genome.fa.s8598.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008598.1 Hibiscus syriacus cultivar Beakdansim tig00111549_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51885

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1932--1976	14	3.5	13	77	17	58	64	0	0	35	0.94
1927--1965	15	2.7	14	84	15	53	61	2	0	35	1.10
2396--2427	15	2.1	15	94	0	55	59	0	0	40	0.97
2593--2643	24	2.1	24	82	7	59	54	0	3	41	1.19
3105--3132	14	2.0	14	100	0	56	28	7	35	28	1.84
11383--11431	24	2.0	24	100	0	98	32	24	12	30	1.92
16848--16893	20	2.3	19	85	14	58	26	15	8	50	1.73
29646--29715	3	23.3	3	80	13	74	71	0	0	28	0.86
30083--30575	36	14.1	36	74	16	398	39	13	19	27	1.89
30185--30575	137	2.8	137	89	3	563	39	13	19	28	1.89
30344--30408	21	3.4	21	68	24	70	41	12	21	24	1.87
32561--32641	27	3.1	26	73	18	78	6	8	2	82	0.91
32566--32644	10	8.0	9	75	15	59	6	8	2	82	0.93
32624--32661	14	2.6	15	83	4	51	0	18	5	76	0.97
34660--34699	16	2.4	17	88	12	57	72	0	17	10	1.11
36814--36858	3	15.7	3	82	17	60	68	0	0	31	0.89
41023--41391	20	18.5	20	84	4	449	34	26	18	20	1.96
42070--42116	24	2.0	24	87	8	69	25	14	21	38	1.92
42291--42315	12	2.1	12	100	0	50	72	0	28	0	0.86
44591--44909	19	18.4	19	77	19	351	46	18	21	13	1.83
44591--44890	33	8.8	32	74	19	197	46	18	21	13	1.83
44673--44931	33	7.6	34	81	13	238	46	17	21	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44619--44931	52	6.0	52	84	10	410	46	17	21	14	1.84
44938--45039	19	5.6	19	85	12	151	14	23	17	44	1.86
45146--45181	13	2.6	14	86	4	56	47	22	0	30	1.52
47093--47226	19	7.6	19	73	18	101	47	23	17	11	1.80
47128--47221	32	2.9	32	90	1	152	50	21	18	10	1.77
47222--47350	19	7.3	19	74	17	116	9	17	27	45	1.78
47222--47313	33	2.8	33	91	3	141	8	18	27	45	1.78
47381--47836	93	5.0	92	95	3	822	45	19	12	22	1.84
49515--49613	33	3.1	33	88	2	148	43	21	25	10	1.83
49521--49608	14	5.6	14	71	21	68	44	22	23	9	1.81
49625--49679	14	3.6	14	73	21	56	9	25	23	41	1.83
49609--49679	33	2.2	33	94	0	124	8	22	25	43	1.81
49620--49701	33	2.5	33	89	2	119	9	25	21	42	1.84
49665--49720	20	2.8	20	86	0	76	14	26	17	41	1.88
49799--49869	33	2.2	33	92	0	115	47	18	22	11	1.80
50246--50438	20	9.6	20	82	5	219	19	19	25	35	1.95
50246--50438	60	3.2	60	83	0	251	19	19	25	35	1.95
50494--50545	20	2.6	20	96	0	95	21	13	26	38	1.90

Tables:   1

The End!