACGTAGGAACCGTGTTTCACCTTTAGATGGCCAAAACTCTTCATCTCGTATGAG
37921 CCGTGTCATTCCCCAGATCAGATCTCCTCATCACGTAGGAGCCGTGTCAACCATAGATAACCAGC
1 CCGTGTCA-TCCCCAGATCAGATCTCCTCATCACGTAGGAGCCGTGTCAACCATAGATAACCAGC
* *
37986 CGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCTTCATCACGTATGAG
65 CGTCCTCATCACGTAGGAACCGTGTT-TCACCTTTAGATGGCCAAAACTCTTCATCTCGTATGAG
* *
38051 CCG-GTCATTCCCAGATCAGATCTCCTCATCACGTAGGAGCCGTGTCAACCATAGATAACCAGTC
1 CCGTGTCATCCCCAGATCAGATCTCCTCATCACGTAGGAGCCGTGTCAACCATAGATAACCAGCC
* * *
38115 GTCCCCATCACGTAGGAACCGAGTATCACCCTTCTAAAGATGGCCAAGAACTCTTCATCAT-GTA
66 GTCCTCATCACGTAGGAACCGTGTTTCA-CCTT-T--AGATGGCCAA-AACTCTTCATC-TCGTA
38179 TGAG
125 TGAG
* * * *
38183 CAGTGTCATCCCTC-GA-CTAGATTTCCTCATCACGTAGGAACCATGTCA
1 CCGTGTCATCCC-CAGATC-AGATCTCCTCATCACGTAGGAGCCGTGTCA
38231 CCCTTAGACG
Statistics
Matches: 282, Mismatches: 16, Indels: 18
0.89 0.05 0.06
Matches are distributed among these distances:
127 11 0.04
128 161 0.57
129 19 0.07
130 24 0.09
131 9 0.03
132 21 0.07
133 36 0.13
134 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (128 bp):
CCGTGTCATCCCCAGATCAGATCTCCTCATCACGTAGGAGCCGTGTCAACCATAGATAACCAGCC
GTCCTCATCACGTAGGAACCGTGTTTCACCTTTAGATGGCCAAAACTCTTCATCTCGTATGAG
Found at i:38432 original size:3 final size:3
Alignment explanation
Indices: 38426--38462 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
38416 TTTTTTTGTA
**
38426 TAT TAT TAT TAT CGT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
38463 TAATTTACAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:38607 original size:25 final size:25
Alignment explanation
Indices: 38578--38673 Score: 140
Period size: 25 Copynumber: 3.9 Consensus size: 25
38568 CCAACCCATC
* *
38578 AGATTAGGGTTTTAAACCCTAAAGT
1 AGATTAGGGTTTCAAACCCTAAAAT
38603 AGATTAGGGTTTCAAACCCTAAAAT
1 AGATTAGGGTTTCAAACCCTAAAAT
* *
38628 CGATTAGGGTTTCAAACCCTAAAAC
1 AGATTAGGGTTTCAAACCCTAAAAT
*
38653 AAATTAGGGTTTC-AACCCTAA
1 AGATTAGGGTTTCAAACCCTAA
38674 TCCCCTCAAC
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
24 8 0.12
25 57 0.88
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.28
Consensus pattern (25 bp):
AGATTAGGGTTTCAAACCCTAAAAT
Found at i:42869 original size:34 final size:34
Alignment explanation
Indices: 42830--42894 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
42820 CACTCCTACT
42830 TTTGAGGGATGATTATTATTTTCTAAACAATTAC
1 TTTGAGGGATGATTATTATTTTCTAAACAATTAC
42864 TTTGAGGGATGATTATTATTTTCTAAACAAT
1 TTTGAGGGATGATTATTATTTTCTAAACAAT
42895 GAACTGAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.45
Consensus pattern (34 bp):
TTTGAGGGATGATTATTATTTTCTAAACAATTAC
Found at i:43039 original size:25 final size:25
Alignment explanation
Indices: 43011--43059 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
43001 CTAAAGATAC
*
43011 GAAGAAAATTGAAATCTTTCAATAT
1 GAAGAAAATTGAAATCCTTCAATAT
43036 GAAGAAAATTGAAATCCTTCAATA
1 GAAGAAAATTGAAATCCTTCAATA
43060 AGAACGACGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.49, C:0.10, G:0.12, T:0.29
Consensus pattern (25 bp):
GAAGAAAATTGAAATCCTTCAATAT
Found at i:43220 original size:24 final size:24
Alignment explanation
Indices: 43188--43233 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
43178 CCATGAGAAT
* *
43188 CGTGCCACAAGAGTAGAGAAAACG
1 CGTGCCACAAGAGCAAAGAAAACG
*
43212 CGTGTCACAAGAGCAAAGAAAA
1 CGTGCCACAAGAGCAAAGAAAA
43234 AACACTTCAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.20, G:0.26, T:0.09
Consensus pattern (24 bp):
CGTGCCACAAGAGCAAAGAAAACG
Found at i:87763 original size:15 final size:16
Alignment explanation
Indices: 87738--87770 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
87728 AAATTTAATC
87738 AATAGAAAAATAAATA
1 AATAGAAAAATAAATA
*
87754 AATA-AAAAATAATTA
1 AATAGAAAAATAAATA
87769 AA
1 AA
87771 CAATCCATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (16 bp):
AATAGAAAAATAAATA
Found at i:88669 original size:22 final size:22
Alignment explanation
Indices: 88634--88679 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
88624 ATTAAGGGTA
*
88634 AAATAATAATTTCACATTA-ATT
1 AAATAATAAATTCA-ATTATATT
*
88656 AAATATTAAATTCAATTATATT
1 AAATAATAAATTCAATTATATT
88678 AA
1 AA
88680 TTAAAGCCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (22 bp):
AAATAATAAATTCAATTATATT
Found at i:91062 original size:19 final size:19
Alignment explanation
Indices: 91038--91096 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
91028 TATGCATTAG
91038 GTTATGAACTTGAAAATAA
1 GTTATGAACTTGAAAATAA
*
91057 GTTATGAA-TATGAAATTAA
1 GTTATGAACT-TGAAAATAA
91076 GTTATGAATCTT--AAATAA
1 GTTATGAA-CTTGAAAATAA
91094 GTT
1 GTT
91097 TAAAGTCCGA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
18 9 0.26
19 24 0.69
20 1 0.03
21 1 0.03
ACGTcount: A:0.44, C:0.03, G:0.15, T:0.37
Consensus pattern (19 bp):
GTTATGAACTTGAAAATAA
Found at i:91149 original size:6 final size:6
Alignment explanation
Indices: 91138--91185 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
91128 AGTATGAATT
* * *
91138 ATGAAA ATGAAA TATGAAA GTGAAT ATGAAA GTGAAA GATGAAA ATGA
1 ATGAAA ATGAAA -ATGAAA ATGAAA ATGAAA ATGAAA -ATGAAA ATGA
91186 GATATGAAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
6 23 0.68
7 11 0.32
ACGTcount: A:0.56, C:0.00, G:0.23, T:0.21
Consensus pattern (6 bp):
ATGAAA
Found at i:91153 original size:13 final size:13
Alignment explanation
Indices: 91117--91194 Score: 77
Period size: 13 Copynumber: 5.9 Consensus size: 13
91107 AAATAAGTTC
*
91117 TGAAATGTGAAAGTA
1 TGAAATATGAAA--A
*
91132 TGAATTATGAAAA
1 TGAAATATGAAAA
*
91145 TGAAATATGAAAG
1 TGAAATATGAAAA
*
91158 TG-AATATGAAAG
1 TGAAATATGAAAA
*
91170 TGAAAGATGAAAA
1 TGAAATATGAAAA
*
91183 TGAGATATGAAA
1 TGAAATATGAAA
91195 GTTTTGTATT
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
12 12 0.22
13 32 0.59
15 10 0.19
ACGTcount: A:0.53, C:0.00, G:0.23, T:0.24
Consensus pattern (13 bp):
TGAAATATGAAAA
Found at i:91303 original size:38 final size:39
Alignment explanation
Indices: 91224--91305 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 39
91214 TGAAAAAATA
91224 TGATATGACTACTATGTATGATATTGTTTATCATGGCTT
1 TGATATGACTACTATGTATGATATTGTTTATCATGGCTT
* * *
91263 TGATATGACTATTATGTATGGTATTG-TTATCATGGTTT
1 TGATATGACTACTATGTATGATATTGTTTATCATGGCTT
91301 TGATA
1 TGATA
91306 AAATCATGAG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
38 16 0.40
39 24 0.60
ACGTcount: A:0.26, C:0.07, G:0.20, T:0.48
Consensus pattern (39 bp):
TGATATGACTACTATGTATGATATTGTTTATCATGGCTT
Found at i:103288 original size:166 final size:166
Alignment explanation
Indices: 103014--103345 Score: 664
Period size: 166 Copynumber: 2.0 Consensus size: 166
103004 TTGGTAGATT
103014 CTGTCGAGTTCATATAGTTTGGCCTACTATTGCAATTTGCAACTCTCCTCTGTTCTATCTGTATC
1 CTGTCGAGTTCATATAGTTTGGCCTACTATTGCAATTTGCAACTCTCCTCTGTTCTATCTGTATC
103079 CAAGCAAGTGTTTCCAGTTGAAGTGCATACTGAAGATGAAGCTGAGCTTGGATCATACCGAAACT
66 CAAGCAAGTGTTTCCAGTTGAAGTGCATACTGAAGATGAAGCTGAGCTTGGATCATACCGAAACT
103144 TGGAACTTGGACTCGAGGAGGATCAAGTGACTCGCC
131 TGGAACTTGGACTCGAGGAGGATCAAGTGACTCGCC
103180 CTGTCGAGTTCATATAGTTTGGCCTACTATTGCAATTTGCAACTCTCCTCTGTTCTATCTGTATC
1 CTGTCGAGTTCATATAGTTTGGCCTACTATTGCAATTTGCAACTCTCCTCTGTTCTATCTGTATC
103245 CAAGCAAGTGTTTCCAGTTGAAGTGCATACTGAAGATGAAGCTGAGCTTGGATCATACCGAAACT
66 CAAGCAAGTGTTTCCAGTTGAAGTGCATACTGAAGATGAAGCTGAGCTTGGATCATACCGAAACT
103310 TGGAACTTGGACTCGAGGAGGATCAAGTGACTCGCC
131 TGGAACTTGGACTCGAGGAGGATCAAGTGACTCGCC
103346 TGACCATGGA
Statistics
Matches: 166, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
166 166 1.00
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (166 bp):
CTGTCGAGTTCATATAGTTTGGCCTACTATTGCAATTTGCAACTCTCCTCTGTTCTATCTGTATC
CAAGCAAGTGTTTCCAGTTGAAGTGCATACTGAAGATGAAGCTGAGCTTGGATCATACCGAAACT
TGGAACTTGGACTCGAGGAGGATCAAGTGACTCGCC
Found at i:103701 original size:31 final size:32
Alignment explanation
Indices: 103666--103728 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
103656 TTGAATCGAA
103666 CTCAGTTTTACAC-TTCGAGTAGCTCGAGCTG
1 CTCAGTTTTACACTTTCGAGTAGCTCGAGCTG
*
103697 CTCAGTTTTACACTTTTCGAGTCGCTCGAGCT
1 CTCAGTTTTACAC-TTTCGAGTAGCTCGAGCT
103729 CGAGTTGTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 13 0.45
33 16 0.55
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (32 bp):
CTCAGTTTTACACTTTCGAGTAGCTCGAGCTG
Found at i:109765 original size:12 final size:12
Alignment explanation
Indices: 109748--109779 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
109738 TTTTAATATT
109748 TATCGGGCCGGA
1 TATCGGGCCGGA
109760 TATCGGGCCGGA
1 TATCGGGCCGGA
109772 TATTCGGG
1 TA-TCGGG
109780 TAATCGGGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.16, C:0.22, G:0.41, T:0.22
Consensus pattern (12 bp):
TATCGGGCCGGA
Found at i:112285 original size:65 final size:61
Alignment explanation
Indices: 112172--112290 Score: 159
Period size: 65 Copynumber: 1.9 Consensus size: 61
112162 TTGCTAAAAG
* *
112172 GGGTAAACTTCATTTGGCTCCTCTGTTTTGAACAACATTCAATTTGGTCCCCAAATCGGTT
1 GGGTAAACTTCATTTGGCTCCTCTGTTTTAAAAAACATTCAATTTGGTCCCCAAATCGGTT
*
112233 GGGT-AACTTCATTTTGGCTCCCTCTGTTTTAAAAAAAAACATTTAATTTGGTCCCCAA
1 GGGTAAACTTCA-TTTGGCT-CCTCTGTTTT---AAAAAACATTCAATTTGGTCCCCAA
112291 TCAGTTTAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
60 7 0.14
61 11 0.22
62 10 0.20
65 22 0.44
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (61 bp):
GGGTAAACTTCATTTGGCTCCTCTGTTTTAAAAAACATTCAATTTGGTCCCCAAATCGGTT
Found at i:112548 original size:18 final size:18
Alignment explanation
Indices: 112514--112547 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
112504 ATTACTCATA
*
112514 TTTGCTTTTTTTATTTTC
1 TTTGCTTTTTATATTTTC
112532 TTTG-TTTTTATATTTT
1 TTTGCTTTTTATATTTT
112548 TATGGATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.09, C:0.06, G:0.06, T:0.79
Consensus pattern (18 bp):
TTTGCTTTTTATATTTTC
Found at i:112775 original size:2 final size:2
Alignment explanation
Indices: 112768--112806 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
112758 TTATATTTTA
* * *
112768 AT AT AT AT GT AT AT AT AT AT AT AT AT AT CT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
112807 CTCGTAATAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (2 bp):
AT
Found at i:117449 original size:195 final size:196
Alignment explanation
Indices: 117063--117453 Score: 743
Period size: 195 Copynumber: 2.0 Consensus size: 196
117053 ATATCAACGT
117063 GGAAAGACTTAGCCAAGTCTTTCTGGAGCAGTATAAGCATATCAACGATATGAGACCAGACCGGG
1 GGAAAGACTTAGCCAAGTCTTTCTGGAGCAGTATAAGCATATCAACGATATGAGACCAGACCGGG
117128 TCATGTTACAAAGCCTGGAGAAGAAACACAATGAGAGTTTCCGACAATACGCACAGAGATGGAGG
66 TCATGTTACAAAGCCTGGAGAAGAAACACAATGAGAGTTTCCGACAATACGCACAGAGATGGAGG
117193 GATTTATCGTACAAGTTCATCCACCTTTGGATGAAAAGGAAACTAGAAAGCTGTTTGTACAGACC
131 GATTTATCGTACAAGTTCATCCACCTTTGGATGAAAAGGAAACTAGAAAGCTGTTTGTACAGACC
117258 C
196 C
117259 GGAAAGACTTAGCCAAGTCTTTCCTGGAGCAGTATAAGCATATCAACGATATGAGACCAGACCGG
1 GGAAAGACTTAGCCAAGTCTTT-CTGGAGCAGTATAAGCATATCAACGATATGAGACCAGACCGG
117324 GTCATGTTACAAAGCCTGGAGAAG-AA-ACAATGAGAGTTTCCGACCAATACGCACAGAGATGGA
65 GTCATGTTACAAAGCCTGGAGAAGAAACACAATGAGAGTTTCCGA-CAATACGCACAGAGATGGA
117387 GGGATTTATC-TACAAGTTCATCCACCTTTGGATGAAAAGGAAACTAGAAAGCTGTTTGTACAGA
129 GGGATTTATCGTACAAGTTCATCCACCTTTGGATGAAAAGGAAACTAGAAAGCTGTTTGTACAGA
117451 CCC
194 CCC
117454 TGAGGGCACC
Statistics
Matches: 193, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
195 74 0.38
196 53 0.27
197 66 0.34
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (196 bp):
GGAAAGACTTAGCCAAGTCTTTCTGGAGCAGTATAAGCATATCAACGATATGAGACCAGACCGGG
TCATGTTACAAAGCCTGGAGAAGAAACACAATGAGAGTTTCCGACAATACGCACAGAGATGGAGG
GATTTATCGTACAAGTTCATCCACCTTTGGATGAAAAGGAAACTAGAAAGCTGTTTGTACAGACC
C
Found at i:123339 original size:1 final size:1
Alignment explanation
Indices: 123333--123368 Score: 54
Period size: 1 Copynumber: 36.0 Consensus size: 1
123323 TCCTAAGTTG
* *
123333 AAAAAAAAAAAAAAAAAAAAAAGAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
123369 GAAGAAGAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00
Consensus pattern (1 bp):
A
Found at i:123359 original size:17 final size:17
Alignment explanation
Indices: 123333--123374 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
123323 TCCTAAGTTG
123333 AAAAAA-AAAAAAAAAA
1 AAAAAAGAAAAAAAAAA
*
123349 AAAAAAGAAAAAAGAAA
1 AAAAAAGAAAAAAAAAA
*
123366 AAAGAAGAA
1 AAAAAAGAA
123375 GAAGAAGAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 6 0.26
17 17 0.74
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (17 bp):
AAAAAAGAAAAAAAAAA
Found at i:123369 original size:14 final size:13
Alignment explanation
Indices: 123333--123371 Score: 62
Period size: 12 Copynumber: 3.0 Consensus size: 13
123323 TCCTAAGTTG
123333 AAAAAAAAAA-AA
1 AAAAAAAAAAGAA
123345 AAAAAAAAAAGAA
1 AAAAAAAAAAGAA
123358 AAAAGAAAAAAGAA
1 AAAA-AAAAAAGAA
123372 GAAGAAGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 10 0.40
13 6 0.24
14 9 0.36
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAGAA
Found at i:123563 original size:47 final size:47
Alignment explanation
Indices: 123451--123588 Score: 187
Period size: 47 Copynumber: 3.0 Consensus size: 47
123441 AAGAGAAAAT
* * * * *
123451 AAGG-TGGGTTCAAGATGAAAACCCGCAAAGGGCG-TCTTGCA-A-CT
1 AAGGATGGGTCCAAGTTGAAAACCCGGAAAGGGCGAT-TTGGATATCA
123495 AAGGAT-GGTCCAAGTTGAAAACCCGGAAAGGGCGATTTGGATATCA
1 AAGGATGGGTCCAAGTTGAAAACCCGGAAAGGGCGATTTGGATATCA
123541 AAGGATGGGTCCAAGTTGAAAACCCGGAAAGGGCGATTTGGATATCA
1 AAGGATGGGTCCAAGTTGAAAACCCGGAAAGGGCGATTTGGATATCA
123588 A
1 A
123589 CAGAGGAAAC
Statistics
Matches: 84, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
44 33 0.39
45 3 0.04
46 7 0.08
47 41 0.49
ACGTcount: A:0.34, C:0.17, G:0.30, T:0.19
Consensus pattern (47 bp):
AAGGATGGGTCCAAGTTGAAAACCCGGAAAGGGCGATTTGGATATCA
Found at i:124391 original size:105 final size:105
Alignment explanation
Indices: 124209--124691 Score: 909
Period size: 105 Copynumber: 4.6 Consensus size: 105
124199 AGGTTTTACC
124209 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACG
124274 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
124314 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACG
124379 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
*
124419 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAAACTTCAC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTC-AACTTCAC
124484 GACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
65 GACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
124525 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACG
124590 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
124630 CAGAGAGCCAATTTCAACTT--CAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAA-TTCA
1 C--AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCA
124692 ACTTCACAAC
Statistics
Matches: 373, Mismatches: 2, Indels: 7
0.98 0.01 0.02
Matches are distributed among these distances:
104 4 0.01
105 248 0.66
106 104 0.28
107 17 0.05
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
Found at i:124572 original size:211 final size:211
Alignment explanation
Indices: 124209--124687 Score: 910
Period size: 211 Copynumber: 2.3 Consensus size: 211
124199 AGGTTTTACC
124209 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTC-AACTTCAC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAAACTTCAC
124273 GACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAAC
66 GACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAAC
124338 GAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
131 GAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
124403 GAACATTTCTCAATTT
196 GAACATTTCTCAATTT
*
124419 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAAACTTCAC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAAACTTCAC
124484 GACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAAC
66 GACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAAC
124549 GAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
131 GAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
124614 GAACATTTCTCAATTT
196 GAACATTTCTCAATTT
124630 CAGAGAGCCAATTTCAACTT--CAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAA
1 C--AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAA
124688 TTCAACTTCA
Statistics
Matches: 264, Mismatches: 2, Indels: 5
0.97 0.01 0.02
Matches are distributed among these distances:
210 55 0.21
211 192 0.73
213 17 0.06
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.23
Consensus pattern (211 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAAACTTCAC
GACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAAC
GAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC
GAACATTTCTCAATTT
Found at i:124677 original size:24 final size:24
Alignment explanation
Indices: 124650--124725 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
124640 ATTTCAACTT
124650 CAACGAAGGATATTGGACTCCAGG
1 CAACGAAGGATATTGGACTCCAGG
* ** *
124674 CAACGTAA-GTTCAATTCAACTTCA--
1 CAACG-AAGGAT--ATTGGACTCCAGG
124698 CAACGAAGGATA-TGGACTCCAGG
1 CAACGAAGGATATTGGACTCCAGG
124721 CAACG
1 CAACG
124726 TAAGTTCAAC
Statistics
Matches: 38, Mismatches: 8, Indels: 13
0.64 0.14 0.22
Matches are distributed among these distances:
21 6 0.16
22 1 0.03
23 7 0.18
24 14 0.37
25 2 0.05
26 8 0.21
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (24 bp):
CAACGAAGGATATTGGACTCCAGG
Found at i:124717 original size:47 final size:47
Alignment explanation
Indices: 124642--124739 Score: 164
Period size: 47 Copynumber: 2.1 Consensus size: 47
124632 GAGAGCCAAT
124642 TTCAACTTCAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAA-
1 TTCAACTTCAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAAC
124688 TTCAACTTCACAACGAAGGATA-TGGACTCCAGGCAACGTAAGTTCAAC
1 TTCAACTT--CAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAAC
124736 TTCA
1 TTCA
124740 CGACGAAGGG
Statistics
Matches: 49, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
46 8 0.16
47 25 0.51
48 16 0.33
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.23
Consensus pattern (47 bp):
TTCAACTTCAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAAC
Found at i:124732 original size:152 final size:152
Alignment explanation
Indices: 124535--124821 Score: 506
Period size: 152 Copynumber: 1.9 Consensus size: 152
124525 CAGAGCCAAT
124535 TTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACGACGAAGGGAC
1 TTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACGACGAAGGGAC
* * *
124600 CGCTGGTTGTCAACGAACATTTCTCAATTTCAGAGAGCCAATTTCAACTT-CAACGAAGGATATT
66 CGCTGATTGTCAACAAACATTTCCCAATTTC--AGAGCCAATTTCAACTTACAACGAAGGATATT
124664 GGACTCCAGGCAACGTAAGTTCAA
129 GGACTCCAGGCAACGTAAGTTCAA
124688 TTCAACTTCACAACGAAGGATA-TGGACTCCAGGCAACGTAAGTTCAACTTCACGACGAAGGGAC
1 TTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACGACGAAGGGAC
124752 CGCTGATTGTCAACAAACATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTG
66 CGCTGATTGTCAACAAACATTTCCCAATTTCAGAGCCAATTTCAACTT-ACAACGAAGGATATTG
124817 GACTC
130 GACTC
124822 GAAACAACAC
Statistics
Matches: 129, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
150 17 0.13
152 90 0.70
153 22 0.17
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.23
Consensus pattern (152 bp):
TTCAACTTCACAACGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACGACGAAGGGAC
CGCTGATTGTCAACAAACATTTCCCAATTTCAGAGCCAATTTCAACTTACAACGAAGGATATTGG
ACTCCAGGCAACGTAAGTTCAA
Found at i:126147 original size:63 final size:63
Alignment explanation
Indices: 126046--126170 Score: 223
Period size: 63 Copynumber: 2.0 Consensus size: 63
126036 TTTGCTAAAA
* *
126046 GGTAAACTTCATTTTGGCTCCCTCTGTTTTGAACAACATTCAATTTGGTCCCCAAATCGGTTG
1 GGTAAACTTCATTTTGGCTCCCTCTGTTTTAAAAAACATTCAATTTGGTCCCCAAATCGGTTG
*
126109 GGTAAACTTCATTTTGGCTCCCTCTGTTTTAAAAAACATTTAATTTGGTCCCCAAATCGGTT
1 GGTAAACTTCATTTTGGCTCCCTCTGTTTTAAAAAACATTCAATTTGGTCCCCAAATCGGTT
126171 TAATTCCCTT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (63 bp):
GGTAAACTTCATTTTGGCTCCCTCTGTTTTAAAAAACATTCAATTTGGTCCCCAAATCGGTTG
Found at i:126419 original size:18 final size:18
Alignment explanation
Indices: 126385--126418 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
126375 ATATTACTCA
*
126385 TTTGCTTTTTTTATTTTC
1 TTTGCTTTTTATATTTTC
126403 TTTG-TTTTTATATTTT
1 TTTGCTTTTTATATTTT
126419 TTATGGATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.09, C:0.06, G:0.06, T:0.79
Consensus pattern (18 bp):
TTTGCTTTTTATATTTTC
Found at i:132036 original size:30 final size:30
Alignment explanation
Indices: 131980--132036 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
131970 ATATATATAT
*
131980 ATATAATCACTTTGTTTTTATTTAATTAAA
1 ATATAATCACTTTGTTTTTATCTAATTAAA
*
132010 ATATAGTCACTTTCGTTTTTA-CTAATT
1 ATATAATCACTTT-GTTTTTATCTAATT
132037 GTCGTTAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 17 0.71
31 7 0.29
ACGTcount: A:0.32, C:0.11, G:0.05, T:0.53
Consensus pattern (30 bp):
ATATAATCACTTTGTTTTTATCTAATTAAA
Found at i:132528 original size:15 final size:15
Alignment explanation
Indices: 132510--132539 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
132500 AAAAAGACAA
132510 AACATAAACATAAGT
1 AACATAAACATAAGT
132525 AACATAAACATAAGT
1 AACATAAACATAAGT
132540 GATCAATCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (15 bp):
AACATAAACATAAGT
Found at i:132804 original size:37 final size:37
Alignment explanation
Indices: 132763--132838 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
132753 TTCCAATAGG
* * *
132763 CTCGAATTAATTTCAAGTTGTGTTTTTATAAACTCGA
1 CTCGAATTAATTTCAAGTTATGATTTCATAAACTCGA
*
132800 CTCGAATTAATTTCGAGTTATGATTTCATAAACTCGA
1 CTCGAATTAATTTCAAGTTATGATTTCATAAACTCGA
132837 CT
1 CT
132839 AAAAAAATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.41
Consensus pattern (37 bp):
CTCGAATTAATTTCAAGTTATGATTTCATAAACTCGA
Found at i:134140 original size:60 final size:60
Alignment explanation
Indices: 134066--134178 Score: 147
Period size: 60 Copynumber: 1.9 Consensus size: 60
134056 TCGAGTTTCA
* * * * *
134066 ATTTTGTAACTTTTAATAGTTGAGGGACTTAACAAAATAATAT-TCTATAGTCGAATGATT
1 ATTTTATAACTTTTAATAATCGAGAGACTCAACAAAATAATATCT-TATAGTCGAATGATT
* *
134126 ATTTTATAATTTTTAATAATCGAGAGACTCAATAAAATAATATCTTATAGTCG
1 ATTTTATAACTTTTAATAATCGAGAGACTCAACAAAATAATATCTTATAGTCG
134179 GTGGATATTT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
60 44 0.98
61 1 0.02
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.40
Consensus pattern (60 bp):
ATTTTATAACTTTTAATAATCGAGAGACTCAACAAAATAATATCTTATAGTCGAATGATT
Found at i:136033 original size:2 final size:2
Alignment explanation
Indices: 135990--136016 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
135980 ACACAATCTC
135990 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
136017 CATGATCCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:136580 original size:5 final size:5
Alignment explanation
Indices: 136570--136600 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
136560 TAAGTCGTGA
136570 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT T
136601 CATACGATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:142592 original size:21 final size:21
Alignment explanation
Indices: 142566--142605 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
142556 TAGAATGTTG
142566 TTTTGTTATTTGTTAAGTCTA
1 TTTTGTTATTTGTTAAGTCTA
142587 TTTTGTTATTTGTTAAGTC
1 TTTTGTTATTTGTTAAGTC
142606 ATTCGACTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.05, G:0.15, T:0.62
Consensus pattern (21 bp):
TTTTGTTATTTGTTAAGTCTA
Found at i:146282 original size:8 final size:8
Alignment explanation
Indices: 146269--147928 Score: 2901
Period size: 8 Copynumber: 207.8 Consensus size: 8
146259 TAAGCTAATG
146269 ACATACAT
1 ACATACAT
146277 ACATACAT
1 ACATACAT
146285 ACATACAT
1 ACATACAT
146293 ACATACAT
1 ACATACAT
146301 ACATACAT
1 ACATACAT
146309 ACATACAT
1 ACATACAT
146317 ACATACAT
1 ACATACAT
146325 ACATACAT
1 ACATACAT
146333 ACATACAT
1 ACATACAT
146341 ACATACAT
1 ACATACAT
146349 ACATACAT
1 ACATACAT
146357 ACATACAT
1 ACATACAT
146365 ACATACAT
1 ACATACAT
146373 ACATACAT
1 ACATACAT
146381 ACATACAT
1 ACATACAT
146389 ACATACAT
1 ACATACAT
146397 ACATACAT
1 ACATACAT
146405 ACATACAT
1 ACATACAT
146413 ACATACAT
1 ACATACAT
146421 ACATACAT
1 ACATACAT
146429 ACATACAT
1 ACATACAT
146437 ACATACAT
1 ACATACAT
146445 ACATACAT
1 ACATACAT
146453 ACATACAT
1 ACATACAT
146461 AC--ACAT
1 ACATACAT
146467 ACATACAT
1 ACATACAT
146475 ACATACAT
1 ACATACAT
146483 ACATACAT
1 ACATACAT
146491 ACATACAT
1 ACATACAT
146499 ACATACAT
1 ACATACAT
146507 ACATACAT
1 ACATACAT
146515 ACATACAT
1 ACATACAT
146523 ACATACAT
1 ACATACAT
146531 ACATACAT
1 ACATACAT
146539 ACATACAT
1 ACATACAT
146547 ACATACAT
1 ACATACAT
146555 ACATACAT
1 ACATACAT
146563 ACATACAT
1 ACATACAT
146571 ACATACAT
1 ACATACAT
146579 ACATACAT
1 ACATACAT
146587 ACATACAT
1 ACATACAT
146595 ACATACAT
1 ACATACAT
146603 ACATACAT
1 ACATACAT
146611 ACATACAT
1 ACATACAT
146619 ACATACAT
1 ACATACAT
146627 ACATACAT
1 ACATACAT
146635 ACATACAT
1 ACATACAT
146643 ACATACAT
1 ACATACAT
146651 ACATACAT
1 ACATACAT
146659 ACATACAT
1 ACATACAT
146667 ACATACAT
1 ACATACAT
146675 ACATACAT
1 ACATACAT
146683 ACATACAT
1 ACATACAT
146691 ACATACAT
1 ACATACAT
146699 ACATACAT
1 ACATACAT
146707 ACATACAT
1 ACATACAT
146715 ACATACAT
1 ACATACAT
146723 ACATACAT
1 ACATACAT
146731 ACATACAT
1 ACATACAT
146739 ACATACAT
1 ACATACAT
146747 ACATACAT
1 ACATACAT
146755 ACATACAT
1 ACATACAT
146763 ACATACAT
1 ACATACAT
146771 ACATACAT
1 ACATACAT
146779 ACATACAT
1 ACATACAT
146787 ACATACAT
1 ACATACAT
146795 ACATACAT
1 ACATACAT
146803 ACATACAT
1 ACATACAT
146811 ACATACAT
1 ACATACAT
146819 ACATACAT
1 ACATACAT
146827 ACATACAT
1 ACATACAT
146835 ACATACAT
1 ACATACAT
146843 ACATACAT
1 ACATACAT
146851 ACATACAT
1 ACATACAT
146859 ACATACAT
1 ACATACAT
146867 ACATACAT
1 ACATACAT
146875 ACATACAT
1 ACATACAT
146883 ACATACAT
1 ACATACAT
146891 ACATACAT
1 ACATACAT
146899 ACATACAT
1 ACATACAT
146907 ACATACAT
1 ACATACAT
146915 ACATACAT
1 ACATACAT
146923 ACATACAT
1 ACATACAT
146931 ACATACAT
1 ACATACAT
*
146939 ACATACGT
1 ACATACAT
146947 ACATACAT
1 ACATACAT
*
146955 ACGTACAT
1 ACATACAT
146963 ACATACAT
1 ACATACAT
146971 ACATACAT
1 ACATACAT
146979 ACATACAT
1 ACATACAT
146987 ACATACAT
1 ACATACAT
146995 ACATACAT
1 ACATACAT
*
147003 ACATACGT
1 ACATACAT
147011 ACATACAT
1 ACATACAT
147019 ACATACAT
1 ACATACAT
147027 ACATACAT
1 ACATACAT
147035 ACATACAT
1 ACATACAT
*
147043 ACATACGT
1 ACATACAT
*
147051 ACATACGT
1 ACATACAT
147059 ACATACAT
1 ACATACAT
147067 ACATACAT
1 ACATACAT
147075 ACATACAT
1 ACATACAT
147083 ACATACAT
1 ACATACAT
147091 ACATACAT
1 ACATACAT
147099 ACATACAT
1 ACATACAT
147107 ACATACAT
1 ACATACAT
147115 ACATACAT
1 ACATACAT
147123 ACATACAT
1 ACATACAT
147131 ACATACAT
1 ACATACAT
147139 ACATACAT
1 ACATACAT
147147 ACATACAT
1 ACATACAT
147155 ACATACAT
1 ACATACAT
147163 ACATACAT
1 ACATACAT
147171 ACATACAT
1 ACATACAT
147179 ACATACAT
1 ACATACAT
147187 ACATACAT
1 ACATACAT
147195 ACATACAT
1 ACATACAT
147203 ACATACAT
1 ACATACAT
147211 ACATACAT
1 ACATACAT
147219 ACATACAT
1 ACATACAT
147227 ACATACAT
1 ACATACAT
147235 ACATACAT
1 ACATACAT
147243 ACATACAT
1 ACATACAT
147251 ACATACAT
1 ACATACAT
147259 ACATACAT
1 ACATACAT
147267 ACATACAT
1 ACATACAT
147275 ACATACAT
1 ACATACAT
147283 ACATACAT
1 ACATACAT
147291 ACATACAT
1 ACATACAT
147299 ACATACAT
1 ACATACAT
147307 ACATACAT
1 ACATACAT
147315 ACATACAT
1 ACATACAT
147323 ACATACAT
1 ACATACAT
147331 ACATACAT
1 ACATACAT
147339 ACATACAT
1 ACATACAT
147347 ACATACAT
1 ACATACAT
147355 ACATACAT
1 ACATACAT
147363 ACATACAT
1 ACATACAT
147371 ACATACAT
1 ACATACAT
147379 ACATACAT
1 ACATACAT
147387 ACATACAT
1 ACATACAT
*
147395 ACATACGT
1 ACATACAT
147403 ACATACAT
1 ACATACAT
*
147411 ACATAAAT
1 ACATACAT
147419 ACATACAT
1 ACATACAT
*
147427 ACGTACAT
1 ACATACAT
* *
147435 ATATACGT
1 ACATACAT
147443 ACATACAT
1 ACATACAT
147451 ACATACAT
1 ACATACAT
*
147459 ACGTACAT
1 ACATACAT
*
147467 ACGTACAT
1 ACATACAT
147475 ACATACAT
1 ACATACAT
*
147483 ACGTACAT
1 ACATACAT
*
147491 ACGTACAT
1 ACATACAT
*
147499 ACCTACAT
1 ACATACAT
*
147507 ACGTACAT
1 ACATACAT
*
147515 ACGTACAT
1 ACATACAT
*
147523 ACGTACAT
1 ACATACAT
147531 ACATACAT
1 ACATACAT
*
147539 ACGTACAT
1 ACATACAT
*
147547 ACGTACAT
1 ACATACAT
147555 ACATACAT
1 ACATACAT
*
147563 ACATACGT
1 ACATACAT
*
147571 ACATACGT
1 ACATACAT
147579 ACATACAT
1 ACATACAT
147587 ACATACAT
1 ACATACAT
147595 ACATACAT
1 ACATACAT
147603 ACATACAT
1 ACATACAT
147611 ACATACAT
1 ACATACAT
147619 ACATACAT
1 ACATACAT
*
147627 ACGTACAT
1 ACATACAT
*
147635 ACGTACAT
1 ACATACAT
*
147643 ACGTACAT
1 ACATACAT
147651 ACATACAT
1 ACATACAT
147659 ACATACAT
1 ACATACAT
*
147667 ACATACGT
1 ACATACAT
147675 ACATACAT
1 ACATACAT
147683 ACATACAT
1 ACATACAT
147691 ACATACAT
1 ACATACAT
*
147699 ACGTACAT
1 ACATACAT
147707 ACATACAT
1 ACATACAT
147715 ACATACAT
1 ACATACAT
*
147723 ACGTACAT
1 ACATACAT
*
147731 ACGTACAT
1 ACATACAT
*
147739 ACGTACAT
1 ACATACAT
*
147747 ACGTACAT
1 ACATACAT
*
147755 ACGTACAT
1 ACATACAT
*
147763 ACGTACAT
1 ACATACAT
*
147771 ACGTACAT
1 ACATACAT
*
147779 ACGTACAT
1 ACATACAT
*
147787 ACGTACAT
1 ACATACAT
*
147795 ACGTACAT
1 ACATACAT
*
147803 ACGTACAT
1 ACATACAT
*
147811 ACCTACAT
1 ACATACAT
*
147819 ACCTACAT
1 ACATACAT
147827 ACATACAT
1 ACATACAT
147835 ACATACAT
1 ACATACAT
147843 ACATACAT
1 ACATACAT
147851 ACATACAT
1 ACATACAT
147859 ACATACAT
1 ACATACAT
147867 ACATACAT
1 ACATACAT
*
147875 ACATACGT
1 ACATACAT
*
147883 ACATACGT
1 ACATACAT
*
147891 ACATACGT
1 ACATACAT
*
147899 ACATACGT
1 ACATACAT
*
147907 ACGTACAT
1 ACATACAT
147915 ACATACAT
1 ACATACAT
147923 ACATAC
1 ACATAC
147929 GCACCGTTTT
Statistics
Matches: 1609, Mismatches: 41, Indels: 4
0.97 0.02 0.00
Matches are distributed among these distances:
6 6 0.00
8 1603 1.00
ACGTcount: A:0.47, C:0.25, G:0.02, T:0.25
Consensus pattern (8 bp):
ACATACAT
Found at i:148583 original size:48 final size:48
Alignment explanation
Indices: 148506--148605 Score: 155
Period size: 48 Copynumber: 2.1 Consensus size: 48
148496 TACAACTGGC
* * * * *
148506 TTTGAGTGGTTAGAGAAAGCTATTTATGAATATGGATTTGTACTGACG
1 TTTGAGTGGTTAGAGAAAACTACTAATGAACATGGATTTATACTGACG
148554 TTTGAGTGGTTAGAGAAAACTACTAATGAACATGGATTTATACTGACG
1 TTTGAGTGGTTAGAGAAAACTACTAATGAACATGGATTTATACTGACG
148602 TTTG
1 TTTG
148606 TAAGCTTTTG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (48 bp):
TTTGAGTGGTTAGAGAAAACTACTAATGAACATGGATTTATACTGACG
Found at i:148822 original size:12 final size:12
Alignment explanation
Indices: 148805--148829 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
148795 CCCTCCTAGC
148805 TAGAAATTAACT
1 TAGAAATTAACT
148817 TAGAAATTAACT
1 TAGAAATTAACT
148829 T
1 T
148830 TCATTATACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (12 bp):
TAGAAATTAACT
Found at i:156074 original size:28 final size:28
Alignment explanation
Indices: 156042--156100 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
156032 AAAGTTTAAC
156042 TGCCATGTCTAATATTGAAAGTGTATTT
1 TGCCATGTCTAATATTGAAAGTGTATTT
156070 TGCCATGTCTAATATTGAAAGTGTATTT
1 TGCCATGTCTAATATTGAAAGTGTATTT
156098 TGC
1 TGC
156101 TCTCATTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.42
Consensus pattern (28 bp):
TGCCATGTCTAATATTGAAAGTGTATTT
Found at i:158944 original size:2 final size:2
Alignment explanation
Indices: 158937--158965 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
158927 AAAATCAACT
158937 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
158966 CATCTCTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:161818 original size:12 final size:12
Alignment explanation
Indices: 161803--161844 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
161793 GGTACTGCTA
161803 AGGGTGCTAGTG
1 AGGGTGCTAGTG
*
161815 AGGGTGCTGGTG
1 AGGGTGCTAGTG
* *
161827 AGGGTGCAACTG
1 AGGGTGCTAGTG
161839 AGGGTG
1 AGGGTG
161845 TTGCTGATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.17, C:0.10, G:0.52, T:0.21
Consensus pattern (12 bp):
AGGGTGCTAGTG
Found at i:161844 original size:24 final size:24
Alignment explanation
Indices: 161789--161849 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
161779 TAATTGCCGT
* * *
161789 TGAGGGTACTGCTAAGGGTGCTAG
1 TGAGGGTGCTGCTAAGGGTGCAAC
* *
161813 TGAGGGTGCTGGTGAGGGTGCAAC
1 TGAGGGTGCTGCTAAGGGTGCAAC
*
161837 TGAGGGTGTTGCT
1 TGAGGGTGCTGCT
161850 GATTATGCTG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.16, C:0.11, G:0.46, T:0.26
Consensus pattern (24 bp):
TGAGGGTGCTGCTAAGGGTGCAAC
Found at i:161851 original size:12 final size:12
Alignment explanation
Indices: 161789--161851 Score: 56
Period size: 12 Copynumber: 5.2 Consensus size: 12
161779 TAATTGCCGT
*
161789 TGAGGGTACTGC
1 TGAGGGTGCTGC
*
161801 TAAGGGTGCTAG-
1 TGAGGGTGCT-GC
*
161813 TGAGGGTGCTGG
1 TGAGGGTGCTGC
**
161825 TGAGGGTGCAAC
1 TGAGGGTGCTGC
*
161837 TGAGGGTGTTGC
1 TGAGGGTGCTGC
161849 TGA
1 TGA
161852 TTATGCTGCT
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
11 1 0.03
12 38 0.95
13 1 0.03
ACGTcount: A:0.17, C:0.11, G:0.46, T:0.25
Consensus pattern (12 bp):
TGAGGGTGCTGC
Found at i:162253 original size:21 final size:21
Alignment explanation
Indices: 162214--162253 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
162204 ATGTTGATGA
* * *
162214 GGGAAATGATAGTGGTTTCGT
1 GGGAAATGACACTGATTTCGT
162235 GGGAAATGACACTGATTTC
1 GGGAAATGACACTGATTTC
162254 CATGATGAGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.10, G:0.33, T:0.30
Consensus pattern (21 bp):
GGGAAATGACACTGATTTCGT
Found at i:171596 original size:20 final size:21
Alignment explanation
Indices: 171567--171605 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
171557 CTTAAAAAAC
*
171567 GATTTTGTT-AATAGTTAAAT
1 GATTTCGTTAAATAGTTAAAT
171587 GATTTCGTTAAATAGTTAA
1 GATTTCGTTAAATAGTTAA
171606 CGACGTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.46
Consensus pattern (21 bp):
GATTTCGTTAAATAGTTAAAT
Found at i:176139 original size:16 final size:16
Alignment explanation
Indices: 176118--176148 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
176108 TAATATTGAA
176118 ACTTGAACTCAAAAAG
1 ACTTGAACTCAAAAAG
176134 ACTTGAACTCAAAAA
1 ACTTGAACTCAAAAA
176149 AAATTAGAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.19, G:0.10, T:0.19
Consensus pattern (16 bp):
ACTTGAACTCAAAAAG
Found at i:196780 original size:14 final size:14
Alignment explanation
Indices: 196761--196789 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
196751 TATTGACTTA
196761 AAGCCCTAAATTAT
1 AAGCCCTAAATTAT
196775 AAGCCCTAAATTAT
1 AAGCCCTAAATTAT
196789 A
1 A
196790 GTTTATGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.21, G:0.07, T:0.28
Consensus pattern (14 bp):
AAGCCCTAAATTAT
Found at i:197099 original size:20 final size:21
Alignment explanation
Indices: 197066--197104 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
197056 AAATTTCCGA
197066 TAAATTATACG-TTTAGTACC
1 TAAATTATACGTTTTAGTACC
197086 TAAATTAT-CAGTTTTAGTA
1 TAAATTATAC-GTTTTAGTA
197105 TATTTTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 1 0.06
20 9 0.53
21 7 0.41
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (21 bp):
TAAATTATACGTTTTAGTACC
Found at i:202565 original size:18 final size:19
Alignment explanation
Indices: 202527--202565 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
202517 AAGAAAACAC
*
202527 TCTTTTGATTTGTAATTTT
1 TCTTTTGATTTGTAATCTT
*
202546 TCTTTTG-TTTTTAATCTT
1 TCTTTTGATTTGTAATCTT
202564 TC
1 TC
202566 CGTACTCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.13, C:0.10, G:0.08, T:0.69
Consensus pattern (19 bp):
TCTTTTGATTTGTAATCTT
Found at i:203131 original size:41 final size:41
Alignment explanation
Indices: 203072--203172 Score: 98
Period size: 41 Copynumber: 2.4 Consensus size: 41
203062 ATGAATAGTT
**
203072 AAATAACTATTTGGTAATTTCTAA-AAGTC-AGATAACTTAAAA
1 AAATAA-TATTTTATAATTTCTAATAA-TCGAGA-AACTTAAAA
* **
203114 AAATAATATTTTATAATTTTTAATAATCGAGAAACTTATTA
1 AAATAATATTTTATAATTTCTAATAATCGAGAAACTTAAAA
* *
203155 AAATATTATCTTATAATT
1 AAATAATATTTTATAATT
203173 AAATGATCAA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
41 39 0.78
42 11 0.22
ACGTcount: A:0.47, C:0.07, G:0.06, T:0.41
Consensus pattern (41 bp):
AAATAATATTTTATAATTTCTAATAATCGAGAAACTTAAAA
Found at i:204918 original size:29 final size:29
Alignment explanation
Indices: 204876--204950 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
204866 AACCCAACCA
**
204876 TAGGTCGCCATGCACTCCCAGCGACCTCC
1 TAGGTCGCCATGCACTCCCAGCGACCAAC
* * *
204905 TAGGTCGCCATGCACGCCCGGCGACCAAG
1 TAGGTCGCCATGCACTCCCAGCGACCAAC
*
204934 GAGGTCGCCATGCACTC
1 TAGGTCGCCATGCACTC
204951 GGGGCGACCA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.19, C:0.40, G:0.27, T:0.15
Consensus pattern (29 bp):
TAGGTCGCCATGCACTCCCAGCGACCAAC
Found at i:204956 original size:29 final size:29
Alignment explanation
Indices: 204877--204964 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
204867 ACCCAACCAT
* * ****
204877 AGGTCGCCATGCACTCCCAGCGACCTCCT
1 AGGTCGCCATGCACGCCCGGCGACCAAGG
204906 AGGTCGCCATGCACGCCCGGCGACCAAGG
1 AGGTCGCCATGCACGCCCGGCGACCAAGG
* **
204935 AGGTCGCCATGCACTCGGGGCGACCAAGG
1 AGGTCGCCATGCACGCCCGGCGACCAAGG
204964 A
1 A
204965 TTCATGCATG
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.20, C:0.38, G:0.31, T:0.11
Consensus pattern (29 bp):
AGGTCGCCATGCACGCCCGGCGACCAAGG
Found at i:205041 original size:15 final size:15
Alignment explanation
Indices: 205021--205050 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
205011 CATGGGGCAC
205021 TCGAGGCGACCAAGG
1 TCGAGGCGACCAAGG
205036 TCGAGGCGACCAAGG
1 TCGAGGCGACCAAGG
205051 ATGACCAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.40, T:0.07
Consensus pattern (15 bp):
TCGAGGCGACCAAGG
Found at i:205227 original size:29 final size:29
Alignment explanation
Indices: 205194--205278 Score: 107
Period size: 29 Copynumber: 2.9 Consensus size: 29
205184 AGCAGGGGAT
* * **
205194 GTCGCCGCGAGTGCATGGCGACCTCCTTG
1 GTCGCCGGGAGTGCATGGCGACCTACGAG
* *
205223 GTCGCCGGGCGTGCATGGCGACCTAGGAG
1 GTCGCCGGGAGTGCATGGCGACCTACGAG
*
205252 GTCGCTGGGAGTGCATGGCGACCTACG
1 GTCGCCGGGAGTGCATGGCGACCTACG
205279 GCCACTGTTG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.13, C:0.29, G:0.40, T:0.18
Consensus pattern (29 bp):
GTCGCCGGGAGTGCATGGCGACCTACGAG
Found at i:206129 original size:29 final size:29
Alignment explanation
Indices: 206094--206149 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
206084 GTGTTGACCG
*
206094 TAGGTCGTCATGCACTCCGGGCGACCTTA
1 TAGGTCGTCATGCACTCAGGGCGACCTTA
206123 TAGGTCGTCATGCACTCAGGGCGACCT
1 TAGGTCGTCATGCACTCAGGGCGACCT
206150 ACCCTTACTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.18, C:0.30, G:0.29, T:0.23
Consensus pattern (29 bp):
TAGGTCGTCATGCACTCAGGGCGACCTTA
Found at i:206241 original size:29 final size:29
Alignment explanation
Indices: 206208--206292 Score: 125
Period size: 29 Copynumber: 2.9 Consensus size: 29
206198 TCCCAACACA
* *
206208 TAGGTCGTCATGCCCTCCGGGCGACCTTG
1 TAGGTCGCCATGCACTCCGGGCGACCTTG
* *
206237 TAGGTCGCCATGCGCTCCGGACGACCTTG
1 TAGGTCGCCATGCACTCCGGGCGACCTTG
*
206266 TAGGTCGCCATGCACTCTGGGCGACCT
1 TAGGTCGCCATGCACTCCGGGCGACCT
206293 ACCCTCGCTC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.13, C:0.34, G:0.31, T:0.22
Consensus pattern (29 bp):
TAGGTCGCCATGCACTCCGGGCGACCTTG
Found at i:206330 original size:23 final size:23
Alignment explanation
Indices: 206300--206344 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
206290 CCTACCCTCG
206300 CTCGGCTTCCCTCGCATAGCTCA
1 CTCGGCTTCCCTCGCATAGCTCA
206323 CTCGGCTTCCCTCGCATAGCTC
1 CTCGGCTTCCCTCGCATAGCTC
206345 GCATAGCTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.11, C:0.44, G:0.18, T:0.27
Consensus pattern (23 bp):
CTCGGCTTCCCTCGCATAGCTCA
Found at i:210317 original size:33 final size:33
Alignment explanation
Indices: 210275--210342 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
210265 GGGAGACAAT
210275 AATGCATAATAAGATCGATCAAAAGATCATCGA
1 AATGCATAATAAGATCGATCAAAAGATCATCGA
* *
210308 AATGCATAATAAGATTGATCAAAAGATCATGGA
1 AATGCATAATAAGATCGATCAAAAGATCATCGA
210341 AA
1 AA
210343 AGACCCGCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.50, C:0.12, G:0.16, T:0.22
Consensus pattern (33 bp):
AATGCATAATAAGATCGATCAAAAGATCATCGA
Found at i:212715 original size:22 final size:20
Alignment explanation
Indices: 212652--212700 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
212642 GAAACTACTG
212652 GAGCTGAAAAATAGCAACTT
1 GAGCTGAAAAATAGCAACTT
212672 GAGCTGAAAAATAGCAACTT
1 GAGCTGAAAAATAGCAACTT
212692 GAGCTGAAA
1 GAGCTGAAA
212701 GACAAAGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.45, C:0.14, G:0.22, T:0.18
Consensus pattern (20 bp):
GAGCTGAAAAATAGCAACTT
Found at i:214369 original size:25 final size:23
Alignment explanation
Indices: 214340--214393 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
214330 TTCTTAAGTT
*
214340 ATTATTATAAATAATATTTTTTTAA
1 ATTATAATAAAT-ATATTTTTTT-A
*
214365 ATTATAATCAATATATTTTTTTA
1 ATTATAATAAATATATTTTTTTA
214388 ATTATA
1 ATTATA
214394 TAGTCAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 7 0.26
24 10 0.37
25 10 0.37
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (23 bp):
ATTATAATAAATATATTTTTTTA
Found at i:214371 original size:22 final size:24
Alignment explanation
Indices: 214343--214393 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
214333 TTAAGTTATT
214343 ATTATAAAT-AATAT-TTTTTTAA
1 ATTATAAATCAATATATTTTTTAA
*
214365 ATTAT-AATCAATATATTTTTTTA
1 ATTATAAATCAATATATTTTTTAA
214388 ATTATA
1 ATTATA
214394 TAGTCAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 3 0.12
22 10 0.40
23 12 0.48
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (24 bp):
ATTATAAATCAATATATTTTTTAA
Found at i:214407 original size:25 final size:24
Alignment explanation
Indices: 214355--214408 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
214345 TATAAATAAT
* *
214355 ATTTTTTTAAATTATAATCAATAT
1 ATTTTTTTAAATTATAATCAAAAA
214379 ATTTTTTT-AATTATATAGTCAAAAA
1 ATTTTTTTAAATTATA-A-TCAAAAA
214404 ATTTT
1 ATTTT
214409 AAAAAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 7 0.27
24 9 0.35
25 10 0.38
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.54
Consensus pattern (24 bp):
ATTTTTTTAAATTATAATCAAAAA
Found at i:214771 original size:88 final size:88
Alignment explanation
Indices: 214613--214810 Score: 335
Period size: 88 Copynumber: 2.3 Consensus size: 88
214603 TTTATTTTAG
*
214613 TAGTCTTTCGACTATACAAGTATACAAGTGGTTCTCCAACTAAATGGTATTGTTTTATTAAATCC
1 TAGTCTTTCGACTATACAAGTATACAAGTGGTTCTCCAACTAAATGGTATTGTTTTATTAAACCC
*
214678 TTCAATTATTAAAAGTTATAAAA
66 CTCAATTATTAAAAGTTATAAAA
* * *
214701 TAGTCTTTCGACTATACAAGTATACAAGTGGTTCTCCGACTACATGGTATTGTTTTATTAAGCCC
1 TAGTCTTTCGACTATACAAGTATACAAGTGGTTCTCCAACTAAATGGTATTGTTTTATTAAACCC
214766 CTCAATTATTAAAAGTTATAAAA
66 CTCAATTATTAAAAGTTATAAAA
*
214789 TAGTCATTCGACTATA-AAGTAT
1 TAGTCTTTCGACTATACAAGTAT
214811 TACTTTGTTG
Statistics
Matches: 104, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
87 6 0.06
88 98 0.94
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (88 bp):
TAGTCTTTCGACTATACAAGTATACAAGTGGTTCTCCAACTAAATGGTATTGTTTTATTAAACCC
CTCAATTATTAAAAGTTATAAAA
Found at i:221911 original size:14 final size:16
Alignment explanation
Indices: 221882--221913 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
221872 CGTTCGTGAA
221882 CGTTCGATTATATGTT
1 CGTTCGATTATATGTT
221898 CGTTC-ATT-TATGTT
1 CGTTCGATTATATGTT
221912 CG
1 CG
221914 AACAGAGTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 3 0.19
16 5 0.31
ACGTcount: A:0.16, C:0.16, G:0.19, T:0.50
Consensus pattern (16 bp):
CGTTCGATTATATGTT
Found at i:230901 original size:29 final size:29
Alignment explanation
Indices: 230869--230932 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
230859 GTAACATATA
*
230869 AATAGTCGACTGA-C-TTTTTTGCAACTTTT
1 AATAGTCGAATGACCATTTTTT--AACTTTT
* *
230898 AATAATTGAATGACCATTTTTTAACTTTT
1 AATAGTCGAATGACCATTTTTTAACTTTT
230927 AATAGT
1 AATAGT
230933 TGAGAGATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
29 22 0.76
30 1 0.03
31 6 0.21
ACGTcount: A:0.31, C:0.12, G:0.11, T:0.45
Consensus pattern (29 bp):
AATAGTCGAATGACCATTTTTTAACTTTT
Found at i:232451 original size:19 final size:20
Alignment explanation
Indices: 232427--232468 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
232417 ATCCGACCCG
232427 AAATAATACATTT-GTTAAA
1 AAATAATACATTTAGTTAAA
* *
232446 AAATAATACTTTTATTTAAA
1 AAATAATACATTTAGTTAAA
232466 AAA
1 AAA
232469 ATAGAGAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (20 bp):
AAATAATACATTTAGTTAAA
Found at i:233142 original size:3 final size:3
Alignment explanation
Indices: 233134--233197 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
233124 ATAACTCTCG
233134 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
233182 TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA T
233198 CATCATTTTA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:233502 original size:31 final size:31
Alignment explanation
Indices: 233467--233540 Score: 96
Period size: 32 Copynumber: 2.4 Consensus size: 31
233457 TTAAAAAATA
* *
233467 TAAGATATGATTAA-TTTTGTTTTTATTTAAT
1 TAAGATATG-GTAATTTTTGTTCTTATTTAAT
233498 TAAGATATGGTAATTTTTTGTTCTTATTTAAT
1 TAAGATATGGTAA-TTTTTGTTCTTATTTAAT
*
233530 TAAGATGTGGT
1 TAAGATATGGT
233541 CATCACGGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 3 0.08
31 9 0.24
32 26 0.68
ACGTcount: A:0.30, C:0.01, G:0.15, T:0.54
Consensus pattern (31 bp):
TAAGATATGGTAATTTTTGTTCTTATTTAAT
Found at i:233706 original size:27 final size:27
Alignment explanation
Indices: 233676--233739 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
233666 CTCAAAATAT
233676 ATATTTTTAAATGAAAATAAAAATAAA
1 ATATTTTTAAATGAAAATAAAAATAAA
* ** *
233703 ATATTTTTAAATTAAGTTAATAATAAA
1 ATATTTTTAAATGAAAATAAAAATAAA
*
233730 ATATATTTAA
1 ATATTTTTAA
233740 TAAGTGAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (27 bp):
ATATTTTTAAATGAAAATAAAAATAAA
Found at i:233749 original size:25 final size:27
Alignment explanation
Indices: 233697--233761 Score: 82
Period size: 25 Copynumber: 2.5 Consensus size: 27
233687 TGAAAATAAA
* *
233697 AATAAAATATTTTTAAATTAAGTTAAT
1 AATAAAATATATTTAAATTAAGTGAAT
233724 AATAAAATATATTT-AA-TAAGTGAAT
1 AATAAAATATATTTAAATTAAGTGAAT
*
233749 ATTAAAA-ATATTT
1 AATAAAATATATTT
233762 TTTAAGTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
24 6 0.17
25 14 0.40
26 2 0.06
27 13 0.37
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.42
Consensus pattern (27 bp):
AATAAAATATATTTAAATTAAGTGAAT
Found at i:233765 original size:27 final size:27
Alignment explanation
Indices: 233697--233786 Score: 82
Period size: 26 Copynumber: 3.4 Consensus size: 27
233687 TGAAAATAAA
* *
233697 AATAAAATATTTTTAAATTAAGTTAAT
1 AATAAAATATTTTTTAATTAAGTGAAT
*
233724 AATAAAATA-TATTTAA-TAAGTGAAT
1 AATAAAATATTTTTTAATTAAGTGAAT
*
233749 ATTAAAAATATTTTTTAAGTTAA-T--AT
1 AAT-AAAATATTTTTTAA-TTAAGTGAAT
233775 ATATAAAATATT
1 A-ATAAAATATT
233787 AGCATATTTA
Statistics
Matches: 52, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
25 10 0.19
26 22 0.42
27 16 0.31
28 1 0.02
29 3 0.06
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.43
Consensus pattern (27 bp):
AATAAAATATTTTTTAATTAAGTGAAT
Found at i:233776 original size:26 final size:25
Alignment explanation
Indices: 233713--233786 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 25
233703 ATATTTTTAA
233713 ATTAAGTTAATA-ATAAAATATATTT
1 ATTAAGTTAATATATAAAA-ATATTT
* *
233738 AATAAGTGAATAT-TAAAAATATTT
1 ATTAAGTTAATATATAAAAATATTT
*
233762 TTTAAGTTAATATATATAAAATATT
1 ATTAAGTTAATATATA-AAAATATT
233787 AGCATATTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
24 16 0.39
25 17 0.41
26 8 0.20
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.43
Consensus pattern (25 bp):
ATTAAGTTAATATATAAAAATATTT
Found at i:234054 original size:31 final size:31
Alignment explanation
Indices: 234011--234086 Score: 125
Period size: 31 Copynumber: 2.5 Consensus size: 31
234001 TTAACTCGGG
*
234011 GTGACCACATCTTAATTAAATAAAAACGAAA
1 GTGACCATATCTTAATTAAATAAAAACGAAA
*
234042 GTGATCATATCTTAATTAAATAAAAACGAAA
1 GTGACCATATCTTAATTAAATAAAAACGAAA
*
234073 GTGGCCATATCTTA
1 GTGACCATATCTTA
234087 TGTTTTTTGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.28
Consensus pattern (31 bp):
GTGACCATATCTTAATTAAATAAAAACGAAA
Found at i:236964 original size:30 final size:30
Alignment explanation
Indices: 236929--237105 Score: 171
Period size: 30 Copynumber: 5.8 Consensus size: 30
236919 TTTGCAACTT
236929 ATGTAAATGCAGCTCCTGCGACTGCAGTTC
1 ATGTAAATGCAGCTCCTGCGACTGCAGTTC
* * * *
236959 TTGTAAGTGCAGTAGCTCATGCGACTGCAATTC
1 ATGTAAATGC---AGCTCCTGCGACTGCAGTTC
* * *
236992 CTGTAAATGCAGCTTGTCTG-GCCTG-AGTTC
1 ATGTAAATGCAGC-T-CCTGCGACTGCAGTTC
* * * *
237022 ATGCAAGTGCCGC-CCATGTGACTGCAGTTC
1 ATGTAAATGCAGCTCC-TGCGACTGCAGTTC
237052 ATGTAAATGCAGCTCCTGCGACTGCAGTTC
1 ATGTAAATGCAGCTCCTGCGACTGCAGTTC
*
237082 ATGTAAATGCAGCTCGTGCGACTG
1 ATGTAAATGCAGCTCCTGCGACTG
237106 TTGCTCGTGT
Statistics
Matches: 117, Mismatches: 21, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
27 1 0.01
28 2 0.02
29 4 0.03
30 75 0.64
31 7 0.06
32 2 0.02
33 26 0.22
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.28
Consensus pattern (30 bp):
ATGTAAATGCAGCTCCTGCGACTGCAGTTC
Found at i:236982 original size:33 final size:33
Alignment explanation
Indices: 236939--237003 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
236929 ATGTAAATGC
* * * *
236939 AGCTCCTGCGACTGCAGTTCTTGTAAGTGCAGT
1 AGCTCATGCGACTGCAATTCCTGTAAATGCAGT
236972 AGCTCATGCGACTGCAATTCCTGTAAATGCAG
1 AGCTCATGCGACTGCAATTCCTGTAAATGCAG
237004 CTTGTCTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (33 bp):
AGCTCATGCGACTGCAATTCCTGTAAATGCAGT
Found at i:237054 original size:15 final size:15
Alignment explanation
Indices: 237036--237085 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
237026 AAGTGCCGCC
237036 CATGTGACTGCAGTT
1 CATGTGACTGCAGTT
* * *
237051 CATGTAAATGCAGCT
1 CATGTGACTGCAGTT
* *
237066 CCTGCGACTGCAGTT
1 CATGTGACTGCAGTT
237081 CATGT
1 CATGT
237086 AAATGCAGCT
Statistics
Matches: 25, Mismatches: 10, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (15 bp):
CATGTGACTGCAGTT
Found at i:237092 original size:15 final size:15
Alignment explanation
Indices: 237044--237093 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
237034 CCCATGTGAC
237044 TGCAGTTCATGTAAA
1 TGCAGTTCATGTAAA
* * ** *
237059 TGCAGCTCCTGCGAC
1 TGCAGTTCATGTAAA
237074 TGCAGTTCATGTAAA
1 TGCAGTTCATGTAAA
237089 TGCAG
1 TGCAG
237094 CTCGTGCGAC
Statistics
Matches: 25, Mismatches: 10, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (15 bp):
TGCAGTTCATGTAAA
Found at i:237105 original size:60 final size:60
Alignment explanation
Indices: 236899--237105 Score: 206
Period size: 60 Copynumber: 3.4 Consensus size: 60
236889 ACTGTGGTAT
* *
236899 ATGTAACTGCAGCTCATGC-ATTTGCAACTT-ATGTAAATGCAGCTCCTGCGACTGCAGTTC
1 ATGTAAGTGCAGCTCATGCGA-CTGCAA-TTCATGTAAATGCAGCTCCTGCGACTGCAGTTC
* * * *
236959 TTGTAAGTGCAGTAGCTCATGCGACTGCAATTCCTGTAAATGCAGCTTGTCTG-GCCTG-AGTTC
1 ATGTAAGTGC---AGCTCATGCGACTGCAATTCATGTAAATGCAGC-T-CCTGCGACTGCAGTTC
* * * * *
237022 ATGCAAGTGCCGCCCATGTGACTGCAGTTCATGTAAATGCAGCTCCTGCGACTGCAGTTC
1 ATGTAAGTGCAGCTCATGCGACTGCAATTCATGTAAATGCAGCTCCTGCGACTGCAGTTC
* *
237082 ATGTAAATGCAGCTCGTGCGACTG
1 ATGTAAGTGCAGCTCATGCGACTG
237106 TTGCTCGTGT
Statistics
Matches: 117, Mismatches: 21, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
58 3 0.03
59 5 0.04
60 59 0.50
62 2 0.02
63 39 0.33
64 6 0.05
65 3 0.03
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.29
Consensus pattern (60 bp):
ATGTAAGTGCAGCTCATGCGACTGCAATTCATGTAAATGCAGCTCCTGCGACTGCAGTTC
Found at i:237166 original size:63 final size:63
Alignment explanation
Indices: 237082--237337 Score: 361
Period size: 63 Copynumber: 4.1 Consensus size: 63
237072 ACTGCAGTTC
* * * *
237082 ATGTAAATGCAGCTCGTGCGACTGTTGCTCGTGTTCAAGCTGCTGCACAATCCCGAAATGGCG
1 ATGTAAATGCAGCTCATGCGACTGCTGTTCGTGTTCAAGCTGCTGCACGATCCCGAAATGGCG
*
237145 ATGTAAATGCCA-CTCATGCGACTGCTGTTCGTGTTTAAGCTGCTGCACGATCCCGAAATGGCG
1 ATGTAAATG-CAGCTCATGCGACTGCTGTTCGTGTTCAAGCTGCTGCACGATCCCGAAATGGCG
* * * *
237208 ATGCAAGTGCAGCTCTTGCGACTGCTGTTCGTGTTTAAGCTGCTGCACGATCCCGAAATGGCG
1 ATGTAAATGCAGCTCATGCGACTGCTGTTCGTGTTCAAGCTGCTGCACGATCCCGAAATGGCG
* * * * * *
237271 ATGCAAGTGCAGCTCATTCGATTGCTGTTCGTGTTCAAGCTGCTGCACGATCCCGAAGTGGCA
1 ATGTAAATGCAGCTCATGCGACTGCTGTTCGTGTTCAAGCTGCTGCACGATCCCGAAATGGCG
237334 ATGT
1 ATGT
237338 TTCTCGTGTC
Statistics
Matches: 176, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
62 2 0.01
63 172 0.98
64 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (63 bp):
ATGTAAATGCAGCTCATGCGACTGCTGTTCGTGTTCAAGCTGCTGCACGATCCCGAAATGGCG
Found at i:237731 original size:23 final size:23
Alignment explanation
Indices: 237701--237749 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
237691 CAAAAAATGT
237701 TGGCCGACTGTGAGAGAGGACGA
1 TGGCCGACTGTGAGAGAGGACGA
237724 TGGCCGACTGTGAGAGAGGACGA
1 TGGCCGACTGTGAGAGAGGACGA
237747 TGG
1 TGG
237750 ACCTCTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.24, C:0.16, G:0.45, T:0.14
Consensus pattern (23 bp):
TGGCCGACTGTGAGAGAGGACGA
Found at i:242078 original size:20 final size:21
Alignment explanation
Indices: 242041--242085 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
242031 AAAAATTGTA
242041 TTTAATACTTAAACTTTTAAT
1 TTTAATACTTAAACTTTTAAT
* *
242062 TTTAATA-TATAAATTTTTATT
1 TTTAATACT-TAAACTTTTAAT
242083 TTT
1 TTT
242086 TTAAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTAATACTTAAACTTTTAAT
Found at i:242337 original size:16 final size:17
Alignment explanation
Indices: 242316--242356 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
242306 GAGATTTTGA
*
242316 AAATATTAAAA-AAATT
1 AAATATTAAAATAAATC
242332 AAATATTAAAATAAATC
1 AAATATTAAAATAAATC
242349 AAA-ATTAA
1 AAATATTAA
242357 TAATTTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (17 bp):
AAATATTAAAATAAATC
Found at i:243944 original size:23 final size:23
Alignment explanation
Indices: 243910--243965 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
243900 ATCTGTGCGA
*
243910 AACTTGGATATAGTGAAGTTTCC
1 AACTTGGGTATAGTGAAGTTTCC
243933 AACTTGGGTATAGTGAAGTTTCC
1 AACTTGGGTATAGTGAAGTTTCC
243956 AACTTGGGTA
1 AACTTGGGTA
243966 CTTATCTTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (23 bp):
AACTTGGGTATAGTGAAGTTTCC
Found at i:244808 original size:9 final size:9
Alignment explanation
Indices: 244796--244847 Score: 54
Period size: 9 Copynumber: 6.0 Consensus size: 9
244786 ATATATAACT
244796 AATATAAAA
1 AATATAAAA
244805 AATATAAAA
1 AATATAAAA
*
244814 AAT-T-ATA
1 AATATAAAA
* **
244821 TATATAATT
1 AATATAAAA
244830 AATATAAAA
1 AATATAAAA
244839 AATATAAAA
1 AATATAAAA
244848 TATTATATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 4 0.11
8 2 0.06
9 29 0.83
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
AATATAAAA
Done.