genome.fa.s8597.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008597.1 Hibiscus syriacus cultivar Beakdansim tig00111546_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105663

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3176--3234	28	2.1	29	90	3	93	44	3	6	45	1.47
7011--7073	15	4.4	14	75	18	58	52	6	0	41	1.27
9677--9757	23	3.6	22	85	6	108	23	14	7	54	1.66
15442--15483	20	2.1	20	95	0	75	47	4	21	26	1.70
33675--33711	18	2.1	18	94	0	65	24	16	29	29	1.96
35399--35437	18	2.2	18	95	4	71	64	2	0	33	1.08
40351--40384	6	5.7	6	100	0	68	32	35	0	32	1.58
41066--41097	13	2.5	13	100	0	64	43	9	9	37	1.69
41475--41550	21	3.6	21	80	7	91	25	23	23	27	2.00
41539--41595	25	2.5	22	86	13	73	22	22	17	36	1.94
41538--41589	25	2.1	25	100	0	104	25	23	15	36	1.93
41583--41636	21	2.6	21	90	0	81	22	22	25	29	1.99
46603--47012	205	2.0	205	99	0	802	29	16	15	39	1.89
48218--48251	2	17.0	2	100	0	68	50	0	0	50	1.00
49548--49586	17	2.4	17	95	4	71	43	0	5	51	1.24
60938--60977	21	2.0	21	90	5	64	45	7	7	40	1.61
69145--69196	20	2.6	20	96	0	95	38	26	13	21	1.90
69186--69284	21	4.8	20	72	6	72	36	23	19	21	1.95
69251--69444	20	9.6	20	81	5	221	35	25	19	19	1.95
69251--69444	60	3.2	60	83	0	253	35	25	19	19	1.95
69826--69896	33	2.2	33	92	0	115	11	22	18	47	1.80
70017--70071	14	3.6	14	73	21	56	40	23	27	9	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70017--70087	33	2.2	33	92	0	115	42	25	23	8	1.82
70083--70180	19	5.7	19	70	22	81	10	24	22	42	1.84
70105--70194	14	5.7	14	74	23	81	8	25	23	42	1.83
70088--70202	33	3.5	33	95	0	212	9	24	20	45	1.81
71900--72371	185	2.5	186	98	0	921	22	12	19	46	1.83
71900--72371	93	5.1	93	98	0	921	22	12	19	46	1.83
72415--72549	19	7.6	19	74	16	110	45	26	18	9	1.80
72451--72544	33	2.9	32	88	4	152	46	25	19	8	1.77
72415--72549	52	2.6	51	74	15	141	45	26	18	9	1.80
72545--72673	19	7.3	19	74	17	107	10	17	23	48	1.79
72562--72617	14	3.6	14	76	21	58	10	19	23	46	1.81
72545--72636	33	2.8	33	91	0	148	10	19	20	48	1.78
74571--74606	14	2.6	14	95	0	63	33	0	22	44	1.53
74712--74811	19	5.6	19	79	16	124	44	17	23	16	1.87
74818--75145	33	9.5	33	78	15	217	14	20	18	46	1.83
74840--75145	19	17.4	19	79	16	356	14	19	18	47	1.82
74840--75117	52	5.2	52	90	6	352	14	20	17	47	1.82
77444--77468	13	1.9	13	100	0	50	0	24	0	76	0.80
78359--78727	20	18.5	20	86	4	458	20	18	26	34	1.96
79038--79079	19	2.1	21	82	8	52	9	0	26	64	1.24
83742--83789	24	2.0	24	83	0	60	62	6	4	27	1.38
84134--84337	73	2.7	75	82	11	240	44	3	6	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84314--84402	32	2.8	32	91	1	133	46	3	6	43	1.46
86189--86251	19	3.3	20	78	10	60	52	7	0	39	1.31
87220--87249	15	2.0	15	93	0	51	6	40	3	50	1.45
98809--98871	26	2.4	26	97	0	117	31	19	11	38	1.86

Tables:   1

The End!