genome.fa.s8605.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008605.1 Hibiscus syriacus cultivar Beakdansim tig00111561_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71030

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10432--10510	38	2.1	38	92	0	131	15	21	10	53	1.71
14732--14771	21	1.9	21	89	0	62	30	0	20	50	1.49
16004--16059	3	19.0	3	81	3	69	37	1	0	60	1.07
16693--16729	16	2.3	16	100	0	74	48	16	27	8	1.74
17439--17533	18	5.2	18	74	18	56	28	5	2	64	1.27
17679--18059	140	2.7	140	93	2	644	37	6	8	48	1.58
17773--17850	41	1.9	41	81	5	95	38	0	3	57	1.17
17913--17990	41	1.9	41	81	5	95	38	0	3	57	1.17
24803--24844	18	2.3	18	84	8	59	14	57	28	0	1.38
25828--25981	79	1.9	79	97	0	290	36	12	9	40	1.77
31312--31561	135	1.9	135	89	3	396	39	18	12	30	1.88
32471--32537	35	1.9	35	96	0	125	25	25	14	34	1.94
32859--32949	47	1.9	47	95	0	164	25	8	7	58	1.55
33392--33443	21	2.5	21	81	3	61	38	19	25	17	1.93
33432--33545	20	5.7	20	83	6	104	32	24	18	24	1.97
33429--33545	61	1.9	61	83	0	153	34	23	17	23	1.96
34103--34144	19	2.2	19	86	0	57	50	28	16	4	1.66
34140--34265	19	7.1	19	70	18	92	13	23	18	44	1.85
34143--34240	33	3.0	33	95	0	169	12	24	20	42	1.86
35717--35847	63	2.1	63	100	0	262	20	18	37	23	1.94
36421--36621	42	4.8	42	76	1	170	22	35	17	23	1.95
36555--36621	21	3.2	21	66	6	55	23	35	20	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36416--36591	84	2.1	84	93	0	307	21	36	16	25	1.94
36416--36621	84	2.5	84	88	1	270	22	35	17	24	1.95
37978--38013	14	2.6	14	95	0	63	30	0	25	44	1.54
38138--38194	14	3.7	14	75	20	60	43	22	24	8	1.81
38120--38209	33	2.7	33	94	0	153	43	21	22	13	1.87
38120--38180	19	3.5	19	74	21	69	44	21	22	11	1.84
38205--38355	19	8.7	19	63	21	71	15	21	20	42	1.89
38209--38335	33	3.9	32	85	8	184	14	22	19	43	1.88
38202--38334	66	2.0	66	95	0	239	16	21	19	42	1.89
40627--40651	12	2.1	12	100	0	50	0	28	0	72	0.86
40826--40879	24	2.2	24	90	0	81	40	20	16	22	1.91
41618--41668	20	2.5	20	96	0	93	29	19	29	21	1.98
41881--41970	20	4.6	20	95	1	164	33	25	24	16	1.96
41996--42060	19	3.7	19	84	13	86	13	20	18	47	1.82
42066--42104	20	2.0	20	94	0	69	12	10	30	46	1.75
42187--42224	15	2.6	15	83	4	51	47	21	0	31	1.51
44074--44139	20	3.3	20	80	0	60	40	24	18	16	1.90
44093--44149	20	2.9	20	78	2	62	38	21	22	17	1.93
44133--44190	14	3.4	19	71	24	65	46	18	18	15	1.84
44133--44211	32	2.4	33	93	2	133	46	21	18	12	1.82
44149--44206	14	3.9	14	77	16	62	48	22	17	12	1.80
44240--44297	14	3.9	14	79	16	71	10	17	24	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44223--44313	32	2.8	33	94	3	166	12	18	21	47	1.81
44298--44352	20	2.8	19	83	8	65	16	23	23	36	1.94
44828--44872	18	2.5	18	88	0	72	13	15	44	26	1.83
46192--46265	20	3.8	20	81	1	69	43	22	17	16	1.88
46497--46540	22	2.0	22	95	0	79	18	15	45	20	1.85
46708--46842	20	6.7	19	80	7	108	24	17	25	33	1.96
46708--46845	61	2.3	61	84	0	186	23	16	24	34	1.95
46708--46863	61	2.6	61	81	2	152	23	18	24	33	1.96
47766--47791	7	3.7	7	100	0	52	30	0	15	53	1.42
58237--58264	14	2.0	14	100	0	56	50	28	0	21	1.49
58838--58864	14	1.9	14	100	0	54	37	18	0	44	1.50
60176--60215	2	20.0	2	100	0	80	50	0	0	50	1.00
68877--68944	33	2.1	33	100	0	136	10	30	23	35	1.88
69172--69211	2	20.5	2	94	5	73	50	0	0	50	1.00

Tables:   1

The End!