Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008595.1 Hibiscus syriacus cultivar Beakdansim tig00111544_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53556

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2630--2684
3
18.3
3
81
7
58
58
5
0
36
1.21
2756--2893
68
2.0
68
84
9
181
44
4
5
44
1.47
2718--2879
36
4.7
35
73
15
131
44
3
5
46
1.44
3066--3104
4
9.5
4
83
5
51
28
2
0
69
1.02
4416--4473
26
2.3
26
82
11
68
17
8
0
74
1.06
5849--5932
43
2.0
43
97
0
159
29
13
30
26
1.93
6191--6235
19
2.4
19
88
3
65
11
15
8
64
1.49
9595--10487
84
10.9
82
81
6
970
29
25
20
23
1.99
9613--10512
164
5.5
164
84
4
1073
29
25
21
24
1.99
9605--10512
247
3.7
246
84
4
1098
29
25
21
23
1.99
11067--11382
38
8.7
36
73
14
238
46
4
5
43
1.46
11433--11473
7
5.9
7
86
10
50
29
2
0
68
1.03
12554--12608
2
27.5
2
100
0
110
49
0
0
50
1.00
12836--12894
26
2.3
26
81
13
70
16
8
0
74
1.05
14111--14199
34
2.7
32
77
10
90
39
0
2
58
1.11
15909--15956
21
2.3
21
85
0
60
25
39
12
22
1.89
15960--16053
21
4.5
21
92
5
129
18
35
26
20
1.95
16574--16669
33
2.9
34
83
7
126
55
4
3
37
1.35
17056--17657
125
4.8
125
97
0
1116
32
19
26
22
1.97
17056--17657
251
2.4
250
96
1
1116
32
19
26
22
1.97
17725--17765
8
5.2
8
82
5
57
36
29
0
34
1.58
20755--20792
13
3.0
13
88
3
60
44
0
0
55
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20806--20859
20
2.7
20
94
2
90
42
12
3
40
1.61
24257--24287
12
2.6
12
94
0
53
22
3
9
64
1.38
28751--28805
2
30.0
2
75
17
57
52
0
0
47
1.00
28749--28824
22
3.5
22
78
16
70
52
0
0
47
1.00
28786--28823
16
2.4
17
83
16
55
55
0
0
44
0.99
28785--28829
22
2.0
22
87
8
65
53
0
0
46
1.00
29205--29557
73
4.8
73
95
1
634
38
13
17
31
1.88
29205--29557
147
2.4
146
96
0
652
38
13
17
31
1.88
29599--29923
165
2.0
165
89
1
499
38
12
12
35
1.82
41380--41438
26
2.3
26
96
0
109
35
15
13
35
1.87
42231--42284
2
29.5
2
75
17
55
55
0
0
44
0.99
42256--42298
3
13.3
3
85
9
50
60
0
0
39
0.97
45621--45712
24
4.0
24
68
18
68
42
2
7
47
1.44
46492--46566
25
3.0
25
96
3
143
45
14
12
28
1.80
46813--46888
35
2.2
35
92
0
125
39
23
1
35
1.63
47853--47913
26
2.3
26
82
5
68
45
1
3
49
1.28
50971--51000
14
2.2
13
94
5
51
66
0
0
33
0.92

Tables:   1

The End!