Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008607.1 Hibiscus syriacus cultivar Beakdansim tig00111563_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 531970
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 2 of 2
Found at i:313764 original size:23 final size:23
Alignment explanation
Indices: 313731--313798 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
313721 ATTATTATAT
*
313731 GGCACTACGGTGTAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
313754 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
* * *
313777 GGCACTTCGGTACAATTATACG
1 GGCACTACGGTGCAATTCTACG
313799 AGCTGTGGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.26
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:319229 original size:2 final size:2
Alignment explanation
Indices: 319222--319255 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
319212 TAAATTAATT
319222 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
319256 AATCTATTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:320376 original size:29 final size:29
Alignment explanation
Indices: 320343--320398 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
320333 TCCCAACACA
*
320343 TAGGTCGCCATGCCCTCCGGGCGACCTTG
1 TAGGTCGCCATGCACTCCGGGCGACCTTG
320372 TAGGTCGCCATGCACTCCGGGCGACCT
1 TAGGTCGCCATGCACTCCGGGCGACCT
320399 ACCCTCGCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.12, C:0.38, G:0.30, T:0.20
Consensus pattern (29 bp):
TAGGTCGCCATGCACTCCGGGCGACCTTG
Found at i:320450 original size:23 final size:23
Alignment explanation
Indices: 320416--320475 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
320406 CTCGGCTTCC
320416 CTCGGATT-CCCTCGCATAGCTCG
1 CTCGG-TTGCCCTCGCATAGCTCG
320439 CTCGGTTGCCCTCGCATAGCTCG
1 CTCGGTTGCCCTCGCATAGCTCG
* * *
320462 TTCGGATGGCCTCG
1 CTCGGTTGCCCTCG
320476 GATGCTCTCG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 2 0.06
23 31 0.94
ACGTcount: A:0.10, C:0.37, G:0.27, T:0.27
Consensus pattern (23 bp):
CTCGGTTGCCCTCGCATAGCTCG
Found at i:320502 original size:14 final size:14
Alignment explanation
Indices: 320483--320510 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
320473 TCGGATGCTC
320483 TCGGATGGCCTCGG
1 TCGGATGGCCTCGG
320497 TCGGATGGCCTCGG
1 TCGGATGGCCTCGG
320511 ATGCCCAGCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.29, G:0.43, T:0.21
Consensus pattern (14 bp):
TCGGATGGCCTCGG
Found at i:320513 original size:10 final size:10
Alignment explanation
Indices: 320463--320496 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
320453 CATAGCTCGT
320463 TCGGATGGCC
1 TCGGATGGCC
320473 TCGGAT-GCTC
1 TCGGATGGC-C
320483 TCGGATGGCC
1 TCGGATGGCC
320493 TCGG
1 TCGG
320497 TCGGATGGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 2 0.09
10 18 0.82
11 2 0.09
ACGTcount: A:0.09, C:0.29, G:0.38, T:0.24
Consensus pattern (10 bp):
TCGGATGGCC
Found at i:320595 original size:29 final size:29
Alignment explanation
Indices: 320552--320609 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
320542 ACAATCTCTT
* *
320552 GTAGCTCGCCGGGAAGACATGGCGACCTA
1 GTAGCTCGCCCGGAAGACATGACGACCTA
* *
320581 GTAGGTCGCCCGGAAGGCATGACGACCTA
1 GTAGCTCGCCCGGAAGACATGACGACCTA
320610 CGGCCAACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.24, C:0.28, G:0.34, T:0.14
Consensus pattern (29 bp):
GTAGCTCGCCCGGAAGACATGACGACCTA
Found at i:324613 original size:12 final size:12
Alignment explanation
Indices: 324588--324657 Score: 79
Period size: 12 Copynumber: 5.8 Consensus size: 12
324578 CGAAGATAAT
* *
324588 CAGAAATCAAAA
1 CAGAATTCAGAA
324600 CAGAATTCAGAA
1 CAGAATTCAGAA
324612 CAG-ATATCAGAA
1 CAGAAT-TCAGAA
* *
324624 CAGAATCCAGAT
1 CAGAATTCAGAA
*
324636 CAGAAATCAGAA
1 CAGAATTCAGAA
324648 CAGAATTCAG
1 CAGAATTCAG
324658 GTCATTTATC
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
11 2 0.04
12 44 0.92
13 2 0.04
ACGTcount: A:0.51, C:0.19, G:0.16, T:0.14
Consensus pattern (12 bp):
CAGAATTCAGAA
Found at i:324657 original size:48 final size:47
Alignment explanation
Indices: 324585--324694 Score: 139
Period size: 48 Copynumber: 2.3 Consensus size: 47
324575 AAACGAAGAT
*
324585 AATCAGAAATCAAAACAGAATTCAGAACAGATATCAGAACAGAATCC
1 AATCAGAAATCAGAACAGAATTCAGAACAGATATCAGAACAGAATCC
** ** *
324632 AGATCAGAAATCAGAACAGAATTCAGGTCATTTATCAGAACAGAATTC
1 A-ATCAGAAATCAGAACAGAATTCAGAACAGATATCAGAACAGAATCC
*
324680 AAGTCGGAAATCAGA
1 AA-TCAGAAATCAGA
324695 TAAAATATTT
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
47 2 0.04
48 52 0.96
ACGTcount: A:0.48, C:0.17, G:0.16, T:0.18
Consensus pattern (47 bp):
AATCAGAAATCAGAACAGAATTCAGAACAGATATCAGAACAGAATCC
Found at i:324692 original size:24 final size:25
Alignment explanation
Indices: 324586--324694 Score: 109
Period size: 24 Copynumber: 4.5 Consensus size: 25
324576 AACGAAGATA
*
324586 ATCAGAAATCAAAACAGAATTC-AG
1 ATCAGAAATCAGAACAGAATTCAAG
* * *
324610 AACAGATATCAGAACAGAA-TCCAG
1 ATCAGAAATCAGAACAGAATTCAAG
324634 ATCAGAAATCAGAACAGAATTC-AG
1 ATCAGAAATCAGAACAGAATTCAAG
* ***
324658 GTCATTTATCAGAACAGAATTCAAG
1 ATCAGAAATCAGAACAGAATTCAAG
*
324683 -TCGGAAATCAGA
1 ATCAGAAATCAGA
324695 TAAAATATTT
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
23 2 0.03
24 63 0.91
25 4 0.06
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.18
Consensus pattern (25 bp):
ATCAGAAATCAGAACAGAATTCAAG
Found at i:329746 original size:12 final size:12
Alignment explanation
Indices: 329721--329790 Score: 79
Period size: 12 Copynumber: 5.8 Consensus size: 12
329711 CGAAGATAAT
* *
329721 CAGAAATCAAAA
1 CAGAATTCAGAA
329733 CAGAATTCAGAA
1 CAGAATTCAGAA
329745 CAG-ATATCAGAA
1 CAGAAT-TCAGAA
* *
329757 CAGAATCCAGAT
1 CAGAATTCAGAA
*
329769 CAGAAATCAGAA
1 CAGAATTCAGAA
329781 CAGAATTCAG
1 CAGAATTCAG
329791 GTCATTTATC
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
11 2 0.04
12 44 0.92
13 2 0.04
ACGTcount: A:0.51, C:0.19, G:0.16, T:0.14
Consensus pattern (12 bp):
CAGAATTCAGAA
Found at i:329790 original size:48 final size:47
Alignment explanation
Indices: 329718--329827 Score: 139
Period size: 48 Copynumber: 2.3 Consensus size: 47
329708 AAACGAAGAT
*
329718 AATCAGAAATCAAAACAGAATTCAGAACAGATATCAGAACAGAATCC
1 AATCAGAAATCAGAACAGAATTCAGAACAGATATCAGAACAGAATCC
** ** *
329765 AGATCAGAAATCAGAACAGAATTCAGGTCATTTATCAGAACAGAATTC
1 A-ATCAGAAATCAGAACAGAATTCAGAACAGATATCAGAACAGAATCC
*
329813 AAGTCGGAAATCAGA
1 AA-TCAGAAATCAGA
329828 TAAAATATTT
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
47 2 0.04
48 52 0.96
ACGTcount: A:0.48, C:0.17, G:0.16, T:0.18
Consensus pattern (47 bp):
AATCAGAAATCAGAACAGAATTCAGAACAGATATCAGAACAGAATCC
Found at i:329825 original size:24 final size:25
Alignment explanation
Indices: 329719--329827 Score: 109
Period size: 24 Copynumber: 4.5 Consensus size: 25
329709 AACGAAGATA
*
329719 ATCAGAAATCAAAACAGAATTC-AG
1 ATCAGAAATCAGAACAGAATTCAAG
* * *
329743 AACAGATATCAGAACAGAA-TCCAG
1 ATCAGAAATCAGAACAGAATTCAAG
329767 ATCAGAAATCAGAACAGAATTC-AG
1 ATCAGAAATCAGAACAGAATTCAAG
* ***
329791 GTCATTTATCAGAACAGAATTCAAG
1 ATCAGAAATCAGAACAGAATTCAAG
*
329816 -TCGGAAATCAGA
1 ATCAGAAATCAGA
329828 TAAAATATTT
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
23 2 0.03
24 63 0.91
25 4 0.06
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.18
Consensus pattern (25 bp):
ATCAGAAATCAGAACAGAATTCAAG
Found at i:334867 original size:12 final size:12
Alignment explanation
Indices: 334842--334911 Score: 79
Period size: 12 Copynumber: 5.8 Consensus size: 12
334832 CGAAGATAAT
* *
334842 CAGAAATCAAAA
1 CAGAATTCAGAA
334854 CAGAATTCAGAA
1 CAGAATTCAGAA
334866 CAG-ATATCAGAA
1 CAGAAT-TCAGAA
* *
334878 CAGAATCCAGAT
1 CAGAATTCAGAA
*
334890 CAGAAATCAGAA
1 CAGAATTCAGAA
334902 CAGAATTCAG
1 CAGAATTCAG
334912 GTCATTTATC
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
11 2 0.04
12 44 0.92
13 2 0.04
ACGTcount: A:0.51, C:0.19, G:0.16, T:0.14
Consensus pattern (12 bp):
CAGAATTCAGAA
Found at i:334911 original size:48 final size:47
Alignment explanation
Indices: 334839--334948 Score: 139
Period size: 48 Copynumber: 2.3 Consensus size: 47
334829 AAACGAAGAT
*
334839 AATCAGAAATCAAAACAGAATTCAGAACAGATATCAGAACAGAATCC
1 AATCAGAAATCAGAACAGAATTCAGAACAGATATCAGAACAGAATCC
** ** *
334886 AGATCAGAAATCAGAACAGAATTCAGGTCATTTATCAGAACAGAATTC
1 A-ATCAGAAATCAGAACAGAATTCAGAACAGATATCAGAACAGAATCC
*
334934 AAGTCGGAAATCAGA
1 AA-TCAGAAATCAGA
334949 TAAAATATTT
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
47 2 0.04
48 52 0.96
ACGTcount: A:0.48, C:0.17, G:0.16, T:0.18
Consensus pattern (47 bp):
AATCAGAAATCAGAACAGAATTCAGAACAGATATCAGAACAGAATCC
Found at i:334946 original size:24 final size:25
Alignment explanation
Indices: 334840--334948 Score: 109
Period size: 24 Copynumber: 4.5 Consensus size: 25
334830 AACGAAGATA
*
334840 ATCAGAAATCAAAACAGAATTC-AG
1 ATCAGAAATCAGAACAGAATTCAAG
* * *
334864 AACAGATATCAGAACAGAA-TCCAG
1 ATCAGAAATCAGAACAGAATTCAAG
334888 ATCAGAAATCAGAACAGAATTC-AG
1 ATCAGAAATCAGAACAGAATTCAAG
* ***
334912 GTCATTTATCAGAACAGAATTCAAG
1 ATCAGAAATCAGAACAGAATTCAAG
*
334937 -TCGGAAATCAGA
1 ATCAGAAATCAGA
334949 TAAAATATTT
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
23 2 0.03
24 63 0.91
25 4 0.06
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.18
Consensus pattern (25 bp):
ATCAGAAATCAGAACAGAATTCAAG
Found at i:341218 original size:3 final size:3
Alignment explanation
Indices: 341197--341230 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
341187 AAATCCGCCA
* *
341197 GGT GGT GGA GGT GGA GGT GGT GGT GGT GGT GGT G
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT G
341231 AGGATGAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.06, C:0.00, G:0.68, T:0.26
Consensus pattern (3 bp):
GGT
Found at i:342595 original size:3 final size:3
Alignment explanation
Indices: 342589--342613 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
342579 TGATCAGATG
342589 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
342614 TTTTTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:342976 original size:15 final size:15
Alignment explanation
Indices: 342956--343073 Score: 121
Period size: 15 Copynumber: 7.5 Consensus size: 15
342946 TAATAAGGTT
342956 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
342971 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
342986 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
*
343001 ATTTACTTTAAAATA
1 ATTTATTTTAAAATA
* *
343016 AATTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
*
343035 TTGATTTATTTTTAAATA
1 ---ATTTATTTTAAAATA
343053 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
343067 ATTTATT
1 ATTTATT
343074 AGTATGAATT
Statistics
Matches: 87, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
14 12 0.14
15 56 0.64
16 4 0.05
17 2 0.02
18 1 0.01
19 1 0.01
20 2 0.02
21 3 0.03
22 6 0.07
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.52
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:343052 original size:37 final size:36
Alignment explanation
Indices: 343001--343128 Score: 113
Period size: 36 Copynumber: 3.6 Consensus size: 36
342991 TTATAAAATA
* *
343001 ATTTACTTTAAAATAAATTATTATAAAATATGGATTG
1 ATTTA-TTTTAAATAATTTATTATAAAATATGGATTG
* *
343038 ATTTATTTTTAAATAATTTATT-TTAAATA---ATTT
1 ATTTA-TTTTAAATAATTTATTATAAAATATGGATTG
* * * * *
343071 A-TTAGTATGAATTTATTTATTTTAAAATATGGATTG
1 ATTTA-TTTTAAATAATTTATTATAAAATATGGATTG
343107 ATTTATTTTAAATAATTTATTA
1 ATTTATTTTAAATAATTTATTA
343129 GTATGAATTG
Statistics
Matches: 69, Mismatches: 17, Indels: 11
0.71 0.18 0.11
Matches are distributed among these distances:
32 15 0.22
33 10 0.14
36 22 0.32
37 22 0.32
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.52
Consensus pattern (36 bp):
ATTTATTTTAAATAATTTATTATAAAATATGGATTG
Found at i:343063 original size:14 final size:14
Alignment explanation
Indices: 343038--343073 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
343028 ATATGGATTG
343038 ATTTATTTTTAAATA
1 ATTTA-TTTTAAATA
343053 ATTTATTTTAAATA
1 ATTTATTTTAAATA
343067 ATTTATT
1 ATTTATT
343074 AGTATGAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:343093 original size:32 final size:31
Alignment explanation
Indices: 343053--343666 Score: 191
Period size: 32 Copynumber: 20.4 Consensus size: 31
343043 TTTTTAAATA
*
343053 ATTTATTTTAAATAATTTATTAGTATGAATTT
1 ATTTATTTTAAATAATTTATTAGTATG-ATTG
343085 ATTTATTTT-AA-AA--TA-T-G---GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
343107 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATG-ATTG
343139 ATTTATTTT-AA-AA--TA-T-G---GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
343161 ATTTATTTTAAATAATTTATTAGTATGTATTG
1 ATTTATTTTAAATAATTTATTAGTATG-ATTG
* * *
343193 ATTTAGTTTAAAATATAGATTGATT--TATTATTG
1 ATTTA-TTT-TAA-ATA-ATTTATTAGTATGATTG
* * * ** * * * * *
343226 TAGTTGTATGGATTGATTTATTTTA-AATAATTT
1 -ATTTATTTTAAATAATTTA--TTAGTATGATTG
* * * * *
343259 ATTAGTATGTATTGATTTATTT-TAAAATATAGATTG
1 ATT--TAT-T-TTAAATAATTTAT-TAGTAT-GATTG
343295 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATG-ATTG
343327 ATTTATTTT-AA-AA--TA-T-G---GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
343349 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
* *
343381 ATTTATTTTATATAATTTATTTGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
* *
343413 ATTTATTTTAAAATATGGATTGATT--TATTATTG
1 ATTTATTTT-AAATA---ATTTATTAGTATGATTG
* * * ** * * * * *
343446 TAGTTGTATGGATTGATTTATTTTA-AATAATTT
1 -ATTTATTTTAAATAATTTA--TTAGTATGATTG
* * * * *
343479 ATTAGTATTGATTGATTTATTT-TAAAATATGGATTG
1 ATT--TATT--TTAAATAATTTAT-TAGTAT-GATTG
343515 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATG-ATTG
343547 ATTTATTTT-AA-AA--TA-T-G-A--ATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
343569 ATTTATTTTAAA-A---TA-T-G---GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
343591 ATTTATTTTAAATAATTTATTAGTATAGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
*
343623 ATTTATTTTAAATAATTTATTTGTATAGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
343655 ATTTATTTTAAA
1 ATTTATTTTAAA
343667 ATATGAATTG
Statistics
Matches: 446, Mismatches: 60, Indels: 152
0.68 0.09 0.23
Matches are distributed among these distances:
22 71 0.16
23 13 0.03
24 6 0.01
25 1 0.00
26 12 0.03
27 8 0.02
28 12 0.03
30 16 0.04
31 13 0.03
32 182 0.41
33 34 0.08
34 29 0.07
35 7 0.02
36 42 0.09
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (31 bp):
ATTTATTTTAAATAATTTATTAGTATGATTG
Found at i:343108 original size:69 final size:67
Alignment explanation
Indices: 342971--343128 Score: 205
Period size: 69 Copynumber: 2.3 Consensus size: 67
342961 TTTTAAAATA
*
342971 ATTTATTTTAAAATAATTTATTATAAAATAATTTACTTTAAAATAAATTATTATAAAATATGGAT
1 ATTTATTTTTAAATAATTTATTATAAAATAATTTACTTTAAAATAAATTATTATAAAATATGGAT
343036 TG
66 TG
* * * * *
343038 ATTTATTTTTAAATAATTTATT-TTAAATAATTTA-TTAGTATGAATTTATTTATTTTAAAATAT
1 ATTTATTTTTAAATAATTTATTATAAAATAATTTACTT--TA--AAATAAATTATTATAAAATAT
343101 GGATTG
62 GGATTG
343107 ATTTA-TTTTAAATAATTTATTA
1 ATTTATTTTTAAATAATTTATTA
343129 GTATGAATTG
Statistics
Matches: 80, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
65 2 0.03
66 11 0.14
67 23 0.29
68 16 0.20
69 28 0.35
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (67 bp):
ATTTATTTTTAAATAATTTATTATAAAATAATTTACTTTAAAATAAATTATTATAAAATATGGAT
TG
Found at i:343118 original size:54 final size:54
Alignment explanation
Indices: 343053--343763 Score: 331
Period size: 54 Copynumber: 13.1 Consensus size: 54
343043 TTTTTAAATA
*
343053 ATTTATTTTAAATAATTTATTAGTATGAATTTATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
343107 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
* * *
343161 ATTTATTTTAAATAATTTATTAGTATGTATTGATTTAGTTTAAAATATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
* * **
343215 ATTTA--TT--AT--TGTAGTT-GTATGGATTGATTTATTTT-AAATAATTTATTAG
1 ATTTATTTTAAATAATTTA-TTAGTATGAATTGATTTATTTTAAAAT-ATGGATT-G
* * ** * * *
343264 TATGTA-TTGATTTATTTTA-AAATAT-AGATTGATTTATTTTAAATAATTTATTAGTATGAATT
1 -ATTTATTTTAAATAATTTATTAGTATGA-ATTGATTTATTTT-AA-AA--TA-T-G---G-ATT
343326 G
54 G
** * * * ** * * *
343327 ATTTATTTTAAA-ATATGGATT-G-ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATA-ATTTATTAGTA-TGAATTGATTTATTTTA-AAATATGGATTG
* * *
343381 ATTTATTTTATATAATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
* * **
343435 ATTTA--TT--AT--TGTAGTT-GTATGGATTGATTTATTTT-AAATAATTTATTAG
1 ATTTATTTTAAATAATTTA-TTAGTATGAATTGATTTATTTTAAAAT-ATGGATT-G
* * ** * * * * *
343484 TATTGA-TTGATTTATTTTA-AAATATGGATTGATTTATTTT-AAATA---ATTT
1 -ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
* * * * *
343533 A-TTAGTATGAATTGATTTATTTTAAAATATGAATTGATTTATTTTAAAATATGGATTG
1 ATTTA-TTTTAAATAATTTA--TT--AGTATGAATTGATTTATTTTAAAATATGGATTG
*
343591 ATTTATTTTAAATAATTTATTAGTAT-AGATTGATTTATTTT-AAATA---ATTT
1 ATTTATTTTAAATAATTTATTAGTATGA-ATTGATTTATTTTAAAATATGGATTG
* * * * * *** *
343641 ATTT-GTATAGATTGATTTATTTTAAAATATGAATTGATTTATTATTGTAGTTGTATGGATTA
1 ATTTATTTTA-AATAATTTA--TT--AGTATGAATTGATTTA-T-TT-TA-AAATATGGATTG
*
343703 ATTTATTTTAAATAATTTATTAGTATAAATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
343757 ATTTATT
1 ATTTATT
343764 ATTGTAGTTG
Statistics
Matches: 499, Mismatches: 89, Indels: 138
0.69 0.12 0.19
Matches are distributed among these distances:
47 10 0.02
48 53 0.11
49 18 0.04
50 29 0.06
51 2 0.00
52 6 0.01
53 9 0.02
54 246 0.49
55 28 0.06
56 8 0.02
57 4 0.01
58 30 0.06
59 8 0.02
60 4 0.01
62 22 0.04
63 18 0.04
64 4 0.01
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (54 bp):
ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTG
Found at i:343155 original size:22 final size:22
Alignment explanation
Indices: 343130--343172 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
343120 AATTTATTAG
343130 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
*
343152 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
343173 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:343246 original size:80 final size:80
Alignment explanation
Indices: 343152--343301 Score: 291
Period size: 80 Copynumber: 1.9 Consensus size: 80
343142 TATTTTAAAA
343152 TATGGATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTAGTTTAAAATATAGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTAGTTTAAAATATAGATTGAT
343217 TTATTATTGTAGTTG
66 TTATTATTGTAGTTG
*
343232 TATGGATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTATTTTAAAATATAGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTAGTTTAAAATATAGATTGAT
343297 TTATT
66 TTATT
343302 TTAAATAATT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 69 1.00
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (80 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTAGTTTAAAATATAGATTGAT
TTATTATTGTAGTTG
Found at i:343343 original size:22 final size:22
Alignment explanation
Indices: 343318--343360 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
343308 AATTTATTAG
343318 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
*
343340 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
343361 TAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:343386 original size:18 final size:18
Alignment explanation
Indices: 343363--343442 Score: 60
Period size: 18 Copynumber: 4.4 Consensus size: 18
343353 ATTTTAAATA
343363 ATTTATTAGTATGGATTG
1 ATTTATTAGTATGGATTG
* *
343381 ATTTATT-TTAT--A-TA
1 ATTTATTAGTATGGATTG
*
343395 ATTTATTTGTATGGATTG
1 ATTTATTAGTATGGATTG
*
343413 ATTTATTTTAAAATATGGATTG
1 ATTTA--TT--AGTATGGATTG
343435 ATTTATTA
1 ATTTATTA
343443 TTGTAGTTGT
Statistics
Matches: 48, Mismatches: 6, Indels: 16
0.69 0.09 0.23
Matches are distributed among these distances:
14 8 0.17
15 4 0.08
17 4 0.08
18 14 0.29
20 4 0.08
22 14 0.29
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (18 bp):
ATTTATTAGTATGGATTG
Found at i:343463 original size:188 final size:185
Alignment explanation
Indices: 343070--343472 Score: 546
Period size: 188 Copynumber: 2.1 Consensus size: 185
343060 TTAAATAATT
* *
343070 TATTAGTATGAATTTATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGA
1 TATTAGTATGAATTGATTTATTTTAAAATATAGATTGATTTATTTTAAATAATTTATTAGTATGA
*
343135 ATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTAGT
66 ATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTAGT
* * *** *
343200 TTAAAATATAGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATT
131 TTAAAATATAGATGGATTGATTATTGTAGAAATATGGATTGATTTA-TTT-AAT-ATG
*
343258 TATTAGTATGTATTGATTTATTTTAAAATATAGATTGATTTATTTTAAATAATTTATTAGTATGA
1 TATTAGTATGAATTGATTTATTTTAAAATATAGATTGATTTATTTTAAATAATTTATTAGTATGA
*
343323 ATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATT
66 ATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTAGT
* *
343388 TTATATAATTTATTTGTATGGATTGATTTATTTTA-AAATATGGATTGATTTA-TT-AT-TG
131 TTA-A-AA--TA-TAG-ATGGATTGA-TTATTGTAGAAATATGGATTGATTTATTTAATATG
*
343446 TAGTT-GTATGGATTGATTTATTTTAAA
1 TA-TTAGTATGAATTGATTTATTTTAAA
343473 TAATTTATTA
Statistics
Matches: 193, Mismatches: 14, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
188 152 0.79
189 3 0.02
190 4 0.02
192 4 0.02
193 2 0.01
194 21 0.11
195 7 0.04
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (185 bp):
TATTAGTATGAATTGATTTATTTTAAAATATAGATTGATTTATTTTAAATAATTTATTAGTATGA
ATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTAGT
TTAAAATATAGATGGATTGATTATTGTAGAAATATGGATTGATTTATTTAATATG
Found at i:343493 original size:80 final size:82
Alignment explanation
Indices: 343290--343843 Score: 689
Period size: 80 Copynumber: 6.8 Consensus size: 82
343280 TTAAAATATA
343290 GATTGATTTATTTTAAATAATTTATTAGTAT-GAATTGATTTATTTTAAAATATGGATTGATTTA
1 GATTGATTTATTTTAAATAATTTATTAGTATAG-ATTGATTTATTTTAAAATATGGATTGATTTA
*
343354 TTTTAAATAATTTATTAGTATG
65 --TT-AAT-ATGTATTAGTATG
* * *
343376 GATTGATTTATTTTATATAATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTAT
343441 T-AT-TGTAGTT-GTATG
66 TAATATGTA-TTAGTATG
*
343456 GATTGATTTATTTTAAATAATTTATTAGTATTGATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTA-
*
343521 TTTAAATAATTTATTAGTATG
65 -TT-AAT-ATGTATTAGTATG
*
343542 AATTGATTTATTTT-AA-AA--TA-T-G---A-ATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTA-
* *
343597 TTTAAATAATTTATTAGTATA
65 -TT-AAT-ATGTATTAGTATG
* *
343618 GATTGATTTATTTTAAATAATTTATTTGTATAGATTGATTTATTTTAAAATATGAATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTAT
343683 T-AT-TGTAGTT-GTATG
66 TAATATGTA-TTAGTATG
* *
343698 GATTAATTTATTTTAAATAATTTATTAGTATAAATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTAT
343763 T-AT-TGTAGTT-GTATG
66 TAATATGTA-TTAGTATG
* *
343778 GATTTATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTAT
343843 T
66 T
343844 TTAAATAATT
Statistics
Matches: 427, Mismatches: 21, Indels: 46
0.86 0.04 0.09
Matches are distributed among these distances:
76 65 0.15
77 2 0.00
78 2 0.00
80 218 0.51
81 6 0.01
82 9 0.02
84 8 0.02
85 5 0.01
86 111 0.26
87 1 0.00
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.53
Consensus pattern (82 bp):
GATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTAT
TAATATGTATTAGTATG
Found at i:343517 original size:242 final size:239
Alignment explanation
Indices: 343018--343858 Score: 965
Period size: 242 Copynumber: 3.5 Consensus size: 239
343008 TTAAAATAAA
* *
343018 TTATTATAAAATATGGATTGATTTATTTT--TA-AA-TAATTTATTTTAAATAATTTATTAGTAT
1 TTATTTTAAAATATGGATTGATTTATTTTAATATAATTTATTTATTTTAAATAATTTATTAGTAT
* *
343079 GAATTTATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATTTA
66 GAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA
** *
343144 -TTT-TA-AA---A----TATGGATTGATTTATTTT-AAATAATTTATTAGTATGTATTGATT-T
131 TTTTATATAATTTATTTGTATGGATTGATTTATTTTAAAAT-ATGAATT-G-ATTTATT-ATTGT
** * * *
343197 AGTT-TA-AAATATAGATTGA-TTT--ATTATTGTAGTT-GTATGGATTGAT
192 AGTTGTATGGAT-T-GATTTATTTTAAATAATT-TA-TTAGTATAGATTGAT
*
343243 TTATTTTAAATAATTTATTAGTATGTATTGATTTATTTTAAAATATAGATTGATTTATTTTAAAT
1 TTATTTT-AA-AA--TA-T-G---G-ATTGATTTATTTT--AATATA-ATTTATTTATTTTAAAT
343308 AATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGT
53 AATTTATTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGT
*
343373 ATGGATTGATTTATTTTATATAATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGATT
118 ATGGATTGATTTATTTTATATAATTTATTTGTATGGATTGATTTATTTTAAAATATGAATTGATT
*
343438 TATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATTGATTGAT
183 TATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
* * * *
343495 TTATTTTAAAATATGGATTGATTTATTTTAA-ATAATTTA-TTAGTATGAATTGATTTATTTTAA
1 TTATTTTAAAATATGGATTGATTTATTTTAATATAATTTATTTA-TTTTAAATAATTTA--TT--
* *
343558 AATATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTG
61 AGTATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTG
* *
343623 ATTTATTTTAAATAATTTATTTGTATAGATTGATTTATTTTAAAATATGAATTGATTTATTATTG
126 ATTTATTTTATATAATTTATTTGTATGGATTGATTTATTTTAAAATATGAATTGATTTATTATTG
* *
343688 TAGTTGTATGGATTAATTTATTTTAAATAATTTATTAGTATAAATTGAT
191 TAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
* *
343737 TTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTTATTTATTTTAAATAATTTA
1 TTATTTTAAAATATGGATTGATTTA-T-TT-TA---ATAT-AATTTATTTATTTTAAATAATTTA
*
343802 TTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTA
59 TTAGTATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTA
343859 TTGTTGTTGT
Statistics
Matches: 534, Mismatches: 33, Indels: 77
0.83 0.05 0.12
Matches are distributed among these distances:
225 6 0.01
226 2 0.00
227 2 0.00
229 2 0.00
230 1 0.00
231 1 0.00
234 1 0.00
235 13 0.02
237 3 0.01
238 14 0.03
239 5 0.01
240 5 0.01
241 1 0.00
242 299 0.56
243 5 0.01
244 4 0.01
245 4 0.01
246 54 0.10
247 1 0.00
248 5 0.01
249 5 0.01
250 33 0.06
251 14 0.03
252 45 0.08
253 9 0.02
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (239 bp):
TTATTTTAAAATATGGATTGATTTATTTTAATATAATTTATTTATTTTAAATAATTTATTAGTAT
GAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA
TTTTATATAATTTATTTGTATGGATTGATTTATTTTAAAATATGAATTGATTTATTATTGTAGTT
GTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
Found at i:343563 original size:22 final size:22
Alignment explanation
Indices: 343538--343602 Score: 121
Period size: 22 Copynumber: 3.0 Consensus size: 22
343528 AATTTATTAG
343538 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
343560 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
*
343582 TATGGATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
343603 TAATTTATTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:343628 original size:18 final size:17
Alignment explanation
Indices: 343605--343661 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 17
343595 ATTTTAAATA
343605 ATTTATTAGTATAGATTG
1 ATTTATT-GTATAGATTG
* *
343623 ATTTATT-T-TA-AATA
1 ATTTATTGTATAGATTG
343637 ATTTATTTGTATAGATTG
1 ATTTA-TTGTATAGATTG
343655 ATTTATT
1 ATTTATT
343662 TTAAAATATG
Statistics
Matches: 31, Mismatches: 4, Indels: 9
0.70 0.09 0.20
Matches are distributed among these distances:
14 7 0.23
15 4 0.13
16 2 0.06
17 4 0.13
18 14 0.45
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (17 bp):
ATTTATTGTATAGATTG
Found at i:343656 original size:220 final size:213
Alignment explanation
Indices: 343130--343661 Score: 776
Period size: 220 Copynumber: 2.4 Consensus size: 213
343120 AATTTATTAG
343130 TATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGTATTGAT
1 TATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATG-ATTGAT
*
343195 TTAGTTT-AAA-A--TATAGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAA
65 TTATTTTAAAATATGTATAGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAA
343256 TTTATTAGTATGTATTGATTTATTTTAAAATATAGATTGATTTATTTTAAATAATTTATTAGTAT
130 TTTATTAGTATGTATTGATTTATTTTAAAATATAGATTGATTTATTTTAAATAATTTATTAGTAT
343321 GAATTGATTTATTTTAAAA
195 GAATTGATTTATTTTAAAA
* * *
343340 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTATATAATTTATTTGT
1 TATGAATTGATTTA-TTT---TAA---A--A-TATGGATTGATTTATTTTAAATAATTTATTAGT
343405 ATGGATTGATTTATTTTAAAATATG----GATTGATTTATTATTGTAGTTGTATGGATTGATTTA
56 AT-GATTGATTTATTTTAAAATATGTATAGATTGATTTATTATTGTAGTTGTATGGATTGATTTA
*
343466 TTTTAAATAATTTATTAGTAT-TGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAA
120 TTTTAAATAATTTATTAGTATGT-ATTGATTTATTTTAAAATATAGATTGATTTATTTTAAATAA
343530 TTTATTAGTATGAATTGATTTATTTTAAAA
184 TTTATTAGTATGAATTGATTTATTTTAAAA
343560 TATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
1 TATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTAT-GATTGAT
343625 TTATTTTAAATAATTTATTTGTATAGATTGATTTATT
65 TTATTTT-AA-AA--TA--TGTATAGATTGATTTATT
343662 TTAAAATATG
Statistics
Matches: 287, Mismatches: 9, Indels: 42
0.85 0.03 0.12
Matches are distributed among these distances:
210 60 0.21
211 6 0.02
212 2 0.01
213 1 0.00
214 5 0.02
216 5 0.02
217 1 0.00
219 5 0.02
220 197 0.69
221 4 0.01
222 1 0.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (213 bp):
TATGAATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTAGTATGATTGATT
TATTTTAAAATATGTATAGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAAT
TTATTAGTATGTATTGATTTATTTTAAAATATAGATTGATTTATTTTAAATAATTTATTAGTATG
AATTGATTTATTTTAAAA
Found at i:343662 original size:18 final size:16
Alignment explanation
Indices: 343586--343665 Score: 69
Period size: 14 Copynumber: 5.0 Consensus size: 16
343576 TTAAAATATG
343586 GATTGATTTATTTTAA
1 GATTGATTTATTTTAA
* *
343602 -A-TAATTTATTAGTATA
1 GATTGATTTATT-TTA-A
343618 GATTGATTTATTTTAA
1 GATTGATTTATTTTAA
*
343634 -A-TAATTTATTTGTATA
1 GATTGATTTATTT-TA-A
343650 GATTGATTTATTTTAA
1 GATTGATTTATTTTAA
343666 AATATGAATT
Statistics
Matches: 50, Mismatches: 6, Indels: 16
0.69 0.08 0.22
Matches are distributed among these distances:
14 17 0.34
15 6 0.12
16 4 0.08
17 6 0.12
18 17 0.34
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (16 bp):
GATTGATTTATTTTAA
Found at i:343720 original size:14 final size:15
Alignment explanation
Indices: 343699--343746 Score: 53
Period size: 14 Copynumber: 3.1 Consensus size: 15
343689 AGTTGTATGG
343699 ATTAATTTATTTTAA
1 ATTAATTTATTTTAA
343714 A-TAATTTATTAGTATAA
1 ATTAATTTATT--T-TAA
*
343731 ATTGATTTATTTTAA
1 ATTAATTTATTTTAA
343746 A
1 A
343747 ATATGGATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
14 9 0.32
15 5 0.18
16 2 0.07
17 4 0.14
18 8 0.29
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (15 bp):
ATTAATTTATTTTAA
Found at i:343831 original size:22 final size:22
Alignment explanation
Indices: 343806--343848 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
343796 AATTTATTAG
343806 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
343828 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
343849 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:343908 original size:31 final size:31
Alignment explanation
Indices: 343873--343931 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
343863 TGTTGTATGG
* *
343873 ATTATTTAAATTTCAATATTGTAAAACTAAA
1 ATTATTTAAATCTCAATATTGCAAAACTAAA
*
343904 ATTATTTAAATCTCAGTATTGCAAAACT
1 ATTATTTAAATCTCAATATTGCAAAACT
343932 CTTTTAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATCTCAATATTGCAAAACTAAA
Found at i:344998 original size:30 final size:33
Alignment explanation
Indices: 344959--345019 Score: 83
Period size: 30 Copynumber: 1.9 Consensus size: 33
344949 AGTACTGAAA
344959 AGAAGATTAAATTAATGAAA-TA-TTTAAATAT
1 AGAAGATTAAATTAATGAAATTATTTTAAATAT
* *
344990 AGAA-ATTAAATTTATTAAATTATTTTAAAT
1 AGAAGATTAAATTAATGAAATTATTTTAAAT
345020 TATAACTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 13 0.50
31 6 0.23
32 7 0.27
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (33 bp):
AGAAGATTAAATTAATGAAATTATTTTAAATAT
Found at i:345370 original size:20 final size:19
Alignment explanation
Indices: 345345--345392 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
345335 TATAACATCC
*
345345 AATATTAATATTATTTTGTA
1 AATATTAATATT-TTATGTA
345365 AATATTTAATATTTTATGTA
1 AATA-TTAATATTTTATGTA
345385 ACATATTA
1 A-ATATTA
345393 TTAAAAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (19 bp):
AATATTAATATTTTATGTA
Found at i:345375 original size:21 final size:20
Alignment explanation
Indices: 345345--345391 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
345335 TATAACATCC
*
345345 AATA-TTAATATTATTTTGTA
1 AATATTTAATATT-TTATGTA
345365 AATATTTAATATTTTATGTA
1 AATATTTAATATTTTATGTA
345385 ACATATT
1 A-ATATT
345392 ATTAAAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (20 bp):
AATATTTAATATTTTATGTA
Found at i:345687 original size:15 final size:15
Alignment explanation
Indices: 345667--345719 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
345657 AGGTACCTTC
345667 TTCTTTCTTCTATTT
1 TTCTTTCTTCTATTT
* * *
345682 TTCTTTGC-AC-CTTC
1 TTCTTT-CTTCTATTT
345696 TTCTTTCTTCTATTT
1 TTCTTTCTTCTATTT
345711 TTCTTTCTT
1 TTCTTTCTT
345720 GTTTAATCCT
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
13 1 0.03
14 9 0.31
15 18 0.62
16 1 0.03
ACGTcount: A:0.06, C:0.25, G:0.02, T:0.68
Consensus pattern (15 bp):
TTCTTTCTTCTATTT
Found at i:345696 original size:29 final size:29
Alignment explanation
Indices: 345661--345716 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
345651 TCTTCCAGGT
345661 ACCTTCTTCTTTCTTCTATTTTTCTTTGC
1 ACCTTCTTCTTTCTTCTATTTTTCTTTGC
345690 ACCTTCTTCTTTCTTCTATTTTTCTTT
1 ACCTTCTTCTTTCTTCTATTTTTCTTT
345717 CTTGTTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.07, C:0.27, G:0.02, T:0.64
Consensus pattern (29 bp):
ACCTTCTTCTTTCTTCTATTTTTCTTTGC
Found at i:362117 original size:9 final size:9
Alignment explanation
Indices: 362105--362138 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
362095 TAATATTTTG
362105 TATTTAATT
1 TATTTAATT
362114 TATTTAA-T
1 TATTTAATT
362122 TATTTAATT
1 TATTTAATT
362131 TATTTAAT
1 TATTTAAT
362139 ATTTTACTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
TATTTAATT
Found at i:362144 original size:17 final size:17
Alignment explanation
Indices: 362105--362142 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
362095 TAATATTTTG
362105 TATTTAATTTATTTAAT
1 TATTTAATTTATTTAAT
362122 TATTTAATTTATTTAA-
1 TATTTAATTTATTTAAT
362138 TATTT
1 TATTT
362143 TACTTAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TATTTAATTTATTTAAT
Found at i:362149 original size:21 final size:21
Alignment explanation
Indices: 362078--362156 Score: 64
Period size: 21 Copynumber: 4.0 Consensus size: 21
362068 TCTCTACGAT
362078 ATATTTTA-TT-ATATT-TTTA
1 ATATTTTATTTAAT-TTATTTA
362097 ATATTTTGTATTTAATTTATTT-
1 ATA-TTT-TATTTAATTTATTTA
362119 A-A--TTATTTAATTTATTTA
1 ATATTTTATTTAATTTATTTA
* *
362137 ATATTTTACTTAATTAATTT
1 ATATTTTATTTAATTTATTT
362157 TTTTACAGAT
Statistics
Matches: 49, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
17 14 0.29
18 2 0.04
19 4 0.08
20 3 0.06
21 16 0.33
22 5 0.10
23 5 0.10
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (21 bp):
ATATTTTATTTAATTTATTTA
Found at i:364337 original size:13 final size:12
Alignment explanation
Indices: 364314--364358 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
364304 TTGTATTTAA
364314 TACTTTTTATTG
1 TACTTTTTATTG
*
364326 TAGTTGTTTATTG
1 TACTT-TTTATTG
*
364339 GACTTTTTATTG
1 TACTTTTTATTG
*
364351 TAATTTTT
1 TACTTTTT
364359 TTATTATTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
12 17 0.63
13 10 0.37
ACGTcount: A:0.18, C:0.04, G:0.13, T:0.64
Consensus pattern (12 bp):
TACTTTTTATTG
Found at i:376920 original size:6 final size:6
Alignment explanation
Indices: 376911--376972 Score: 61
Period size: 6 Copynumber: 10.3 Consensus size: 6
376901 GAACATAAGC
* * * * *
376911 ATATAT ATATGT ACATAT ATGTAT ATATAT ATATAT ATGTAT ATGTAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
* *
376959 ATGTAT ATGTAT AT
1 ATATAT ATATAT AT
376973 TTATGCAGAA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 49 1.00
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (6 bp):
ATATAT
Found at i:376930 original size:12 final size:12
Alignment explanation
Indices: 376911--376972 Score: 74
Period size: 12 Copynumber: 5.3 Consensus size: 12
376901 GAACATAAGC
376911 ATATATATATG-
1 ATATATATATGT
*
376922 -TACATATATGT
1 ATATATATATGT
*
376933 ATATATATATAT
1 ATATATATATGT
*
376945 ATATGTATATGT
1 ATATATATATGT
*
376957 ATATGTATATGT
1 ATATATATATGT
376969 ATAT
1 ATAT
376973 TTATGCAGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
10 9 0.20
12 35 0.80
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (12 bp):
ATATATATATGT
Found at i:376959 original size:18 final size:18
Alignment explanation
Indices: 376914--376972 Score: 82
Period size: 18 Copynumber: 3.3 Consensus size: 18
376904 CATAAGCATA
* *
376914 TATATATGTACATATATG
1 TATATATATATATATATG
376932 TATATATATATATATATG
1 TATATATATATATATATG
* *
376950 TATATGTATATGTATATG
1 TATATATATATATATATG
376968 TATAT
1 TATAT
376973 TTATGCAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.39, C:0.02, G:0.10, T:0.49
Consensus pattern (18 bp):
TATATATATATATATATG
Found at i:377007 original size:19 final size:19
Alignment explanation
Indices: 376983--377045 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 19
376973 TTATGCAGAA
376983 TTGTATAGACGCGAAATGG
1 TTGTATAGACGCGAAATGG
* *
377002 TTGTATATTTATGC-AGAA---
1 TTGTATA--GACGCGA-AATGG
377020 TTGTATAGACGCGAAATGG
1 TTGTATAGACGCGAAATGG
377039 TTGTATA
1 TTGTATA
377046 TTTATTTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 14
0.65 0.08 0.27
Matches are distributed among these distances:
16 5 0.15
17 1 0.03
18 7 0.21
19 14 0.42
20 1 0.03
21 5 0.15
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.35
Consensus pattern (19 bp):
TTGTATAGACGCGAAATGG
Found at i:377008 original size:37 final size:37
Alignment explanation
Indices: 376966--377050 Score: 170
Period size: 37 Copynumber: 2.3 Consensus size: 37
376956 TATATGTATA
376966 TGTATATTTATGCAGAATTGTATAGACGCGAAATGGT
1 TGTATATTTATGCAGAATTGTATAGACGCGAAATGGT
377003 TGTATATTTATGCAGAATTGTATAGACGCGAAATGGT
1 TGTATATTTATGCAGAATTGTATAGACGCGAAATGGT
377040 TGTATATTTAT
1 TGTATATTTAT
377051 TTTTAATGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.39
Consensus pattern (37 bp):
TGTATATTTATGCAGAATTGTATAGACGCGAAATGGT
Found at i:378067 original size:23 final size:23
Alignment explanation
Indices: 378037--378089 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
378027 TTGTGACATG
*
378037 TTCTCTGTCTTTATGATAC-TTT
1 TTCTCTGTCTTTATGACACATTT
*
378059 TATCTCTGTTTTTATGACACATTT
1 T-TCTCTGTCTTTATGACACATTT
378083 TTCTCTG
1 TTCTCTG
378090 CATTTTGGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 1 0.04
23 22 0.81
24 4 0.15
ACGTcount: A:0.15, C:0.19, G:0.09, T:0.57
Consensus pattern (23 bp):
TTCTCTGTCTTTATGACACATTT
Found at i:386173 original size:47 final size:47
Alignment explanation
Indices: 386104--386200 Score: 185
Period size: 47 Copynumber: 2.1 Consensus size: 47
386094 TATTTTCCTC
*
386104 ATTCAATTTTCAATTTGATCAACTTGTTCACTGAACTTTACAATTGA
1 ATTCAATTTTCAATTTGATCAACTTGTTCACTAAACTTTACAATTGA
386151 ATTCAATTTTCAATTTGATCAACTTGTTCACTAAACTTTACAATTGA
1 ATTCAATTTTCAATTTGATCAACTTGTTCACTAAACTTTACAATTGA
386198 ATT
1 ATT
386201 ATTTTGCTCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.33, C:0.16, G:0.07, T:0.43
Consensus pattern (47 bp):
ATTCAATTTTCAATTTGATCAACTTGTTCACTAAACTTTACAATTGA
Found at i:386632 original size:2 final size:2
Alignment explanation
Indices: 386625--386684 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
386615 AAAGTAATTG
386625 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
386667 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
386685 GACTATTTTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:387037 original size:41 final size:41
Alignment explanation
Indices: 386976--387054 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
386966 ATTTCGTCTT
*
386976 CACACTTTTATAGTACTTACATATATATATTAGTATTACTC
1 CACACTTTTATAATACTTACATATATATATTAGTATTACTC
*
387017 CACACTTTTATAATATTTACATATATATATTAGTATTA
1 CACACTTTTATAATACTTACATATATATATTAGTATTA
387055 ATTTTATTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.37, C:0.14, G:0.04, T:0.46
Consensus pattern (41 bp):
CACACTTTTATAATACTTACATATATATATTAGTATTACTC
Found at i:388068 original size:31 final size:29
Alignment explanation
Indices: 388024--388135 Score: 73
Period size: 30 Copynumber: 3.6 Consensus size: 29
388014 TAAAAGGGGT
*
388024 AAACTTCATTTTGGCTCCCTCTGTTTTGAA
1 AAACTTCAATTTGG-TCCCTCTGTTTTGAA
* * **
388054 AAACATTCAATTTGGTCCC-CAAATCGGTTGGGT
1 AAAC-TTCAATTTGGTCCCTC---T-GTTTTGAA
* *
388087 AAACTTCATTTTGGCTCCCTCTGTTTTAAA
1 AAACTTCAATTTGG-TCCCTCTGTTTTGAA
*
388117 AAACATTTAATTTGGTCCC
1 AAAC-TTCAATTTGGTCCC
388136 CAAATCGGTT
Statistics
Matches: 61, Mismatches: 13, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
29 1 0.02
30 19 0.31
31 18 0.30
32 10 0.16
33 12 0.20
34 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.38
Consensus pattern (29 bp):
AAACTTCAATTTGGTCCCTCTGTTTTGAA
Found at i:388119 original size:63 final size:63
Alignment explanation
Indices: 388020--388145 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 63
388010 TTGCTAAAAG
*
388020 GGGTAAACTTCATTTTGGCTCCCTCTGTTTTGAAAAACATTCAATTTGGTCCCCAAATCGGTT
1 GGGTAAACTTCATTTTGGCTCCCTCTGTTTTAAAAAACATTCAATTTGGTCCCCAAATCGGTT
*
388083 GGGTAAACTTCATTTTGGCTCCCTCTGTTTTAAAAAACATTTAATTTGGTCCCCAAATCGGTT
1 GGGTAAACTTCATTTTGGCTCCCTCTGTTTTAAAAAACATTCAATTTGGTCCCCAAATCGGTT
388146 TAATTCTCTT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (63 bp):
GGGTAAACTTCATTTTGGCTCCCTCTGTTTTAAAAAACATTCAATTTGGTCCCCAAATCGGTT
Found at i:388408 original size:18 final size:18
Alignment explanation
Indices: 388374--388407 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
388364 ATTACTCATA
*
388374 TTTGCTTTTTTTATTTTC
1 TTTGCTTTTTATATTTTC
388392 TTTG-TTTTTATATTTT
1 TTTGCTTTTTATATTTT
388408 TTATTCATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.09, C:0.06, G:0.06, T:0.79
Consensus pattern (18 bp):
TTTGCTTTTTATATTTTC
Found at i:399002 original size:14 final size:14
Alignment explanation
Indices: 398967--398993 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
398957 AAAAAAAATG
398967 AAAAAAACAAAAAC
1 AAAAAAACAAAAAC
398981 AAAAAAACAAAAA
1 AAAAAAACAAAAA
398994 GAGAAAAACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAACAAAAAC
Found at i:399969 original size:105 final size:105
Alignment explanation
Indices: 399787--400699 Score: 1452
Period size: 105 Copynumber: 8.7 Consensus size: 105
399777 AGGTTTTACC
399787 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * * * *
399852 ACGAAGAGACCACTGGTTGTCCACAAAAATCTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
399892 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * *
399957 ACGAAGGGACCACTGGTTGTCAACAAACGTTTCTCAATTC
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* *
399997 CAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACA
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
400062 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTC
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* *
400102 CAGAGTCAAGTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
400167 ACGAAGGGACCGCTGGTTGTCAATAAACATTTCCTC-ATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTT-CTCAATTT
*
400207 CAGAGCCAATTTCAACTTCACAACGAAGAATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
400272 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTC
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* *
400312 CAGAGTCAAGTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
400377 ACGAAGGGACCGCTGGTTGTCAATAAACATTTCCTC-ATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTT-CTCAATTT
* *
400417 CAGAGCCAATTTCAACTTCACAACGAAGAATATTGGACTCCAGACAACGCAAGTTCAACTTCACA
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* *
400482 ACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* *
400522 CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCATGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * * * *
400587 ACGAAGGGACCGCTGGTTGTCAATAAATAACTTCCCAACTT
66 ACGAAGGGACCGCTGGTTGTCAACAAA-CATTTCTCAATTT
* **** *
400628 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAGACAGTATAAGTTCAACGTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
400693 ACGAAGG
66 ACGAAGG
400700 AGATATATAC
Statistics
Matches: 757, Mismatches: 46, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
104 5 0.01
105 672 0.89
106 80 0.11
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
Found at i:401138 original size:41 final size:41
Alignment explanation
Indices: 401077--401155 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
401067 ATTTCGTCTT
*
401077 CACACTTTTATAGTACTTACATATATATATTAGTATTACTC
1 CACACTTTTATAATACTTACATATATATATTAGTATTACTC
*
401118 CACACTTTTATAATATTTACATATATATATTAGTATTA
1 CACACTTTTATAATACTTACATATATATATTAGTATTA
401156 ATTTTATTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.37, C:0.14, G:0.04, T:0.46
Consensus pattern (41 bp):
CACACTTTTATAATACTTACATATATATATTAGTATTACTC
Found at i:402104 original size:31 final size:29
Alignment explanation
Indices: 402060--402171 Score: 73
Period size: 30 Copynumber: 3.6 Consensus size: 29
402050 TAAAAGGGGT
*
402060 AAACTTCATTTTGGCTCCCTCTGTTTTGAA
1 AAACTTCAATTTGG-TCCCTCTGTTTTGAA
* * **
402090 AAACATTCAATTTGGTCCC-CAAATCGGTTGGGT
1 AAAC-TTCAATTTGGTCCCTC---T-GTTTTGAA
* *
402123 AAACTTCATTTTGGCTCCCTCTGTTTTAAA
1 AAACTTCAATTTGG-TCCCTCTGTTTTGAA
*
402153 AAACATTTAATTTGGTCCC
1 AAAC-TTCAATTTGGTCCC
402172 CAAATCGGTT
Statistics
Matches: 61, Mismatches: 13, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
29 1 0.02
30 19 0.31
31 18 0.30
32 10 0.16
33 12 0.20
34 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.38
Consensus pattern (29 bp):
AAACTTCAATTTGGTCCCTCTGTTTTGAA
Found at i:402155 original size:63 final size:63
Alignment explanation
Indices: 402056--402181 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 63
402046 TTACTAAAAG
*
402056 GGGTAAACTTCATTTTGGCTCCCTCTGTTTTGAAAAACATTCAATTTGGTCCCCAAATCGGTT
1 GGGTAAACTTCATTTTGGCTCCCTCTGTTTTAAAAAACATTCAATTTGGTCCCCAAATCGGTT
*
402119 GGGTAAACTTCATTTTGGCTCCCTCTGTTTTAAAAAACATTTAATTTGGTCCCCAAATCGGTT
1 GGGTAAACTTCATTTTGGCTCCCTCTGTTTTAAAAAACATTCAATTTGGTCCCCAAATCGGTT
402182 TAATTCCCTT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (63 bp):
GGGTAAACTTCATTTTGGCTCCCTCTGTTTTAAAAAACATTCAATTTGGTCCCCAAATCGGTT
Found at i:402443 original size:17 final size:16
Alignment explanation
Indices: 402407--402445 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
402397 TATATTACTC
*
402407 ATATTTGCTTTTTTTT
1 ATATTTTCTTTTTTTT
402423 -TATTTTCTTTGTTTTT
1 ATATTTTCTTT-TTTTT
402439 ATATTTT
1 ATATTTT
402446 TTATTCATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 9 0.45
16 5 0.25
17 6 0.30
ACGTcount: A:0.13, C:0.05, G:0.05, T:0.77
Consensus pattern (16 bp):
ATATTTTCTTTTTTTT
Found at i:403657 original size:32 final size:33
Alignment explanation
Indices: 403539--403657 Score: 116
Period size: 33 Copynumber: 3.6 Consensus size: 33
403529 AACTTATATG
* * *
403539 ATATTAACTCGATCCGAAAATCAAATCGATCTG
1 ATATTAACCCGACCCGAAAATCAAATCGATCTA
* * * *
403572 ATATTGACCCTGACCC-AAAATCTAACCGATCGA
1 ATATTAACCC-GACCCGAAAATCAAATCGATCTA
**
403605 ATATTAACCCGACCTAAAAATC-AATCGATCTA
1 ATATTAACCCGACCCGAAAATCAAATCGATCTA
* *
403637 ATAGTCACCCGACCCGAAAAT
1 ATATTAACCCGACCCGAAAAT
403658 TGATCCGACC
Statistics
Matches: 69, Mismatches: 15, Indels: 5
0.78 0.17 0.06
Matches are distributed among these distances:
32 29 0.42
33 36 0.52
34 4 0.06
ACGTcount: A:0.39, C:0.27, G:0.11, T:0.23
Consensus pattern (33 bp):
ATATTAACCCGACCCGAAAATCAAATCGATCTA
Found at i:405830 original size:10 final size:10
Alignment explanation
Indices: 405815--405839 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
405805 TCAAATTTGT
405815 ATATTTTATA
1 ATATTTTATA
405825 ATATTTTATA
1 ATATTTTATA
405835 ATATT
1 ATATT
405840 ACGAAGTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
ATATTTTATA
Found at i:419711 original size:23 final size:23
Alignment explanation
Indices: 419685--419737 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
419675 ATTGCACCTA
*
419685 AGTGCCACGTAGAGTTACACCAG-
1 AGTGCCACGTAGAATTACACC-GT
* *
419708 AGTGCCGCGTAGAATTGCACCGT
1 AGTGCCACGTAGAATTACACCGT
419731 AGTGCCA
1 AGTGCCA
419738 TATAATAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
22 1 0.04
23 24 0.96
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.19
Consensus pattern (23 bp):
AGTGCCACGTAGAATTACACCGT
Found at i:419924 original size:103 final size:103
Alignment explanation
Indices: 419745--419970 Score: 409
Period size: 103 Copynumber: 2.2 Consensus size: 103
419735 CCATATAATA
*
419745 ATGT-CCATAAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGT
1 ATGTCCCA-AAGGACCACATATAATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGT
419809 GTCTCACCAGACCTCACACATGTTCCAAAGAATACATAT
65 GTCTCACCAGACCTCACACATGTTCCAAAGAATACATAT
*
419848 ATGTCCCGAAGGACCACATATAATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTG
1 ATGTCCCAAAGGACCACATATAATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTG
*
419913 TCTCACTAGACCTCACACATGTTCCAAAGAATACATAT
66 TCTCACCAGACCTCACACATGTTCCAAAGAATACATAT
419951 ATGTCCCAAAGGACCACATA
1 ATGTCCCAAAGGACCACATA
419971 GACCCTCTAC
Statistics
Matches: 118, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
103 116 0.98
104 2 0.02
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.25
Consensus pattern (103 bp):
ATGTCCCAAAGGACCACATATAATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTG
TCTCACCAGACCTCACACATGTTCCAAAGAATACATAT
Found at i:426646 original size:23 final size:22
Alignment explanation
Indices: 426620--426683 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
426610 CAGCTCATAT
426620 AATTGCACCTAAGTGCCACGTAG
1 AATTGCACCT-AGTGCCACGTAG
* * *
426643 AATTGCACCGGAGTGTCGCGTAG
1 AATTGCACC-TAGTGCCACGTAG
426666 AATTGCACCGTAGTGCCA
1 AATTGCACC-TAGTGCCA
426684 TATAATAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.22
Consensus pattern (22 bp):
AATTGCACCTAGTGCCACGTAG
Found at i:426878 original size:103 final size:103
Alignment explanation
Indices: 426699--426916 Score: 409
Period size: 103 Copynumber: 2.1 Consensus size: 103
426689 TAATATCCAT
*
426699 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCATGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
* *
426764 GACCTCACACATGTTCCAAAGAATACATATATGTCTCG
66 GACCTCACACATGTTCCAAAGAATACATATATATCCCG
426802 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
426867 GACCTCACACATGTTCCAAAGAATACATATATATCCCG
66 GACCTCACACATGTTCCAAAGAATACATATATATCCCG
426905 AAGGACCACATA
1 AAGGACCACATA
426917 GACCCTCTAC
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 112 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACCTCACACATGTTCCAAAGAATACATATATATCCCG
Found at i:433587 original size:24 final size:24
Alignment explanation
Indices: 433537--433600 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
433527 CAGCTCATAT
*
433537 AATTGCACCTAAGTG-CCACGTAG
1 AATTGCACCGAAGTGCCCACGTAG
* *
433560 AATTGCACCGGAGTGCCCGCGTAG
1 AATTGCACCGAAGTGCCCACGTAG
*
433584 AATTGCACCGTAGTGCC
1 AATTGCACCGAAGTGCC
433601 ATATAATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
23 13 0.36
24 23 0.64
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (24 bp):
AATTGCACCGAAGTGCCCACGTAG
Found at i:433800 original size:103 final size:103
Alignment explanation
Indices: 433617--433834 Score: 400
Period size: 103 Copynumber: 2.1 Consensus size: 103
433607 TAATATCCAT
* *
433617 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAATGATCATGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
*
433682 GACCTCACACTTGTTCCAAAGAATACATATATGTCCCG
66 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
433720 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
*
433785 GACCTCACACATGTTCCAAAGAATACATATTTGTCCCG
66 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
433823 AAGGACCACATA
1 AAGGACCACATA
433835 GACCCTCTAC
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 111 1.00
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:436673 original size:23 final size:22
Alignment explanation
Indices: 436621--436673 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
436611 GGAATCGATA
*
436621 CCCTTGAAGGGGAACCGATTCC
1 CCCTTGAAGAGGAACCGATTCC
* *
436643 CCCTTTGAATAGGAACTGATTCC
1 CCC-TTGAAGAGGAACCGATTCC
436666 CTCCTTGA
1 C-CCTTGA
436674 GGGAATCGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 3 0.12
23 21 0.81
24 2 0.08
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (22 bp):
CCCTTGAAGAGGAACCGATTCC
Found at i:438597 original size:12 final size:12
Alignment explanation
Indices: 438580--438613 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
438570 TGAATTTTAA
438580 GATTTTCTAAAT
1 GATTTTCTAAAT
438592 GATTTTCTAAAT
1 GATTTTCTAAAT
438604 GATTTTCTAA
1 GATTTTCTAA
438614 GTATATTCGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.50
Consensus pattern (12 bp):
GATTTTCTAAAT
Found at i:441571 original size:12 final size:12
Alignment explanation
Indices: 441554--441592 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
441544 GCTCGATTCA
441554 AGCTCGATTTTG
1 AGCTCGATTTTG
**
441566 AGCTCGA-TTCA
1 AGCTCGATTTTG
441577 AGCTCGATTTTG
1 AGCTCGATTTTG
441589 AGCT
1 AGCT
441593 TAATTGAAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 9 0.41
12 13 0.59
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.36
Consensus pattern (12 bp):
AGCTCGATTTTG
Found at i:441572 original size:23 final size:23
Alignment explanation
Indices: 441518--441606 Score: 106
Period size: 23 Copynumber: 3.8 Consensus size: 23
441508 AAAAATTCAG
* ** *
441518 GAGCTCGATTGAAGCTCGAGACTC
1 GAGCTCGATTCAAGCTCGA-TTTT
441542 GAGCTCGATTCAAGCTCGATTTT
1 GAGCTCGATTCAAGCTCGATTTT
441565 GAGCTCGATTCAAGCTCGATTTT
1 GAGCTCGATTCAAGCTCGATTTT
** *
441588 GAGCTTAATTGAAGCTCGA
1 GAGCTCGATTCAAGCTCGA
441607 ACTCGATTCA
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
23 40 0.69
24 18 0.31
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (23 bp):
GAGCTCGATTCAAGCTCGATTTT
Found at i:443026 original size:19 final size:19
Alignment explanation
Indices: 443002--443051 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
442992 ATGCAATTAA
443002 TGCATCGATGCATAAGGAG
1 TGCATCGATGCATAAGGAG
443021 TGCATCGATGCATAAGGAG
1 TGCATCGATGCATAAGGAG
443040 TGCATCGATGCA
1 TGCATCGATGCA
443052 CATGTTAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (19 bp):
TGCATCGATGCATAAGGAG
Found at i:446084 original size:25 final size:26
Alignment explanation
Indices: 446056--446125 Score: 79
Period size: 28 Copynumber: 2.7 Consensus size: 26
446046 ATAGTCGAGG
*
446056 GTTCTACGTGGTCCTATAGG-TATGT
1 GTTCTACGTGGTCCTACAGGATATGT
* *
446081 GTTCTACATGGTCCTACGGGACATATGT
1 GTTCTACGTGGTCCTACAGG--ATATGT
*
446109 GTTCTATGTGGTCCTAC
1 GTTCTACGTGGTCCTAC
446126 GGGACAAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
25 17 0.46
28 20 0.54
ACGTcount: A:0.17, C:0.20, G:0.26, T:0.37
Consensus pattern (26 bp):
GTTCTACGTGGTCCTACAGGATATGT
Found at i:446112 original size:28 final size:28
Alignment explanation
Indices: 446076--446131 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
446066 GTCCTATAGG
446076 TATGTGTTCTACATGGTCCTACGGGACA
1 TATGTGTTCTACATGGTCCTACGGGACA
**
446104 TATGTGTTCTATGTGGTCCTACGGGACA
1 TATGTGTTCTACATGGTCCTACGGGACA
446132 AATTTCTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.34
Consensus pattern (28 bp):
TATGTGTTCTACATGGTCCTACGGGACA
Found at i:451985 original size:8 final size:8
Alignment explanation
Indices: 451972--452012 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
451962 CTCATTTTCA
451972 GAGAATTT
1 GAGAATTT
451980 GAGAATTT
1 GAGAATTT
*
451988 -AGAGTTT
1 GAGAATTT
*
451995 GGGAATTT
1 GAGAATTT
452003 GAGAATTT
1 GAGAATTT
452011 GA
1 GA
452013 AAGCTTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (8 bp):
GAGAATTT
Found at i:452389 original size:121 final size:123
Alignment explanation
Indices: 452083--452438 Score: 596
Period size: 128 Copynumber: 2.9 Consensus size: 123
452073 TAATCGGAGT
452083 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCACCTTCCATTATTTTGTCAGAGAATATGTTAT
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCG--CCTTCCATTATTTTGTCAGA-AATATGTTAT
452148 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATATCAGTACCTATTATTTC
63 CATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAG--ATATCAGTACCTATTATTTC
452211 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCGCATTCCATTATTTTGTCAG-AATATGTTATC
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGC-C-TTCCATTATTTTGTCAGAAATATGTTATC
452275 ATTGCCCTA-T-TGTCACTCATGTCCCTCGGGGACACTAGATATCAGTACCTATTATTTC
64 ATTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATCAGTACCTATTATTTC
*
452333 ACTA-TCACATGAAGACGCGTTCCCGGGGGCGCCTTCCATTATTTTGTCAGATAATATGTTATCA
1 ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCCTTCCATTATTTTGTCAGA-AATATGTTATCA
452397 TTGCCCTATTATGTCACTCATGTCCCTC-GGGACACTAGATAT
65 TTGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATAT
452439 ATCAGTAAAT
Statistics
Matches: 221, Mismatches: 1, Indels: 18
0.92 0.00 0.08
Matches are distributed among these distances:
119 17 0.08
120 1 0.00
121 47 0.21
122 39 0.18
123 17 0.08
124 28 0.13
125 1 0.00
126 21 0.10
127 1 0.00
128 49 0.22
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (123 bp):
ACTATTCACATGAAGGCGCGTTCCCGGGGGCGCCTTCCATTATTTTGTCAGAAATATGTTATCAT
TGCCCTATTATGTCACTCATGTCCCTCGGGGACACTAGATATCAGTACCTATTATTTC
Found at i:452871 original size:33 final size:32
Alignment explanation
Indices: 452833--452934 Score: 114
Period size: 33 Copynumber: 3.1 Consensus size: 32
452823 ATTAAGTTGA
* *
452833 ATTTAATGTTAAATTTCGAATACTATACTTTAT
1 ATTTAAT-TTAAATTTCGAATAATATAATTTAT
**
452866 ATTTAAATTTAAATTTCGAATAATATTTTTTAT
1 ATTT-AATTTAAATTTCGAATAATATAATTTAT
* * * *
452899 TTTTATTTTAAATTTTGAATAATATAATTTGT
1 ATTTAATTTAAATTTCGAATAATATAATTTAT
452931 ATTT
1 ATTT
452935 TAAAAACATT
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
32 26 0.45
33 29 0.50
34 3 0.05
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.55
Consensus pattern (32 bp):
ATTTAATTTAAATTTCGAATAATATAATTTAT
Found at i:453474 original size:21 final size:21
Alignment explanation
Indices: 453444--453537 Score: 118
Period size: 21 Copynumber: 4.5 Consensus size: 21
453434 TATGGTATAA
453444 AACCCTGCGGGCTAGGCATGT
1 AACCCTGCGGGCTAGGCATGT
*
453465 AA-CCTGGCGGGCTAGGAATGT
1 AACCCT-GCGGGCTAGGCATGT
* * *
453486 AACCCTACGGGCTCGGAATGT
1 AACCCTGCGGGCTAGGCATGT
* *
453507 AACCCTGCGGGCTCGGAATGT
1 AACCCTGCGGGCTAGGCATGT
453528 AACCCTGCGG
1 AACCCTGCGG
453538 AGATGGCATA
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
20 3 0.04
21 61 0.91
22 3 0.04
ACGTcount: A:0.21, C:0.28, G:0.33, T:0.18
Consensus pattern (21 bp):
AACCCTGCGGGCTAGGCATGT
Found at i:453567 original size:21 final size:21
Alignment explanation
Indices: 453541--453588 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
453531 CCTGCGGAGA
*
453541 TGGCATATAAACTGGTGGGCT
1 TGGCATATAAACTGGAGGGCT
* *
453562 TGGCATATGAAGTGGAGGGCT
1 TGGCATATAAACTGGAGGGCT
*
453583 AGGCAT
1 TGGCAT
453589 GTACCCCTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.12, G:0.38, T:0.25
Consensus pattern (21 bp):
TGGCATATAAACTGGAGGGCT
Found at i:455292 original size:18 final size:20
Alignment explanation
Indices: 455258--455295 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
455248 TATAATTAGC
455258 AAAAAATTAATATTAAATTT
1 AAAAAATTAATATTAAATTT
455278 AAAAAATT-ATA-TAAATTT
1 AAAAAATTAATATTAAATTT
455296 CTTACCACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
19 3 0.17
20 8 0.44
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAAAATTAATATTAAATTT
Found at i:458164 original size:70 final size:69
Alignment explanation
Indices: 458051--458187 Score: 256
Period size: 70 Copynumber: 2.0 Consensus size: 69
458041 AATCTCGAGT
458051 GGAGAGCTCGAAGGCGAAGGCCTTGTTGACGATATCCTCAGCTCCCTTGACCGTGAGGGCATTCG
1 GGAGAGCTCGAAGGCGAAGGCCTTGTTGACGATATCCTCAGCTCCCTTGACCGTGA-GGCATTCG
458116 CCGTG
65 CCGTG
*
458121 GGAGAGCTCGAAGGCGAAGGCCTTGTTGACTATATCCTCAGCTCCCTTGACCGTGAGGCATTCGC
1 GGAGAGCTCGAAGGCGAAGGCCTTGTTGACGATATCCTCAGCTCCCTTGACCGTGAGGCATTCGC
458186 CG
66 CG
458188 ACCGAAACAA
Statistics
Matches: 66, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
69 11 0.17
70 55 0.83
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (69 bp):
GGAGAGCTCGAAGGCGAAGGCCTTGTTGACGATATCCTCAGCTCCCTTGACCGTGAGGCATTCGC
CGTG
Found at i:476051 original size:22 final size:22
Alignment explanation
Indices: 476026--476068 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
476016 TAACTCCCGA
* *
476026 AATTATATCATATAACCCCTGG
1 AATTAAATCAAATAACCCCTGG
*
476048 AATTAAATCAAATAACTCCTG
1 AATTAAATCAAATAACCCCTG
476069 TAACTCCTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (22 bp):
AATTAAATCAAATAACCCCTGG
Found at i:476354 original size:6 final size:6
Alignment explanation
Indices: 476343--476409 Score: 116
Period size: 6 Copynumber: 11.2 Consensus size: 6
476333 GACACGTATT
* *
476343 ACCACG ACCACG ACCACG ACCACG ACCACG ACCTCG ACCTCG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
476391 ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG A
476410 GCCGAGCCGA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.31, C:0.49, G:0.16, T:0.03
Consensus pattern (6 bp):
ACCACG
Found at i:476417 original size:5 final size:5
Alignment explanation
Indices: 476407--476460 Score: 63
Period size: 5 Copynumber: 10.8 Consensus size: 5
476397 ACCACGACCA
* * * * *
476407 CGAGC CGAGC CGAGC CGAGC CGTGC CGTGT CGAGC CTAGC CGAGC CGAGA
1 CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC
476457 CGAG
1 CGAG
476461 ACGGACGGAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.19, C:0.35, G:0.39, T:0.07
Consensus pattern (5 bp):
CGAGC
Found at i:482326 original size:6 final size:6
Alignment explanation
Indices: 482315--482357 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
482305 GACACGTATT
482315 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG A
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG A
482358 GCCGAGCCGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.35, C:0.49, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:482406 original size:5 final size:5
Alignment explanation
Indices: 482355--482403 Score: 89
Period size: 5 Copynumber: 9.8 Consensus size: 5
482345 ACCACGACCA
*
482355 CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGA CGAG
1 CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAGC CGAG
482404 ACGGACGGAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.22, C:0.37, G:0.41, T:0.00
Consensus pattern (5 bp):
CGAGC
Found at i:495878 original size:36 final size:37
Alignment explanation
Indices: 495803--495883 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
495793 CCCATTCCTA
*
495803 TTTTC-AATAAACATCTACCAAACTTTGAAAAACATT
1 TTTTCAAAGAAACATCTACCAAACTTTGAAAAACATT
*
495839 TTTTCAAAGAAACATTTACCAAACTTTGAAAAACA-T
1 TTTTCAAAGAAACATCTACCAAACTTTGAAAAACATT
495875 TTTTCAAAG
1 TTTTCAAAG
495884 TTGGTTGCCA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 15 0.36
37 27 0.64
ACGTcount: A:0.44, C:0.17, G:0.05, T:0.33
Consensus pattern (37 bp):
TTTTCAAAGAAACATCTACCAAACTTTGAAAAACATT
Found at i:497096 original size:24 final size:24
Alignment explanation
Indices: 497051--497100 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
497041 ATAAAGAACC
*
497051 AAAATAAACTTAAATATACCATTA
1 AAAATAAACTTAAACATACCATTA
497075 AAAATAAAGCTTAAACAT-CCATTA
1 AAAATAAA-CTTAAACATACCATTA
497099 AA
1 AA
497101 TCAACCACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.58, C:0.14, G:0.02, T:0.26
Consensus pattern (24 bp):
AAAATAAACTTAAACATACCATTA
Found at i:509147 original size:21 final size:21
Alignment explanation
Indices: 509106--509148 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
509096 GTAACTAAAT
* *
509106 AAAAATGAGTTCTATAACATA
1 AAAAATAAGATCTATAACATA
509127 AAAAATAAGATCT-TAAGCATA
1 AAAAATAAGATCTATAA-CATA
509148 A
1 A
509149 TGCAGATTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.26
Consensus pattern (21 bp):
AAAAATAAGATCTATAACATA
Found at i:512627 original size:24 final size:24
Alignment explanation
Indices: 512595--512657 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 24
512585 AGAGTCCATG
* *
512595 TCAAGTATCATATAAAAATTCAGA
1 TCAAATATCATATAAAAATCCAGA
* * *
512619 TCAAATATCATATCAGAATCCAGG
1 TCAAATATCATATAAAAATCCAGA
*
512643 TCAAA-ATCAGATAAA
1 TCAAATATCATATAAA
512658 CTATTTATAT
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
23 7 0.23
24 24 0.77
ACGTcount: A:0.49, C:0.16, G:0.10, T:0.25
Consensus pattern (24 bp):
TCAAATATCATATAAAAATCCAGA
Found at i:513389 original size:29 final size:28
Alignment explanation
Indices: 513347--513420 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 28
513337 GTTGAACATT
513347 TTACACAAATAGCACCCTTTTTA-AAATAA
1 TTAC-CAAATAGCACCC-TTTTAGAAATAA
*
513376 TTACCAATATAGCACCCTTTTAGAATTAA
1 TTACCAA-ATAGCACCCTTTTAGAAATAA
*
513405 TTCCCAAAATAGCACC
1 TTACC-AAATAGCACC
513421 AAAACCGAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
28 8 0.20
29 30 0.75
30 2 0.05
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (28 bp):
TTACCAAATAGCACCCTTTTAGAAATAA
Found at i:513479 original size:18 final size:18
Alignment explanation
Indices: 513456--513515 Score: 104
Period size: 18 Copynumber: 3.4 Consensus size: 18
513446 CACCGGTCAA
513456 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACGGGT
513474 CGGGTCGGGTCAAC-GGT
1 CGGGTCGGGTCAACGGGT
513491 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACGGGT
*
513509 CCGGTCG
1 CGGGTCG
513516 TGACCGGTCA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
17 17 0.43
18 23 0.57
ACGTcount: A:0.10, C:0.25, G:0.48, T:0.17
Consensus pattern (18 bp):
CGGGTCGGGTCAACGGGT
Found at i:513493 original size:17 final size:17
Alignment explanation
Indices: 513456--513506 Score: 93
Period size: 17 Copynumber: 2.9 Consensus size: 17
513446 CACCGGTCAA
513456 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAAC-GGT
513474 CGGGTCGGGTCAACGGT
1 CGGGTCGGGTCAACGGT
513491 CGGGTCGGGTCAACGG
1 CGGGTCGGGTCAACGG
513507 GTCCGGTCGT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 19 0.58
18 14 0.42
ACGTcount: A:0.12, C:0.24, G:0.49, T:0.16
Consensus pattern (17 bp):
CGGGTCGGGTCAACGGT
Found at i:513509 original size:13 final size:13
Alignment explanation
Indices: 513450--513479 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
513440 GGATAGCACC
513450 GGTCAACGGGTCG
1 GGTCAACGGGTCG
513463 GGTCAACGGGTCG
1 GGTCAACGGGTCG
513476 GGTC
1 GGTC
513480 GGGTCAACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.23, G:0.47, T:0.17
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:513534 original size:10 final size:10
Alignment explanation
Indices: 513518--513563 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
513508 TCCGGTCGTG
513518 ACCGGTCAAA
1 ACCGGTCAAA
*
513528 ACTGGTCCAAA
1 ACCGGT-CAAA
*
513539 ACCGGT-TAA
1 ACCGGTCAAA
513548 ACCGGTCAAA
1 ACCGGTCAAA
513558 ACCGGT
1 ACCGGT
513564 TTCCAGCGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
9 8 0.27
10 13 0.43
11 9 0.30
ACGTcount: A:0.35, C:0.28, G:0.22, T:0.15
Consensus pattern (10 bp):
ACCGGTCAAA
Found at i:519817 original size:24 final size:24
Alignment explanation
Indices: 519785--519848 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 24
519775 AGAGTCCATG
* *
519785 TCAAGTATCATATAAAAATTCAGA
1 TCAAATATCATATAAAAATCCAGA
* * *
519809 TCAAATATCATATCAGAATCCAGG
1 TCAAATATCATATAAAAATCCAGA
* *
519833 TCAAAAATCAGATAAA
1 TCAAATATCATATAAA
519849 CTATTTATAT
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.50, C:0.16, G:0.09, T:0.25
Consensus pattern (24 bp):
TCAAATATCATATAAAAATCCAGA
Found at i:520582 original size:29 final size:28
Alignment explanation
Indices: 520540--520613 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 28
520530 GTTGAACATT
520540 TTACACAAATAGCACCCTTTTTA-AAATAA
1 TTAC-CAAATAGCACCC-TTTTAGAAATAA
*
520569 TTACCAATATAGCACCCTTTTAGAATTAA
1 TTACCAA-ATAGCACCCTTTTAGAAATAA
*
520598 TTCCCAAAATAGCACC
1 TTACC-AAATAGCACC
520614 AAACCGAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
28 8 0.20
29 30 0.75
30 2 0.05
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (28 bp):
TTACCAAATAGCACCCTTTTAGAAATAA
Found at i:520671 original size:18 final size:18
Alignment explanation
Indices: 520648--520707 Score: 104
Period size: 18 Copynumber: 3.4 Consensus size: 18
520638 CACCGGTCAA
520648 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACGGGT
520666 CGGGTCGGGTCAAC-GGT
1 CGGGTCGGGTCAACGGGT
520683 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACGGGT
*
520701 CAGGTCG
1 CGGGTCG
520708 TGACCGGTCA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
17 17 0.43
18 23 0.57
ACGTcount: A:0.12, C:0.23, G:0.48, T:0.17
Consensus pattern (18 bp):
CGGGTCGGGTCAACGGGT
Found at i:520685 original size:17 final size:17
Alignment explanation
Indices: 520648--520698 Score: 93
Period size: 17 Copynumber: 2.9 Consensus size: 17
520638 CACCGGTCAA
520648 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAAC-GGT
520666 CGGGTCGGGTCAACGGT
1 CGGGTCGGGTCAACGGT
520683 CGGGTCGGGTCAACGG
1 CGGGTCGGGTCAACGG
520699 GTCAGGTCGT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 19 0.58
18 14 0.42
ACGTcount: A:0.12, C:0.24, G:0.49, T:0.16
Consensus pattern (17 bp):
CGGGTCGGGTCAACGGT
Found at i:520706 original size:13 final size:13
Alignment explanation
Indices: 520642--520671 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
520632 GGATAGCACC
520642 GGTCAACGGGTCG
1 GGTCAACGGGTCG
520655 GGTCAACGGGTCG
1 GGTCAACGGGTCG
520668 GGTC
1 GGTC
520672 GGGTCAACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.23, G:0.47, T:0.17
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:520723 original size:10 final size:10
Alignment explanation
Indices: 520710--520755 Score: 67
Period size: 10 Copynumber: 4.6 Consensus size: 10
520700 TCAGGTCGTG
520710 ACCGGTCAAA
1 ACCGGTCAAA
520720 ACCGGTTCAAA
1 ACCGG-TCAAA
*
520731 ACCGGT-TAA
1 ACCGGTCAAA
520740 ACCGGTCAAA
1 ACCGGTCAAA
520750 ACCGGT
1 ACCGGT
520756 TTCCAGCGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 8 0.25
10 14 0.44
11 10 0.31
ACGTcount: A:0.35, C:0.28, G:0.22, T:0.15
Consensus pattern (10 bp):
ACCGGTCAAA
Found at i:520731 original size:11 final size:11
Alignment explanation
Indices: 520710--520756 Score: 66
Period size: 11 Copynumber: 4.6 Consensus size: 11
520700 TCAGGTCGTG
520710 ACCGG-TCAAA
1 ACCGGTTCAAA
520720 ACCGGTTCAAA
1 ACCGGTTCAAA
520731 ACCGGTT--AA
1 ACCGGTTCAAA
520740 ACCGG-TCAAA
1 ACCGGTTCAAA
520750 ACCGGTT
1 ACCGGTT
520757 TCCAGCGTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
8 1 0.03
9 7 0.21
10 12 0.36
11 13 0.39
ACGTcount: A:0.34, C:0.28, G:0.21, T:0.17
Consensus pattern (11 bp):
ACCGGTTCAAA
Found at i:520750 original size:19 final size:20
Alignment explanation
Indices: 520718--520756 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
520708 TGACCGGTCA
520718 AAACCGGTTCAAAACCGGTT
1 AAACCGGTTCAAAACCGGTT
520738 AAACCGG-TCAAAACCGGTT
1 AAACCGGTTCAAAACCGGTT
520757 TCCAGCGTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.18
Consensus pattern (20 bp):
AAACCGGTTCAAAACCGGTT
Found at i:524957 original size:7 final size:7
Alignment explanation
Indices: 524940--525019 Score: 153
Period size: 7 Copynumber: 11.6 Consensus size: 7
524930 CCGGGGGCCG
524940 GGGGCTC
1 GGGGCTC
524947 -GGGCTC
1 GGGGCTC
524953 GGGGCTC
1 GGGGCTC
524960 GGGGCTC
1 GGGGCTC
524967 GGGGCTC
1 GGGGCTC
524974 GGGGCTC
1 GGGGCTC
524981 GGGGCTC
1 GGGGCTC
524988 GGGGCTC
1 GGGGCTC
524995 GGGGCTC
1 GGGGCTC
525002 GGGGCTC
1 GGGGCTC
525009 GGGGCTC
1 GGGGCTC
525016 GGGG
1 GGGG
525020 TTTAGGGTTT
Statistics
Matches: 72, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
6 6 0.08
7 66 0.92
ACGTcount: A:0.00, C:0.28, G:0.59, T:0.14
Consensus pattern (7 bp):
GGGGCTC
Found at i:525027 original size:7 final size:7
Alignment explanation
Indices: 525017--531970 Score: 10048
Period size: 7 Copynumber: 1011.3 Consensus size: 7
525007 TCGGGGCTCG
525017 GGGTTTA
1 GGGTTTA
525024 GGGTTTA
1 GGGTTTA
525031 GGGTTTA
1 GGGTTTA
525038 GGGTTTA
1 GGGTTTA
*
525045 GGGCTTA
1 GGGTTTA
*
525052 GGGCTTA
1 GGGTTTA
*
525059 GGGCTTA
1 GGGTTTA
*
525066 GGGCTTA
1 GGGTTTA
*
525073 GGGCTTA
1 GGGTTTA
*
525080 GGGCTTA
1 GGGTTTA
*
525087 GGGCTTA
1 GGGTTTA
*
525094 GGGCTTA
1 GGGTTTA
*
525101 GGGCTTA
1 GGGTTTA
*
525108 GGGCTTA
1 GGGTTTA
*
525115 GGGCTTA
1 GGGTTTA
*
525122 GGGCTTA
1 GGGTTTA
*
525129 GGGCTTA
1 GGGTTTA
*
525136 GGGCTTA
1 GGGTTTA
*
525143 GGGCTTA
1 GGGTTTA
*
525150 GGGCTTA
1 GGGTTTA
*
525157 GGGCTTA
1 GGGTTTA
*
525164 GGGCTTA
1 GGGTTTA
*
525171 GGGCTTA
1 GGGTTTA
*
525178 GGGCTTA
1 GGGTTTA
*
525185 GGGCTTA
1 GGGTTTA
*
525192 GGGCTTA
1 GGGTTTA
*
525199 -GGCTTA
1 GGGTTTA
*
525205 GGGCTTA
1 GGGTTTA
*
525212 GGGCTTA
1 GGGTTTA
*
525219 GGGCTTA
1 GGGTTTA
*
525226 GGGCTTA
1 GGGTTTA
*
525233 GGGCTTA
1 GGGTTTA
*
525240 GGGCTTA
1 GGGTTTA
*
525247 GGGCTTA
1 GGGTTTA
*
525254 GGGCTTA
1 GGGTTTA
*
525261 GGGCTTA
1 GGGTTTA
*
525268 GGGCTTA
1 GGGTTTA
*
525275 GGGCTTA
1 GGGTTTA
*
525282 GGGCTTA
1 GGGTTTA
*
525289 GGGCTTA
1 GGGTTTA
*
525296 GGGCTTA
1 GGGTTTA
*
525303 GGGCTTA
1 GGGTTTA
*
525310 GGGCTTA
1 GGGTTTA
*
525317 GGGCTTA
1 GGGTTTA
*
525324 GGGCTTA
1 GGGTTTA
*
525331 GGGCTTA
1 GGGTTTA
*
525338 GGGCTTA
1 GGGTTTA
*
525345 GGGCTTA
1 GGGTTTA
*
525352 GGGCTTA
1 GGGTTTA
*
525359 GGGCTTA
1 GGGTTTA
*
525366 GGGCTTA
1 GGGTTTA
*
525373 GGGCTTA
1 GGGTTTA
*
525380 GGGCTTA
1 GGGTTTA
*
525387 GGGCTTA
1 GGGTTTA
*
525394 GGGCTTA
1 GGGTTTA
*
525401 GGGCTTA
1 GGGTTTA
*
525408 GGGCTTA
1 GGGTTTA
*
525415 GGGCTTA
1 GGGTTTA
*
525422 GGGCTTA
1 GGGTTTA
*
525429 GGGCTTA
1 GGGTTTA
*
525436 GGGCTTA
1 GGGTTTA
*
525443 GGGCTTA
1 GGGTTTA
*
525450 GGGCTTA
1 GGGTTTA
*
525457 GGGCTTA
1 GGGTTTA
*
525464 GGGCTTA
1 GGGTTTA
*
525471 GGGCTTA
1 GGGTTTA
*
525478 GGGCTTA
1 GGGTTTA
*
525485 GGGCTTA
1 GGGTTTA
*
525492 GGGCTTA
1 GGGTTTA
*
525499 GGGCTTA
1 GGGTTTA
*
525506 GGGCTTA
1 GGGTTTA
*
525513 GGGCTTA
1 GGGTTTA
*
525520 GGGCTTA
1 GGGTTTA
*
525527 GGGCTTA
1 GGGTTTA
*
525534 GGGCTTA
1 GGGTTTA
*
525541 -GGCTTA
1 GGGTTTA
*
525547 GGGCTTA
1 GGGTTTA
*
525554 GGGCTTA
1 GGGTTTA
*
525561 GGGCTTA
1 GGGTTTA
*
525568 GGGCTTA
1 GGGTTTA
*
525575 GGGCTTA
1 GGGTTTA
*
525582 GGGCTTA
1 GGGTTTA
*
525589 GGGCTTA
1 GGGTTTA
*
525596 GGGCTTA
1 GGGTTTA
*
525603 GGGCTTA
1 GGGTTTA
*
525610 GGGCTTA
1 GGGTTTA
*
525617 GGGCTTA
1 GGGTTTA
*
525624 GGGCTTA
1 GGGTTTA
*
525631 GGGCTTA
1 GGGTTTA
*
525638 GGGCTTA
1 GGGTTTA
*
525645 GGGCTTA
1 GGGTTTA
*
525652 GGGCTTA
1 GGGTTTA
*
525659 GGGCTTA
1 GGGTTTA
*
525666 GGGCTTA
1 GGGTTTA
*
525673 GGGCTTA
1 GGGTTTA
*
525680 GGGCTTA
1 GGGTTTA
*
525687 GGGCTTA
1 GGGTTTA
*
525694 GGGCTTA
1 GGGTTTA
*
525701 GGGCTTA
1 GGGTTTA
*
525708 GGGCTTA
1 GGGTTTA
*
525715 GGGCTTA
1 GGGTTTA
*
525722 GGGCTTA
1 GGGTTTA
*
525729 GGGCTTA
1 GGGTTTA
*
525736 GGGCTTA
1 GGGTTTA
*
525743 GGGCTTA
1 GGGTTTA
*
525750 GGGCTTA
1 GGGTTTA
*
525757 GGGCTTA
1 GGGTTTA
*
525764 GGGCTTA
1 GGGTTTA
*
525771 GGGCTTA
1 GGGTTTA
*
525778 GGGCTTA
1 GGGTTTA
*
525785 GGGCTTA
1 GGGTTTA
*
525792 GGGCTTA
1 GGGTTTA
*
525799 GGGCTTA
1 GGGTTTA
*
525806 GGGCTTA
1 GGGTTTA
*
525813 GGGCTTA
1 GGGTTTA
*
525820 GGGCTTA
1 GGGTTTA
*
525827 GGGCTTA
1 GGGTTTA
*
525834 GGGCTTA
1 GGGTTTA
*
525841 GGGCTTA
1 GGGTTTA
*
525848 GGGCTTA
1 GGGTTTA
*
525855 GGGCTTA
1 GGGTTTA
*
525862 GGGCTTA
1 GGGTTTA
*
525869 GGGCTTA
1 GGGTTTA
*
525876 GGGCTTA
1 GGGTTTA
*
525883 GGGCTTA
1 GGGTTTA
*
525890 GGGCTTA
1 GGGTTTA
*
525897 GGGCTTA
1 GGGTTTA
*
525904 GGGCTTA
1 GGGTTTA
*
525911 GGGCTTA
1 GGGTTTA
*
525918 GGGCTTA
1 GGGTTTA
*
525925 GGGCTTA
1 GGGTTTA
*
525932 GGGCTTA
1 GGGTTTA
*
525939 GGGCTTA
1 GGGTTTA
*
525946 GGGCTTA
1 GGGTTTA
*
525953 GGGCTTA
1 GGGTTTA
*
525960 GGGCTTA
1 GGGTTTA
*
525967 GGGCTTA
1 GGGTTTA
*
525974 GGGCTTA
1 GGGTTTA
*
525981 GGGCTTA
1 GGGTTTA
*
525988 GGGCTTA
1 GGGTTTA
*
525995 GGGCTTA
1 GGGTTTA
*
526002 GGGCTTA
1 GGGTTTA
*
526009 GGGCTTA
1 GGGTTTA
*
526016 GGGCTTA
1 GGGTTTA
*
526023 GGGCTTA
1 GGGTTTA
*
526030 GGGCTTA
1 GGGTTTA
*
526037 GGGCTTA
1 GGGTTTA
*
526044 GGGCTTA
1 GGGTTTA
*
526051 GGGCTTA
1 GGGTTTA
*
526058 GGGCTTA
1 GGGTTTA
*
526065 GGGCTTA
1 GGGTTTA
*
526072 GGGCTTA
1 GGGTTTA
*
526079 GGGCTTA
1 GGGTTTA
*
526086 GGGCTTA
1 GGGTTTA
*
526093 GGGCTTA
1 GGGTTTA
*
526100 GGGCTTA
1 GGGTTTA
*
526107 GGGCTTA
1 GGGTTTA
*
526114 GGGCTTA
1 GGGTTTA
*
526121 GGGCTTA
1 GGGTTTA
*
526128 GGGCTTA
1 GGGTTTA
*
526135 GGGCTTA
1 GGGTTTA
*
526142 GGGCTTA
1 GGGTTTA
*
526149 GGGCTTA
1 GGGTTTA
*
526156 GGGCTTA
1 GGGTTTA
*
526163 GGGCTTA
1 GGGTTTA
*
526170 GGGCTTA
1 GGGTTTA
*
526177 GGGCTTA
1 GGGTTTA
*
526184 GGGCTTA
1 GGGTTTA
*
526191 GGGCTTA
1 GGGTTTA
*
526198 GGGCTTA
1 GGGTTTA
*
526205 GGGCTTA
1 GGGTTTA
*
526212 GGGCTTA
1 GGGTTTA
*
526219 GGGCTTA
1 GGGTTTA
*
526226 GGGCTTA
1 GGGTTTA
*
526233 GGGCTTA
1 GGGTTTA
*
526240 GGGCTTA
1 GGGTTTA
*
526247 GGGCTTA
1 GGGTTTA
*
526254 GGGCTTA
1 GGGTTTA
*
526261 GGGCTTA
1 GGGTTTA
*
526268 GGGCTTA
1 GGGTTTA
*
526275 GGGCTTA
1 GGGTTTA
*
526282 GGGCTTA
1 GGGTTTA
*
526289 GGGCTTA
1 GGGTTTA
*
526296 GGGCTTA
1 GGGTTTA
*
526303 GGGCTTA
1 GGGTTTA
*
526310 GGGCTTA
1 GGGTTTA
*
526317 GGGCTTA
1 GGGTTTA
*
526324 GGGCTTA
1 GGGTTTA
*
526331 GGGCTTA
1 GGGTTTA
*
526338 GGGCTTA
1 GGGTTTA
*
526345 GGGCTTA
1 GGGTTTA
*
526352 GGGCTTA
1 GGGTTTA
*
526359 GGGCTTA
1 GGGTTTA
*
526366 GGGCTTA
1 GGGTTTA
*
526373 GGGCTTA
1 GGGTTTA
*
526380 GGGCTTA
1 GGGTTTA
*
526387 GGGCTTA
1 GGGTTTA
*
526394 GGGCTTA
1 GGGTTTA
*
526401 GGGCTTA
1 GGGTTTA
*
526408 GGGCTTA
1 GGGTTTA
*
526415 GGGCTTA
1 GGGTTTA
*
526422 GGGCTTA
1 GGGTTTA
*
526429 GGGCTTA
1 GGGTTTA
*
526436 GGGCTTA
1 GGGTTTA
*
526443 GGGCTTA
1 GGGTTTA
*
526450 GGGCTTA
1 GGGTTTA
*
526457 GGGCTTA
1 GGGTTTA
*
526464 GGGCTTA
1 GGGTTTA
*
526471 GGGCTTA
1 GGGTTTA
*
526478 GGGCTTA
1 GGGTTTA
*
526485 GGGCTTA
1 GGGTTTA
*
526492 GGGCTTA
1 GGGTTTA
*
526499 -GGCTTA
1 GGGTTTA
*
526505 GGGCTTA
1 GGGTTTA
*
526512 GGGCTTA
1 GGGTTTA
*
526519 GGGCTTA
1 GGGTTTA
*
526526 GGGCTTA
1 GGGTTTA
*
526533 GGGCTTA
1 GGGTTTA
*
526540 GGGCTTA
1 GGGTTTA
*
526547 GGGCTTA
1 GGGTTTA
*
526554 GGGCTTA
1 GGGTTTA
*
526561 GGGCTTA
1 GGGTTTA
*
526568 GGGCTTA
1 GGGTTTA
*
526575 GGGCTTA
1 GGGTTTA
*
526582 GGGCTTA
1 GGGTTTA
*
526589 GGGCTTA
1 GGGTTTA
*
526596 GGGCTTA
1 GGGTTTA
*
526603 GGGCTTA
1 GGGTTTA
*
526610 GGGCTTA
1 GGGTTTA
*
526617 GGGCTTA
1 GGGTTTA
*
526624 GGGCTTA
1 GGGTTTA
*
526631 GGGCTTA
1 GGGTTTA
*
526638 GGGCTTA
1 GGGTTTA
*
526645 GGGCTTA
1 GGGTTTA
*
526652 GGGCTTA
1 GGGTTTA
*
526659 GGGCTTA
1 GGGTTTA
*
526666 GGGCTTA
1 GGGTTTA
*
526673 GGGCTTA
1 GGGTTTA
*
526680 GGGCTTA
1 GGGTTTA
*
526687 -GGCTTA
1 GGGTTTA
*
526693 GGGCTTA
1 GGGTTTA
*
526700 GGGCTTA
1 GGGTTTA
*
526707 GGGCTTA
1 GGGTTTA
*
526714 GGGCTTA
1 GGGTTTA
*
526721 GGGCTTA
1 GGGTTTA
526728 GGG-TTA
1 GGGTTTA
*
526734 GGGCTTA
1 GGGTTTA
*
526741 GGGCTTA
1 GGGTTTA
*
526748 GGGCTTA
1 GGGTTTA
526755 GGG-TTA
1 GGGTTTA
526761 GGGTTTA
1 GGGTTTA
526768 GGGTTTA
1 GGGTTTA
526775 GGGTTTA
1 GGGTTTA
526782 GGG-TTA
1 GGGTTTA
526788 GGGTTTA
1 GGGTTTA
526795 GGGTTTA
1 GGGTTTA
526802 GGG-TTA
1 GGGTTTA
526808 GGGTTTA
1 GGGTTTA
526815 GGGTTTA
1 GGGTTTA
526822 GGGTTTA
1 GGGTTTA
526829 GGG-TTA
1 GGGTTTA
526835 GGGTTTA
1 GGGTTTA
526842 GGGTTTA
1 GGGTTTA
526849 GGGTTTA
1 GGGTTTA
526856 GGGTTTA
1 GGGTTTA
526863 GGGTTTA
1 GGGTTTA
526870 GGGTTTA
1 GGGTTTA
526877 GGGTTTA
1 GGGTTTA
526884 GGGTTTA
1 GGGTTTA
526891 GGGTTTA
1 GGGTTTA
526898 GGGTTTA
1 GGGTTTA
526905 GGG-TTA
1 GGGTTTA
526911 GGGTTTA
1 GGGTTTA
526918 GGGTTTA
1 GGGTTTA
526925 GGG-TTA
1 GGGTTTA
526931 GGGTTTA
1 GGGTTTA
526938 GGGTTTA
1 GGGTTTA
526945 GGGTTTA
1 GGGTTTA
526952 GGGTTTA
1 GGGTTTA
526959 GGGTTTA
1 GGGTTTA
526966 GGGTTTA
1 GGGTTTA
526973 GGGTTTA
1 GGGTTTA
526980 GGGTTTA
1 GGGTTTA
526987 GGGTTTA
1 GGGTTTA
526994 GGGTTTA
1 GGGTTTA
527001 GGGTTTA
1 GGGTTTA
527008 GGGTTTA
1 GGGTTTA
527015 GGGTTTA
1 GGGTTTA
527022 -GGTTTA
1 GGGTTTA
527028 GGGTTTA
1 GGGTTTA
527035 GGGTTTA
1 GGGTTTA
527042 GGGTTTA
1 GGGTTTA
527049 GGGTTTA
1 GGGTTTA
527056 GGGTTTA
1 GGGTTTA
527063 GGGTTTA
1 GGGTTTA
527070 GGGTTTA
1 GGGTTTA
527077 GGGTTTA
1 GGGTTTA
527084 GGGTTTA
1 GGGTTTA
527091 GGGTTTA
1 GGGTTTA
527098 GGGTTTA
1 GGGTTTA
527105 GGGTTTA
1 GGGTTTA
527112 GGGTTTA
1 GGGTTTA
527119 GGGTTTA
1 GGGTTTA
527126 GGG-TTA
1 GGGTTTA
527132 GGGTTTA
1 GGGTTTA
527139 GGGTTTA
1 GGGTTTA
527146 GGGTTTA
1 GGGTTTA
527153 GGGTTTA
1 GGGTTTA
527160 GGGTTTA
1 GGGTTTA
527167 GGGTTTA
1 GGGTTTA
527174 GGGTTTA
1 GGGTTTA
527181 GGGTTTA
1 GGGTTTA
527188 GGGTTTA
1 GGGTTTA
527195 GGGTTTA
1 GGGTTTA
527202 GGGTTTA
1 GGGTTTA
527209 GGGTTTA
1 GGGTTTA
527216 GGGTTTA
1 GGGTTTA
527223 GGGTTTA
1 GGGTTTA
527230 GGGTTTA
1 GGGTTTA
527237 GGGTTTA
1 GGGTTTA
527244 GGGTTTA
1 GGGTTTA
527251 GGGTTTA
1 GGGTTTA
527258 GGGTTTA
1 GGGTTTA
527265 GGGTTTA
1 GGGTTTA
527272 GGGTTTA
1 GGGTTTA
527279 GGGTTTA
1 GGGTTTA
527286 GGGTTTA
1 GGGTTTA
527293 GGGTTTA
1 GGGTTTA
527300 GGGTTTA
1 GGGTTTA
527307 GGGTTTA
1 GGGTTTA
527314 GGGTTTA
1 GGGTTTA
527321 GGGTTTA
1 GGGTTTA
527328 GGGTTTA
1 GGGTTTA
527335 GGGTTTA
1 GGGTTTA
527342 GGGTTTA
1 GGGTTTA
527349 GGGTTTA
1 GGGTTTA
527356 GGGTTTA
1 GGGTTTA
527363 GGGTTTA
1 GGGTTTA
527370 GGGTTTA
1 GGGTTTA
527377 GGGTTTA
1 GGGTTTA
527384 GGGTTTA
1 GGGTTTA
527391 GGGTTTA
1 GGGTTTA
527398 GGGTTTA
1 GGGTTTA
527405 GGGTTTA
1 GGGTTTA
527412 GGGTTTA
1 GGGTTTA
527419 GGGTTTA
1 GGGTTTA
527426 GGGTTTA
1 GGGTTTA
527433 GGGTTTA
1 GGGTTTA
527440 GGGTTTTA
1 GGG-TTTA
527448 GGGTTTA
1 GGGTTTA
527455 GGGTTTA
1 GGGTTTA
527462 GGGTTTA
1 GGGTTTA
527469 GGGTTTA
1 GGGTTTA
527476 GGGTTTA
1 GGGTTTA
527483 GGG-TTA
1 GGGTTTA
527489 GGGTTTA
1 GGGTTTA
527496 GGGTTTA
1 GGGTTTA
527503 GGG-TTA
1 GGGTTTA
527509 GGGTTTA
1 GGGTTTA
527516 GGGTTTA
1 GGGTTTA
527523 GGGTTTA
1 GGGTTTA
527530 GGGTTTA
1 GGGTTTA
527537 GGGTTTA
1 GGGTTTA
527544 GGGTTTA
1 GGGTTTA
527551 GGGTTTA
1 GGGTTTA
527558 GGGTTTA
1 GGGTTTA
527565 GGGTTTA
1 GGGTTTA
527572 GGGTTTA
1 GGGTTTA
527579 GGGTTTA
1 GGGTTTA
527586 GGGTTTA
1 GGGTTTA
527593 -GGTTTA
1 GGGTTTA
527599 GGG-TTA
1 GGGTTTA
527605 GGGTTTA
1 GGGTTTA
527612 GGGTTTA
1 GGGTTTA
*
527619 GGGTTTT
1 GGGTTTA
527626 GGGTTTA
1 GGGTTTA
527633 GGGTTTA
1 GGGTTTA
527640 GGGTTTTTTA
1 GGG---TTTA
527650 -GGTTTA
1 GGGTTTA
527656 GGGTTTA
1 GGGTTTA
527663 GGGTTTA
1 GGGTTTA
527670 -GGTTTA
1 GGGTTTA
527676 GGGTTTA
1 GGGTTTA
527683 GGG-TTA
1 GGGTTTA
527689 GGGTTTA
1 GGGTTTA
527696 GGGTTTA
1 GGGTTTA
527703 GGGTTTA
1 GGGTTTA
527710 GGG-TTA
1 GGGTTTA
527716 GGGTTTA
1 GGGTTTA
527723 GGG-TTA
1 GGGTTTA
527729 GGGTTTA
1 GGGTTTA
527736 -GGTTTA
1 GGGTTTA
527742 GGGTTTA
1 GGGTTTA
527749 GGGTTTA
1 GGGTTTA
527756 GGG-TTA
1 GGGTTTA
527762 -GG-TTA
1 GGGTTTA
527767 GGGTTTA
1 GGGTTTA
527774 GGGTTTA
1 GGGTTTA
527781 GGG-TTA
1 GGGTTTA
527787 GGGTTTA
1 GGGTTTA
527794 GGGTTTA
1 GGGTTTA
527801 GGGTTTA
1 GGGTTTA
527808 GGGTTTA
1 GGGTTTA
527815 GGGTTTA
1 GGGTTTA
527822 -GGTTTA
1 GGGTTTA
527828 GGGTTTA
1 GGGTTTA
527835 GGGTTTA
1 GGGTTTA
527842 GGGTTTA
1 GGGTTTA
527849 GGGTTTA
1 GGGTTTA
527856 GGGTTTA
1 GGGTTTA
527863 GGGTTTA
1 GGGTTTA
527870 GGG-TTA
1 GGGTTTA
527876 GGGTTTA
1 GGGTTTA
527883 GGGTTTA
1 GGGTTTA
527890 GGG-TTA
1 GGGTTTA
527896 GGGTTTA
1 GGGTTTA
527903 GGGTTTA
1 GGGTTTA
527910 GGGTTTA
1 GGGTTTA
527917 GGGTTTA
1 GGGTTTA
527924 GGGTTTA
1 GGGTTTA
527931 GGG-TTA
1 GGGTTTA
527937 GGGTTTA
1 GGGTTTA
527944 GGG-TTA
1 GGGTTTA
527950 GGGTTTA
1 GGGTTTA
527957 GGGTTT-
1 GGGTTTA
527963 -GGTTTA
1 GGGTTTA
527969 GGGTTTA
1 GGGTTTA
527976 GGG-TTA
1 GGGTTTA
527982 -GGTTTA
1 GGGTTTA
527988 GGG-TTA
1 GGGTTTA
527994 GGGTTTA
1 GGGTTTA
528001 GGGTTTA
1 GGGTTTA
528008 GGG--TA
1 GGGTTTA
528013 GGG-TTA
1 GGGTTTA
528019 GGGTTTA
1 GGGTTTA
528026 -GGTTTA
1 GGGTTTA
528032 GGGTTTA
1 GGGTTTA
528039 GGGTTTA
1 GGGTTTA
528046 GGG-TTA
1 GGGTTTA
528052 GGGTTTA
1 GGGTTTA
528059 GGGTTTA
1 GGGTTTA
528066 GGGTTTA
1 GGGTTTA
528073 GGGTTTA
1 GGGTTTA
528080 GGGTTTA
1 GGGTTTA
528087 GGGTTTA
1 GGGTTTA
528094 GGG-TTA
1 GGGTTTA
528100 GGGTTTA
1 GGGTTTA
528107 -GGTTTA
1 GGGTTTA
528113 GGG-TTA
1 GGGTTTA
528119 GGG-TTA
1 GGGTTTA
528125 GGGTTTA
1 GGGTTTA
528132 GGG-TTA
1 GGGTTTA
528138 GGGTTTA
1 GGGTTTA
*
528145 GGG-TGA
1 GGGTTTA
528151 GGGTTTA
1 GGGTTTA
528158 -GGTTTA
1 GGGTTTA
528164 GGGTTTA
1 GGGTTTA
528171 GGGTTTA
1 GGGTTTA
528178 GGGTTTA
1 GGGTTTA
528185 GGGTTTA
1 GGGTTTA
528192 GGGTTTA
1 GGGTTTA
528199 GGGTTTA
1 GGGTTTA
528206 GGGTTTA
1 GGGTTTA
528213 GGGTTTA
1 GGGTTTA
528220 GGGTTTA
1 GGGTTTA
528227 GGG-TTA
1 GGGTTTA
528233 GGGTTTA
1 GGGTTTA
528240 GGG-TTA
1 GGGTTTA
528246 GGGTTTA
1 GGGTTTA
528253 GGGTTTA
1 GGGTTTA
528260 -GGTTTA
1 GGGTTTA
528266 GGGTTTA
1 GGGTTTA
528273 GGG-TTA
1 GGGTTTA
528279 GGGTTTA
1 GGGTTTA
528286 --GTTTA
1 GGGTTTA
528291 GGGTTTA
1 GGGTTTA
*
528298 GGGGTTA
1 GGGTTTA
528305 GGGTTTA
1 GGGTTTA
528312 GGGTTTA
1 GGGTTTA
*
528319 GGGTTTC
1 GGGTTTA
528326 GGGTTTA
1 GGGTTTA
528333 GGGTTTA
1 GGGTTTA
528340 GGGTTTA
1 GGGTTTA
528347 GGGTTTA
1 GGGTTTA
528354 GGGTTTA
1 GGGTTTA
528361 GGGTTTA
1 GGGTTTA
528368 GGGTTTA
1 GGGTTTA
528375 GGG-TTA
1 GGGTTTA
528381 GGGTTTA
1 GGGTTTA
528388 GGGTTTA
1 GGGTTTA
528395 GGGTTTA
1 GGGTTTA
528402 GGGTTTA
1 GGGTTTA
528409 GGGTTTA
1 GGGTTTA
528416 GGGTTTA
1 GGGTTTA
528423 GGGTTTA
1 GGGTTTA
528430 -GGTTTA
1 GGGTTTA
528436 GGGTTTA
1 GGGTTTA
528443 GGG-TTA
1 GGGTTTA
528449 GGG-TTA
1 GGGTTTA
528455 GGGTTTA
1 GGGTTTA
528462 GGGTTTA
1 GGGTTTA
528469 GGGTTTA
1 GGGTTTA
528476 GGG-TTA
1 GGGTTTA
528482 -GGTTTA
1 GGGTTTA
528488 GGGTTTA
1 GGGTTTA
528495 GGGTTTA
1 GGGTTTA
528502 GGGTTTA
1 GGGTTTA
528509 GGG-TTA
1 GGGTTTA
528515 GGGTTTA
1 GGGTTTA
528522 -GGTTTA
1 GGGTTTA
528528 -GGTTTA
1 GGGTTTA
528534 GGGTTTA
1 GGGTTTA
528541 -GGTTTA
1 GGGTTTA
528547 GGGTTTA
1 GGGTTTA
528554 GGGTTTA
1 GGGTTTA
528561 GGGTTTA
1 GGGTTTA
528568 GGGTTTA
1 GGGTTTA
528575 GGGTTTA
1 GGGTTTA
528582 GGGTTTA
1 GGGTTTA
528589 GGGTTTA
1 GGGTTTA
528596 GGG-TTA
1 GGGTTTA
528602 GGGTTTA
1 GGGTTTA
528609 GGGTTTA
1 GGGTTTA
528616 GGGTTTA
1 GGGTTTA
528623 GGGTTTA
1 GGGTTTA
528630 -GGTTTA
1 GGGTTTA
528636 GGGTTTA
1 GGGTTTA
528643 GGGTTTA
1 GGGTTTA
528650 GGG-TTA
1 GGGTTTA
528656 GGGTTTA
1 GGGTTTA
528663 GGGTTTA
1 GGGTTTA
528670 GGG-TTA
1 GGGTTTA
528676 -GGTTTA
1 GGGTTTA
528682 GGGTTTA
1 GGGTTTA
528689 GGG-TTA
1 GGGTTTA
528695 GGGTTTA
1 GGGTTTA
528702 GGGTTTA
1 GGGTTTA
528709 GGGTTTA
1 GGGTTTA
528716 GGGTTTA
1 GGGTTTA
528723 GGGTTTA
1 GGGTTTA
528730 GGG-TTA
1 GGGTTTA
528736 GGGTTTA
1 GGGTTTA
528743 GGGTTTA
1 GGGTTTA
528750 GGGTTTA
1 GGGTTTA
528757 GGGTTTA
1 GGGTTTA
528764 GGGTTTA
1 GGGTTTA
**
528771 GGGGGTA
1 GGGTTTA
528778 GGGTTTA
1 GGGTTTA
528785 GGGTTTA
1 GGGTTTA
528792 GGGTTTA
1 GGGTTTA
528799 GGGTTT-
1 GGGTTTA
528805 -GGTTTA
1 GGGTTTA
528811 GGGTTTA
1 GGGTTTA
528818 GGGTTTA
1 GGGTTTA
528825 GGGTTTA
1 GGGTTTA
528832 GGGTTTA
1 GGGTTTA
528839 GGGTTTA
1 GGGTTTA
528846 GGGTTTA
1 GGGTTTA
528853 GGG-TTA
1 GGGTTTA
528859 GGGTTTA
1 GGGTTTA
528866 GGGTTTA
1 GGGTTTA
528873 GGGTTTA
1 GGGTTTA
528880 GGGTTTA
1 GGGTTTA
528887 GGGTTTA
1 GGGTTTA
528894 GGGTTTA
1 GGGTTTA
528901 GGG-TTA
1 GGGTTTA
528907 GGGTTTA
1 GGGTTTA
528914 GGGTTTA
1 GGGTTTA
528921 GGGTTTA
1 GGGTTTA
528928 --GTTTA
1 GGGTTTA
528933 GGGTTTA
1 GGGTTTA
528940 GGGTTTA
1 GGGTTTA
528947 GGGTTTA
1 GGGTTTA
528954 GGTAGGTTTA
1 -G--GGTTTA
528964 GGGTTTA
1 GGGTTTA
528971 GGG-TTA
1 GGGTTTA
528977 GGGTTTA
1 GGGTTTA
528984 GGGTTTA
1 GGGTTTA
528991 GGGTTTA
1 GGGTTTA
528998 GGGTTTA
1 GGGTTTA
529005 GGGTTTA
1 GGGTTTA
529012 GGGTTTA
1 GGGTTTA
529019 GGGTTTA
1 GGGTTTA
529026 GGGTTTA
1 GGGTTTA
529033 GGGTTTA
1 GGGTTTA
529040 GGGTTTA
1 GGGTTTA
529047 GGGTTTA
1 GGGTTTA
529054 GGG-TTA
1 GGGTTTA
529060 GGGTTTA
1 GGGTTTA
529067 GGGTTTA
1 GGGTTTA
529074 -GGTTTA
1 GGGTTTA
529080 GGGTTTA
1 GGGTTTA
529087 GGGTTTA
1 GGGTTTA
529094 GGGTTTA
1 GGGTTTA
529101 GGGTTTA
1 GGGTTTA
529108 GGGTTTTTTA
1 GGG---TTTA
529118 GGGTTTA
1 GGGTTTA
529125 GGGTTTA
1 GGGTTTA
529132 -GGTTTA
1 GGGTTTA
529138 GGGTTTTA
1 GGG-TTTA
529146 GGGTTTA
1 GGGTTTA
529153 GGGTTTA
1 GGGTTTA
529160 GGGTTTA
1 GGGTTTA
529167 GGGTTTA
1 GGGTTTA
529174 GGGTTTA
1 GGGTTTA
529181 GGGTTTA
1 GGGTTTA
529188 GGGTTTA
1 GGGTTTA
529195 GGGTTTA
1 GGGTTTA
529202 GGGTTTA
1 GGGTTTA
529209 GGGTTTA
1 GGGTTTA
529216 GGGTTTA
1 GGGTTTA
529223 GGGTTTA
1 GGGTTTA
529230 GGGTTTA
1 GGGTTTA
529237 GGGTTTA
1 GGGTTTA
529244 GGGTTTA
1 GGGTTTA
529251 GGGTTTA
1 GGGTTTA
529258 GGGTTTA
1 GGGTTTA
529265 GGGTTTA
1 GGGTTTA
529272 -GG-TTA
1 GGGTTTA
529277 GGGTTTA
1 GGGTTTA
529284 -GGTTTA
1 GGGTTTA
529290 GGGTTTA
1 GGGTTTA
529297 GGGTTTTA
1 GGG-TTTA
529305 GGGTTTA
1 GGGTTTA
529312 GGGTTTA
1 GGGTTTA
529319 GGGTTTA
1 GGGTTTA
529326 GGGTTTA
1 GGGTTTA
529333 GGGTTTA
1 GGGTTTA
529340 GGGTTTA
1 GGGTTTA
529347 GGGTTTA
1 GGGTTTA
529354 GGGTTTA
1 GGGTTTA
529361 -GGTTTA
1 GGGTTTA
529367 GGGTTTA
1 GGGTTTA
529374 GGGTTTA
1 GGGTTTA
529381 GGGTTTA
1 GGGTTTA
529388 GGGTTTA
1 GGGTTTA
529395 GGGTTTA
1 GGGTTTA
529402 GGG-TT-
1 GGGTTTA
529407 -GGTTTA
1 GGGTTTA
529413 GGGTTTA
1 GGGTTTA
529420 GGGTTTA
1 GGGTTTA
529427 GGGTTTA
1 GGGTTTA
529434 GGGTTTA
1 GGGTTTA
529441 GGGTTTA
1 GGGTTTA
529448 GGGTTTA
1 GGGTTTA
529455 GGGTTTA
1 GGGTTTA
*
529462 GGGTTTC
1 GGGTTTA
529469 GGGTTTA
1 GGGTTTA
529476 GGGTTTA
1 GGGTTTA
529483 GGGTTTA
1 GGGTTTA
529490 GGG-TTA
1 GGGTTTA
529496 GGGTTTA
1 GGGTTTA
529503 GGGTTTA
1 GGGTTTA
529510 GGG-TTA
1 GGGTTTA
529516 GGG-TTA
1 GGGTTTA
529522 GGGTTTA
1 GGGTTTA
529529 GGGTTTA
1 GGGTTTA
529536 -GGTTTA
1 GGGTTTA
529542 GGGTTTA
1 GGGTTTA
529549 GGGTTTA
1 GGGTTTA
529556 GGGTTTA
1 GGGTTTA
529563 GGGTTTA
1 GGGTTTA
529570 GGGTTTA
1 GGGTTTA
529577 GGGTTTA
1 GGGTTTA
529584 -GGTTTA
1 GGGTTTA
529590 GGGTTTA
1 GGGTTTA
529597 GGGTTTA
1 GGGTTTA
529604 GGGTTTA
1 GGGTTTA
529611 GGGTTTA
1 GGGTTTA
529618 GGGTTTA
1 GGGTTTA
529625 GGGTTTTA
1 GGG-TTTA
529633 GGGTTTA
1 GGGTTTA
529640 -GGTTTA
1 GGGTTTA
529646 GGGTTTA
1 GGGTTTA
529653 GGGTTTA
1 GGGTTTA
529660 GGGTTTA
1 GGGTTTA
529667 GGGTTTA
1 GGGTTTA
529674 GGGTTTA
1 GGGTTTA
*
529681 GGGTTTC
1 GGGTTTA
529688 GGGTTTA
1 GGGTTTA
529695 GGGTTTA
1 GGGTTTA
529702 GGGTTTA
1 GGGTTTA
529709 GGGTTTA
1 GGGTTTA
529716 GGGTTTA
1 GGGTTTA
529723 GGG-TTA
1 GGGTTTA
529729 -GGTTTA
1 GGGTTTA
529735 GGGTTTA
1 GGGTTTA
529742 GGG-TTA
1 GGGTTTA
529748 GGGTTTA
1 GGGTTTA
529755 GGGTTTA
1 GGGTTTA
529762 GGG-TTA
1 GGGTTTA
529768 GGGTTTA
1 GGGTTTA
529775 -GGTTTA
1 GGGTTTA
529781 GGGTTTA
1 GGGTTTA
529788 GGGTTTA
1 GGGTTTA
529795 GGGTTTA
1 GGGTTTA
529802 GGGTTTA
1 GGGTTTA
529809 GGGTTTA
1 GGGTTTA
529816 -GGTTTA
1 GGGTTTA
529822 GGG-TTA
1 GGGTTTA
529828 GGGTTTA
1 GGGTTTA
529835 GGGTTTA
1 GGGTTTA
529842 GGGTTTA
1 GGGTTTA
529849 GGGTTTA
1 GGGTTTA
529856 GGGTTTTA
1 GGG-TTTA
529864 GGGTTTA
1 GGGTTTA
529871 GGG-TTA
1 GGGTTTA
529877 -GGTTTA
1 GGGTTTA
529883 GGGTTTA
1 GGGTTTA
529890 GGGTTTA
1 GGGTTTA
529897 GGG-TTA
1 GGGTTTA
529903 GGG-TTA
1 GGGTTTA
529909 -GGTTTA
1 GGGTTTA
529915 GGGTTTA
1 GGGTTTA
529922 GGGTTT-
1 GGGTTTA
529928 GGG-TTA
1 GGGTTTA
529934 GGGTTTA
1 GGGTTTA
529941 GGGTTTA
1 GGGTTTA
529948 -GGTTTA
1 GGGTTTA
529954 GGGTTTA
1 GGGTTTA
529961 GGGTTTA
1 GGGTTTA
*
529968 TGGTTTA
1 GGGTTTA
529975 GGGTTTA
1 GGGTTTA
529982 GGGTTTA
1 GGGTTTA
529989 GGGTTTA
1 GGGTTTA
529996 GGG-TTA
1 GGGTTTA
530002 GGGTTTA
1 GGGTTTA
530009 -GGTTTA
1 GGGTTTA
530015 GGGTTTA
1 GGGTTTA
530022 GGG-TTA
1 GGGTTTA
530028 GGGTTTTA
1 GGG-TTTA
530036 GGGTTTA
1 GGGTTTA
530043 GGGTTTA
1 GGGTTTA
530050 GGGTTTA
1 GGGTTTA
530057 GGGTTTA
1 GGGTTTA
530064 -GGTTTA
1 GGGTTTA
530070 GGGTTT-
1 GGGTTTA
530076 GGGTTTA
1 GGGTTTA
530083 GGGTTTA
1 GGGTTTA
530090 GGGTTTA
1 GGGTTTA
530097 GGG-TTA
1 GGGTTTA
530103 GGGTTTA
1 GGGTTTA
530110 GGGTTTA
1 GGGTTTA
530117 GGGTTTA
1 GGGTTTA
530124 GGGTTTA
1 GGGTTTA
530131 GGGTTTA
1 GGGTTTA
530138 GGGTTTA
1 GGGTTTA
530145 GGGTTTA
1 GGGTTTA
530152 GGGTTTA
1 GGGTTTA
530159 GGGTTTA
1 GGGTTTA
530166 GGGTTTA
1 GGGTTTA
530173 GGGTTTA
1 GGGTTTA
530180 GGGTTTA
1 GGGTTTA
530187 GGGGTTTA
1 -GGGTTTA
530195 -GGTTTA
1 GGGTTTA
530201 GTAGGTTTA
1 G--GGTTTA
*
530210 -GGTTTC
1 GGGTTTA
530216 GGGTTTA
1 GGGTTTA
530223 GGGGGTTTA
1 --GGGTTTA
530232 GGG-TTA
1 GGGTTTA
530238 GGG-TTA
1 GGGTTTA
530244 GGGTTTA
1 GGGTTTA
530251 GGGTTTA
1 GGGTTTA
530258 GGGTTTA
1 GGGTTTA
530265 GGGTTTA
1 GGGTTTA
530272 GGGTTTA
1 GGGTTTA
530279 GGGTTTA
1 GGGTTTA
530286 GGGTTTA
1 GGGTTTA
530293 GGGTTTA
1 GGGTTTA
530300 GGGTTTA
1 GGGTTTA
530307 GGGGGTTT-
1 --GGGTTTA
530315 -GGTTTA
1 GGGTTTA
530321 GGGTTTA
1 GGGTTTA
530328 GGGTTTTTTA
1 GGG---TTTA
530338 GGGTTTA
1 GGGTTTA
530345 GGGTTTA
1 GGGTTTA
530352 GGGTTTA
1 GGGTTTA
530359 GGGTTT-
1 GGGTTTA
530365 GGGTTTA
1 GGGTTTA
530372 -GGTTTA
1 GGGTTTA
530378 -GGTTTA
1 GGGTTTA
530384 GGGTTTA
1 GGGTTTA
530391 GGGTTTA
1 GGGTTTA
530398 GGGTTTA
1 GGGTTTA
530405 GGGTTTA
1 GGGTTTA
530412 GGGTTTA
1 GGGTTTA
530419 GGGTTTA
1 GGGTTTA
530426 GGGTTTA
1 GGGTTTA
530433 GGGTTTA
1 GGGTTTA
530440 GGGTTTA
1 GGGTTTA
530447 GGGTTTA
1 GGGTTTA
530454 GGGTTTA
1 GGGTTTA
530461 -GGTTTA
1 GGGTTTA
530467 GGGTTTA
1 GGGTTTA
530474 GGGTTTA
1 GGGTTTA
530481 GGGTTTA
1 GGGTTTA
530488 GGGTTTA
1 GGGTTTA
530495 GGG-TTA
1 GGGTTTA
530501 GGGTTTA
1 GGGTTTA
530508 GGGTTTA
1 GGGTTTA
530515 GGG-TTA
1 GGGTTTA
530521 GGGTTTA
1 GGGTTTA
530528 GGGTTTA
1 GGGTTTA
530535 GGGTTTA
1 GGGTTTA
530542 GGGTTTA
1 GGGTTTA
530549 GGGTTTA
1 GGGTTTA
530556 GGGTTTA
1 GGGTTTA
530563 GGGTTTA
1 GGGTTTA
530570 GGGTTTA
1 GGGTTTA
530577 GGGTTTA
1 GGGTTTA
530584 GGGTTTA
1 GGGTTTA
530591 GGGTTTTA
1 GGG-TTTA
530599 GGGTTTA
1 GGGTTTA
530606 -GGTTTA
1 GGGTTTA
530612 GGGTTTA
1 GGGTTTA
530619 GGGTTTA
1 GGGTTTA
530626 GGGTTTA
1 GGGTTTA
530633 GGGTTTA
1 GGGTTTA
530640 -GGTTTA
1 GGGTTTA
530646 GGGTTTA
1 GGGTTTA
530653 GGGTTTA
1 GGGTTTA
530660 GGGTTTA
1 GGGTTTA
530667 GGGTTTA
1 GGGTTTA
530674 GGGTTTTTA
1 GGG--TTTA
530683 GGGTTT-
1 GGGTTTA
530689 GGGTTTA
1 GGGTTTA
530696 GGG-TTA
1 GGGTTTA
530702 GGGTTTA
1 GGGTTTA
530709 GGGTTTA
1 GGGTTTA
530716 GGGTTTA
1 GGGTTTA
530723 GGGTTTA
1 GGGTTTA
530730 GGG-TTA
1 GGGTTTA
530736 GGGTTTA
1 GGGTTTA
530743 GGGTTTA
1 GGGTTTA
530750 GGG-TTA
1 GGGTTTA
530756 GGGTTTA
1 GGGTTTA
530763 GGGTTTA
1 GGGTTTA
530770 GGGTTTA
1 GGGTTTA
530777 GGGTTTA
1 GGGTTTA
530784 GGG-TTA
1 GGGTTTA
530790 GGGTTTA
1 GGGTTTA
530797 GGGTTT-
1 GGGTTTA
*
530803 -GGTGTA
1 GGGTTTA
530809 GGGTTTA
1 GGGTTTA
530816 GGGTTTA
1 GGGTTTA
530823 GGGTTTA
1 GGGTTTA
530830 GGGTTTA
1 GGGTTTA
530837 GGGTTTA
1 GGGTTTA
530844 GGGTTTA
1 GGGTTTA
530851 GGGTTTA
1 GGGTTTA
530858 GGGTTTA
1 GGGTTTA
530865 GGGTTTA
1 GGGTTTA
530872 GGGTTTA
1 GGGTTTA
530879 GGG--TA
1 GGGTTTA
530884 GGGTTTA
1 GGGTTTA
530891 GGGTTTA
1 GGGTTTA
530898 GGGTTTA
1 GGGTTTA
530905 GGGTTTA
1 GGGTTTA
530912 GGGTTTA
1 GGGTTTA
530919 GGGTTTTA
1 GGG-TTTA
530927 GGGTTTA
1 GGGTTTA
530934 GGGTTTTTA
1 GGG--TTTA
530943 GGGTTTA
1 GGGTTTA
530950 GGGTTTA
1 GGGTTTA
530957 GGGTTTA
1 GGGTTTA
530964 GGGTTTA
1 GGGTTTA
530971 GGGTTTAGGA
1 GGGTTT---A
530981 GGGTTTA
1 GGGTTTA
530988 GGGTTTA
1 GGGTTTA
530995 GGGTTTA
1 GGGTTTA
531002 GGGTTTA
1 GGGTTTA
531009 GGGTTTA
1 GGGTTTA
531016 GGGTTTA
1 GGGTTTA
531023 -GG-TTA
1 GGGTTTA
531028 GGGTTTA
1 GGGTTTA
531035 -GGTTTA
1 GGGTTTA
531041 GGGTTTA
1 GGGTTTA
531048 GGGTTTA
1 GGGTTTA
531055 GGGTTTA
1 GGGTTTA
531062 GGG-TTA
1 GGGTTTA
531068 GGGTTTA
1 GGGTTTA
531075 GGGTTTA
1 GGGTTTA
531082 GGGTTTA
1 GGGTTTA
531089 GGGTTTA
1 GGGTTTA
531096 GGGTTTA
1 GGGTTTA
531103 GGGTTTA
1 GGGTTTA
531110 GGGTTTA
1 GGGTTTA
531117 GGGTTTA
1 GGGTTTA
531124 GGGTTTA
1 GGGTTTA
531131 GGGTTTA
1 GGGTTTA
531138 GGGTTTA
1 GGGTTTA
531145 GGGTTTA
1 GGGTTTA
531152 GGGTTTA
1 GGGTTTA
531159 GGGTTTA
1 GGGTTTA
531166 GGGTTTA
1 GGGTTTA
531173 GGGTTTA
1 GGGTTTA
531180 GGGTTTA
1 GGGTTTA
531187 GGGTTTA
1 GGGTTTA
531194 GGGTTTA
1 GGGTTTA
531201 GGGTTTA
1 GGGTTTA
531208 --GTTTA
1 GGGTTTA
531213 GGGTTTA
1 GGGTTTA
531220 GGGTTTA
1 GGGTTTA
531227 GGGTTTA
1 GGGTTTA
531234 GGGTTTA
1 GGGTTTA
531241 -GGTTTA
1 GGGTTTA
531247 GGGTTTA
1 GGGTTTA
531254 GGGTTTA
1 GGGTTTA
531261 GGG-TTA
1 GGGTTTA
531267 -GG-TTA
1 GGGTTTA
531272 GGGTTTA
1 GGGTTTA
531279 GGGTTTA
1 GGGTTTA
531286 -GGTTTA
1 GGGTTTA
531292 GGGTTTA
1 GGGTTTA
531299 GGGTTTA
1 GGGTTTA
531306 GGGTTTA
1 GGGTTTA
531313 GGGTTTA
1 GGGTTTA
531320 GGGTTTA
1 GGGTTTA
531327 GGGTTTA
1 GGGTTTA
531334 GGGTTTA
1 GGGTTTA
531341 GGGTTTA
1 GGGTTTA
531348 GGGTTTA
1 GGGTTTA
531355 GGGTTTA
1 GGGTTTA
531362 GGGTTTA
1 GGGTTTA
531369 GGGTTTA
1 GGGTTTA
531376 GGGTTTTA
1 GGG-TTTA
531384 GGGTTTA
1 GGGTTTA
531391 GGGTTTA
1 GGGTTTA
531398 GGGTTTA
1 GGGTTTA
531405 -GGTTTA
1 GGGTTTA
531411 GGGTTTA
1 GGGTTTA
531418 GGGTTTA
1 GGGTTTA
531425 GGGTTTA
1 GGGTTTA
531432 GGGTTTA
1 GGGTTTA
531439 GGGTTTA
1 GGGTTTA
531446 GGGTTTTA
1 GGG-TTTA
531454 GGGTTTA
1 GGGTTTA
531461 GGGTTTA
1 GGGTTTA
531468 GGGTTTA
1 GGGTTTA
531475 GGGTTTA
1 GGGTTTA
531482 GGGTTTA
1 GGGTTTA
531489 -GGTTTA
1 GGGTTTA
531495 GGG-TTA
1 GGGTTTA
531501 GGGTTTA
1 GGGTTTA
531508 GGGTTTA
1 GGGTTTA
*
531515 GGTTTTA
1 GGGTTTA
531522 GGGTTTA
1 GGGTTTA
531529 GGGTTTA
1 GGGTTTA
531536 GGGTTTA
1 GGGTTTA
531543 GGGTTTA
1 GGGTTTA
531550 GGGTTTA
1 GGGTTTA
531557 GGGTTTA
1 GGGTTTA
531564 GGGTTTA
1 GGGTTTA
531571 GGGTTTTA
1 GGG-TTTA
531579 GGGTTTA
1 GGGTTTA
531586 -GGTTTA
1 GGGTTTA
531592 GGGTTTA
1 GGGTTTA
531599 GGGTTTA
1 GGGTTTA
*
531606 GGTTTTA
1 GGGTTTA
531613 GGGTTTA
1 GGGTTTA
531620 GGG-TTA
1 GGGTTTA
531626 GGGTTTA
1 GGGTTTA
531633 GGGTTTA
1 GGGTTTA
531640 GGG-TTA
1 GGGTTTA
531646 GGGTTTA
1 GGGTTTA
531653 GGGTTTA
1 GGGTTTA
531660 GGGTTTA
1 GGGTTTA
531667 -GGTTT-
1 GGGTTTA
531672 -GGTTTA
1 GGGTTTA
531678 GGGTTTA
1 GGGTTTA
531685 GGGTTTA
1 GGGTTTA
531692 GGGTTTA
1 GGGTTTA
531699 GGGGTTTA
1 -GGGTTTA
531707 GGGTTTA
1 GGGTTTA
531714 GGGTTTA
1 GGGTTTA
531721 GGGTTTA
1 GGGTTTA
531728 GGGTTTA
1 GGGTTTA
531735 GGGTTTA
1 GGGTTTA
531742 GGGTTTA
1 GGGTTTA
531749 GGGTTTA
1 GGGTTTA
531756 GGGTTTA
1 GGGTTTA
531763 GGGTTTA
1 GGGTTTA
531770 -GGTTTA
1 GGGTTTA
531776 GGGTTTA
1 GGGTTTA
531783 GGGTTTA
1 GGGTTTA
531790 GGGTTTA
1 GGGTTTA
531797 GGG-TTA
1 GGGTTTA
531803 GGGTTTA
1 GGGTTTA
531810 GGGTTTA
1 GGGTTTA
531817 -GGTTTA
1 GGGTTTA
531823 GGG--TA
1 GGGTTTA
531828 GGGTTGGTA
1 GGGTT--TA
531837 GGGTTTA
1 GGGTTTA
531844 GGGTTTA
1 GGGTTTA
531851 GGGTTTA
1 GGGTTTA
531858 GGGTTTA
1 GGGTTTA
531865 GGGTTTTTA
1 GGG--TTTA
531874 GGG-TTA
1 GGGTTTA
531880 GGGTTTA
1 GGGTTTA
531887 GGGTTTA
1 GGGTTTA
531894 GGGTTTA
1 GGGTTTA
531901 GGGTTTA
1 GGGTTTA
531908 GGGTTTA
1 GGGTTTA
531915 GGGTTTA
1 GGGTTTA
531922 GGG-TTA
1 GGGTTTA
531928 GGGTTTA
1 GGGTTTA
531935 GGGTTTA
1 GGGTTTA
531942 GGGTTTA
1 GGGTTTA
531949 GGGTTT-
1 GGGTTTA
531955 GGGTTTA
1 GGGTTTA
531962 GGGTTTA
1 GGGTTTA
531969 GG
1 GG
Statistics
Matches: 6722, Mismatches: 27, Indels: 396
0.94 0.00 0.06
Matches are distributed among these distances:
4 2 0.00
5 86 0.01
6 764 0.11
7 5698 0.85
8 91 0.01
9 50 0.01
10 31 0.00
ACGTcount: A:0.14, C:0.04, G:0.43, T:0.39
Consensus pattern (7 bp):
GGGTTTA
Done.